Query gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 232 No_of_seqs 136 out of 1089 Neff 7.0 Searched_HMMs 23785 Date Tue May 31 20:17:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780577.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1f3z_A EIIA-GLC, glucose-speci 98.3 1.2E-05 5.2E-10 56.1 10.8 135 65-221 12-160 (161) 2 1ax3_A Iiaglc, glucose permeas 98.1 3.1E-05 1.3E-09 53.4 9.4 136 64-221 11-161 (162) 3 2gpr_A Glucose-permease IIA co 98.0 5.8E-05 2.4E-09 51.6 10.1 130 66-217 8-151 (154) 4 1z6h_A Biotin/lipoyl attachmen 95.6 0.026 1.1E-06 33.9 6.0 55 168-223 12-70 (72) 5 2auk_A DNA-directed RNA polyme 94.9 0.042 1.8E-06 32.5 5.4 35 189-224 155-189 (190) 6 1iyu_A E2P, dihydrolipoamide a 94.5 0.08 3.4E-06 30.6 6.1 57 168-225 17-77 (79) 7 2ejm_A Methylcrotonoyl-COA car 94.4 0.065 2.7E-06 31.2 5.4 58 168-226 27-88 (99) 8 2d5d_A Methylmalonyl-COA decar 94.1 0.13 5.4E-06 29.2 6.3 51 169-220 19-73 (74) 9 2kcc_A Acetyl-COA carboxylase 93.5 0.1 4.3E-06 29.9 5.0 57 169-226 19-78 (84) 10 2dn8_A Acetyl-COA carboxylase 93.4 0.22 9.1E-06 27.7 6.5 28 104-131 14-41 (100) 11 1bdo_A Acetyl-COA carboxylase; 93.3 0.11 4.7E-06 29.6 4.9 52 168-220 24-79 (80) 12 1ghj_A E2, E2, the dihydrolipo 93.3 0.14 5.8E-06 29.0 5.4 53 169-222 21-77 (79) 13 2dn8_A Acetyl-COA carboxylase 93.2 0.29 1.2E-05 26.8 6.9 56 169-225 31-89 (100) 14 1k8m_A E2 component of branche 93.0 0.078 3.3E-06 30.6 3.8 55 169-224 24-82 (93) 15 3n6r_A Propionyl-COA carboxyla 92.9 0.23 9.6E-06 27.5 6.0 58 160-220 617-680 (681) 16 3crk_C Dihydrolipoyllysine-res 92.8 0.21 9E-06 27.7 5.8 56 170-226 26-86 (87) 17 2gpr_A Glucose-permease IIA co 92.7 0.08 3.4E-06 30.6 3.4 45 64-110 43-87 (154) 18 1f3z_A EIIA-GLC, glucose-speci 92.6 0.083 3.5E-06 30.5 3.4 97 110-221 15-116 (161) 19 3hbl_A Pyruvate carboxylase; T 92.2 0.59 2.5E-05 24.8 8.1 62 161-224 1082-1149(1150) 20 1dcz_A Transcarboxylase 1.3S s 92.0 0.35 1.5E-05 26.3 6.0 51 169-220 22-76 (77) 21 1qjo_A Dihydrolipoamide acetyl 91.5 0.2 8.5E-06 27.9 4.3 54 169-223 20-77 (80) 22 3n6r_A Propionyl-COA carboxyla 91.4 0.4 1.7E-05 25.9 5.7 30 194-224 615-647 (681) 23 1gjx_A Pyruvate dehydrogenase; 90.8 0.16 6.9E-06 28.5 3.3 54 169-223 21-78 (81) 24 2dnc_A Pyruvate dehydrogenase 90.5 0.48 2E-05 25.4 5.5 56 169-225 27-87 (98) 25 2k7v_A Dihydrolipoyllysine-res 90.5 0.092 3.9E-06 30.2 1.8 54 169-223 16-73 (85) 26 2jku_A Propionyl-COA carboxyla 89.8 0.088 3.7E-06 30.3 1.3 51 169-220 39-93 (94) 27 2kcc_A Acetyl-COA carboxylase 89.7 0.54 2.3E-05 25.0 5.2 67 108-186 6-72 (84) 28 2qf7_A Pyruvate carboxylase pr 89.5 0.57 2.4E-05 24.9 5.2 55 161-217 1100-1161(1165) 29 1y8o_B Dihydrolipoyllysine-res 88.8 0.74 3.1E-05 24.1 5.4 60 165-225 42-107 (128) 30 3bg3_A Pyruvate carboxylase, m 87.4 1.4 5.9E-05 22.2 7.6 62 158-220 651-717 (718) 31 2dne_A Dihydrolipoyllysine-res 86.1 1.1 4.5E-05 23.0 5.0 53 170-223 28-85 (108) 32 2k32_A A; NMR {Campylobacter j 85.3 1.5 6.5E-05 22.0 5.4 33 191-223 67-102 (116) 33 1pmr_A Dihydrolipoyl succinylt 84.7 0.1 4.4E-06 29.8 -0.8 52 170-222 23-78 (80) 34 2gu1_A Zinc peptidase; alpha/b 84.3 2 8.4E-05 21.2 6.7 22 201-223 283-304 (361) 35 1ci3_M Protein (cytochrome F); 81.7 0.46 1.9E-05 25.5 1.5 28 189-216 200-227 (249) 36 2auk_A DNA-directed RNA polyme 81.3 0.4 1.7E-05 25.9 1.1 18 169-186 168-185 (190) 37 1q90_A Apocytochrome F; membra 81.1 0.5 2.1E-05 25.3 1.5 28 189-216 201-228 (292) 38 3csq_A Morphogenesis protein 1 80.5 1.3 5.6E-05 22.4 3.6 67 109-188 204-270 (334) 39 2jxm_B Cytochrome F; copper, e 77.8 0.6 2.5E-05 24.7 1.1 28 189-216 200-227 (249) 40 3nyy_A Putative glycyl-glycine 74.6 4 0.00017 19.2 6.6 59 109-186 141-199 (252) 41 3fpp_A Macrolide-specific effl 73.2 1.7 7.3E-05 21.6 2.5 49 63-111 151-208 (341) 42 1qwy_A Peptidoglycan hydrolase 72.9 4.4 0.00018 18.9 6.5 60 109-186 197-256 (291) 43 2f1m_A Acriflavine resistance 68.6 1.5 6.2E-05 22.1 1.3 20 109-128 132-151 (277) 44 3bz1_T PSII-T, PSII-TC, photos 67.4 5.2 0.00022 18.5 3.9 19 43-61 12-30 (32) 45 2hsi_A Putative peptidase M23; 63.7 6.7 0.00028 17.7 6.9 31 191-223 222-252 (282) 46 3lnn_A Membrane fusion protein 63.5 4 0.00017 19.2 2.7 18 66-83 171-188 (359) 47 1e2w_A Cytochrome F; electron 62.7 3 0.00012 20.1 1.9 28 189-216 201-228 (251) 48 1vf7_A Multidrug resistance pr 60.5 3.7 0.00016 19.4 2.1 10 68-77 140-149 (369) 49 1zy8_K Pyruvate dehydrogenase 60.3 1.5 6.3E-05 22.1 0.0 12 68-79 49-60 (229) 50 3fmc_A Putative succinylglutam 58.1 8.3 0.00035 17.1 6.6 55 166-221 300-362 (368) 51 3d4r_A Domain of unknown funct 56.8 8.8 0.00037 16.9 5.5 25 202-227 114-138 (169) 52 3cdx_A Succinylglutamatedesucc 53.4 9.9 0.00042 16.6 5.9 48 167-214 278-331 (354) 53 1hcz_A Cytochrome F; electron 49.1 5.4 0.00023 18.3 1.4 28 189-216 200-227 (252) 54 3it5_A Protease LASA; metallop 44.1 6.2 0.00026 17.9 1.1 38 144-187 66-103 (182) 55 2qj8_A MLR6093 protein; NP_106 30.6 22 0.00093 14.2 6.5 44 167-210 268-323 (332) 56 1yew_A Particulate methane mon 30.4 15 0.00063 15.4 1.2 39 39-78 161-205 (382) 57 3hgb_A Glycine cleavage system 30.3 22 0.00094 14.2 5.5 87 115-202 9-99 (155) 58 1vf5_C Cytochrome F; photosynt 27.8 3.2 0.00013 19.9 -2.6 27 189-215 204-230 (289) 59 3klr_A Glycine cleavage system 27.1 25 0.0011 13.8 5.0 33 170-202 39-72 (125) 60 1zko_A Glycine cleavage system 24.1 29 0.0012 13.5 5.1 33 170-202 52-85 (136) 61 1wxm_A A-RAF proto-oncogene se 22.3 22 0.00092 14.3 0.8 10 121-130 22-31 (86) 62 1so9_A Cytochrome C oxidase as 22.0 32 0.0013 13.2 2.3 27 159-185 90-116 (164) 63 1ysl_A HMG-COA synthase; thiol 20.8 33 0.0014 13.0 1.5 19 172-190 309-327 (402) 64 3mxu_A Glycine cleavage system 20.6 34 0.0014 13.0 5.0 33 170-202 61-94 (143) 65 1c1y_B Proto-onkogene serine/t 20.4 26 0.0011 13.7 0.9 21 190-210 2-24 (77) 66 1p7b_A Integral membrane chann 20.1 34 0.0014 12.9 7.1 43 42-85 138-180 (333) 67 3ixz_B Potassium-transporting 20.1 34 0.0015 12.9 5.3 29 43-71 54-86 (290) No 1 >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A Probab=98.26 E-value=1.2e-05 Score=56.15 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=92.2 Q ss_pred CCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEE Q ss_conf 66088630541432331157300000468726999960511012489753154510131465556501012001570689 Q gi|254780577|r 65 PNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQS 144 (232) Q Consensus 65 ~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~ 144 (232) .-.++||++|++..++++.|+...+-.=++.. .| -|-+ +..+||++|+|..+.-. ... T Consensus 12 ~i~v~APv~G~vi~L~~v~D~vFs~~~~G~G~--AI--~P~~-~~v~AP~dG~I~~i~~T-----------------~HA 69 (161) T 1f3z_A 12 TIEIIAPLSGEIVNIEDVPDVVFAEKIVGDGI--AI--KPTG-NKMVAPVDGTIGKIFET-----------------NHA 69 (161) T ss_dssp CEEEECSSCEEEEEGGGSSSHHHHTTSSCEEE--EE--EECS-SEEECSSSEEEEEECTT-----------------SSE T ss_pred CEEEEECCCCEEEECCCCCCHHHHCCCCCCEE--EE--ECCC-CEEEECCCEEEEEECCC-----------------CCE T ss_conf 68999636727988330988588267812629--99--8369-98990789799998689-----------------979 Q ss_pred EEEECCCCEEEEEEECCC----CCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECC--CCEEEEECCCEE Q ss_conf 999708982999985157----65503651389985703866888832--------8989999639--973676229889 Q gi|254780577|r 145 LVLKTIHGNIGIVQIAGF----VARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPK--DANIRVEIGQKT 210 (232) Q Consensus 145 ~~~~~~~~~i~~~qiag~----~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~--~~~~~V~~Gq~V 210 (232) +.+++++|.-.+++++-- ...-..+.+++||++++||.+.-+-+ --.+-+.+.+ +.+..+...+.| T Consensus 70 igi~t~~G~eiLiHiGidTv~l~G~gF~~~vk~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvv~n~~~~~~~~~~~~~v 149 (161) T 1f3z_A 70 FSIESDSGVELFVHFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSV 149 (161) T ss_dssp EEEEETTSCEEEEECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHHHHHHHCSBCCEEEEESCGGGCSEEEECCSEE T ss_pred EEEEECCCCEEEEEECCCHHHCCCCCEEEEECCCCEEECCCEEEEECHHHHHHCCCCCCEEEEEECCHHCCEEEECCCCE T ss_conf 99994899899999764577618974089976899993898989987999986199982599997656603146247858 Q ss_pred EEEEEEEEEEC Q ss_conf 93077879717 Q gi|254780577|r 211 VAGETVIAEFN 221 (232) Q Consensus 211 ~aGeTila~l~ 221 (232) ++|++.