Query         gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 232
No_of_seqs    136 out of 1089
Neff          7.0 
Searched_HMMs 23785
Date          Tue May 31 20:17:59 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780577.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1f3z_A EIIA-GLC, glucose-speci  98.3 1.2E-05 5.2E-10   56.1  10.8  135   65-221    12-160 (161)
  2 1ax3_A Iiaglc, glucose permeas  98.1 3.1E-05 1.3E-09   53.4   9.4  136   64-221    11-161 (162)
  3 2gpr_A Glucose-permease IIA co  98.0 5.8E-05 2.4E-09   51.6  10.1  130   66-217     8-151 (154)
  4 1z6h_A Biotin/lipoyl attachmen  95.6   0.026 1.1E-06   33.9   6.0   55  168-223    12-70  (72)
  5 2auk_A DNA-directed RNA polyme  94.9   0.042 1.8E-06   32.5   5.4   35  189-224   155-189 (190)
  6 1iyu_A E2P, dihydrolipoamide a  94.5    0.08 3.4E-06   30.6   6.1   57  168-225    17-77  (79)
  7 2ejm_A Methylcrotonoyl-COA car  94.4   0.065 2.7E-06   31.2   5.4   58  168-226    27-88  (99)
  8 2d5d_A Methylmalonyl-COA decar  94.1    0.13 5.4E-06   29.2   6.3   51  169-220    19-73  (74)
  9 2kcc_A Acetyl-COA carboxylase   93.5     0.1 4.3E-06   29.9   5.0   57  169-226    19-78  (84)
 10 2dn8_A Acetyl-COA carboxylase   93.4    0.22 9.1E-06   27.7   6.5   28  104-131    14-41  (100)
 11 1bdo_A Acetyl-COA carboxylase;  93.3    0.11 4.7E-06   29.6   4.9   52  168-220    24-79  (80)
 12 1ghj_A E2, E2, the dihydrolipo  93.3    0.14 5.8E-06   29.0   5.4   53  169-222    21-77  (79)
 13 2dn8_A Acetyl-COA carboxylase   93.2    0.29 1.2E-05   26.8   6.9   56  169-225    31-89  (100)
 14 1k8m_A E2 component of branche  93.0   0.078 3.3E-06   30.6   3.8   55  169-224    24-82  (93)
 15 3n6r_A Propionyl-COA carboxyla  92.9    0.23 9.6E-06   27.5   6.0   58  160-220   617-680 (681)
 16 3crk_C Dihydrolipoyllysine-res  92.8    0.21   9E-06   27.7   5.8   56  170-226    26-86  (87)
 17 2gpr_A Glucose-permease IIA co  92.7    0.08 3.4E-06   30.6   3.4   45   64-110    43-87  (154)
 18 1f3z_A EIIA-GLC, glucose-speci  92.6   0.083 3.5E-06   30.5   3.4   97  110-221    15-116 (161)
 19 3hbl_A Pyruvate carboxylase; T  92.2    0.59 2.5E-05   24.8   8.1   62  161-224  1082-1149(1150)
 20 1dcz_A Transcarboxylase 1.3S s  92.0    0.35 1.5E-05   26.3   6.0   51  169-220    22-76  (77)
 21 1qjo_A Dihydrolipoamide acetyl  91.5     0.2 8.5E-06   27.9   4.3   54  169-223    20-77  (80)
 22 3n6r_A Propionyl-COA carboxyla  91.4     0.4 1.7E-05   25.9   5.7   30  194-224   615-647 (681)
 23 1gjx_A Pyruvate dehydrogenase;  90.8    0.16 6.9E-06   28.5   3.3   54  169-223    21-78  (81)
 24 2dnc_A Pyruvate dehydrogenase   90.5    0.48   2E-05   25.4   5.5   56  169-225    27-87  (98)
 25 2k7v_A Dihydrolipoyllysine-res  90.5   0.092 3.9E-06   30.2   1.8   54  169-223    16-73  (85)
 26 2jku_A Propionyl-COA carboxyla  89.8   0.088 3.7E-06   30.3   1.3   51  169-220    39-93  (94)
 27 2kcc_A Acetyl-COA carboxylase   89.7    0.54 2.3E-05   25.0   5.2   67  108-186     6-72  (84)
 28 2qf7_A Pyruvate carboxylase pr  89.5    0.57 2.4E-05   24.9   5.2   55  161-217  1100-1161(1165)
 29 1y8o_B Dihydrolipoyllysine-res  88.8    0.74 3.1E-05   24.1   5.4   60  165-225    42-107 (128)
 30 3bg3_A Pyruvate carboxylase, m  87.4     1.4 5.9E-05   22.2   7.6   62  158-220   651-717 (718)
 31 2dne_A Dihydrolipoyllysine-res  86.1     1.1 4.5E-05   23.0   5.0   53  170-223    28-85  (108)
 32 2k32_A A; NMR {Campylobacter j  85.3     1.5 6.5E-05   22.0   5.4   33  191-223    67-102 (116)
 33 1pmr_A Dihydrolipoyl succinylt  84.7     0.1 4.4E-06   29.8  -0.8   52  170-222    23-78  (80)
 34 2gu1_A Zinc peptidase; alpha/b  84.3       2 8.4E-05   21.2   6.7   22  201-223   283-304 (361)
 35 1ci3_M Protein (cytochrome F);  81.7    0.46 1.9E-05   25.5   1.5   28  189-216   200-227 (249)
 36 2auk_A DNA-directed RNA polyme  81.3     0.4 1.7E-05   25.9   1.1   18  169-186   168-185 (190)
 37 1q90_A Apocytochrome F; membra  81.1     0.5 2.1E-05   25.3   1.5   28  189-216   201-228 (292)
 38 3csq_A Morphogenesis protein 1  80.5     1.3 5.6E-05   22.4   3.6   67  109-188   204-270 (334)
 39 2jxm_B Cytochrome F; copper, e  77.8     0.6 2.5E-05   24.7   1.1   28  189-216   200-227 (249)
 40 3nyy_A Putative glycyl-glycine  74.6       4 0.00017   19.2   6.6   59  109-186   141-199 (252)
 41 3fpp_A Macrolide-specific effl  73.2     1.7 7.3E-05   21.6   2.5   49   63-111   151-208 (341)
 42 1qwy_A Peptidoglycan hydrolase  72.9     4.4 0.00018   18.9   6.5   60  109-186   197-256 (291)
 43 2f1m_A Acriflavine resistance   68.6     1.5 6.2E-05   22.1   1.3   20  109-128   132-151 (277)
 44 3bz1_T PSII-T, PSII-TC, photos  67.4     5.2 0.00022   18.5   3.9   19   43-61     12-30  (32)
 45 2hsi_A Putative peptidase M23;  63.7     6.7 0.00028   17.7   6.9   31  191-223   222-252 (282)
 46 3lnn_A Membrane fusion protein  63.5       4 0.00017   19.2   2.7   18   66-83    171-188 (359)
 47 1e2w_A Cytochrome F; electron   62.7       3 0.00012   20.1   1.9   28  189-216   201-228 (251)
 48 1vf7_A Multidrug resistance pr  60.5     3.7 0.00016   19.4   2.1   10   68-77    140-149 (369)
 49 1zy8_K Pyruvate dehydrogenase   60.3     1.5 6.3E-05   22.1   0.0   12   68-79     49-60  (229)
 50 3fmc_A Putative succinylglutam  58.1     8.3 0.00035   17.1   6.6   55  166-221   300-362 (368)
 51 3d4r_A Domain of unknown funct  56.8     8.8 0.00037   16.9   5.5   25  202-227   114-138 (169)
 52 3cdx_A Succinylglutamatedesucc  53.4     9.9 0.00042   16.6   5.9   48  167-214   278-331 (354)
 53 1hcz_A Cytochrome F; electron   49.1     5.4 0.00023   18.3   1.4   28  189-216   200-227 (252)
 54 3it5_A Protease LASA; metallop  44.1     6.2 0.00026   17.9   1.1   38  144-187    66-103 (182)
 55 2qj8_A MLR6093 protein; NP_106  30.6      22 0.00093   14.2   6.5   44  167-210   268-323 (332)
 56 1yew_A Particulate methane mon  30.4      15 0.00063   15.4   1.2   39   39-78    161-205 (382)
 57 3hgb_A Glycine cleavage system  30.3      22 0.00094   14.2   5.5   87  115-202     9-99  (155)
 58 1vf5_C Cytochrome F; photosynt  27.8     3.2 0.00013   19.9  -2.6   27  189-215   204-230 (289)
 59 3klr_A Glycine cleavage system  27.1      25  0.0011   13.8   5.0   33  170-202    39-72  (125)
 60 1zko_A Glycine cleavage system  24.1      29  0.0012   13.5   5.1   33  170-202    52-85  (136)
 61 1wxm_A A-RAF proto-oncogene se  22.3      22 0.00092   14.3   0.8   10  121-130    22-31  (86)
 62 1so9_A Cytochrome C oxidase as  22.0      32  0.0013   13.2   2.3   27  159-185    90-116 (164)
 63 1ysl_A HMG-COA synthase; thiol  20.8      33  0.0014   13.0   1.5   19  172-190   309-327 (402)
 64 3mxu_A Glycine cleavage system  20.6      34  0.0014   13.0   5.0   33  170-202    61-94  (143)
 65 1c1y_B Proto-onkogene serine/t  20.4      26  0.0011   13.7   0.9   21  190-210     2-24  (77)
 66 1p7b_A Integral membrane chann  20.1      34  0.0014   12.9   7.1   43   42-85    138-180 (333)
 67 3ixz_B Potassium-transporting   20.1      34  0.0015   12.9   5.3   29   43-71     54-86  (290)

No 1  
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=98.26  E-value=1.2e-05  Score=56.15  Aligned_cols=135  Identities=12%  Similarity=0.103  Sum_probs=92.2

Q ss_pred             CCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEE
Q ss_conf             66088630541432331157300000468726999960511012489753154510131465556501012001570689
Q gi|254780577|r   65 PNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQS  144 (232)
Q Consensus        65 ~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~  144 (232)
                      .-.++||++|++..++++.|+...+-.=++..  .|  -|-+ +..+||++|+|..+.-.                 ...
T Consensus        12 ~i~v~APv~G~vi~L~~v~D~vFs~~~~G~G~--AI--~P~~-~~v~AP~dG~I~~i~~T-----------------~HA   69 (161)
T 1f3z_A           12 TIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGI--AI--KPTG-NKMVAPVDGTIGKIFET-----------------NHA   69 (161)
T ss_dssp             CEEEECSSCEEEEEGGGSSSHHHHTTSSCEEE--EE--EECS-SEEECSSSEEEEEECTT-----------------SSE
T ss_pred             CEEEEECCCCEEEECCCCCCHHHHCCCCCCEE--EE--ECCC-CEEEECCCEEEEEECCC-----------------CCE
T ss_conf             68999636727988330988588267812629--99--8369-98990789799998689-----------------979


