HHSEARCH alignment of GI: 254780577 and SCOP domain: d1gpra_

Alignment
>d1gpra_ b.84.3.1 (A:) Glucose permease IIa domain, IIa-glc {Bacillus subtilis [TaxId: 1423]}
Probab=98.09  E-value=1.3e-05  Score=54.44  Aligned_cols=136  Identities=11%  Similarity=0.177  Sum_probs=91.5

Q ss_pred             CCCCEEEEECCCCEEEEEECCCCCHHHCCCCCEEEEEEEECCCCCCEEEEEECCEEEEEEECCCCCCCHHHCCCCCCCEE
Q ss_conf             27660886305414323311573000004687269999605110124897531545101314655565010120015706
Q gi|254780577|r   63 IDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNER  142 (232)
Q Consensus        63 ~~~~~ivSPaDG~V~~i~~~~~~~~~~~~~~~~~~I~Ifls~~dvH~~raP~~G~V~~~~~~~G~~~~a~~~~~~~~NER  142 (232)
                      .++..++||++|++..++++.|+.-.+-.=+  .=+.|  -|-+ +...||++|+|..+.-.                 +
T Consensus         7 ~~~~~i~aP~~G~vi~L~~V~D~vFs~~~~G--~G~aI--~P~~-~~v~AP~~G~I~~i~~T-----------------~   64 (158)
T d1gpra_           7 IGEEVFVSPITGEIHPITDVPDQVFSGKMMG--DGFAI--LPSE-GIVVSPVRGKILNVFPT-----------------K   64 (158)
T ss_dssp             TSCBCCBCSSSEEEEEGGGSSSHHHHTTSSC--EEEEE--EESS-CEEECSSSEEEEEECTT-----------------S
T ss_pred             CCCEEEEECCCCEEEEHHHCCCHHHCCCCCC--CEEEE--EECC-CEEEEEECEEEEEECCC-----------------C
T ss_conf             6987999447867988013978475557833--64999--9739-98998208599998379-----------------9


Q ss_pred             EEEEEECCCCEEEEEEECCC----CCCEEEEECCCCCEEECCCEEEEEEE--------CCEEEEEECC--CC-EEEEECC
Q ss_conf             89999708982999985157----65503651389985703866888832--------8989999639--97-3676229
Q gi|254780577|r  143 QSLVLKTIHGNIGIVQIAGF----VARRIVCWVKPTMKVEAGMRFGIIRF--------GSRVDLFLPK--DA-NIRVEIG  207 (232)
Q Consensus       143 ~~~~~~~~~~~i~~~qiag~----~arrI~~~~~~g~~v~~G~r~G~irf--------GS~vdi~lP~--~~-~~~V~~G  207 (232)
                      -.+.+++++|.-.+++++--    -..-..+++++||++++||.+.-+-+        --.+-+.+.+  ++ .+.+...
T Consensus        65 HAigi~t~~G~evLiHiGiDTV~L~G~gF~~~v~~Gd~Vk~G~~L~~~D~~~i~~~g~~~~t~vvvtn~~~~~~i~~~~~  144 (158)
T d1gpra_          65 HAIGLQSDGGREILIHFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDAVKPNVPSLMTPIVFTNLAEGETVSIKAS  144 (158)
T ss_dssp             SEEEEEETTSCEEEEECSBSCGGGTTTTEEECCCTTCEECTTCEEEEECHHHHGGGSSBCCEEEEESSCCTTCCEEECCC
T ss_pred             CEEEEEECCCEEEEEEEEECCCCCCCCCEEEEECCCCEECCCCEEEEECHHHHHHHCCCCCEEEEEEECCCCCEEEEECC
T ss_conf             79999948972999998005201489606999868999968989777589999960999734999971630635887058


Q ss_pred             CEEEEEEEEEEEE
Q ss_conf             8899307787971
Q gi|254780577|r  208 QKTVAGETVIAEF  220 (232)
Q Consensus       208 q~V~aGeTila~l  220 (232)
                      ..|.+|++.|-++
T Consensus       145 ~~v~~g~~~i~~v  157 (158)
T d1gpra_         145 GSVNREQEDIVKI  157 (158)
T ss_dssp             SEECTTCBCCEEE
T ss_pred             CCEECCCCEEEEE
T ss_conf             8477199527997


SCOP domain information

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Duplicated hybrid motif
family: Glucose permease-like
domain: Glucose permease IIa domain, IIa-glc
species: Bacillus subtilis [TaxId: 1423]