|-++. T Consensus 150 ~~g~~~l~~i~ 160 (161) T 1f3z_A 150 TVGETPVIRIK 160 (161) T ss_dssp CTTTSEEEEEE T ss_pred EECCCEEEEEE T ss_conf 62992799998 No 2 >1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A Probab=98.05 E-value=3.1e-05 Score=53.42 Aligned_cols=136 Identities=10% Similarity=0.164 Sum_probs=91.7 Q ss_pred CCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEE Q ss_conf 76608863054143233115730000046872699996051101248975315451013146555650101200157068 Q gi|254780577|r 64 DPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQ 143 (232) Q Consensus 64 ~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~ 143 (232) +++.++||++|++..++++.|+.-.+-.=++. +.|. |- -+..+||++|+|....-. +- T Consensus 11 ~~~~i~aPv~G~vi~L~~V~D~vFs~~~mG~G--~aI~--P~-~~~v~AP~~G~V~~v~~T-----------------~H 68 (162) T 1ax3_A 11 GEEVFVSPITGEIHPITDVPDQVFSGKMMGDG--FAIL--PS-EGIVVSPVRGKILNVFPT-----------------KH 68 (162) T ss_dssp CCSSCCCCCSEEEEEGGGSSSHHHHTCTTSEE--EEEE--EC-SSEEEESCCEEEEECCSS-----------------SS T ss_pred CCEEEEECCCCEEEECCCCCCHHHCCCCCCCC--EEEE--CC-CCEEECCCCEEEEEECCC-----------------CC T ss_conf 97599934886898823197746346780274--8998--27-997983789699998568-----------------96 Q ss_pred EEEEECCCCEEEEEEECC----CCCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECCC--C-EEEEECCC Q ss_conf 999970898299998515----765503651389985703866888832--------89899996399--7-36762298 Q gi|254780577|r 144 SLVLKTIHGNIGIVQIAG----FVARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPKD--A-NIRVEIGQ 208 (232) Q Consensus 144 ~~~~~~~~~~i~~~qiag----~~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~~--~-~~~V~~Gq 208 (232) .+.+++++|.-.+++++- +-..-..+++++||++++||.+.-+-+ -..+-+.+.+. + .+...... T Consensus 69 Aigi~t~~G~evLiHiGiDTV~L~G~gF~~~V~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vvvtn~~~~~~i~~~~~~ 148 (162) T 1ax3_A 69 AIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKASG 148 (162) T ss_dssp EEEEESSSSCEEEEECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHHHHGGGSSCCCEEEEESSGGGTCEEEECCCS T ss_pred EEEEECCCCCEEEEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEEECCCCCEEEEECCC T ss_conf 99999799979999986454321898318998269999899999997599998629998429999706215458882478 Q ss_pred EEEEEEEEEEEEC Q ss_conf 8993077879717 Q gi|254780577|r 209 KTVAGETVIAEFN 221 (232) Q Consensus 209 ~V~aGeTila~l~ 221 (232) .|.+|++.|..+. T Consensus 149 ~v~~g~~~i~~v~ 161 (162) T 1ax3_A 149 SVNREQEDIVKIE 161 (162) T ss_dssp EECTTCSSSEEEE T ss_pred CEEECCCEEEEEE T ss_conf 7884996589997 No 3 >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 Probab=98.01 E-value=5.8e-05 Score=51.65 Aligned_cols=130 Identities=14% Similarity=0.183 Sum_probs=85.3 Q ss_pred CEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEE Q ss_conf 60886305414323311573000004687269999605110124897531545101314655565010120015706899 Q gi|254780577|r 66 NLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSL 145 (232) Q Consensus 66 ~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~ 145 (232) -.++||++|++..++++.|+.-.+-.=+ .=+.|. |- -+..+||++|+|....-. ...+ T Consensus 8 ~~i~APv~G~vi~l~~V~D~vFs~k~mG--~G~aI~--P~-~~~v~AP~dG~V~~i~~T-----------------~HAi 65 (154) T 2gpr_A 8 LKVLAPCDGTIITLDEVEDEVFKERMLG--DGFAIN--PK-SNDFHAPVSGKLVTAFPT-----------------KHAF 65 (154) T ss_dssp EEEECSSSEEEECGGGSSCHHHHTTSSC--EEEEEE--ES-SSEEECSSCEEEEECCTT-----------------CSEE T ss_pred EEEEECCCCEEEECCCCCCHHHCCCCCC--CEEEEE--CC-CCEEECCCCCEEEEECCC-----------------CCEE T ss_conf 0999647738988132867363568801--629999--27-997992678299998689-----------------9799 Q ss_pred EEECCCCEEEEEEECCCC----CCEEEEECCCCCEEECCCEEEEEEE-------CC-EEEEEECC--CCEEEEECCCEEE Q ss_conf 997089829999851576----5503651389985703866888832-------89-89999639--9736762298899 Q gi|254780577|r 146 VLKTIHGNIGIVQIAGFV----ARRIVCWVKPTMKVEAGMRFGIIRF-------GS-RVDLFLPK--DANIRVEIGQKTV 211 (232) Q Consensus 146 ~~~~~~~~i~~~qiag~~----arrI~~~~~~g~~v~~G~r~G~irf-------GS-~vdi~lP~--~~~~~V~~Gq~V~ 211 (232) .+++++|.-.+++++--. ..--.+++++||+|++||.+.-+-+ -+ .+-+.+.+ +.++.+.....|+ T Consensus 66 gi~t~~G~eiLIHiGidTV~L~G~gF~~~v~~Gd~V~~G~~L~~~D~~~i~~~g~~~~t~vv~tn~~~~~~~~~~~g~V~ 145 (154) T 2gpr_A 66 GIQTKSGVEILLHIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLKSVAKKVPSIKSPIIFTNNGGKTLEIVKMGEVK 145 (154) T ss_dssp EEECTTSCEEEEECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHHHHHHHSSCCCEEEEEEECSSCCCSCBCCEEEC T ss_pred EEECCCCCEEEEEECCCHHHCCCCCEEEEECCCCEECCCCEEEEECHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCCC T ss_conf 99969998999997625410389736999738999959999999879999862999836999987987357773478685 Q ss_pred EEEEEE Q ss_conf 307787 Q gi|254780577|r 212 AGETVI 217 (232) Q Consensus 212 aGeTil 217 (232) +|++++ T Consensus 146 ~Gd~i~ 151 (154) T 2gpr_A 146 QGDVVA 151 (154) T ss_dssp TTCEEE T ss_pred CCCEEE T ss_conf 899999 No 4 >1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Probab=95.57 E-value=0.026 Score=33.86 Aligned_cols=55 Identities=16% Similarity=0.307 Sum_probs=42.3 Q ss_pred EEECCCCCEEECCCEEEEEEEC-CEEEEEECCCC---EEEEECCCEEEEEEEEEEEECCC Q ss_conf 6513899857038668888328-98999963997---36762298899307787971787 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRFG-SRVDLFLPKDA---NIRVEIGQKTVAGETVIAEFNST 223 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irfG-S~vdi~lP~~~---~~~V~~Gq~V~aGeTila~l~~~ 223 (232) ..++++||.+++||.+..+.-. ..+++.-|.+- +++++.||.|..|+ .|+.+.+. T Consensus 12 ~~~v~~Gd~V~~g~~l~~ie~~K~~~~v~a~~~G~v~~i~v~~G~~V~~G~-~l~~i~~~ 70 (72) T 1z6h_A 12 KVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGDFVNEGD-VLLELSNS 70 (72) T ss_dssp EECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTCEECTTC-EEEEEGGG T ss_pred EEECCCCCEECCCCEEEEEECCCCCCCEECCCCEEEEEEEECCCCEECCCC-EEEEEECC T ss_conf 999279899907989999981765530588979899999778979989999-99999479 No 5 >2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} Probab=94.91 E-value=0.042 Score=32.47 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=29.8 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEEEEEECCCC Q ss_conf 898999963997367622988993077879717877 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTK 224 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~~ 224 (232) +......||.++.+.|+.||+|.+|+ +||+++... T Consensus 155 ~~~~~Y~lP~ga~l~V~dG~~V~~Gd-vlAkiPres 189 (190) T 2auk_A 155 DMPAQYFLPGKAIVQLEDGVQISSGD-TLARIPQES 189 (190) T ss_dssp SCBCEEECCTTCEESSCTTCEECTTC-EEEEEECCC T ss_pred CCCEEEECCCCEEEEECCCCEECCCC-EEEECCCCC T ss_conf 97579977999799993979986888-999885345 No 6 >1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Probab=94.52 E-value=0.08 Score=30.58 Aligned_cols=57 Identities=19% Similarity=0.292 Sum_probs=43.5 Q ss_pred EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCCC Q ss_conf 651389985703866888832-89899996399---73676229889930778797178778 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTKP 225 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~~ 225 (232) .-++++||.+++||.+..+.- ....++.-|.+ .+++++.||.|..|+ .|+.+..+.+ T Consensus 17 ~~~v~~Gd~V~~G~~l~~iE~~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~-~l~~ie~~~~ 77 (79) T 1iyu_A 17 ELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGDKLKEGD-AIIELEPAAG 77 (79) T ss_dssp EECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTCEEETTS-EEEEEECCCS T ss_pred EEECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECCCC T ss_conf 998279799908998999995671589987989999999358969989999-9999947867 No 7 >2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Probab=94.40 E-value=0.065 Score=31.18 Aligned_cols=58 Identities=21% Similarity=0.238 Sum_probs=43.0 Q ss_pred EEECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCCCC Q ss_conf 651389985703866888832-89899996399---736762298899307787971787787 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTKPP 226 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~~~ 226 (232) ..++++||.|++||.+..+.= -..+++.-|.+ .+++|+.||.|..|+ +|+.+.+...+ T Consensus 27 ~~~v~~Gd~V~~g~~l~~vEt~K~~~~i~a~~~G~V~~i~v~~Gd~V~~G~-~L~~i~~~~~~ 88 (99) T 2ejm_A 27 KVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGAQANRHT-PLVEFEEEESD 88 (99) T ss_dssp EECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTEEECTTC-BCEEECCCCSC T ss_pred EEECCCCCEECCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCEECCCC-EEEEEECCCCC T ss_conf 998289899868998999973762379984757808799728989968999-89999638877 No 8 >2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, domain, BCCP, X-RAY diffraction, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii OT3} PDB: 2ejf_C* 2ejg_C* 2evb_A Probab=94.07 E-value=0.13 Score=29.21 Aligned_cols=51 Identities=20% Similarity=0.302 Sum_probs=36.1 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 51389985703866888832-89899996399---736762298899307787971 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) .