Q ss_pred             EEEECCCCEEEEEEECCC----CCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECC--CCEEEEECCCEE
Q ss_conf             999708982999985157----65503651389985703866888832--------8989999639--973676229889
Q gi|254780577|r  145 LVLKTIHGNIGIVQIAGF----VARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPK--DANIRVEIGQKT  210 (232)
Q Consensus       145 ~~~~~~~~~i~~~qiag~----~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~--~~~~~V~~Gq~V  210 (232)
                      +.+++++|.-.+++++--    ...-..+.+++||++++||.+.-+-+        --.+-+.+.+  +.+..+...+.|
T Consensus        70 igi~t~~G~eiLiHiGidTv~l~G~gF~~~vk~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvv~n~~~~~~~~~~~~~v  149 (161)
T 1f3z_A           70 FSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSV  149 (161)
T ss_dssp             EEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEESCGGGCSEEEECCSEE
T ss_pred             EEEEECCCCEEEEEECCCHHHCCCCCEEEEECCCCEEECCCEEEEECHHHHHHCCCCCCEEEEEECCHHCCEEEECCCCE
T ss_conf             99994899899999764577618974089976899993898989987999986199982599997656603146247858


Q ss_pred             EEEEEEEEEEC
Q ss_conf             93077879717
Q gi|254780577|r  211 VAGETVIAEFN  221 (232)
Q Consensus       211 ~aGeTila~l~  221 (232)
                      ++|++.|-++.
T Consensus       150 ~~g~~~l~~i~  160 (161)
T 1f3z_A          150 TVGETPVIRIK  160 (161)
T ss_dssp             CTTTSEEEEEE
T ss_pred             EECCCEEEEEE
T ss_conf             62992799998


No 2  
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=98.05  E-value=3.1e-05  Score=53.42  Aligned_cols=136  Identities=10%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             CCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEE
Q ss_conf             76608863054143233115730000046872699996051101248975315451013146555650101200157068
Q gi|254780577|r   64 DPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQ  143 (232)
Q Consensus        64 ~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~  143 (232)
                      +++.++||++|++..++++.|+.-.+-.=++.  +.|.  |- -+..+||++|+|....-.                 +-
T Consensus        11 ~~~~i~aPv~G~vi~L~~V~D~vFs~~~mG~G--~aI~--P~-~~~v~AP~~G~V~~v~~T-----------------~H   68 (162)
T 1ax3_A           11 GEEVFVSPITGEIHPITDVPDQVFSGKMMGDG--FAIL--PS-EGIVVSPVRGKILNVFPT-----------------KH   68 (162)
T ss_dssp             CCSSCCCCCSEEEEEGGGSSSHHHHTCTTSEE--EEEE--EC-SSEEEESCCEEEEECCSS-----------------SS
T ss_pred             CCEEEEECCCCEEEECCCCCCHHHCCCCCCCC--EEEE--CC-CCEEECCCCEEEEEECCC-----------------CC
T ss_conf             97599934886898823197746346780274--8998--27-997983789699998568-----------------96


Q ss_pred             EEEEECCCCEEEEEEECC----CCCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECCC--C-EEEEECCC
Q ss_conf             999970898299998515----765503651389985703866888832--------89899996399--7-36762298
Q gi|254780577|r  144 SLVLKTIHGNIGIVQIAG----FVARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPKD--A-NIRVEIGQ  208 (232)
Q Consensus       144 ~~~~~~~~~~i~~~qiag----~~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~~--~-~~~V~~Gq  208 (232)
                      .+.+++++|.-.+++++-    +-..-..+++++||++++||.+.-+-+        -..+-+.+.+.  + .+......
T Consensus        69 Aigi~t~~G~evLiHiGiDTV~L~G~gF~~~V~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvvtn~~~~~~i~~~~~~  148 (162)
T 1ax3_A           69 AIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASG  148 (162)
T ss_dssp             EEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHHHHGGGSSCCCEEEEESSGGGTCEEEECCCS
T ss_pred             EEEEECCCCCEEEEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEEECCCCCEEEEECCC
T ss_conf             99999799979999986454321898318998269999899999997599998629998429999706215458882478


Q ss_pred             EEEEEEEEEEEEC
Q ss_conf             8993077879717
Q gi|254780577|r  209 KTVAGETVIAEFN  221 (232)
Q Consensus       209 ~V~aGeTila~l~  221 (232)
                      .|.+|++.|..+.
T Consensus       149 ~v~~g~~~i~~v~  161 (162)
T 1ax3_A          149 SVNREQEDIVKIE  161 (162)
T ss_dssp             EECTTCSSSEEEE
T ss_pred             CEEECCCEEEEEE
T ss_conf             7884996589997


No 3  
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=98.01  E-value=5.8e-05  Score=51.65  Aligned_cols=130  Identities=14%  Similarity=0.183  Sum_probs=85.3

Q ss_pred             CEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEE
Q ss_conf             60886305414323311573000004687269999605110124897531545101314655565010120015706899
Q gi|254780577|r   66 NLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSL  145 (232)
Q Consensus        66 ~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~  145 (232)
                      -.++||++|++..++++.|+.-.+-.=+  .=+.|.  |- -+..+||++|+|....-.                 ...+
T Consensus         8 ~~i~APv~G~vi~l~~V~D~vFs~k~mG--~G~aI~--P~-~~~v~AP~dG~V~~i~~T-----------------~HAi   65 (154)
T 2gpr_A            8 LKVLAPCDGTIITLDEVEDEVFKERMLG--DGFAIN--PK-SNDFHAPVSGKLVTAFPT-----------------KHAF   65 (154)
T ss_dssp             EEEECSSSEEEECGGGSSCHHHHTTSSC--EEEEEE--ES-SSEEECSSCEEEEECCTT-----------------CSEE
T ss_pred             EEEEECCCCEEEECCCCCCHHHCCCCCC--CEEEEE--CC-CCEEECCCCCEEEEECCC-----------------CCEE
T ss_conf             0999647738988132867363568801--629999--27-997992678299998689-----------------9799


Q ss_pred             EEECCCCEEEEEEECCCC----CCEEEEECCCCCEEECCCEEEEEEE-------CC-EEEEEECC--CCEEEEECCCEEE
Q ss_conf             997089829999851576----5503651389985703866888832-------89-89999639--9736762298899
Q gi|254780577|r  146 VLKTIHGNIGIVQIAGFV----ARRIVCWVKPTMKVEAGMRFGIIRF-------GS-RVDLFLPK--DANIRVEIGQKTV  211 (232)
Q Consensus       146 ~~~~~~~~i~~~qiag~~----arrI~~~~~~g~~v~~G~r~G~irf-------GS-~vdi~lP~--~~~~~V~~Gq~V~  211 (232)
                      .+++++|.-.+++++--.    ..--.+++++||+|++||.+.-+-+       -+ .+-+.+.+  +.++.+.....|+
T Consensus        66 gi~t~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vv~tn~~~~~~~~~~~g~V~  145 (154)
T 2gpr_A           66 GIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKTLEIVKMGEVK  145 (154)
T ss_dssp             EEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSCCCSCBCCEEEC
T ss_pred             EEECCCCCEEEEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCC
T ss_conf             99969998999997625410389736999738999959999999879999862999836999987987357773478685


Q ss_pred             EEEEEE
Q ss_conf             307787
Q gi|254780577|r  212 AGETVI  217 (232)
Q Consensus       212 aGeTil  217 (232)
                      +|++++
T Consensus       146 ~Gd~i~  151 (154)
T 2gpr_A          146 QGDVVA  151 (154)
T ss_dssp             TTCEEE
T ss_pred             CCCEEE
T ss_conf             899999


No 4  
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=95.57  E-value=0.026  Score=33.86  Aligned_cols=55  Identities=16%  Similarity=0.307  Sum_probs=42.3

Q ss_pred             EEECCCCCEEECCCEEEEEEEC-CEEEEEECCCC---EEEEECCCEEEEEEEEEEEECCC
Q ss_conf             6513899857038668888328-98999963997---36762298899307787971787
Q gi|254780577|r  168 VCWVKPTMKVEAGMRFGIIRFG-SRVDLFLPKDA---NIRVEIGQKTVAGETVIAEFNST  223 (232)
Q Consensus       168 ~~~~~~g~~v~~G~r~G~irfG-S~vdi~lP~~~---~~~V~~Gq~V~aGeTila~l~~~  223 (232)
                      ..++++||.+++||.+..+.-. ..+++.-|.+-   +++++.||.|..|+ .|+.+.+.
T Consensus        12 ~~~v~~Gd~V~~g~~l~~ie~~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~-~l~~i~~~   70 (72)
T 1z6h_A           12 KVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGD-VLLELSNS   70 (72)
T ss_dssp             EECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTC-EEEEEGGG
T ss_pred             EEECCCCCEECCCCEEEEEECCCCCCCEECCCCEEEEEEEECCCCEECCCC-EEEEEECC
T ss_conf             999279899907989999981765530588979899999778979989999-99999479


No 5  
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=94.91  E-value=0.042  Score=32.47  Aligned_cols=35  Identities=23%  Similarity=0.419  Sum_probs=29.8

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCC
Q ss_conf             898999963997367622988993077879717877
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTK  224 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~  224 (232)
                      +......||.++.+.|+.||+|.+|+ +||+++...
T Consensus       155 ~~~~~Y~lP~ga~l~V~dG~~V~~Gd-vlAkiPres  189 (190)
T 2auk_A          155 DMPAQYFLPGKAIVQLEDGVQISSGD-TLARIPQES  189 (190)
T ss_dssp             SCBCEEECCTTCEESSCTTCEECTTC-EEEEEECCC
T ss_pred             CCCEEEECCCCEEEEECCCCEECCCC-EEEECCCCC
T ss_conf             97579977999799993979986888-999885345


No 6  
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=94.52  E-value=0.08  Score=30.58  Aligned_cols=57  Identities=19%  Similarity=0.292  Sum_probs=43.5

Q ss_pred             EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCCC
Q ss_conf             651389985703866888832-89899996399---73676229889930778797178778
Q gi|254780577|r  168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTKP  225 (232)
Q Consensus       168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~~  225 (232)
                      .-++++||.+++||.+..+.- ....++.-|.+   .+++++.||.|..|+ .|+.+..+.+
T Consensus        17 ~~~v~~Gd~V~~G~~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~-~l~~ie~~~~   77 (79)
T 1iyu_A           17 ELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGD-AIIELEPAAG   77 (79)
T ss_dssp             EECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTS-EEEEEECCCS
T ss_pred             EEECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECCCC
T ss_conf             998279799908998999995671589987989999999358969989999-9999947867


No 7  
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=94.40  E-value=0.065  Score=31.18  Aligned_cols=58  Identities=21%  Similarity=0.238  Sum_probs=43.0

Q ss_pred             EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCCCC
Q ss_conf             651389985703866888832-89899996399---736762298899307787971787787
Q gi|254780577|r  168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTKPP  226 (232)
Q Consensus       168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~~~  226 (232)
                      ..++++||.|++||.+..+.= -..+++.-|.+   .+++|+.||.|..|+ +|+.+.+...+
T Consensus        27 ~~~v~~Gd~V~~g~~l~~vEt~K~~~~i~a~~~G~V~~i~v~~Gd~V~~G~-~L~~i~~~~~~   88 (99)
T 2ejm_A           27 KVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHT-PLVEFEEEESD   88 (99)
T ss_dssp             EECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTC-BCEEECCCCSC
T ss_pred             EEECCCCCEECCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCEECCCC-EEEEEECCCCC
T ss_conf             998289899868998999973762379984757808799728989968999-89999638877


No 8  
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=94.07  E-value=0.13  Score=29.21  Aligned_cols=51  Identities=20%  Similarity=0.302  Sum_probs=36.1

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE
Q ss_conf             51389985703866888832-89899996399---736762298899307787971
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF  220 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l  220 (232)
                      .++++||.+++||.+..+.- ...+++.-|.+   .+++++.||.|..|+ .|+.+
T Consensus        19 ~~v~~Gd~V~~g~~l~~iE~~K~~~~i~ap~~G~I~~i~v~~G~~V~~G~-~L~~I   73 (74)
T 2d5d_A           19 VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQ-PLIEL   73 (74)
T ss_dssp             ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTC-EEEEE
T ss_pred             EECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEE
T ss_conf             99489999938988999993561269987999899899948959989999-99993


No 9  
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=93.55  E-value=0.1  Score=29.90  Aligned_cols=57  Identities=19%  Similarity=0.154  Sum_probs=38.0

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCCC--EEEEECCCEEEEEEEEEEEECCCCCC
Q ss_conf             51389985703866888832-898999963997--36762298899307787971787787
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA--NIRVEIGQKTVAGETVIAEFNSTKPP  226 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~--~~~V~~Gq~V~aGeTila~l~~~~~~  226 (232)
                      .++++|+.+++||.++.+.- -..+++.-|.+-  +..++.||.|.+|+ +|+++....++
T Consensus        19 ~~V~~Gd~V~~G~~l~~iEa~K~~~~I~ap~sG~I~~~v~~Gd~V~~G~-~l~~ie~~d~e   78 (84)
T 2kcc_A           19 YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGC-VVARLELDDLE   78 (84)
T ss_dssp             ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECSCTTCCCCTTC-CCEEEECSCSC
T ss_pred             EEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCEECCCC-EEEEEECCCCC
T ss_conf             9957989991798699998474478998688989999988989999999-99999458851


No 10 
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.40  E-value=0.22  Score=27.70  Aligned_cols=28  Identities=25%  Similarity=0.300  Sum_probs=13.5

Q ss_pred             CCCCCEEEEEECCEEEEEEECCCCCCCH
Q ss_conf             1101248975315451013146555650
Q gi|254780577|r  104 IFDCHVNRMPIGGEVIKSVHRNGQFMNA  131 (232)
Q Consensus       104 ~~dvH~~raP~~G~V~~~~~~~G~~~~a  131 (232)
                      -.|-+..++|+.|+|.+..-.+|....+
T Consensus        14 ~~dp~~v~ap~~G~i~~~~V~~Gd~V~~   41 (100)
T 2dn8_A           14 ENDPTVLRSPSAGKLTQYTVEDGGHVEA   41 (100)
T ss_dssp             CCCTTEEECSSCEEEEEESSCTTEEECT
T ss_pred             CCCCCEEECCCCEEEEEEEECCCCEECC
T ss_conf             8899888789986999999379899858


No 11 
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=93.32  E-value=0.11  Score=29.64  Aligned_cols=52  Identities=21%  Similarity=0.172  Sum_probs=39.6

Q ss_pred             EEECCCCCEEECCCEEEEEEEC-CEEEEEECCC---CEEEEECCCEEEEEEEEEEEE
Q ss_conf             6513899857038668888328-9899996399---736762298899307787971
Q gi|254780577|r  168 VCWVKPTMKVEAGMRFGIIRFG-SRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF  220 (232)
Q Consensus       168 ~~~~~~g~~v~~G~r~G~irfG-S~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l  220 (232)
                      ..++++||++++||.++.+.-- ...++.-|.+   .+++|+.||.|..|+ .|..+
T Consensus        24 ~~~V~~Gd~V~~g~~l~~iEamK~~~~i~a~~~G~V~~i~v~~G~~V~~G~-~L~~i   79 (80)
T 1bdo_A           24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDE-PLVVI   79 (80)
T ss_dssp             CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTC-EEEEE
T ss_pred             CCEECCCCEEECCCEEEEEEECCCHHHCCCCCCEEEEEEEECCCCEECCCC-EEEEE
T ss_conf             853268999966878999997620120659999899899868979989999-99997


No 12 
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=93.28  E-value=0.14  Score=29.01  Aligned_cols=53  Identities=19%  Similarity=0.240  Sum_probs=41.9

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC
Q ss_conf             51389985703866888832-89899996399---73676229889930778797178
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS  222 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~  222 (232)
                      -+.++||.+++||.+--+.- -..+++.-|.+   .+++++.||.|..|+ +||++.+
T Consensus        21 w~v~~Gd~V~~gd~l~~vEtdK~~~ei~ap~~G~v~~i~v~~G~~v~~G~-~l~~i~~   77 (79)
T 1ghj_A           21 WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGE-LLGKLTE   77 (79)
T ss_dssp             CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTC-EEEEECC
T ss_pred             EECCCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEECCCC-EEEEEEC
T ss_conf             99279899908998999995865899983468999999848999978999-9999947


No 13 
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.18  E-value=0.29  Score=26.82  Aligned_cols=56  Identities=21%  Similarity=0.216  Sum_probs=42.1

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC--CEEEEECCCEEEEEEEEEEEECCCCC
Q ss_conf             51389985703866888832-89899996399--73676229889930778797178778
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD--ANIRVEIGQKTVAGETVIAEFNSTKP  225 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~--~~~~V~~Gq~V~aGeTila~l~~~~~  225 (232)
                      -.+++|+.|++||.+..+.= -..+++.-|.+  .+..++.||.|..|+ +|+.+....|
T Consensus        31 ~~V~~Gd~V~~Gd~l~~iEt~K~~~~V~A~~~G~i~~~v~~G~~V~~G~-~l~~ie~dd~   89 (100)
T 2dn8_A           31 YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGC-VVARLELDDP   89 (100)
T ss_dssp             ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEEECSCTTCEECSSC-EEEEECCSCS
T ss_pred             EEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCEECCCC-EEEEEECCCC
T ss_conf             9937989985899799998273268997788989999978989999999-9999966886


No 14 
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=93.01  E-value=0.078  Score=30.64  Aligned_cols=55  Identities=11%  Similarity=0.123  Sum_probs=41.6

Q ss_pred             EECCCCCEEECCCEEEEEEEC-CEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCC
Q ss_conf             513899857038668888328-9899996399---7367622988993077879717877
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRFG-SRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTK  224 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irfG-S~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~  224 (232)
                      -++++|+.+++||.+.-+.-. ..+++.-|.+   .+++++.||.|..|+ .|+.+....
T Consensus        24 w~v~~Gd~V~~Gd~l~~iEt~K~~~ei~a~~~G~I~~i~v~eG~~V~~G~-~L~~Ie~e~   82 (93)
T 1k8m_A           24 WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGK-PLVDIETEA   82 (93)
T ss_dssp             ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTS-EEEEEECSC
T ss_pred             EEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECCC
T ss_conf             99089799988998999983772897883889999999538999988999-999997778


No 15 
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=92.85  E-value=0.23  Score=27.52  Aligned_cols=58  Identities=21%  Similarity=0.227  Sum_probs=42.3

Q ss_pred             CCCCCCEEEEECCCCCEEECCCEEEEE---EECCEEEEEECCCC---EEEEECCCEEEEEEEEEEEE
Q ss_conf             157655036513899857038668888---32898999963997---36762298899307787971
Q gi|254780577|r  160 AGFVARRIVCWVKPTMKVEAGMRFGII---RFGSRVDLFLPKDA---NIRVEIGQKTVAGETVIAEF  220 (232)
Q Consensus       160 ag~~arrI~~~~~~g~~v~~G~r~G~i---rfGS~vdi~lP~~~---~~~V~~Gq~V~aGeTila~l  220 (232)
                      |.+-..-+...+++||+|++||.+-.+   |+  -..|.-|.+-   +++|++||.|.+|+ +|.+|
T Consensus       617 APMPG~Vv~v~V~~Gd~V~aGq~L~VLEAMKM--E~~I~Ap~dG~V~~I~v~~Gd~V~~G~-~L~~l  680 (681)
T 3n6r_A          617 CPMPGLIVKVDVEVGQEVQEGQALCTIEAMKM--ENILRAEKKGVVAKINASAGNSLAVDD-VIMEF  680 (681)
T ss_dssp             CCSCEEEEEECCCTTCEECTTCEEEEEECSSC--EEEEECSSSEEEEEECCCTTCEECTTC-EEEEE
T ss_pred             CCCCCEEEEEECCCCCEECCCCEEEEEEEEEC--CCEEECCCCEEEEEECCCCCCCCCCCC-EEEEE
T ss_conf             89997599994599499889898999999703--557983899798363269889979999-99996


No 16 
>3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=92.81  E-value=0.21  Score=27.73  Aligned_cols=56  Identities=16%  Similarity=0.140  Sum_probs=43.3

Q ss_pred             ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCC-EEEEEEEEEEEECCCCCC
Q ss_conf             1389985703866888832-89899996399---736762298-899307787971787787
Q gi|254780577|r  170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQ-KTVAGETVIAEFNSTKPP  226 (232)
Q Consensus       170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq-~V~aGeTila~l~~~~~~  226 (232)
                      +.++||.+++||.+--+.- -..+++.-|.+   .++.+++|| .|..|+ .||.+.+...+
T Consensus        26 ~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~eGd~~v~vG~-~ia~i~~~~ed   86 (87)
T 3crk_C           26 EKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGT-PLCIIVEKEAD   86 (87)
T ss_dssp             CSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTC-EEEEEESSSTT
T ss_pred             ECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEEEECCCCEEECCCC-EEEEEECCCCC
T ss_conf             63999999789979999907788868718999999999778982975999-89999566786