++++||.+++||.+..+.- ...+++.-|.+ .+++++.||.|..|+ .|+.+ T Consensus 19 ~~v~~Gd~V~~g~~l~~iE~~K~~~~i~ap~~G~I~~i~v~~G~~V~~G~-~L~~I 73 (74) T 2d5d_A 19 VLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGEAVDTGQ-PLIEL 73 (74) T ss_dssp ECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTCEECTTC-EEEEE T ss_pred EECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEE T ss_conf 99489999938988999993561269987999899899948959989999-99993 No 9 >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Probab=93.55 E-value=0.1 Score=29.90 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=38.0 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCCC--EEEEECCCEEEEEEEEEEEECCCCCC Q ss_conf 51389985703866888832-898999963997--36762298899307787971787787 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA--NIRVEIGQKTVAGETVIAEFNSTKPP 226 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~--~~~V~~Gq~V~aGeTila~l~~~~~~ 226 (232) .++++|+.+++||.++.+.- -..+++.-|.+- +..++.||.|.+|+ +|+++....++ T Consensus 19 ~~V~~Gd~V~~G~~l~~iEa~K~~~~I~ap~sG~I~~~v~~Gd~V~~G~-~l~~ie~~d~e 78 (84) T 2kcc_A 19 YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGC-VVARLELDDLE 78 (84) T ss_dssp ESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECSCTTCCCCTTC-CCEEEECSCSC T ss_pred EEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCEECCCC-EEEEEECCCCC T ss_conf 9957989991798699998474478998688989999988989999999-99999458851 No 10 >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=93.40 E-value=0.22 Score=27.70 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=13.5 Q ss_pred CCCCCEEEEEECCEEEEEEECCCCCCCH Q ss_conf 1101248975315451013146555650 Q gi|254780577|r 104 IFDCHVNRMPIGGEVIKSVHRNGQFMNA 131 (232) Q Consensus 104 ~~dvH~~raP~~G~V~~~~~~~G~~~~a 131 (232) -.|-+..++|+.|+|.+..-.+|....+ T Consensus 14 ~~dp~~v~ap~~G~i~~~~V~~Gd~V~~ 41 (100) T 2dn8_A 14 ENDPTVLRSPSAGKLTQYTVEDGGHVEA 41 (100) T ss_dssp CCCTTEEECSSCEEEEEESSCTTEEECT T ss_pred CCCCCEEECCCCEEEEEEEECCCCEECC T ss_conf 8899888789986999999379899858 No 11 >1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hammerhead structure, selenomethionine, ligase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Probab=93.32 E-value=0.11 Score=29.64 Aligned_cols=52 Identities=21% Similarity=0.172 Sum_probs=39.6 Q ss_pred EEECCCCCEEECCCEEEEEEEC-CEEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 6513899857038668888328-9899996399---736762298899307787971 Q gi|254780577|r 168 VCWVKPTMKVEAGMRFGIIRFG-SRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 168 ~~~~~~g~~v~~G~r~G~irfG-S~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) ..++++||++++||.++.+.-- ...++.-|.+ .+++|+.||.|..|+ .|..+ T Consensus 24 ~~~V~~Gd~V~~g~~l~~iEamK~~~~i~a~~~G~V~~i~v~~G~~V~~G~-~L~~i 79 (80) T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDE-PLVVI 79 (80) T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTCEECTTC-EEEEE T ss_pred CCEECCCCEEECCCEEEEEEECCCHHHCCCCCCEEEEEEEECCCCEECCCC-EEEEE T ss_conf 853268999966878999997620120659999899899868979989999-99997 No 12 >1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Probab=93.28 E-value=0.14 Score=29.01 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=41.9 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC Q ss_conf 51389985703866888832-89899996399---73676229889930778797178 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~ 222 (232) -+.++||.+++||.+--+.- -..+++.-|.+ .+++++.||.|..|+ +||++.+ T Consensus 21 w~v~~Gd~V~~gd~l~~vEtdK~~~ei~ap~~G~v~~i~v~~G~~v~~G~-~l~~i~~ 77 (79) T 1ghj_A 21 WHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGDTVLSGE-LLGKLTE 77 (79) T ss_dssp CSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTCEECTTC-EEEEECC T ss_pred EECCCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEECCCC-EEEEEEC T ss_conf 99279899908998999995865899983468999999848999978999-9999947 No 13 >2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=93.18 E-value=0.29 Score=26.82 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=42.1 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC--CEEEEECCCEEEEEEEEEEEECCCCC Q ss_conf 51389985703866888832-89899996399--73676229889930778797178778 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD--ANIRVEIGQKTVAGETVIAEFNSTKP 225 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~--~~~~V~~Gq~V~aGeTila~l~~~~~ 225 (232) -.+++|+.|++||.+..+.= -..+++.-|.+ .+..++.||.|..|+ +|+.+....| T Consensus 31 ~~V~~Gd~V~~Gd~l~~iEt~K~~~~V~A~~~G~i~~~v~~G~~V~~G~-~l~~ie~dd~ 89 (100) T 2dn8_A 31 YTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIKRPGAVLEAGC-VVARLELDDP 89 (100) T ss_dssp ESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEEECSCTTCEECSSC-EEEEECCSCS T ss_pred EEECCCCEECCCCEEEEEECCCEEEEEECCCCEEEEEEECCCCEECCCC-EEEEEECCCC T ss_conf 9937989985899799998273268997788989999978989999999-9999966886 No 14 >1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Probab=93.01 E-value=0.078 Score=30.64 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=41.6 Q ss_pred EECCCCCEEECCCEEEEEEEC-CEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCC Q ss_conf 513899857038668888328-9899996399---7367622988993077879717877 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRFG-SRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTK 224 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irfG-S~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~ 224 (232) -++++|+.+++||.+.-+.-. ..+++.-|.+ .+++++.||.|..|+ .|+.+.... T Consensus 24 w~v~~Gd~V~~Gd~l~~iEt~K~~~ei~a~~~G~I~~i~v~eG~~V~~G~-~L~~Ie~e~ 82 (93) T 1k8m_A 24 WYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDDIAYVGK-PLVDIETEA 82 (93) T ss_dssp ECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSCEECTTS-EEEEEECSC T ss_pred EEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECCC T ss_conf 99089799988998999983772897883889999999538999988999-999997778 No 15 >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Probab=92.85 E-value=0.23 Score=27.52 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=42.3 Q ss_pred CCCCCCEEEEECCCCCEEECCCEEEEE---EECCEEEEEECCCC---EEEEECCCEEEEEEEEEEEE Q ss_conf 157655036513899857038668888---32898999963997---36762298899307787971 Q gi|254780577|r 160 AGFVARRIVCWVKPTMKVEAGMRFGII---RFGSRVDLFLPKDA---NIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 160 ag~~arrI~~~~~~g~~v~~G~r~G~i---rfGS~vdi~lP~~~---~~~V~~Gq~V~aGeTila~l 220 (232) |.+-..-+...+++||+|++||.+-.+ |+ -..|.-|.+- +++|++||.|.+|+ +|.+| T Consensus 617 APMPG~Vv~v~V~~Gd~V~aGq~L~VLEAMKM--E~~I~Ap~dG~V~~I~v~~Gd~V~~G~-~L~~l 680 (681) T 3n6r_A 617 CPMPGLIVKVDVEVGQEVQEGQALCTIEAMKM--ENILRAEKKGVVAKINASAGNSLAVDD-VIMEF 680 (681) T ss_dssp CCSCEEEEEECCCTTCEECTTCEEEEEECSSC--EEEEECSSSEEEEEECCCTTCEECTTC-EEEEE T ss_pred CCCCCEEEEEECCCCCEECCCCEEEEEEEEEC--CCEEECCCCEEEEEECCCCCCCCCCCC-EEEEE T ss_conf 89997599994599499889898999999703--557983899798363269889979999-99996 No 16 >3crk_C Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase isozyme 2, glucose metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Probab=92.81 E-value=0.21 Score=27.73 Aligned_cols=56 Identities=16% Similarity=0.140 Sum_probs=43.3 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCC-EEEEEEEEEEEECCCCCC Q ss_conf 1389985703866888832-89899996399---736762298-899307787971787787 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQ-KTVAGETVIAEFNSTKPP 226 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq-~V~aGeTila~l~~~~~~ 226 (232) +.++||.+++||.+--+.- -..+++.-|.+ .++.+++|| .|..|+ .||.+.+...+ T Consensus 26 ~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~eGd~~v~vG~-~ia~i~~~~ed 86 (87) T 3crk_C 26 EKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGT-PLCIIVEKEAD 86 (87) T ss_dssp CSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTC-EEEEEESSSTT T ss_pred ECCCCCEEECCCEEEEEEECCEEEEEECCCCEEEEEEEECCCCEEECCCC-EEEEEECCCCC T ss_conf 63999999789979999907788868718999999999778982975999-89999566786 No 17 >2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1 Probab=92.67 E-value=0.08 Score=30.59 Aligned_cols=45 Identities=7% Similarity=0.191 Sum_probs=19.8 Q ss_pred CCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEE Q ss_conf 76608863054143233115730000046872699996051101248 Q gi|254780577|r 64 DPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVN 110 (232) Q Consensus 64 ~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~ 110 (232) .