No 17 
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=92.67  E-value=0.08  Score=30.59  Aligned_cols=45  Identities=7%  Similarity=0.191  Sum_probs=19.8

Q ss_pred             CCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEE
Q ss_conf             76608863054143233115730000046872699996051101248
Q gi|254780577|r   64 DPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVN  110 (232)
Q Consensus        64 ~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~  110 (232)
                      .++.++||+||+|+.+-...-  ...+...+...|-|-...--|..+
T Consensus        43 ~~~~v~AP~dG~V~~i~~T~H--Aigi~t~~G~eiLIHiGidTV~L~   87 (154)
T 2gpr_A           43 KSNDFHAPVSGKLVTAFPTKH--AFGIQTKSGVEILLHIGLDTVSLD   87 (154)
T ss_dssp             SSSEEECSSCEEEEECCTTCS--EEEEECTTSCEEEEECSSSGGGGT
T ss_pred             CCCEEECCCCCEEEEECCCCC--EEEEECCCCCEEEEEECCCHHHCC
T ss_conf             799799267829999868997--999996999899999762541038


No 18 
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=92.60  E-value=0.083  Score=30.49  Aligned_cols=97  Identities=15%  Similarity=0.263  Sum_probs=42.4

Q ss_pred             EEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCE----EECCCEEEE
Q ss_conf             8975315451013146555650101200157068999970898299998515765503651389985----703866888
Q gi|254780577|r  110 NRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMK----VEAGMRFGI  185 (232)
Q Consensus       110 ~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~----v~~G~r~G~  185 (232)
                      ..||++|++......+-..++.-+     ..+=..+.-+  ++.     +-+.+..+|..-...+..    -..|-++ +
T Consensus        15 v~APv~G~vi~L~~v~D~vFs~~~-----~G~G~AI~P~--~~~-----v~AP~dG~I~~i~~T~HAigi~t~~G~ei-L   81 (161)
T 1f3z_A           15 IIAPLSGEIVNIEDVPDVVFAEKI-----VGDGIAIKPT--GNK-----MVAPVDGTIGKIFETNHAFSIESDSGVEL-F   81 (161)
T ss_dssp             EECSSCEEEEEGGGSSSHHHHTTS-----SCEEEEEEEC--SSE-----EECSSSEEEEEECTTSSEEEEEETTSCEE-E
T ss_pred             EEECCCCEEEECCCCCCHHHHCCC-----CCCEEEEECC--CCE-----EEECCCEEEEEECCCCCEEEEEECCCCEE-E
T ss_conf             996367279883309885882678-----1262999836--998-----99078979999868997999994899899-9


Q ss_pred             EEECCEEEEEEC-CCCEEEEECCCEEEEEEEEEEEEC
Q ss_conf             832898999963-997367622988993077879717
Q gi|254780577|r  186 IRFGSRVDLFLP-KDANIRVEIGQKTVAGETVIAEFN  221 (232)
Q Consensus       186 irfGS~vdi~lP-~~~~~~V~~Gq~V~aGeTila~l~  221 (232)
                      +..|-.. +-+. +.++.+|+.||+|++|+ .|.+++
T Consensus        82 iHiGidT-v~l~G~gF~~~vk~Gd~V~~G~-~L~~~D  116 (161)
T 1f3z_A           82 VHFGIDT-VELKGEGFKRIAEEGQRVKVGD-TVIEFD  116 (161)
T ss_dssp             EECSBSG-GGGTTTTEEECSCTTCEECTTC-EEEEEC
T ss_pred             EEECCCH-HHCCCCCEEEEECCCCEEECCC-EEEEEC
T ss_conf             9976457-7618974089976899993898-989987


No 19 
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A*
Probab=92.23  E-value=0.59  Score=24.79  Aligned_cols=62  Identities=16%  Similarity=0.234  Sum_probs=43.0

Q ss_pred             CCCCCEEE-EECCCCCEEECCCEEEEEEECC--EEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCC
Q ss_conf             57655036-5138998570386688883289--899996399---7367622988993077879717877
Q gi|254780577|r  161 GFVARRIV-CWVKPTMKVEAGMRFGIIRFGS--RVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTK  224 (232)
Q Consensus       161 g~~arrI~-~~~~~g~~v~~G~r~G~irfGS--~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~  224 (232)
                      ..+..++. ..+++||+|++||.+-.+. --  -+.|.-|.+   .+++|+.||.|.+|+ .|..+.++.
T Consensus      1082 Ap~~GnVwkv~V~~Gd~V~~Gd~l~IlE-AMKME~~V~Ap~~G~V~~I~v~~G~~V~aGq-~LvvIe~~~ 1149 (1150)
T 3hbl_A         1082 AQMPGSVTEVKVSVGETVKANQPLLITE-AMKMETTIQAPFDGVIKQVTVNNGDTIATGD-LLIEIEKAT 1149 (1150)
T ss_dssp             CSSSEEEEEECCCTTCEECTTCEEEEEE-SSSCEEEEECSSSEEEEEECCCTTCEECTTB-EEEEEC---
T ss_pred             CCCCEEEEEEEECCCCEECCCCEEEEEE-HHCCCCCCCCCCCEEEEEEEECCCCEECCCC-EEEEEEECC
T ss_conf             6898478999808999979999899996-5208671538999189799818959878999-799998478


No 20 
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=91.99  E-value=0.35  Score=26.32  Aligned_cols=51  Identities=18%  Similarity=0.226  Sum_probs=30.5

Q ss_pred             EECCCCCEEECCCEEEEEEECC-EEEEEECCC---CEEEEECCCEEEEEEEEEEEE
Q ss_conf             5138998570386688883289-899996399---736762298899307787971
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRFGS-RVDLFLPKD---ANIRVEIGQKTVAGETVIAEF  220 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irfGS-~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l  220 (232)
                      .++++||++++||.+..+.=-- ..++.-|.+   .+++|+.||.|..|+ .|..+
T Consensus        22 ~~V~~Gd~V~~Gq~l~~iEamK~~~~v~ap~~G~I~~i~v~~G~~V~~G~-~L~~I   76 (77)
T 1dcz_A           22 ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQ-GLIKI   76 (77)
T ss_dssp             ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTS-EEEEE
T ss_pred             EECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEE
T ss_conf             98389899869998999994351179977999799899818969979999-99994


No 21 
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=91.47  E-value=0.2  Score=27.90  Aligned_cols=54  Identities=22%  Similarity=0.284  Sum_probs=42.0

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC
Q ss_conf             51389985703866888832-89899996399---736762298899307787971787
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST  223 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~  223 (232)
                      -+.++||.+++||.+-.+.- -..+++.-|.+   .++.++.||.|..|+ +|+.+...
T Consensus        20 ~~v~~Gd~V~~g~~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G~~v~~G~-~l~~ie~~   77 (80)
T 1qjo_A           20 VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGS-LIMIFEVE   77 (80)
T ss_dssp             CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTC-CCEEEESC
T ss_pred             EEECCCCEECCCCEEEEEEECCCCEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECC
T ss_conf             99179799989998999990754519984652799999958989958999-99999646


No 22 
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=91.35  E-value=0.4  Score=25.92  Aligned_cols=30  Identities=27%  Similarity=0.562  Sum_probs=18.1

Q ss_pred             EEECCC---CEEEEECCCEEEEEEEEEEEECCCC
Q ss_conf             996399---7367622988993077879717877
Q gi|254780577|r  194 LFLPKD---ANIRVEIGQKTVAGETVIAEFNSTK  224 (232)
Q Consensus       194 i~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~  224 (232)
                      |.-|..   .++.|+.||+|++|++ |+-+..=|
T Consensus       615 l~APMPG~Vv~v~V~~Gd~V~aGq~-L~VLEAMK  647 (681)
T 3n6r_A          615 LLCPMPGLIVKVDVEVGQEVQEGQA-LCTIEAMK  647 (681)
T ss_dssp             EECCSCEEEEEECCCTTCEECTTCE-EEEEECSS
T ss_pred             EECCCCCEEEEEECCCCCEECCCCE-EEEEEEEE
T ss_conf             9789997599994599499889898-99999970


No 23 
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=90.79  E-value=0.16  Score=28.49  Aligned_cols=54  Identities=13%  Similarity=0.171  Sum_probs=41.9

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC
Q ss_conf             51389985703866888832-89899996399---736762298899307787971787
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST  223 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~  223 (232)
                      -++++|+.+++||.+--+.- -..+++.-|.+   .+++++.||.|..|+ .|+.+...
T Consensus        21 ~~v~~Gd~V~~Gd~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~-~l~~ie~~   78 (81)
T 1gjx_A           21 VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGG-LIVVVEAE   78 (81)
T ss_dssp             ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSS-CCCEECCS
T ss_pred             EECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECC
T ss_conf             98289799908998999993883799980554799999828989988999-99999456


No 24 
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.52  E-value=0.48  Score=25.36  Aligned_cols=56  Identities=27%  Similarity=0.184  Sum_probs=41.8

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCC-EEEEEEEEEEEECCCCC
Q ss_conf             51389985703866888832-89899996399---736762298-89930778797178778
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQ-KTVAGETVIAEFNSTKP  225 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq-~V~aGeTila~l~~~~~  225 (232)
                      -++++||.+++||.+--+.= -..+++.-|.+   .++.|+.|| .|..|+ +||.+.+...
T Consensus        27 W~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~~Gd~~v~vG~-~i~~i~~~~e   87 (98)
T 2dnc_A           27 WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGS-LIGLIVEEGE   87 (98)
T ss_dssp             ESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSC-EEEEEECTTS
T ss_pred             EEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCC-EEEEEECCCC
T ss_conf             990899999389989999858389999748998999999768982977999-8999903877


No 25 
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=90.51  E-value=0.092  Score=30.17  Aligned_cols=54  Identities=22%  Similarity=0.284  Sum_probs=38.1

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC
Q ss_conf             51389985703866888832-89899996399---736762298899307787971787
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST  223 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~  223 (232)
                      .++++|+.+++||.+..+.- ...+++.-|.+   .+++|+.||.|..|+ .|+++...
T Consensus        16 ~~v~~Gd~V~~gd~l~~iE~~K~~~~v~a~~~G~v~~i~v~~Gd~V~~G~-~l~~ie~~   73 (85)
T 2k7v_A           16 VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGS-LIMIFEVE   73 (85)
T ss_dssp             CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTS-EEEEEECC
T ss_pred             EEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECC
T ss_conf             99279999917998999981883799863789899899968989979999-99999748