++.++||+||+|+.+-...- ...+...+...|-|-...--|..+ T Consensus 43 ~~~~v~AP~dG~V~~i~~T~H--Aigi~t~~G~eiLIHiGidTV~L~ 87 (154) T 2gpr_A 43 KSNDFHAPVSGKLVTAFPTKH--AFGIQTKSGVEILLHIGLDTVSLD 87 (154) T ss_dssp SSSEEECSSCEEEEECCTTCS--EEEEECTTSCEEEEECSSSGGGGT T ss_pred CCCEEECCCCCEEEEECCCCC--EEEEECCCCCEEEEEECCCHHHCC T ss_conf 799799267829999868997--999996999899999762541038 No 18 >1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A Probab=92.60 E-value=0.083 Score=30.49 Aligned_cols=97 Identities=15% Similarity=0.263 Sum_probs=42.4 Q ss_pred EEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCE----EECCCEEEE Q ss_conf 8975315451013146555650101200157068999970898299998515765503651389985----703866888 Q gi|254780577|r 110 NRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMK----VEAGMRFGI 185 (232) Q Consensus 110 ~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~----v~~G~r~G~ 185 (232) ..||++|++......+-..++.-+ ..+=..+.-+ ++. +-+.+..+|..-...+.. -..|-++ + T Consensus 15 v~APv~G~vi~L~~v~D~vFs~~~-----~G~G~AI~P~--~~~-----v~AP~dG~I~~i~~T~HAigi~t~~G~ei-L 81 (161) T 1f3z_A 15 IIAPLSGEIVNIEDVPDVVFAEKI-----VGDGIAIKPT--GNK-----MVAPVDGTIGKIFETNHAFSIESDSGVEL-F 81 (161) T ss_dssp EECSSCEEEEEGGGSSSHHHHTTS-----SCEEEEEEEC--SSE-----EECSSSEEEEEECTTSSEEEEEETTSCEE-E T ss_pred EEECCCCEEEECCCCCCHHHHCCC-----CCCEEEEECC--CCE-----EEECCCEEEEEECCCCCEEEEEECCCCEE-E T ss_conf 996367279883309885882678-----1262999836--998-----99078979999868997999994899899-9 Q ss_pred EEECCEEEEEEC-CCCEEEEECCCEEEEEEEEEEEEC Q ss_conf 832898999963-997367622988993077879717 Q gi|254780577|r 186 IRFGSRVDLFLP-KDANIRVEIGQKTVAGETVIAEFN 221 (232) Q Consensus 186 irfGS~vdi~lP-~~~~~~V~~Gq~V~aGeTila~l~ 221 (232) +..|-.. +-+. +.++.+|+.||+|++|+ .|.+++ T Consensus 82 iHiGidT-v~l~G~gF~~~vk~Gd~V~~G~-~L~~~D 116 (161) T 1f3z_A 82 VHFGIDT-VELKGEGFKRIAEEGQRVKVGD-TVIEFD 116 (161) T ss_dssp EECSBSG-GGGTTTTEEECSCTTCEECTTC-EEEEEC T ss_pred EEECCCH-HHCCCCCEEEEECCCCEEECCC-EEEEEC T ss_conf 9976457-7618974089976899993898-989987 No 19 >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Probab=92.23 E-value=0.59 Score=24.79 Aligned_cols=62 Identities=16% Similarity=0.234 Sum_probs=43.0 Q ss_pred CCCCCEEE-EECCCCCEEECCCEEEEEEECC--EEEEEECCC---CEEEEECCCEEEEEEEEEEEECCCC Q ss_conf 57655036-5138998570386688883289--899996399---7367622988993077879717877 Q gi|254780577|r 161 GFVARRIV-CWVKPTMKVEAGMRFGIIRFGS--RVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNSTK 224 (232) Q Consensus 161 g~~arrI~-~~~~~g~~v~~G~r~G~irfGS--~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~ 224 (232) ..+..++. ..+++||+|++||.+-.+. -- -+.|.-|.+ .+++|+.||.|.+|+ .|..+.++. T Consensus 1082 Ap~~GnVwkv~V~~Gd~V~~Gd~l~IlE-AMKME~~V~Ap~~G~V~~I~v~~G~~V~aGq-~LvvIe~~~ 1149 (1150) T 3hbl_A 1082 AQMPGSVTEVKVSVGETVKANQPLLITE-AMKMETTIQAPFDGVIKQVTVNNGDTIATGD-LLIEIEKAT 1149 (1150) T ss_dssp CSSSEEEEEECCCTTCEECTTCEEEEEE-SSSCEEEEECSSSEEEEEECCCTTCEECTTB-EEEEEC--- T ss_pred CCCCEEEEEEEECCCCEECCCCEEEEEE-HHCCCCCCCCCCCEEEEEEEECCCCEECCCC-EEEEEEECC T ss_conf 6898478999808999979999899996-5208671538999189799818959878999-799998478 No 20 >1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Probab=91.99 E-value=0.35 Score=26.32 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=30.5 Q ss_pred EECCCCCEEECCCEEEEEEECC-EEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 5138998570386688883289-899996399---736762298899307787971 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRFGS-RVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irfGS-~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) .++++||++++||.+..+.=-- ..++.-|.+ .+++|+.||.|..|+ .|..+ T Consensus 22 ~~V~~Gd~V~~Gq~l~~iEamK~~~~v~ap~~G~I~~i~v~~G~~V~~G~-~L~~I 76 (77) T 1dcz_A 22 ILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERDAVQGGQ-GLIKI 76 (77) T ss_dssp ECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTCBCCBTS-EEEEE T ss_pred EECCCCCEECCCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEE T ss_conf 98389899869998999994351179977999799899818969979999-99994 No 21 >1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Probab=91.47 E-value=0.2 Score=27.90 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=42.0 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC Q ss_conf 51389985703866888832-89899996399---736762298899307787971787 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST 223 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~ 223 (232) -+.++||.+++||.+-.+.- -..+++.-|.+ .++.++.||.|..|+ +|+.+... T Consensus 20 ~~v~~Gd~V~~g~~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G~~v~~G~-~l~~ie~~ 77 (80) T 1qjo_A 20 VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGS-LIMIFEVE 77 (80) T ss_dssp CCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTCEECTTC-CCEEEESC T ss_pred EEECCCCEECCCCEEEEEEECCCCEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECC T ss_conf 99179799989998999990754519984652799999958989958999-99999646 No 22 >3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Probab=91.35 E-value=0.4 Score=25.92 Aligned_cols=30 Identities=27% Similarity=0.562 Sum_probs=18.1 Q ss_pred EEECCC---CEEEEECCCEEEEEEEEEEEECCCC Q ss_conf 996399---7367622988993077879717877 Q gi|254780577|r 194 LFLPKD---ANIRVEIGQKTVAGETVIAEFNSTK 224 (232) Q Consensus 194 i~lP~~---~~~~V~~Gq~V~aGeTila~l~~~~ 224 (232) |.-|.. .++.|+.||+|++|++ |+-+..=| T Consensus 615 l~APMPG~Vv~v~V~~Gd~V~aGq~-L~VLEAMK 647 (681) T 3n6r_A 615 LLCPMPGLIVKVDVEVGQEVQEGQA-LCTIEAMK 647 (681) T ss_dssp EECCSCEEEEEECCCTTCEECTTCE-EEEEECSS T ss_pred EECCCCCEEEEEECCCCCEECCCCE-EEEEEEEE T ss_conf 9789997599994599499889898-99999970 No 23 >1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Probab=90.79 E-value=0.16 Score=28.49 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=41.9 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC Q ss_conf 51389985703866888832-89899996399---736762298899307787971787 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST 223 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~ 223 (232) -++++|+.+++||.+--+.- -..+++.-|.+ .+++++.||.|..|+ .|+.+... T Consensus 21 ~~v~~Gd~V~~Gd~l~~iEt~K~~~~i~a~~~G~v~~i~v~~G~~V~~G~-~l~~ie~~ 78 (81) T 1gjx_A 21 VEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGDKISEGG-LIVVVEAE 78 (81) T ss_dssp ECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSCEECSSS-CCCEECCS T ss_pred EECCCCCEEECCCEEEEEEECCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECC T ss_conf 98289799908998999993883799980554799999828989988999-99999456 No 24 >2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=90.52 E-value=0.48 Score=25.36 Aligned_cols=56 Identities=27% Similarity=0.184 Sum_probs=41.8 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCC-EEEEEEEEEEEECCCCC Q ss_conf 51389985703866888832-89899996399---736762298-89930778797178778 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQ-KTVAGETVIAEFNSTKP 225 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq-~V~aGeTila~l~~~~~ 225 (232) -++++||.+++||.+--+.= -..+++.-|.+ .++.|+.|| .|..|+ +||.+.+... T Consensus 27 W~v~~Gd~V~~gd~l~evEtdK~~~ev~a~~~G~l~~i~v~~Gd~~v~vG~-~i~~i~~~~e 87 (98) T 2dnc_A 27 WLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGSKNIRLGS-LIGLIVEEGE 87 (98) T ss_dssp ESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTCCCEESSC-EEEEEECTTS T ss_pred EEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCC-EEEEEECCCC T ss_conf 990899999389989999858389999748998999999768982977999-8999903877 No 25 >2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Probab=90.51 E-value=0.092 Score=30.17 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=38.1 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC Q ss_conf 51389985703866888832-89899996399---736762298899307787971787 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST 223 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~ 223 (232) .++++|+.+++||.+..+.- ...+++.-|.+ .+++|+.||.|..|+ .|+++... T Consensus 16 ~~v~~Gd~V~~gd~l~~iE~~K~~~~v~a~~~G~v~~i~v~~Gd~V~~G~-~l~~ie~~ 73 (85) T 2k7v_A 16 VMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGS-LIMIFEVE 73 (85) T ss_dssp CCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTCCBCTTS-EEEEEECC T ss_pred EEECCCCEECCCCEEEEEECCCCEEEEECCCCEEEEEEEECCCCEECCCC-EEEEEECC T ss_conf 99279999917998999981883799863789899899968989979999-99999748 No 26 >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens} Probab=89.82 E-value=0.088 Score=30.31 Aligned_cols=51 Identities=20% Similarity=0.311 Sum_probs=36.6 Q ss_pred EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 51389985703866888832-89899996399---736762298899307787971 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) .++++|+.+++||.+..+.= -...++.-|.+ .++.|+.||.|..|+ .|+.+ T Consensus 39 i~V~~Gd~V~~G~~l~~iEsmK~~~~v~Ap~~G~V~~i~v~~Gd~V~~G~-~L~~I 93 (94) T 2jku_A 39 VSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGDTVGEGD-LLVEL 93 (94) T ss_dssp ECCCTTCCCCTTCCCEEEEC------------------------------------ T ss_pred EECCCCCEECCCCEEEEEECCCCCEEEEECCCEEEEEEEECCCCEECCCC-EEEEE T ss_conf 98189999958987999980365389993889999899868979979999-99997 No 27 >2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Probab=89.67 E-value=0.54 Score=25.04 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=31.9 Q ss_pred CEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEE Q ss_conf 2489753154510131465556501012001570689999708982999985157655036513899857038668888 Q gi|254780577|r 108 HVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGII 186 (232) Q Consensus 108 H~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~i 186 (232) ...+||+.|++.+..-.+|....+... ...+++.+..+.+ .......|....++|+.+..|+.+..+ T Consensus 6 ~~v~ap~~G~i~~~~V~~Gd~V~~G~~---------l~~iEa~K~~~~I---~ap~sG~I~~~v~~Gd~V~~G~~l~~i 72 (84) T 2kcc_A 6 TVLRSPSAGKLTQYTVEDGGHVEAGSS---------YAEMEVMKMIMTL---NVQERGRVKYIKRPGAVLEAGCVVARL 72 (84) T ss_dssp TEECCSSSCCEEEESSCTTEEECTTCE---------EEEEECSSCEEEE---ECSSSEEEEECSCTTCCCCTTCCCEEE T ss_pred CEEECCCCEEEEEEEECCCCEECCCCE---------EEEEECCCEEEEE---ECCCCEEEEEEECCCCEECCCCEEEEE T ss_conf 879889885999999579899917986---------9999847447899---868898999998898999999999999 No 28 >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA SAP; 2.00A {Rhizobium etli cfn 42} Probab=89.46 E-value=0.57 Score=24.90 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=38.5 Q ss_pred CCCCCEEE-EECCCCCEEECCCEEEEE---EECCEEEEEECCC---CEEEEECCCEEEEEEEEE Q ss_conf 57655036-513899857038668888---3289899996399---736762298899307787 Q gi|254780577|r 161 GFVARRIV-CWVKPTMKVEAGMRFGII---RFGSRVDLFLPKD---ANIRVEIGQKTVAGETVI 217 (232) Q Consensus 161 g~~arrI~-~~~~~g~~v~~G~r~G~i---rfGS~vdi~lP~~---~~~~V~~Gq~V~aGeTil 217 (232) ..+..++. ..+++||+|++||..-.+ |+ -..|.-|.+ .+++|+.||.|.+|++++ T Consensus 1100 AP~~GnVWKV~Vk~GD~VkaGq~L~ILEAMKM--Ei~V~AP~aG~V~~I~v~~Gd~V~aGq~Lv 1161 (1165) T 2qf7_A 1100 APMPGVISRVFVSSGQAVNAGDVLVSIEAMKM--ETAIHAEKDGTIAEVLVKAGDQIDAKDLLA 1161 (1165) T ss_dssp CSSCEEEEEECCSSCCCC---CEEEEEEC-----CEEEECCSSCCCCEECCCSSCEECTTBEEE T ss_pred CCCCEEEEEEEECCCCEECCCCEEEEEEHHHC--CCCCCCCCCEEEEEEEECCCCEECCCCEEE T ss_conf 89996899999799999799998999966308--672328998399799837959978999899 No 29 >1y8o_B Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: LPA ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Probab=88.76 E-value=0.74 Score=24.12 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=43.2 Q ss_pred CEEEE-ECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCC-EEEEEEEEEEEECCCCC Q ss_conf 50365-1389985703866888832-898999963997---36762298-89930778797178778 Q gi|254780577|r 165 RRIVC-WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQ-KTVAGETVIAEFNSTKP 225 (232) Q Consensus 165 rrI~~-~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq-~V~aGeTila~l~~~~~ 225 (232) ..|+- ..++||.|++||.+.-+.- -..+++.-|.+- ++.|+.|+ .|.-|+ +||.+.+... T Consensus 42 g~I~~W~vk~GD~V~~gd~L~evETDKa~~EI~A~~~G~l~~i~v~eGd~~v~vG~-~Ia~I~~~~~ 107 (128) T 1y8o_B 42 GTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDVPLGT-PLCIIVEKEA 107 (128) T ss_dssp EEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSEETTC-EEEEEESSGG T ss_pred EEEEEEEECCCCEEECCCEEEEEECCCEEEEEECCCCEEEEEEEECCCCEEECCCC-EEEEEECCCC T ss_conf 99989995799998089979999828657988426787999999667983881899-8999934776 No 30 >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Probab=87.42 E-value=1.4 Score=22.24 Aligned_cols=62 Identities=16% Similarity=0.209 Sum_probs=45.2 Q ss_pred EECCCCCCEEE-EECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEE Q ss_conf 85157655036-51389985703866888832-89899996399---736762298899307787971 Q gi|254780577|r 158 QIAGFVARRIV-CWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEF 220 (232) Q Consensus 158 qiag~~arrI~-~~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l 220 (232) ++++.+...++ ..+++||+|++||.+-.+.- -=-..|.-|.+ .++.|+.||.|.+|+ +|..+ T Consensus 651 ~V~APmpG~V~~v~V~~Gd~V~~G~~l~vlEAMKMEt~I~Ap~~G~V~~I~V~~gd~V~~gd-lL~~i 717 (718) T 3bg3_A 651 QIGAPMPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDMTLEGDD-LILEI 717 (718) T ss_dssp CEECSSCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEEEECSSC-EEECB T ss_pred EECCCCCCEEEEEEECCCCEECCCCEEEEEEHHCCCCEECCCCCCEEEEEEECCCCEECCCC-EEEEE T ss_conf 43389994379999699998799999999974108650338999189899978989888998-89996 No 31 >2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Probab=86.14 E-value=1.1 Score=23.01 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=39.0 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCCC---EEEEECCCE-EEEEEEEEEEECCC Q ss_conf 1389985703866888832-898999963997---367622988-99307787971787 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA---NIRVEIGQK-TVAGETVIAEFNST 223 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~---~~~V~~Gq~-V~aGeTila~l~~~ 223 (232) ++++||.|++||.+--+.- -..+++.-|.+- ++.++.||. |..|+ +||.+.+. T Consensus 28 ~v~~Gd~V~~gd~l~evETdKa~~ev~a~~~G~l~~ilv~eGd~~v~vG~-~ia~i~~~ 85 (108) T 2dne_A 28 EKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGA-IICITVGK 85 (108) T ss_dssp SSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTC-EEEEEESC T ss_pred EECCCCEEECCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCCEECCCC-EEEEEECC T ss_conf 93699998079989999838576898607896999999667984876999-89999248 No 32 >2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Probab=85.32 E-value=1.5 Score=21.99 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=22.0 Q ss_pred EEEEEECCC---CEEEEECCCEEEEEEEEEEEECCC Q ss_conf 899996399---736762298899307787971787 Q gi|254780577|r 191 RVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNST 223 (232) Q Consensus 191 ~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~~ 223 (232) ...+.-|-+ .+..++.||.|.+|+|.|+.+... T Consensus 67 ~~~I~AP~~G~V~~~~~~~G~~V~~g~~~l~~I~~~ 102 (116) T 2k32_A 67 HTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNL 102 (116) T ss_dssp EEEEECSSSEEECCCSCCTTCEECTTTSCCEEEECS T ss_pred CCEEECCCCEEEEEEECCCCCEECCCCCEEEEEECC T ss_conf 789988988799989879999888999548999779 No 33 >1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Probab=84.67 E-value=0.1 Score=29.82 Aligned_cols=52 Identities=12% Similarity=0.112 Sum_probs=39.1 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCC---CEEEEECCCEEEEEEEEEEEECC Q ss_conf 1389985703866888832-89899996399---73676229889930778797178 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKD---ANIRVEIGQKTVAGETVIAEFNS 222 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~---~~~~V~~Gq~V~aGeTila~l~~ 222 (232) +.++|+.+++||.+--+.- -..+++.-|.+ .++++++||.|..|+ +||++.+ T Consensus 23 ~v~~Gd~V~~gd~l~eiEtdK~~~ei~a~~~G~l~~i~v~~G~~v~vG~-~l~~i~e 78 (80) T 1pmr_A 23 HKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQ-ILGRLRE 78 (80) T ss_dssp CCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTCEECSSS-EEEBCCC T ss_pred EECCCCEECCCCEEEEEECCCEEEEEEECCCEEEEEEEECCCCEECCCC-EEEEEEC T ss_conf 9079899879998999993865899870368999999868999987999-9999979 No 34 >2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae} Probab=84.31 E-value=2 Score=21.24 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=14.0 Q ss_pred EEEEECCCEEEEEEEEEEEECCC Q ss_conf 36762298899307787971787 Q gi|254780577|r 201 NIRVEIGQKTVAGETVIAEFNST 223 (232) Q Consensus 201 ~~~V~~Gq~V~aGeTila~l~~~ 223 (232) ++.