No 26 
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens}
Probab=89.82  E-value=0.088  Score=30.31  Aligned_cols=51  Identities=20%  Similarity=0.311  Sum_probs=36.6

Q ss_pred             EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE
Q ss_conf             51389985703866888832-89899996399---736762298899307787971
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF  220 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l  220 (232)
                      .++++|+.+++||.+..+.= -...++.-|.+   .++.|+.||.|..|+ .|+.+
T Consensus        39 i~V~~Gd~V~~G~~l~~iEsmK~~~~v~Ap~~G~V~~i~v~~Gd~V~~G~-~L~~I   93 (94)
T 2jku_A           39 VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGD-LLVEL   93 (94)
T ss_dssp             ECCCTTCCCCTTCCCEEEEC------------------------------------
T ss_pred             EECCCCCEECCCCEEEEEECCCCCEEEEECCCEEEEEEEECCCCEECCCC-EEEEE
T ss_conf             98189999958987999980365389993889999899868979979999-99997


No 27 
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=89.67  E-value=0.54  Score=25.04  Aligned_cols=67  Identities=16%  Similarity=0.200  Sum_probs=31.9

Q ss_pred             CEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEE
Q ss_conf             2489753154510131465556501012001570689999708982999985157655036513899857038668888
Q gi|254780577|r  108 HVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGII  186 (232)
Q Consensus       108 H~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~i  186 (232)
                      ...+||+.|++.+..-.+|....+...         ...+++.+..+.+   .......|....++|+.+..|+.+..+
T Consensus         6 ~~v~ap~~G~i~~~~V~~Gd~V~~G~~---------l~~iEa~K~~~~I---~ap~sG~I~~~v~~Gd~V~~G~~l~~i   72 (84)
T 2kcc_A            6 TVLRSPSAGKLTQYTVEDGGHVEAGSS---------YAEMEVMKMIMTL---NVQERGRVKYIKRPGAVLEAGCVVARL   72 (84)
T ss_dssp             TEECCSSSCCEEEESSCTTEEECTTCE---------EEEEECSSCEEEE---ECSSSEEEEECSCTTCCCCTTCCCEEE
T ss_pred             CEEECCCCEEEEEEEECCCCEECCCCE---------EEEEECCCEEEEE---ECCCCEEEEEEECCCCEECCCCEEEEE
T ss_conf             879889885999999579899917986---------9999847447899---868898999998898999999999999


No 28 
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42}
Probab=89.46  E-value=0.57  Score=24.90  Aligned_cols=55  Identities=22%  Similarity=0.264  Sum_probs=38.5

Q ss_pred             CCCCCEEE-EECCCCCEEECCCEEEEE---EECCEEEEEECCC---CEEEEECCCEEEEEEEEE
Q ss_conf             57655036-513899857038668888---3289899996399---736762298899307787
Q gi|254780577|r  161 GFVARRIV-CWVKPTMKVEAGMRFGII---RFGSRVDLFLPKD---ANIRVEIGQKTVAGETVI  217 (232)
Q Consensus       161 g~~arrI~-~~~~~g~~v~~G~r~G~i---rfGS~vdi~lP~~---~~~~V~~Gq~V~aGeTil  217 (232)
                      ..+..++. ..+++||+|++||..-.+   |+  -..|.-|.+   .+++|+.||.|.+|++++
T Consensus      1100 AP~~GnVWKV~Vk~GD~VkaGq~L~ILEAMKM--Ei~V~AP~aG~V~~I~v~~Gd~V~aGq~Lv 1161 (1165)
T 2qf7_A         1100 APMPGVISRVFVSSGQAVNAGDVLVSIEAMKM--ETAIHAEKDGTIAEVLVKAGDQIDAKDLLA 1161 (1165)
T ss_dssp             CSSCEEEEEECCSSCCCC---CEEEEEEC-----CEEEECCSSCCCCEECCCSSCEECTTBEEE
T ss_pred             CCCCEEEEEEEECCCCEECCCCEEEEEEHHHC--CCCCCCCCCEEEEEEEECCCCEECCCCEEE
T ss_conf             89996899999799999799998999966308--672328998399799837959978999899


No 29 
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=88.76  E-value=0.74  Score=24.12  Aligned_cols=60  Identities=13%  Similarity=0.108  Sum_probs=43.2

Q ss_pred             CEEEE-ECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCC-EEEEEEEEEEEECCCCC
Q ss_conf             50365-1389985703866888832-898999963997---36762298-89930778797178778
Q gi|254780577|r  165 RRIVC-WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQ-KTVAGETVIAEFNSTKP  225 (232)
Q Consensus       165 rrI~~-~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq-~V~aGeTila~l~~~~~  225 (232)
                      ..|+- ..++||.|++||.+.-+.- -..+++.-|.+-   ++.|+.|+ .|.-|+ +||.+.+...
T Consensus        42 g~I~~W~vk~GD~V~~gd~L~evETDKa~~EI~A~~~G~l~~i~v~eGd~~v~vG~-~Ia~I~~~~~  107 (128)
T 1y8o_B           42 GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGT-PLCIIVEKEA  107 (128)
T ss_dssp             EEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTC-EEEEEESSGG
T ss_pred             EEEEEEEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCC-EEEEEECCCC
T ss_conf             99989995799998089979999828657988426787999999667983881899-8999934776


No 30 
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=87.42  E-value=1.4  Score=22.24  Aligned_cols=62  Identities=16%  Similarity=0.209  Sum_probs=45.2

Q ss_pred             EECCCCCCEEE-EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE
Q ss_conf             85157655036-51389985703866888832-89899996399---736762298899307787971
Q gi|254780577|r  158 QIAGFVARRIV-CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF  220 (232)
Q Consensus       158 qiag~~arrI~-~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l  220 (232)
                      ++++.+...++ ..+++||+|++||.+-.+.- -=-..|.-|.+   .++.|+.||.|.+|+ +|..+
T Consensus       651 ~V~APmpG~V~~v~V~~Gd~V~~G~~l~vlEAMKMEt~I~Ap~~G~V~~I~V~~gd~V~~gd-lL~~i  717 (718)
T 3bg3_A          651 QIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDD-LILEI  717 (718)
T ss_dssp             CEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSC-EEECB
T ss_pred             EECCCCCCEEEEEEECCCCEECCCCEEEEEEHHCCCCEECCCCCCEEEEEEECCCCEECCCC-EEEEE
T ss_conf             43389994379999699998799999999974108650338999189899978989888998-89996


No 31 
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=86.14  E-value=1.1  Score=23.01  Aligned_cols=53  Identities=17%  Similarity=0.130  Sum_probs=39.0

Q ss_pred             ECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCCE-EEEEEEEEEEECCC
Q ss_conf             1389985703866888832-898999963997---367622988-99307787971787
Q gi|254780577|r  170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQK-TVAGETVIAEFNST  223 (232)
Q Consensus       170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq~-V~aGeTila~l~~~  223 (232)
                      ++++||.|++||.+--+.- -..+++.-|.+-   ++.++.||. |..|+ +||.+.+.
T Consensus        28 ~v~~Gd~V~~gd~l~evETdKa~~ev~a~~~G~l~~ilv~eGd~~v~vG~-~ia~i~~~   85 (108)
T 2dne_A           28 EKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGA-IICITVGK   85 (108)
T ss_dssp             SSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTC-EEEEEESC
T ss_pred             EECCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCCEECCCC-EEEEEECC
T ss_conf             93699998079989999838576898607896999999667984876999-89999248


No 32 
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=85.32  E-value=1.5  Score=21.99  Aligned_cols=33  Identities=21%  Similarity=0.303  Sum_probs=22.0

Q ss_pred             EEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC
Q ss_conf             899996399---736762298899307787971787
Q gi|254780577|r  191 RVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST  223 (232)
Q Consensus       191 ~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~  223 (232)
                      ...+.-|-+   .+..++.||.|.+|+|.|+.+...
T Consensus        67 ~~~I~AP~~G~V~~~~~~~G~~V~~g~~~l~~I~~~  102 (116)
T 2k32_A           67 HTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNL  102 (116)
T ss_dssp             EEEEECSSSEEECCCSCCTTCEECTTTSCCEEEECS
T ss_pred             CCEEECCCCEEEEEEECCCCCEECCCCCEEEEEECC
T ss_conf             789988988799989879999888999548999779


No 33 
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=84.67  E-value=0.1  Score=29.82  Aligned_cols=52  Identities=12%  Similarity=0.112  Sum_probs=39.1

Q ss_pred             ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC
Q ss_conf             1389985703866888832-89899996399---73676229889930778797178
Q gi|254780577|r  170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS  222 (232)
Q Consensus       170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~  222 (232)
                      +.++|+.+++||.+--+.- -..+++.-|.+   .++++++||.|..|+ +||++.+
T Consensus        23 ~v~~Gd~V~~gd~l~eiEtdK~~~ei~a~~~G~l~~i~v~~G~~v~vG~-~l~~i~e   78 (80)
T 1pmr_A           23 HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQ-ILGRLRE   78 (80)
T ss_dssp             CCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSS-EEEBCCC
T ss_pred             EECCCCEECCCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEECCCC-EEEEEEC
T ss_conf             9079899879998999993865899870368999999868999987999-9999979


No 34 
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=84.31  E-value=2  Score=21.24  Aligned_cols=22  Identities=36%  Similarity=0.333  Sum_probs=14.0

Q ss_pred             EEEEECCCEEEEEEEEEEEECCC
Q ss_conf             36762298899307787971787
Q gi|254780577|r  201 NIRVEIGQKTVAGETVIAEFNST  223 (232)
Q Consensus       201 ~~~V~~Gq~V~aGeTila~l~~~  223 (232)
                      ++.|+.||+|+.|| +||+..++
T Consensus       283 ~~~V~~G~~V~~Gq-~Ig~vG~T  304 (361)
T 2gu1_A          283 KILVKKGQLVKRGQ-KIALAGAT  304 (361)
T ss_dssp             EECCCTTCEECTTC-EEEECCCC
T ss_pred             CCCCCCCCEECCCC-EEEEECCC
T ss_conf             11338899999799-99987688


No 35 
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transport; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=81.70  E-value=0.46  Score=25.51  Aligned_cols=28  Identities=21%  Similarity=0.411  Sum_probs=24.4

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEEE
Q ss_conf             8989999639973676229889930778
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGETV  216 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi  216 (232)
                      |..+.-.+|.+-++.|++||+|++|+.+
T Consensus       200 Ge~v~y~IP~G~~L~V~eGd~VkaGq~L  227 (249)
T 1ci3_M          200 GTTIVDKIPAGPELIVSEGEEVAAGAAL  227 (249)
T ss_dssp             SCEEEEEECSSSCBCCCTTCEECTTCBS
T ss_pred             CCEEEEECCCCCEEEECCCCEEECCCCC
T ss_conf             9799997699981577789998089842