|+.||+|+.|| +||+..++ T Consensus 283 ~~~V~~G~~V~~Gq-~Ig~vG~T 304 (361) T 2gu1_A 283 KILVKKGQLVKRGQ-KIALAGAT 304 (361) T ss_dssp EECCCTTCEECTTC-EEEECCCC T ss_pred CCCCCCCCEECCCC-EEEEECCC T ss_conf 11338899999799-99987688 No 35 >1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transport; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B* Probab=81.70 E-value=0.46 Score=25.51 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=24.4 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEE Q ss_conf 8989999639973676229889930778 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETV 216 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi 216 (232) |..+.-.+|.+-++.|++||+|++|+.+ T Consensus 200 Ge~v~y~IP~G~~L~V~eGd~VkaGq~L 227 (249) T 1ci3_M 200 GTTIVDKIPAGPELIVSEGEEVAAGAAL 227 (249) T ss_dssp SCEEEEEECSSSCBCCCTTCEECTTCBS T ss_pred CCEEEEECCCCCEEEECCCCEEECCCCC T ss_conf 9799997699981577789998089842 No 36 >2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli} Probab=81.25 E-value=0.4 Score=25.90 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=11.4 Q ss_pred EECCCCCEEECCCEEEEE Q ss_conf 513899857038668888 Q gi|254780577|r 169 CWVKPTMKVEAGMRFGII 186 (232) Q Consensus 169 ~~~~~g~~v~~G~r~G~i 186 (232) ..++.|+.++.||-+.-+ T Consensus 168 l~V~dG~~V~~GdvlAki 185 (190) T 2auk_A 168 VQLEDGVQISSGDTLARI 185 (190) T ss_dssp ESSCTTCEECTTCEEEEE T ss_pred EEECCCCEECCCCEEEEC T ss_conf 999397998688899988 No 37 >1q90_A Apocytochrome F; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 Probab=81.08 E-value=0.5 Score=25.27 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.1 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEE Q ss_conf 8989999639973676229889930778 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETV 216 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi 216 (232) |..++-.+|.+-++.|++||.|++|+.+ T Consensus 201 Ge~v~~~IP~G~~LiV~eGd~VkaGq~L 228 (292) T 1q90_A 201 GEVVVDKIPAGPDLIVKEGQTVQADQPL 228 (292) T ss_dssp SCEEEEEECSSSCBCCCTTCEECTTCBS T ss_pred CCEEEEECCCCCEEEECCCCEEECCCCC T ss_conf 9889997489997896689998089803 No 38 >3csq_A Morphogenesis protein 1; hydrolase, infection, late protein; 1.80A {Bacteriophage phi-29} Probab=80.50 E-value=1.3 Score=22.38 Aligned_cols=67 Identities=7% Similarity=0.014 Sum_probs=36.5 Q ss_pred EEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEEEE Q ss_conf 48975315451013146555650101200157068999970898299998515765503651389985703866888832 Q gi|254780577|r 109 VNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIRF 188 (232) Q Consensus 109 ~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~irf 188 (232) -.+||.+|+|....+..+-. +.-..+.+...++......+.-+...++ .+++||.|++||.||..-- T Consensus 204 pv~A~~~G~V~~~~~~~~~~-----------~~~~~~~i~~~~g~~~~~~y~~~~~~~~--~v~~G~~V~~G~~ig~~G~ 270 (334) T 3csq_A 204 PYYAPCDCTCVWRGDASAYL-----------AWTSDKEVMCADGSVRYITWVNVHESPL--PFDVGKKLKKGDLMGHTGI 270 (334) T ss_dssp EEECSSSEEEEEEETTTTEE-----------EEEESSCEECTTSCEECEEEEEECCSSC--CCCTTCEECTTSEEEECBC T ss_pred CEEECCCEEEEEEEECCCCC-----------CCCCEEEEEECCCCEEEEEEEEECCCCC--CCCCCCEECCCCEEEEECC T ss_conf 58978998999997268755-----------3178699997899805999997344645--6888989768977997578 No 39 >2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1 Probab=77.85 E-value=0.6 Score=24.74 Aligned_cols=28 Identities=21% Similarity=0.334 Sum_probs=23.8 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEE Q ss_conf 8989999639973676229889930778 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETV 216 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi 216 (232) |..++-.+|.+.++.|++||+|++|+.+ T Consensus 200 Ge~v~y~IP~G~~L~V~eGD~V~aGq~L 227 (249) T 2jxm_B 200 GDAVVTSILPGPELIVAVGDTVEAGQLL 227 (249) T ss_dssp SCCEEEEECSSSCBCCCTTCEECTTCBS T ss_pred CCEEEEECCCCCEEEECCCCEECCCCCC T ss_conf 9889997489981477899998589842 No 40 >3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus} Probab=74.64 E-value=4 Score=19.21 Aligned_cols=59 Identities=14% Similarity=0.006 Sum_probs=38.3 Q ss_pred EEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEE Q ss_conf 489753154510131465556501012001570689999708982999985157655036513899857038668888 Q gi|254780577|r 109 VNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGII 186 (232) Q Consensus 109 ~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~i 186 (232) -.+|+.+|+|....+..+- -..+.+++.++.... ++-+ .++ ..+++|+.|++||.+|.+ T Consensus 141 PV~A~~dG~V~~~g~~~~~--------------G~~V~I~h~~g~~t~--Y~HL--~~~-~~V~~G~~V~~Gq~IG~v 199 (252) T 3nyy_A 141 PVVSMTDGVVTEKGWLEKG--------------GWRIGITAPTGAYFY--YAHL--DSY-AELEKGDPVKAGDLLGYM 199 (252) T ss_dssp EEECSSCEEEEEEEEETTT--------------EEEEEEECTTSCEEE--EEEE--SEE-CSCCTTCEECTTCEEEEC T ss_pred EEEEEECEEEEEEEECCCC--------------CEEEEEEECCCCEEE--EEEC--CCC-CCCCCCCEECCCCEEEEE T ss_conf 4899656799985574999--------------809999968988898--5135--655-556889999868999982 No 41 >3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Probab=73.24 E-value=1.7 Score=21.64 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=25.4 Q ss_pred CCCCEEEEECCCCEEEEEECCCCCH---------HHCCCCCEEEEEEEECCCCCCEEE Q ss_conf 2766088630541432331157300---------000468726999960511012489 Q gi|254780577|r 63 IDPNLLISPADGLVSAICEMSPPPE---------LELENEVMLRLSIFMNIFDCHVNR 111 (232) Q Consensus 63 ~~~~~ivSPaDG~V~~i~~~~~~~~---------~~~~~~~~~~I~Ifls~~dvH~~r 111 (232) .+...+.||.||.+..+........ ..........+....+..+....+ T Consensus 151 ~~~~~i~a~~~~~~~~~~~~~G~~v~~~~~~~~~~~i~~~~~~~~~~~v~e~~~~~v~ 208 (341) T 3fpp_A 151 LDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSAMLVKAQVSEADVIHLK 208 (341) T ss_dssp TTSSEEECSSSEEEEEESSCTTCEECCTTSCCCCEEEECCSEEEEEEECCGGGSTTCC T ss_pred CCCEEEECCCCCEEEEEEECCCCEEECCCCCCEEEEEECCCCEEEEEEECHHHHHHHH T ss_conf 3550684686762778982579888337876147899238853799865899999731 No 42 >1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A Probab=72.93 E-value=4.4 Score=18.94 Aligned_cols=60 Identities=18% Similarity=0.087 Sum_probs=31.6 Q ss_pred EEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEE Q ss_conf 489753154510131465556501012001570689999708982999985157655036513899857038668888 Q gi|254780577|r 109 VNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGII 186 (232) Q Consensus 109 ~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~i 186 (232) -.+|+.+|+|....+.... --..+.++..++.... .++- ..++ .+++||.|++||.||.+ T Consensus 197 pV~A~~dG~Vv~~g~~~~g-------------~G~~ViI~h~~g~~~t-~Y~H--L~~i--~Vk~Gq~V~~Gq~IG~v 256 (291) T 1qwy_A 197 PVYSLTDGTVVQAGWSNYG-------------GGNQVTIKEANSNNYQ-WYMH--NNRL--TVSAGDKVKAGDQIAYS 256 (291) T ss_dssp EEECSSSEEEEEEEEETTT-------------TEEEEEEEETTSSEEE-EEEE--ESEE--CCCTTCEECTTCEEEEC T ss_pred EEEECCCEEEEEEEECCCC-------------CCEEEEEEECCCCEEE-EEEE--CCCC--CCCCCCEECCCCEEEEE T ss_conf 6980128799998874678-------------9869999848998899-9787--8825--66888999978999986 No 43 >2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport protein; 2.71A {Escherichia coli} Probab=68.60 E-value=1.5 Score=22.11 Aligned_cols=20 Identities=30% Similarity=0.375 Sum_probs=8.8 Q ss_pred EEEEEECCEEEEEEECCCCC Q ss_conf 48975315451013146555 Q gi|254780577|r 109 VNRMPIGGEVIKSVHRNGQF 128 (232) Q Consensus 109 ~~raP~~G~V~~~~~~~G~~ 128 (232) ..++|++|.+.......|.. T Consensus 132 ~i~ap~~g~v~~~~~~~g~~ 151 (277) T 2f1m_A 132 KVTSPISGRIGKSNVTEGAL 151 (277) T ss_dssp EECCSSCEEECCCSSCBTCE T ss_pred EEECCCCCEEEEEECCCCCE T ss_conf 99705341798875146977 No 44 >3bz1_T PSII-T, PSII-TC, photosystem II reaction center protein T; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_T* 2axt_T* 3bz2_T* 3kzi_T* 3a0b_T* 3a0h_T* Probab=67.40 E-value=5.2 Score=18.45 Aligned_cols=19 Identities=42% Similarity=0.739 Sum_probs=12.5 Q ss_pred HHHHHHHHHHHHCCCCCCC Q ss_conf 9999999999713888762 Q gi|254780577|r 43 GAILTVWCAYFFRDPERVT 61 (232) Q Consensus 43 ~~~~~l~~~~FFRdP~R~~ 61 (232) +++-+.|++-|||.|.|.. T Consensus 12 cii~lfffaiffre~p~i~ 30 (32) T 3bz1_T 12 CIIALFFFAIFFREPPRIT 30 (32) T ss_dssp HHHHHHHHHHHSSCCCCCS T ss_pred HHHHHHHHHHHHCCCCCCC T ss_conf 9999999999843798767 No 45 >2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1} Probab=63.71 E-value=6.7 Score=17.70 Aligned_cols=31 Identities=26% Similarity=0.475 Sum_probs=22.4 Q ss_pred EEEEEECCCCEEEEECCCEEEEEEEEEEEECCC Q ss_conf 899996399736762298899307787971787 Q gi|254780577|r 191 RVDLFLPKDANIRVEIGQKTVAGETVIAEFNST 223 (232) Q Consensus 191 ~vdi~lP~~~~~~V~~Gq~V~aGeTila~l~~~ 223 (232) -..+|.-.+ ++.|++||+|++|| +||+...+ T Consensus 222 ~~t~Y~hls-~i~V~~G~~V~~G~-~IG~vG~t 252 (282) T 2hsi_A 222 FISMFCHLS-KIDVKLGQQVPRGG-VLGKVGAT 252 (282) T ss_dssp EEEEEEEES-EECSCTTCEECTTC-EEEECCCT T ss_pred EEEEECCCC-CCCCCCCCEECCCC-EEEEECCC T ss_conf 799963636-03538799999899-79974589 No 46 >3lnn_A Membrane fusion protein (MFP-RND) heavy metal CAT tricomponent efflux HMXB (CZCB-LIKE)...; structural genomics, PSI-2; 2.80A {Cupriavidus metallidurans} Probab=63.48 E-value=4 Score=19.20 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=13.6 Q ss_pred CEEEEECCCCEEEEEECC Q ss_conf 608863054143233115 Q gi|254780577|r 66 NLLISPADGLVSAICEMS 83 (232) Q Consensus 66 ~~ivSPaDG~V~~i~~~~ 83 (232) ..+.||.||.|..+.... T Consensus 171 ~~i~AP~~G~V~~~~~~~ 188 (359) T 3lnn_A 171 LAVRSPINGRVVDLNAAT 188 (359) T ss_dssp EEEECSSCEEEEECCCCB T ss_pred EEEECCCCCCCEEEECCC T ss_conf 999856577521420013 No 47 >1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A* Probab=62.68 E-value=3 Score=20.08 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=22.8 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEE Q ss_conf 8989999639973676229889930778 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETV 216 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi 216 (232) |..+.-.+|.+-++.|++||.|++|+-+ T Consensus 201 G~~v~~~iP~Gp~l~V~~G~~v~~~qpL 228 (251) T 1e2w_A 201 GEVVVDKIPAGPDLIVKEGQTVQADQPL 228 (251) T ss_dssp SCEEEEEECSSSCBCCCTTCEECTTCBC T ss_pred CCEEEEECCCCCEEEEECCCEEECCCCC T ss_conf 9898783289985887089888679855 No 48 >1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A Probab=60.48 E-value=3.7 Score=19.39 Aligned_cols=10 Identities=30% Similarity=0.733 Sum_probs=4.2 Q ss_pred EEEECCCCEE Q ss_conf 8863054143 Q gi|254780577|r 68 LISPADGLVS 77 (232) Q Consensus 68 ivSPaDG~V~ 77 (232) ..+|.||.+. T Consensus 140 ~~a~~~~~~~ 149 (369) T 1vf7_A 140 VLSPISGRIG 149 (369) T ss_dssp EECSSSEEEC T ss_pred HCCCCHHCCC T ss_conf 4286001032 No 49 >1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens} Probab=60.28 E-value=1.5 Score=22.08 Aligned_cols=12 Identities=33% Similarity=0.612 Sum_probs=6.9 Q ss_pred EEEECCCCEEEE Q ss_conf 886305414323 Q gi|254780577|r 68 LISPADGLVSAI 79 (232) Q Consensus 68 ivSPaDG~V~~i 79 (232) |-||.||+|..| T Consensus 49 v~ap~~G~l~~i 60 (229) T 1zy8_K 49 LDASDDGILAKI 60 (229) T ss_dssp ------------ T ss_pred EEEECCCEEEEE T ss_conf 987267179887 No 50 >3fmc_A Putative succinylglutamate desuccinylase / aspartoacylase; YP_926482.1, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Shewanella amazonensis SB2B} PDB: 3lwu_A* Probab=58.15 E-value=8.3 Score=17.06 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=38.3 Q ss_pred EEEEECCCCCEEECCCEEEEEEE------C-CEEEEEECCC-CEEEEECCCEEEEEEEEEEEEC Q ss_conf 03651389985703866888832------8-9899996399-7367622988993077879717 Q gi|254780577|r 166 RIVCWVKPTMKVEAGMRFGIIRF------G-SRVDLFLPKD-ANIRVEIGQKTVAGETVIAEFN 221 (232) Q Consensus 166 rI~~~~~~g~~v~~G~r~G~irf------G-S~vdi~lP~~-~~~~V~~Gq~V~aGeTila~l~ 221 (232) -.....+.|+.|++||.+|.+.- | -..++..|.+ .-+....+-.|..|+ .|+++- T Consensus 300 l~~~~~~~G~~V~~G~~lg~i~d~~~~~~g~~~~~v~ap~dGiv~~~~~~~~V~~Gd-~l~~i~ 362 (368) T 3fmc_A 300 MVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILHFASASVHQGT-ELYKVM 362 (368) T ss_dssp EEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEECSSSEECTTC-EEEEEE T ss_pred EEEECCCCCCEECCCCEEEEEECCCCCCCCCCEEEEEECCCCEEEECCCCCCCCCCC-EEEEEE T ss_conf 888779997997899889999778767778740899958998899805887307999-999886 No 51 >3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis} Probab=56.77 E-value=8.8 Score=16.91 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=11.0 Q ss_pred EEEECCCEEEEEEEEEEEECCCCCCC Q ss_conf 67622988993077879717877872 Q gi|254780577|r 202 IRVEIGQKTVAGETVIAEFNSTKPPL 227 (232) Q Consensus 202 ~~V~~Gq~V~aGeTila~l~~~~~~~ 227 (232) +-+..|++|.-|. .+|++.+.|.++ T Consensus 114 ~i~~~G~rV~~gd-~lA~i~T~KGEV 138 (169) T 3d4r_A 114 PIMDFGFRVLKGY-RLATLESKKGDL 138 (169) T ss_dssp ECCCCSEEECTTC-EEEEEECTTCCE T ss_pred EECCCCCEECCCC-EEEEEEECCCCE T ss_conf 9757553761487-279998268507 No 52 >3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} Probab=53.43 E-value=9.9 Score=16.56 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=30.0 Q ss_pred EEEECCCCCEEECCCEEEEEE----ECC-EEEEEECCCCE-EEEECCCEEEEEE Q ss_conf 365138998570386688883----289-89999639973-6762298899307 Q gi|254780577|r 167 IVCWVKPTMKVEAGMRFGIIR----FGS-RVDLFLPKDAN-IRVEIGQKTVAGE 214 (232) Q Consensus 167 I~~~~~~g~~v~~G~r~G~ir----fGS-~vdi~lP~~~~-~~V~~Gq~V~aGe 214 (232) ....++.|+.|++||.+|.+. +|. .+++..|.+-. +.....-.|..|+ T Consensus 278 ~~~~v~lG~~V~kGq~ig~I~d~d~~g~~~~~v~Ap~dGivl~~~~~~~V~~Gd 331 (354) T 3cdx_A 278 FEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFGAGPGRVTRGD 331 (354) T ss_dssp EEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEEECSSEECTTC T ss_pred EEECCCCCCEECCCCEEEEEECCCCCCCCEEEEECCCCEEEEECCCCCCCCCCC T ss_conf 998078799948999999995678889704999879985999725888306899 No 53 >1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B* Probab=49.09 E-value=5.4 Score=18.32 Aligned_cols=28 Identities=14% Similarity=0.241 Sum_probs=21.8 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEEE Q ss_conf 8989999639973676229889930778 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGETV 216 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeTi 216 (232) |..+.=.+|.+-++.|++||.|++|+-+ T Consensus 200 ~~~v~~~iP~Gp~liV~~G~~V~~~qpL 227 (252) T 1hcz_A 200 ERQVIDIIPRGLELLVSEGESIKLDQPL 227 (252) T ss_dssp TEEEEEEECTTCCBCCCTTCEECTTCBS T ss_pred CCEEEEECCCCCEEEECCCCEEECCCCC T ss_conf 9788881189986888089988679866 No 54 >3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell outer membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 3it7_A* Probab=44.14 E-value=6.2 Score=17.91 Aligned_cols=38 Identities=13% Similarity=0.142 Sum_probs=24.0 Q ss_pred EEEEECCCCEEEEEEECCCCCCEEEEECCCCCEEECCCEEEEEE Q ss_conf 99997089829999851576550365138998570386688883 Q gi|254780577|r 144 SLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIR 187 (232) Q Consensus 144 ~~~~~~~~~~i~~~qiag~~arrI~~~~~~g~~v~~G~r~G~ir 187 (232) .+.+++.++-.. .++-+ .+ ..+++||+|++||.+|... T Consensus 66 ~V~I~H~~G~~t--~Y~Hl--~~--~~V~~G~~V~~Gq~IG~~g 103 (182) T 3it5_A 66 QVRVTHPSGWAT--NYYHM--DQ--IQVSNGQQVSADTKLGVYA 103 (182) T ss_dssp EEEEECTTSEEE--EEESE--ES--CCCCTTCEECTTCEEEEEC T ss_pred EEEEEECCCCEE--EEECC--EE--CCCCCCCEEECCCEEEEEC T ss_conf 999993898389--86424--01--2676898994772882753 No 55 >2qj8_A MLR6093 protein; NP_106651.1, uncharacterized protein MLR6093, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.00A {Mesorhizobium loti MAFF303099} Probab=30.63 E-value=22 Score=14.22 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=27.4 Q ss_pred EEEECCCCCEEECCCEEEEEE----EC-CEEEEEECCCCE-------EEEECCCEE Q ss_conf 365138998570386688883----28-989999639973-------676229889 Q gi|254780577|r 167 IVCWVKPTMKVEAGMRFGIIR----FG-SRVDLFLPKDAN-------IRVEIGQKT 210 (232) Q Consensus 167 I~~~~~~g~~v~~G~r~G~ir----fG-S~vdi~lP~~~~-------~~V~~Gq~V 210 (232) .....+.|+.|++||.+|.+. +| ...++.-|.+-. ..|..||.+ T Consensus 268 ~~~~~~~G~~V~kGq~lg~i~~~~~~g~~~~~i~Ap~dG~i~~~~~~~~V~~G~~l 323 (332) T 2qj8_A 268 FEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIRSAMYVQGNEEV 323 (332) T ss_dssp EEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEECSEEECTTCEE T ss_pred EEECCCCCCEECCCCEEEEEECCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEE T ss_conf 98758989998899999998177656875389993899999980378715799989 No 56 >1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} Probab=30.38 E-value=15 Score=15.35 Aligned_cols=39 Identities=28% Similarity=0.587 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHHHCCCC---C--CCCC-CCCEEEEECCCCEEE Q ss_conf 99999999999999713888---7--6212-766088630541432 Q gi|254780577|r 39 LLWFGAILTVWCAYFFRDPE---R--VTPI-DPNLLISPADGLVSA 78 (232) Q Consensus 39 l~~~~~~~~l~~~~FFRdP~---R--~~~~-~~~~ivSPaDG~V~~ 78 (232) +.|..+. ..|++|++|-|- | ...+ .++.+++|.