No 36 
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=81.25  E-value=0.4  Score=25.90  Aligned_cols=18  Identities=11%  Similarity=0.252  Sum_probs=11.4

Q ss_pred             EECCCCCEEECCCEEEEE
Q ss_conf             513899857038668888
Q gi|254780577|r  169 CWVKPTMKVEAGMRFGII  186 (232)
Q Consensus       169 ~~~~~g~~v~~G~r~G~i  186 (232)
                      ..++.|+.++.||-+.-+
T Consensus       168 l~V~dG~~V~~GdvlAki  185 (190)
T 2auk_A          168 VQLEDGVQISSGDTLARI  185 (190)
T ss_dssp             ESSCTTCEECTTCEEEEE
T ss_pred             EEECCCCEECCCCEEEEC
T ss_conf             999397998688899988


No 37 
>1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1
Probab=81.08  E-value=0.5  Score=25.27  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=24.1

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEEE
Q ss_conf             8989999639973676229889930778
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGETV  216 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi  216 (232)
                      |..++-.+|.+-++.|++||.|++|+.+
T Consensus       201 Ge~v~~~IP~G~~LiV~eGd~VkaGq~L  228 (292)
T 1q90_A          201 GEVVVDKIPAGPDLIVKEGQTVQADQPL  228 (292)
T ss_dssp             SCEEEEEECSSSCBCCCTTCEECTTCBS
T ss_pred             CCEEEEECCCCCEEEECCCCEEECCCCC
T ss_conf             9889997489997896689998089803


No 38 
>3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29}
Probab=80.50  E-value=1.3  Score=22.38  Aligned_cols=67  Identities=7%  Similarity=0.014  Sum_probs=36.5

Q ss_pred             EEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEEEE
Q ss_conf             48975315451013146555650101200157068999970898299998515765503651389985703866888832
Q gi|254780577|r  109 VNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIRF  188 (232)
Q Consensus       109 ~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~irf  188 (232)
                      -.+||.+|+|....+..+-.           +.-..+.+...++......+.-+...++  .+++||.|++||.||..--
T Consensus       204 pv~A~~~G~V~~~~~~~~~~-----------~~~~~~~i~~~~g~~~~~~y~~~~~~~~--~v~~G~~V~~G~~ig~~G~  270 (334)
T 3csq_A          204 PYYAPCDCTCVWRGDASAYL-----------AWTSDKEVMCADGSVRYITWVNVHESPL--PFDVGKKLKKGDLMGHTGI  270 (334)
T ss_dssp             EEECSSSEEEEEEETTTTEE-----------EEEESSCEECTTSCEECEEEEEECCSSC--CCCTTCEECTTSEEEECBC
T ss_pred             CEEECCCEEEEEEEECCCCC-----------CCCCEEEEEECCCCEEEEEEEEECCCCC--CCCCCCEECCCCEEEEECC
T ss_conf             58978998999997268755-----------3178699997899805999997344645--6888989768977997578


No 39 
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=77.85  E-value=0.6  Score=24.74  Aligned_cols=28  Identities=21%  Similarity=0.334  Sum_probs=23.8

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEEE
Q ss_conf             8989999639973676229889930778
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGETV  216 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi  216 (232)
                      |..++-.+|.+.++.|++||+|++|+.+
T Consensus       200 Ge~v~y~IP~G~~L~V~eGD~V~aGq~L  227 (249)
T 2jxm_B          200 GDAVVTSILPGPELIVAVGDTVEAGQLL  227 (249)
T ss_dssp             SCCEEEEECSSSCBCCCTTCEECTTCBS
T ss_pred             CCEEEEECCCCCEEEECCCCEECCCCCC
T ss_conf             9889997489981477899998589842


No 40 
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=74.64  E-value=4  Score=19.21  Aligned_cols=59  Identities=14%  Similarity=0.006  Sum_probs=38.3

Q ss_pred             EEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEE
Q ss_conf             489753154510131465556501012001570689999708982999985157655036513899857038668888
Q gi|254780577|r  109 VNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGII  186 (232)
Q Consensus       109 ~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~i  186 (232)
                      -.+|+.+|+|....+..+-              -..+.+++.++....  ++-+  .++ ..+++|+.|++||.+|.+
T Consensus       141 PV~A~~dG~V~~~g~~~~~--------------G~~V~I~h~~g~~t~--Y~HL--~~~-~~V~~G~~V~~Gq~IG~v  199 (252)
T 3nyy_A          141 PVVSMTDGVVTEKGWLEKG--------------GWRIGITAPTGAYFY--YAHL--DSY-AELEKGDPVKAGDLLGYM  199 (252)
T ss_dssp             EEECSSCEEEEEEEEETTT--------------EEEEEEECTTSCEEE--EEEE--SEE-CSCCTTCEECTTCEEEEC
T ss_pred             EEEEEECEEEEEEEECCCC--------------CEEEEEEECCCCEEE--EEEC--CCC-CCCCCCCEECCCCEEEEE
T ss_conf             4899656799985574999--------------809999968988898--5135--655-556889999868999982


No 41 
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=73.24  E-value=1.7  Score=21.64  Aligned_cols=49  Identities=16%  Similarity=0.211  Sum_probs=25.4

Q ss_pred             CCCCEEEEECCCCEEEEEECCCCCH---------HHCCCCCEEEEEEEECCCCCCEEE
Q ss_conf             2766088630541432331157300---------000468726999960511012489
Q gi|254780577|r   63 IDPNLLISPADGLVSAICEMSPPPE---------LELENEVMLRLSIFMNIFDCHVNR  111 (232)
Q Consensus        63 ~~~~~ivSPaDG~V~~i~~~~~~~~---------~~~~~~~~~~I~Ifls~~dvH~~r  111 (232)
                      .+...+.||.||.+..+........         ..........+....+..+....+
T Consensus       151 ~~~~~i~a~~~~~~~~~~~~~G~~v~~~~~~~~~~~i~~~~~~~~~~~v~e~~~~~v~  208 (341)
T 3fpp_A          151 LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLK  208 (341)
T ss_dssp             TTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCSEEEEEEECCGGGSTTCC
T ss_pred             CCCEEEECCCCCEEEEEEECCCCEEECCCCCCEEEEEECCCCEEEEEEECHHHHHHHH
T ss_conf             3550684686762778982579888337876147899238853799865899999731


No 42 
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=72.93  E-value=4.4  Score=18.94  Aligned_cols=60  Identities=18%  Similarity=0.087  Sum_probs=31.6

Q ss_pred             EEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEE
Q ss_conf             489753154510131465556501012001570689999708982999985157655036513899857038668888
Q gi|254780577|r  109 VNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGII  186 (232)
Q Consensus       109 ~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~i  186 (232)
                      -.+|+.+|+|....+....             --..+.++..++.... .++-  ..++  .+++||.|++||.||.+
T Consensus       197 pV~A~~dG~Vv~~g~~~~g-------------~G~~ViI~h~~g~~~t-~Y~H--L~~i--~Vk~Gq~V~~Gq~IG~v  256 (291)
T 1qwy_A          197 PVYSLTDGTVVQAGWSNYG-------------GGNQVTIKEANSNNYQ-WYMH--NNRL--TVSAGDKVKAGDQIAYS  256 (291)
T ss_dssp             EEECSSSEEEEEEEEETTT-------------TEEEEEEEETTSSEEE-EEEE--ESEE--CCCTTCEECTTCEEEEC
T ss_pred             EEEECCCEEEEEEEECCCC-------------CCEEEEEEECCCCEEE-EEEE--CCCC--CCCCCCEECCCCEEEEE
T ss_conf             6980128799998874678-------------9869999848998899-9787--8825--66888999978999986


No 43 
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli}
Probab=68.60  E-value=1.5  Score=22.11  Aligned_cols=20  Identities=30%  Similarity=0.375  Sum_probs=8.8

Q ss_pred             EEEEEECCEEEEEEECCCCC
Q ss_conf             48975315451013146555
Q gi|254780577|r  109 VNRMPIGGEVIKSVHRNGQF  128 (232)
Q Consensus       109 ~~raP~~G~V~~~~~~~G~~  128 (232)
                      ..++|++|.+.......|..
T Consensus       132 ~i~ap~~g~v~~~~~~~g~~  151 (277)
T 2f1m_A          132 KVTSPISGRIGKSNVTEGAL  151 (277)
T ss_dssp             EECCSSCEEECCCSSCBTCE
T ss_pred             EEECCCCCEEEEEECCCCCE
T ss_conf             99705341798875146977


No 44 
>3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3kzi_T* 3a0b_T* 3a0h_T*
Probab=67.40  E-value=5.2  Score=18.45  Aligned_cols=19  Identities=42%  Similarity=0.739  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHHCCCCCCC
Q ss_conf             9999999999713888762
Q gi|254780577|r   43 GAILTVWCAYFFRDPERVT   61 (232)
Q Consensus        43 ~~~~~l~~~~FFRdP~R~~   61 (232)
                      +++-+.|++-|||.|.|..
T Consensus        12 cii~lfffaiffre~p~i~   30 (32)
T 3bz1_T           12 CIIALFFFAIFFREPPRIT   30 (32)
T ss_dssp             HHHHHHHHHHHSSCCCCCS
T ss_pred             HHHHHHHHHHHHCCCCCCC
T ss_conf             9999999999843798767


No 45 
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=63.71  E-value=6.7  Score=17.70  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=22.4

Q ss_pred             EEEEEECCCCEEEEECCCEEEEEEEEEEEECCC
Q ss_conf             899996399736762298899307787971787
Q gi|254780577|r  191 RVDLFLPKDANIRVEIGQKTVAGETVIAEFNST  223 (232)
Q Consensus       191 ~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~  223 (232)
                      -..+|.-.+ ++.|++||+|++|| +||+...+
T Consensus       222 ~~t~Y~hls-~i~V~~G~~V~~G~-~IG~vG~t  252 (282)
T 2hsi_A          222 FISMFCHLS-KIDVKLGQQVPRGG-VLGKVGAT  252 (282)
T ss_dssp             EEEEEEEES-EECSCTTCEECTTC-EEEECCCT
T ss_pred             EEEEECCCC-CCCCCCCCEECCCC-EEEEECCC
T ss_conf             799963636-03538799999899-79974589


No 46 
>3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans}
Probab=63.48  E-value=4  Score=19.20  Aligned_cols=18  Identities=22%  Similarity=0.274  Sum_probs=13.6