|-+|.. T Consensus 161 ~~W~~~g-~~Wl~~W~~rp~fipR~~~v~ag~~~~Lit~~Dkkvg~ 205 (382) T 1yew_A 161 AFWFAIG-VAWIGYWSRRPIFIPRLLMVDAGRADELVSATDRKVAM 205 (382) T ss_dssp HHHHHHH-HHHHHHHHSSCCSHHHHHHHHSSCSCTTSCTTHHHHHH T ss_pred HHHHHHH-HHHHHHHHHCCCCCHHHHHHHCCCHHHCCCCCCCEEEE T ss_conf 4999999-99888887545420245655527724315855446540 No 57 >3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Probab=30.32 E-value=22 Score=14.18 Aligned_cols=87 Identities=18% Similarity=0.181 Sum_probs=48.7 Q ss_pred CCEEEEEEECCCCCCCHHHCCCCCCCEEEEEEEECCC-CEEEEEEECCCCCCEEE--EECCCCCEEECCCEEEEEEE-CC Q ss_conf 1545101314655565010120015706899997089-82999985157655036--51389985703866888832-89 Q gi|254780577|r 115 GGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIH-GNIGIVQIAGFVARRIV--CWVKPTMKVEAGMRFGIIRF-GS 190 (232) Q Consensus 115 ~G~V~~~~~~~G~~~~a~~~~~~~~NER~~~~~~~~~-~~i~~~qiag~~arrI~--~~~~~g~~v~~G~r~G~irf-GS 190 (232) -|++....-.||....-..+..+..+ ...+..+.++ -.+.+.-.|-.....|+ -...+|+.+++|+.+|-+.- .. T Consensus 9 ~~~~~~~~~~~~~ms~iP~dl~Ys~~-H~Wv~~e~d~~~~iGiT~~a~~~lG~I~~v~lp~~g~~v~~gd~~~~vEs~K~ 87 (155) T 3hgb_A 9 MGTLEAQTQGPGSMSDIPSDLHYTAE-HEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKS 87 (155) T ss_dssp ------------CCCCCCTTCEECTT-SEEEEEEETTEEEEEECHHHHHHHCSEEEEECCCTTCEECTTCEEEEEEESSC T ss_pred HEEEEECCCCCCCCCCCCCCCEECCC-CEEEEECCCCEEEEECCHHHHHHCCCEEEEEECCCCCEEECCCEEEEEEECCE T ss_conf 00003032589860218654678899-47999769987999039999975298799981579967607976899998340 Q ss_pred EEEEEECCCCEE Q ss_conf 899996399736 Q gi|254780577|r 191 RVDLFLPKDANI 202 (232) Q Consensus 191 ~vdi~lP~~~~~ 202 (232) ..+++-|-+.++ T Consensus 88 ~~~i~sPvsG~V 99 (155) T 3hgb_A 88 VSDLYAPISGKV 99 (155) T ss_dssp EEEEECSSSEEE T ss_pred EECCCCCCCCEE T ss_conf 201027836357 No 58 >1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C* Probab=27.76 E-value=3.2 Score=19.87 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=22.2 Q ss_pred CCEEEEEECCCCEEEEECCCEEEEEEE Q ss_conf 898999963997367622988993077 Q gi|254780577|r 189 GSRVDLFLPKDANIRVEIGQKTVAGET 215 (232) Q Consensus 189 GS~vdi~lP~~~~~~V~~Gq~V~aGeT 215 (232) |..+.-.+|.+-++.|++||.|++|+- T Consensus 204 G~~v~~~IP~GpeliV~~G~~v~~dqp 230 (289) T 1vf5_C 204 GKTVVDTIPAGPELIVSEGQAVKAGEA 230 (289) T ss_dssp SSCCCCCCCSSSCCCCCTTCCCTTSCC T ss_pred CCEEEEECCCCCEEEEECCCEEECCCC T ss_conf 989878618998588707976856985 No 59 >3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} PDB: 2edg_A Probab=27.11 E-value=25 Score=13.82 Aligned_cols=33 Identities=15% Similarity=0.304 Sum_probs=22.8 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCCCEE Q ss_conf 1389985703866888832-89899996399736 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDANI 202 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~~~ 202 (232) ...+|+.+++|+.+|-+.- ....+++-|-+.++ T Consensus 39 lp~~g~~v~~g~~~~~iEs~k~~~~i~sPvsG~V 72 (125) T 3klr_A 39 LPEVGTKLNKQEEFGALESVKAASELYSPLSGEV 72 (125) T ss_dssp CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEE T ss_pred CCCCCCEEECCCEEEEEEECCEEEEEECCCCEEE T ss_conf 7999989854860799997323667510344256 No 60 >1zko_A Glycine cleavage system H protein; TM0212, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A Probab=24.06 E-value=29 Score=13.45 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=25.4 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCCCEE Q ss_conf 1389985703866888832-89899996399736 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDANI 202 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~~~ 202 (232) ....|+++++|+.+|-+.- ....+++-|-+.++ T Consensus 52 lp~~G~~v~~g~~~~~iEs~K~~~~i~sPvsG~V 85 (136) T 1zko_A 52 LPEVGREVKKGEVVASIESVKAAADVYAPLSGKI 85 (136) T ss_dssp CCCTTCEECTTCEEEEEEESSCEEEEECSSCEEE T ss_pred CCCCCCEEECCCEEEEEEECCCEEEEECCCCEEE T ss_conf 7999988655976899998661577750354599 No 61 >1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5 Probab=22.26 E-value=22 Score=14.25 Aligned_cols=10 Identities=20% Similarity=0.232 Sum_probs=3.6 Q ss_pred EEECCCCCCC Q ss_conf 1314655565 Q gi|254780577|r 121 SVHRNGQFMN 130 (232) Q Consensus 121 ~~~~~G~~~~ 130 (232) +.-+||.... T Consensus 22 V~vrpG~tir 31 (86) T 1wxm_A 22 VTVRDGMSVY 31 (86) T ss_dssp EECCSSCBSH T ss_pred EEECCCCCHH T ss_conf 9954998999 No 62 >1so9_A Cytochrome C oxidase assembly protein CTAG; immunoglobulin-like fold, copper protein, structural proteomics in europe, spine; NMR {Sinorhizobium meliloti} SCOP: b.146.1.1 PDB: 1sp0_A Probab=22.02 E-value=32 Score=13.19 Aligned_cols=27 Identities=19% Similarity=0.401 Sum_probs=24.0 Q ss_pred ECCCCCCEEEEECCCCCEEECCCEEEE Q ss_conf 515765503651389985703866888 Q gi|254780577|r 159 IAGFVARRIVCWVKPTMKVEAGMRFGI 185 (232) Q Consensus 159 iag~~arrI~~~~~~g~~v~~G~r~G~ 185 (232) -||.....|.|++.+.|.++.||..=| T Consensus 90 ~a~~Yf~KieCFCF~~Q~L~pgE~~~m 116 (164) T 1so9_A 90 AAGAYFNKVQCFCFTETTLEPGEEMEM 116 (164) T ss_dssp SCSTTBTTSCCSSCSCCEECTTCEEEE T ss_pred HHHHHEECCCEEEEEEEEECCCCEEEE T ss_conf 966342223376641047589987986 No 63 >1ysl_A HMG-COA synthase; thiolase family, coenzymea, lyase; HET: CSD COA; 1.90A {Enterococcus faecalis} PDB: 1ysl_B* 1x9e_A 2hdb_A* Probab=20.84 E-value=33 Score=13.03 Aligned_cols=19 Identities=26% Similarity=0.623 Sum_probs=15.7 Q ss_pred CCCCEEECCCEEEEEEECC Q ss_conf 8998570386688883289 Q gi|254780577|r 172 KPTMKVEAGMRFGIIRFGS 190 (232) Q Consensus 172 ~~g~~v~~G~r~G~irfGS 190 (232) ..+..+++||+++++-||| T Consensus 309 ~~~~~l~~Gd~Ill~syGs 327 (402) T 1ysl_A 309 ENATTLTAGNQIGLFSYGS 327 (402) T ss_dssp HHCTTCCTTCEEEEEEEET T ss_pred HHCCCCCCCCEEEEEEECC T ss_conf 8477689959999999984 No 64 >3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} Probab=20.59 E-value=34 Score=13.00 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=25.8 Q ss_pred ECCCCCEEECCCEEEEEEE-CCEEEEEECCCCEE Q ss_conf 1389985703866888832-89899996399736 Q gi|254780577|r 170 WVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDANI 202 (232) Q Consensus 170 ~~~~g~~v~~G~r~G~irf-GS~vdi~lP~~~~~ 202 (232) ....|+.+++|+.+|.+.- ....+++-|-+.++ T Consensus 61 lp~~g~~v~~g~~~~~IEs~K~v~~i~sPvsG~V 94 (143) T 3mxu_A 61 LPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEV 94 (143) T ss_dssp CCCTTCEECTTCEEEEEEESSCEEEEECSSSEEE T ss_pred ECCCCCEEECCCEEEEEEECCEEEEEECCCCEEE T ss_conf 4588767835970899984455886430354699 No 65 >1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B* Probab=20.39 E-value=26 Score=13.70 Aligned_cols=21 Identities=24% Similarity=0.502 Sum_probs=8.4 Q ss_pred CEEEEEECCCC--EEEEECCCEE Q ss_conf 98999963997--3676229889 Q gi|254780577|r 190 SRVDLFLPKDA--NIRVEIGQKT 210 (232) Q Consensus 190 S~vdi~lP~~~--~~~V~~Gq~V 210 (232) |++-++||.+. .+.|+.|+++ T Consensus 2 ~~iRv~LPngq~T~V~vrpG~tl 24 (77) T 1c1y_B 2 NTIRVFLPNKQRTVVNVRNGMSL 24 (77) T ss_dssp CEEEEEETTTEEEEEECCTTCBH T ss_pred CEEEEECCCCCEEEEEECCCCCH T ss_conf 64999868998689995489899 No 66 >1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, cytosolic assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 Probab=20.10 E-value=34 Score=12.93 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=27.2 Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCC Q ss_conf 99999999999713888762127660886305414323311573 Q gi|254780577|r 42 FGAILTVWCAYFFRDPERVTPIDPNLLISPADGLVSAICEMSPP 85 (232) Q Consensus 42 ~~~~~~l~~~~FFRdP~R~~~~~~~~ivSPaDG~V~~i~~~~~~ 85 (232) +.++..+++.-|=| |...+--.+.++++|-||+-.-.-.+-+. T Consensus 138 ~a~~~givfak~sr-p~~ri~FS~~avI~~~dg~~~L~fRv~n~ 180 (333) T 1p7b_A 138 IALSTGLVFARFAR-PRAKIMFARHAIVRPFNGRMTLMVRAANA 180 (333) T ss_dssp HHHHHHHHHHHHTS-CCCCCEECSCEEEEECSSSEEEEEEEECC T ss_pred HHHHHHHHHHHHHC-CCCCEECCCCEEEEECCCCEEEEEEECCC T ss_conf 99999999999718-65523102534998438956999996255 No 67 >3ixz_B Potassium-transporting ATPase subunit beta; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} Probab=20.08 E-value=34 Score=12.93 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=17.8 Q ss_pred HHHHHHHHHHHHCCCCCCCC----CCCCEEEEE Q ss_conf 99999999997138887621----276608863 Q gi|254780577|r 43 GAILTVWCAYFFRDPERVTP----IDPNLLISP 71 (232) Q Consensus 43 ~~~~~l~~~~FFRdP~R~~~----~~~~~ivSP 71 (232) ++++++++++.+.||..+.- +.|+.-+.| T Consensus 54 ~Fa~~m~v~~~tl~~~~P~~q~~~s~PGL~~rP 86 (290) T 3ixz_B 54 IFALCIYVLMRTIDPYTPDYQDQLKSPGVTLRP 86 (290) T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEC T ss_conf 999999999987688899865368899646437 Done!