Q ss_pred             CEEEEECCCCEEEEEECC
Q ss_conf             608863054143233115
Q gi|254780577|r   66 NLLISPADGLVSAICEMS   83 (232)
Q Consensus        66 ~~ivSPaDG~V~~i~~~~   83 (232)
                      ..+.||.||.|..+....
T Consensus       171 ~~i~AP~~G~V~~~~~~~  188 (359)
T 3lnn_A          171 LAVRSPINGRVVDLNAAT  188 (359)
T ss_dssp             EEEECSSCEEEEECCCCB
T ss_pred             EEEECCCCCCCEEEECCC
T ss_conf             999856577521420013


No 47 
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=62.68  E-value=3  Score=20.08  Aligned_cols=28  Identities=25%  Similarity=0.322  Sum_probs=22.8

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEEE
Q ss_conf             8989999639973676229889930778
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGETV  216 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi  216 (232)
                      |..+.-.+|.+-++.|++||.|++|+-+
T Consensus       201 G~~v~~~iP~Gp~l~V~~G~~v~~~qpL  228 (251)
T 1e2w_A          201 GEVVVDKIPAGPDLIVKEGQTVQADQPL  228 (251)
T ss_dssp             SCEEEEEECSSSCBCCCTTCEECTTCBC
T ss_pred             CCEEEEECCCCCEEEEECCCEEECCCCC
T ss_conf             9898783289985887089888679855


No 48 
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=60.48  E-value=3.7  Score=19.39  Aligned_cols=10  Identities=30%  Similarity=0.733  Sum_probs=4.2

Q ss_pred             EEEECCCCEE
Q ss_conf             8863054143
Q gi|254780577|r   68 LISPADGLVS   77 (232)
Q Consensus        68 ivSPaDG~V~   77 (232)
                      ..+|.||.+.
T Consensus       140 ~~a~~~~~~~  149 (369)
T 1vf7_A          140 VLSPISGRIG  149 (369)
T ss_dssp             EECSSSEEEC
T ss_pred             HCCCCHHCCC
T ss_conf             4286001032


No 49 
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=60.28  E-value=1.5  Score=22.08  Aligned_cols=12  Identities=33%  Similarity=0.612  Sum_probs=6.9

Q ss_pred             EEEECCCCEEEE
Q ss_conf             886305414323
Q gi|254780577|r   68 LISPADGLVSAI   79 (232)
Q Consensus        68 ivSPaDG~V~~i   79 (232)
                      |-||.||+|..|
T Consensus        49 v~ap~~G~l~~i   60 (229)
T 1zy8_K           49 LDASDDGILAKI   60 (229)
T ss_dssp             ------------
T ss_pred             EEEECCCEEEEE
T ss_conf             987267179887


No 50 
>3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} PDB: 3lwu_A*
Probab=58.15  E-value=8.3  Score=17.06  Aligned_cols=55  Identities=16%  Similarity=0.042  Sum_probs=38.3

Q ss_pred             EEEEECCCCCEEECCCEEEEEEE------C-CEEEEEECCC-CEEEEECCCEEEEEEEEEEEEC
Q ss_conf             03651389985703866888832------8-9899996399-7367622988993077879717
Q gi|254780577|r  166 RIVCWVKPTMKVEAGMRFGIIRF------G-SRVDLFLPKD-ANIRVEIGQKTVAGETVIAEFN  221 (232)
Q Consensus       166 rI~~~~~~g~~v~~G~r~G~irf------G-S~vdi~lP~~-~~~~V~~Gq~V~aGeTila~l~  221 (232)
                      -.....+.|+.|++||.+|.+.-      | -..++..|.+ .-+....+-.|..|+ .|+++-
T Consensus       300 l~~~~~~~G~~V~~G~~lg~i~d~~~~~~g~~~~~v~ap~dGiv~~~~~~~~V~~Gd-~l~~i~  362 (368)
T 3fmc_A          300 MVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASASVHQGT-ELYKVM  362 (368)
T ss_dssp             EEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSEECTTC-EEEEEE
T ss_pred             EEEECCCCCCEECCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCC-EEEEEE
T ss_conf             888779997997899889999778767778740899958998899805887307999-999886


No 51 
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=56.77  E-value=8.8  Score=16.91  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=11.0

Q ss_pred             EEEECCCEEEEEEEEEEEECCCCCCC
Q ss_conf             67622988993077879717877872
Q gi|254780577|r  202 IRVEIGQKTVAGETVIAEFNSTKPPL  227 (232)
Q Consensus       202 ~~V~~Gq~V~aGeTila~l~~~~~~~  227 (232)
                      +-+..|++|.-|. .+|++.+.|.++
T Consensus       114 ~i~~~G~rV~~gd-~lA~i~T~KGEV  138 (169)
T 3d4r_A          114 PIMDFGFRVLKGY-RLATLESKKGDL  138 (169)
T ss_dssp             ECCCCSEEECTTC-EEEEEECTTCCE
T ss_pred             EECCCCCEECCCC-EEEEEEECCCCE
T ss_conf             9757553761487-279998268507


No 52 
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=53.43  E-value=9.9  Score=16.56  Aligned_cols=48  Identities=15%  Similarity=0.086  Sum_probs=30.0

Q ss_pred             EEEECCCCCEEECCCEEEEEE----ECC-EEEEEECCCCE-EEEECCCEEEEEE
Q ss_conf             365138998570386688883----289-89999639973-6762298899307
Q gi|254780577|r  167 IVCWVKPTMKVEAGMRFGIIR----FGS-RVDLFLPKDAN-IRVEIGQKTVAGE  214 (232)
Q Consensus       167 I~~~~~~g~~v~~G~r~G~ir----fGS-~vdi~lP~~~~-~~V~~Gq~V~aGe  214 (232)
                      ....++.|+.|++||.+|.+.    +|. .+++..|.+-. +.....-.|..|+
T Consensus       278 ~~~~v~lG~~V~kGq~ig~I~d~d~~g~~~~~v~Ap~dGivl~~~~~~~V~~Gd  331 (354)
T 3cdx_A          278 FEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGD  331 (354)
T ss_dssp             EEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEECSSEECTTC
T ss_pred             EEECCCCCCEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC
T ss_conf             998078799948999999995678889704999879985999725888306899


No 53 
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=49.09  E-value=5.4  Score=18.32  Aligned_cols=28  Identities=14%  Similarity=0.241  Sum_probs=21.8

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEEE
Q ss_conf             8989999639973676229889930778
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGETV  216 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi  216 (232)
                      |..+.=.+|.+-++.|++||.|++|+-+
T Consensus       200 ~~~v~~~iP~Gp~liV~~G~~V~~~qpL  227 (252)
T 1hcz_A          200 ERQVIDIIPRGLELLVSEGESIKLDQPL  227 (252)
T ss_dssp             TEEEEEEECTTCCBCCCTTCEECTTCBS
T ss_pred             CCEEEEECCCCCEEEECCCCEEECCCCC
T ss_conf             9788881189986888089988679866


No 54 
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A*
Probab=44.14  E-value=6.2  Score=17.91  Aligned_cols=38  Identities=13%  Similarity=0.142  Sum_probs=24.0

Q ss_pred             EEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEEE
Q ss_conf             99997089829999851576550365138998570386688883
Q gi|254780577|r  144 SLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIR  187 (232)
Q Consensus       144 ~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~ir  187 (232)
                      .+.+++.++-..  .++-+  .+  ..+++||+|++||.+|...
T Consensus        66 ~V~I~H~~G~~t--~Y~Hl--~~--~~V~~G~~V~~Gq~IG~~g  103 (182)
T 3it5_A           66 QVRVTHPSGWAT--NYYHM--DQ--IQVSNGQQVSADTKLGVYA  103 (182)
T ss_dssp             EEEEECTTSEEE--EEESE--ES--CCCCTTCEECTTCEEEEEC
T ss_pred             EEEEEECCCCEE--EEECC--EE--CCCCCCCEEECCCEEEEEC
T ss_conf             999993898389--86424--01--2676898994772882753


No 55 
>2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099}
Probab=30.63  E-value=22  Score=14.22  Aligned_cols=44  Identities=14%  Similarity=0.214  Sum_probs=27.4

Q ss_pred             EEEECCCCCEEECCCEEEEEE----EC-CEEEEEECCCCE-------EEEECCCEE
Q ss_conf             365138998570386688883----28-989999639973-------676229889
Q gi|254780577|r  167 IVCWVKPTMKVEAGMRFGIIR----FG-SRVDLFLPKDAN-------IRVEIGQKT  210 (232)
Q Consensus       167 I~~~~~~g~~v~~G~r~G~ir----fG-S~vdi~lP~~~~-------~~V~~Gq~V  210 (232)
                      .....+.|+.|++||.+|.+.    +| ...++.-|.+-.       ..|..||.+
T Consensus       268 ~~~~~~~G~~V~kGq~lg~i~~~~~~g~~~~~i~Ap~dG~i~~~~~~~~V~~G~~l  323 (332)
T 2qj8_A          268 FEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRSAMYVQGNEEV  323 (332)
T ss_dssp             EEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEECSEEECTTCEE
T ss_pred             EEECCCCCCEECCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEE
T ss_conf             98758989998899999998177656875389993899999980378715799989


No 56 
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str}
Probab=30.38  E-value=15  Score=15.35  Aligned_cols=39  Identities=28%  Similarity=0.587  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCC---C--CCCC-CCCEEEEECCCCEEE
Q ss_conf             99999999999999713888---7--6212-766088630541432
Q gi|254780577|r   39 LLWFGAILTVWCAYFFRDPE---R--VTPI-DPNLLISPADGLVSA   78 (232)
Q Consensus        39 l~~~~~~~~l~~~~FFRdP~---R--~~~~-~~~~ivSPaDG~V~~   78 (232)
                      +.|..+. ..|++|++|-|-   |  ...+ .++.+++|.|-+|..
T Consensus       161 ~~W~~~g-~~Wl~~W~~rp~fipR~~~v~ag~~~~Lit~~Dkkvg~  205 (382)
T 1yew_A          161 AFWFAIG-VAWIGYWSRRPIFIPRLLMVDAGRADELVSATDRKVAM  205 (382)
T ss_dssp             HHHHHHH-HHHHHHHHSSCCSHHHHHHHHSSCSCTTSCTTHHHHHH
T ss_pred             HHHHHHH-HHHHHHHHHCCCCCHHHHHHHCCCHHHCCCCCCCEEEE
T ss_conf             4999999-99888887545420245655527724315855446540


No 57 
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=30.32  E-value=22  Score=14.18  Aligned_cols=87  Identities=18%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             CCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCC-CEEEEEEECCCCCCEEE--EECCCCCEEECCCEEEEEEE-CC
Q ss_conf             1545101314655565010120015706899997089-82999985157655036--51389985703866888832-89
Q gi|254780577|r  115 GGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIH-GNIGIVQIAGFVARRIV--CWVKPTMKVEAGMRFGIIRF-GS  190 (232)
Q Consensus       115 ~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~-~~i~~~qiag~~arrI~--~~~~~g~~v~~G~r~G~irf-GS  190 (232)
                      -|++....-.||....-..+..+..+ ...+..+.++ -.+.+.-.|-.....|+  -...+|+.+++|+.+|-+.- ..
T Consensus         9 ~~~~~~~~~~~~~ms~iP~dl~Ys~~-H~Wv~~e~d~~~~iGiT~~a~~~lG~I~~v~lp~~g~~v~~gd~~~~vEs~K~   87 (155)
T 3hgb_A            9 MGTLEAQTQGPGSMSDIPSDLHYTAE-HEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKS   87 (155)
T ss_dssp             ------------CCCCCCTTCEECTT-SEEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSC
T ss_pred             HEEEEECCCCCCCCCCCCCCCEECCC-CEEEEECCCCEEEEECCHHHHHHCCCEEEEEECCCCCEEECCCEEEEEEECCE
T ss_conf             00003032589860218654678899-47999769987999039999975298799981579967607976899998340


Q ss_pred             EEEEEECCCCEE
Q ss_conf             899996399736
Q gi|254780577|r  191 RVDLFLPKDANI  202 (232)
Q Consensus       191 ~vdi~lP~~~~~  202 (232)
                      ..+++-|-+.++
T Consensus        88 ~~~i~sPvsG~V   99 (155)
T 3hgb_A           88 VSDLYAPISGKV   99 (155)
T ss_dssp             EEEEECSSSEEE
T ss_pred             EECCCCCCCCEE
T ss_conf             201027836357


No 58 
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=27.76  E-value=3.2  Score=19.87  Aligned_cols=27  Identities=33%  Similarity=0.418  Sum_probs=22.2

Q ss_pred             CCEEEEEECCCCEEEEECCCEEEEEEE
Q ss_conf             898999963997367622988993077
Q gi|254780577|r  189 GSRVDLFLPKDANIRVEIGQKTVAGET  215 (232)
Q Consensus       189 GS~vdi~lP~~~~~~V~~Gq~V~aGeT  215 (232)
                      |..+.-.+|.+-++.|++||.|++|+-
T Consensus       204 G~~v~~~IP~GpeliV~~G~~v~~dqp  230 (289)
T 1vf5_C          204 GKTVVDTIPAGPELIVSEGQAVKAGEA  230 (289)
T ss_dssp             SSCCCCCCCSSSCCCCCTTCCCTTSCC
T ss_pred             CCEEEEECCCCCEEEEECCCEEECCCC
T ss_conf             989878618998588707976856985


No 59 
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} PDB: 2edg_A
Probab=27.11  E-value=25  Score=13.82  Aligned_cols=33  Identities=15%  Similarity=0.304  Sum_probs=22.8

Q ss_pred             ECCCCCEEECCCEEEEEEE-CCEEEEEECCCCEE
Q ss_conf             1389985703866888832-89899996399736
Q gi|254780577|r  170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDANI  202 (232)
Q Consensus       170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~~~  202 (232)
                      ...+|+.+++|+.+|-+.- ....+++-|-+.++
T Consensus        39 lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~V   72 (125)
T 3klr_A           39 LPEVGTKLNKQEEFGALESVKAASELYSPLSGEV   72 (125)
T ss_dssp             CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEE
T ss_pred             CCCCCCEEECCCEEEEEEECCEEEEEECCCCEEE
T ss_conf             7999989854860799997323667510344256


No 60 
>1zko_A Glycine cleavage system H protein; TM0212, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=24.06  E-value=29  Score=13.45  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=25.4

Q ss_pred             ECCCCCEEECCCEEEEEEE-CCEEEEEECCCCEE
Q ss_conf             1389985703866888832-89899996399736
Q gi|254780577|r  170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDANI  202 (232)
Q Consensus       170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~~~  202 (232)
                      ....|+++++|+.+|-+.- ....+++-|-+.++
T Consensus        52 lp~~G~~v~~g~~~~~iEs~K~~~~i~sPvsG~V   85 (136)
T 1zko_A           52 LPEVGREVKKGEVVASIESVKAAADVYAPLSGKI   85 (136)
T ss_dssp             CCCTTCEECTTCEEEEEEESSCEEEEECSSCEEE
T ss_pred             CCCCCCEEECCCEEEEEEECCCEEEEECCCCEEE
T ss_conf             7999988655976899998661577750354599


No 61 
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=22.26  E-value=22  Score=14.25  Aligned_cols=10  Identities=20%  Similarity=0.232  Sum_probs=3.6

Q ss_pred             EEECCCCCCC
Q ss_conf             1314655565
Q gi|254780577|r  121 SVHRNGQFMN  130 (232)
Q Consensus       121 ~~~~~G~~~~  130 (232)
                      +.-+||....
T Consensus        22 V~vrpG~tir   31 (86)
T 1wxm_A           22 VTVRDGMSVY   31 (86)
T ss_dssp             EECCSSCBSH
T ss_pred             EEECCCCCHH
T ss_conf             9954998999


No 62 
>1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A
Probab=22.02  E-value=32  Score=13.19  Aligned_cols=27  Identities=19%  Similarity=0.401  Sum_probs=24.0

Q ss_pred             ECCCCCCEEEEECCCCCEEECCCEEEE
Q ss_conf             515765503651389985703866888
Q gi|254780577|r  159 IAGFVARRIVCWVKPTMKVEAGMRFGI  185 (232)
Q Consensus       159 iag~~arrI~~~~~~g~~v~~G~r~G~  185 (232)
                      -||.....|.|++.+.|.++.||..=|
T Consensus        90 ~a~~Yf~KieCFCF~~Q~L~pgE~~~m  116 (164)
T 1so9_A           90 AAGAYFNKVQCFCFTETTLEPGEEMEM  116 (164)
T ss_dssp             SCSTTBTTSCCSSCSCCEECTTCEEEE
T ss_pred             HHHHHEECCCEEEEEEEEECCCCEEEE
T ss_conf             966342223376641047589987986


No 63 
>1ysl_A HMG-COA synthase; thiolase family, coenzymea, lyase; HET: CSD COA; 1.90A {Enterococcus faecalis} PDB: 1ysl_B* 1x9e_A 2hdb_A*
Probab=20.84  E-value=33  Score=13.03  Aligned_cols=19  Identities=26%  Similarity=0.623  Sum_probs=15.7

Q ss_pred             CCCCEEECCCEEEEEEECC
Q ss_conf             8998570386688883289
Q gi|254780577|r  172 KPTMKVEAGMRFGIIRFGS  190 (232)
Q Consensus       172 ~~g~~v~~G~r~G~irfGS  190 (232)
                      ..+..+++||+++++-|||
T Consensus       309 ~~~~~l~~Gd~Ill~syGs  327 (402)
T 1ysl_A          309 ENATTLTAGNQIGLFSYGS  327 (402)
T ss_dssp             HHCTTCCTTCEEEEEEEET
T ss_pred             HHCCCCCCCCEEEEEEECC
T ss_conf             8477689959999999984


No 64 
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=20.59  E-value=34  Score=13.00  Aligned_cols=33  Identities=15%  Similarity=0.302  Sum_probs=25.8

Q ss_pred             ECCCCCEEECCCEEEEEEE-CCEEEEEECCCCEE
Q ss_conf             1389985703866888832-89899996399736
Q gi|254780577|r  170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDANI  202 (232)
Q Consensus       170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~~~  202 (232)
                      ....|+.+++|+.+|.+.- ....+++-|-+.++
T Consensus        61 lp~~g~~v~~g~~~~~IEs~K~v~~i~sPvsG~V   94 (143)
T 3mxu_A           61 LPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEV   94 (143)
T ss_dssp             CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEE
T ss_pred             ECCCCCEEECCCEEEEEEECCEEEEEECCCCEEE
T ss_conf             4588767835970899984455886430354699


No 65 
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=20.39  E-value=26  Score=13.70  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=8.4

Q ss_pred             CEEEEEECCCC--EEEEECCCEE
Q ss_conf             98999963997--3676229889
Q gi|254780577|r  190 SRVDLFLPKDA--NIRVEIGQKT  210 (232)
Q Consensus       190 S~vdi~lP~~~--~~~V~~Gq~V  210 (232)
                      |++-++||.+.  .+.|+.|+++
T Consensus         2 ~~iRv~LPngq~T~V~vrpG~tl   24 (77)
T 1c1y_B            2 NTIRVFLPNKQRTVVNVRNGMSL   24 (77)
T ss_dssp             CEEEEEETTTEEEEEECCTTCBH
T ss_pred             CEEEEECCCCCEEEEEECCCCCH
T ss_conf             64999868998689995489899


No 66 
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, cytosolic assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1
Probab=20.10  E-value=34  Score=12.93  Aligned_cols=43  Identities=14%  Similarity=0.228  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCC
Q ss_conf             99999999999713888762127660886305414323311573
Q gi|254780577|r   42 FGAILTVWCAYFFRDPERVTPIDPNLLISPADGLVSAICEMSPP   85 (232)
Q Consensus        42 ~~~~~~l~~~~FFRdP~R~~~~~~~~ivSPaDG~V~~i~~~~~~   85 (232)
                      +.++..+++.-|=| |...+--.+.++++|-||+-.-.-.+-+.
T Consensus       138 ~a~~~givfak~sr-p~~ri~FS~~avI~~~dg~~~L~fRv~n~  180 (333)
T 1p7b_A          138 IALSTGLVFARFAR-PRAKIMFARHAIVRPFNGRMTLMVRAANA  180 (333)
T ss_dssp             HHHHHHHHHHHHTS-CCCCCEECSCEEEEECSSSEEEEEEEECC
T ss_pred             HHHHHHHHHHHHHC-CCCCEECCCCEEEEECCCCEEEEEEECCC
T ss_conf             99999999999718-65523102534998438956999996255


No 67 
>3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa}
Probab=20.08  E-value=34  Score=12.93  Aligned_cols=29  Identities=17%  Similarity=0.180  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHCCCCCCCC----CCCCEEEEE
Q ss_conf             99999999997138887621----276608863
Q gi|254780577|r   43 GAILTVWCAYFFRDPERVTP----IDPNLLISP   71 (232)
Q Consensus        43 ~~~~~l~~~~FFRdP~R~~~----~~~~~ivSP   71 (232)
                      ++++++++++.+.||..+.-    +.|+.-+.|
T Consensus        54 ~Fa~~m~v~~~tl~~~~P~~q~~~s~PGL~~rP   86 (290)
T 3ixz_B           54 IFALCIYVLMRTIDPYTPDYQDQLKSPGVTLRP   86 (290)
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEC
T ss_conf             999999999987688899865368899646437


Done!