RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780577|ref|YP_003064990.1| phosphatidylserine
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
(232 letters)
>gnl|CDD|180005 PRK05305, PRK05305, phosphatidylserine decarboxylase; Provisional.
Length = 206
Score = 306 bits (786), Expect = 4e-84
Identities = 113/210 (53%), Positives = 148/210 (70%), Gaps = 5/210 (2%)
Query: 13 PIHFHGWPFIVSFAAFTIIIGMWSYGLLWFGAILTVWCAYFFRDPERVTPIDPNLLISPA 72
PIH G+PFI + A +I+G+ + L W G +LT++C YFFRDPERV P D L++SPA
Sbjct: 1 PIHREGYPFIAAAALVLLILGLLWWPLAWIGLLLTLFCLYFFRDPERVIPTDDGLVVSPA 60
Query: 73 DGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAA 132
DG V I E+ PP +E LR+SIFM++F+ HVNR P+ G V K +R G+F+NA
Sbjct: 61 DGKVVVIEEVVPP----YGDEPRLRISIFMSVFNVHVNRAPVSGTVTKVEYRPGKFLNAF 116
Query: 133 LDKASEQNERQSLVLKT-IHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIRFGSR 191
LDKASE+NER ++V++T G IG+VQIAG +ARRIVC+VK +VE G RFG+IRFGSR
Sbjct: 117 LDKASEENERNAVVIETADGGEIGVVQIAGLIARRIVCYVKEGDEVERGERFGLIRFGSR 176
Query: 192 VDLFLPKDANIRVEIGQKTVAGETVIAEFN 221
VD++LP V +GQK VAGETV+A
Sbjct: 177 VDVYLPLGTEPLVSVGQKVVAGETVLARLP 206
>gnl|CDD|129268 TIGR00164, PS_decarb_rel, phosphatidylserine decarboxylase
precursor-related protein. It is unclear whether this
protein is a form of phosphatidylserine decarboxylase or
is a related enzyme. It is found in Neisseria
gonorrhoeae, Mycobacterium tuberculosis, and several
archaeal species, all of which lack known
phosphatidylserine decarboxylase.
Length = 189
Score = 198 bits (506), Expect = 8e-52
Identities = 88/187 (47%), Positives = 120/187 (64%), Gaps = 7/187 (3%)
Query: 41 WFGAI---LTVWCAYFFRDPERVTPIDPNLLISPADGLVSAICEMSPPPELELENEVMLR 97
W + T++ FFRDP+R P P ++SPADG + + P + L+
Sbjct: 7 WISILFWVFTLFTLQFFRDPDREIPQGPEAVLSPADGRIDVVERARRP----FPDGDGLK 62
Query: 98 LSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIV 157
+SIFM+ FD HVNR P GG+V H +G F+ A L KAS +NER ++++KT G +G+V
Sbjct: 63 ISIFMSPFDVHVNRAPAGGKVTYVKHIDGSFVPAFLRKASTENERNAVLIKTASGEVGVV 122
Query: 158 QIAGFVARRIVCWVKPTMKVEAGMRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVI 217
QIAGFVARRIVC+VK KV G R G+IRFGSRVDL+LP++A +V++G+K AGETV+
Sbjct: 123 QIAGFVARRIVCYVKEGEKVSRGQRIGMIRFGSRVDLYLPENAQAQVKVGEKVTAGETVL 182
Query: 218 AEFNSTK 224
A T
Sbjct: 183 ARLPLTD 189
>gnl|CDD|179679 PRK03934, PRK03934, phosphatidylserine decarboxylase; Provisional.
Length = 265
Score = 43.8 bits (104), Expect = 4e-05
Identities = 48/206 (23%), Positives = 75/206 (36%), Gaps = 45/206 (21%)
Query: 58 ERVTPIDPNLLISPADGLVSA-----------ICEMSPPPELELENEVMLRLSI---FMN 103
R DPN+ ISP D L++ I M E EL E L ++N
Sbjct: 62 PREFDEDPNIFISPCDSLITECGSLEEDKALQIKGMEYSIE-ELLGESNSELVNGFDYIN 120
Query: 104 IF----DCHVNRMPIGGEVIKSVHRNGQFMNAA---LDKASE---QNERQSLVLKTIHG- 152
+ D H P E++++ + G+ L+K +NER L K G
Sbjct: 121 FYLSPKDYHRYHAPCDLEILEARYIPGKLYPVNLPSLEKNKNLFVKNERVVLKCKDKKGK 180
Query: 153 ----------NIGIVQI-------AGFVARRIVCWVKPTMKVEAGMRFGIIRFGSRVDLF 195
N+G ++ AR I + +K++ G G GS + LF
Sbjct: 181 RLYFVFVGALNVGKMRFNFDERIQTNAKARFIQTYEYENLKLKKGEELGNFEMGSTIVLF 240
Query: 196 LPKDA-NIRVEIGQKTVAGETVIAEF 220
K + ++ G+ GE+ I E
Sbjct: 241 SQKGSLEFNLKAGKSVKFGES-IGEI 265
>gnl|CDD|161737 TIGR00163, PS_decarb, phosphatidylserine decarboxylase precursor.
Phosphatidylserine decarboxylase is synthesized as a
single chain precursor. Generation of the pyruvoyl
active site from a Ser is coupled to cleavage of a
Gly-Ser bond between the larger (beta) and smaller
(alpha chains). It is an integral membrane protein. A
closely related family, possibly also active as
phosphatidylserine decarboxylase, falls under model
TIGR00164.
Length = 238
Score = 34.0 bits (78), Expect = 0.034
Identities = 50/218 (22%), Positives = 74/218 (33%), Gaps = 56/218 (25%)
Query: 51 AYFFRD-PERVTPID--PNLLISPADGLVSAICEMSPPPEL----------ELENEVMLR 97
+F R P+D PN L+SPADG++S + ++P L EL E
Sbjct: 17 EFFIRPLKLERRPVDKEPNALVSPADGVISEVGIINPNQILQVKGMDYSLEELLGEKNPL 76
Query: 98 LSIFMN-IF---------DCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQ-------- 139
F N F D H P + K + G +++ Q
Sbjct: 77 SPYFRNGGFFVVTYLSPRDYHRFHSPCDCRLRKMRYFPGDLF--SVNPLGLQNVPNLFVR 134
Query: 140 NERQSLVLKTIHGNIGIVQI------------AGFV-----ARRIVCWVKP---TMKVEA 179
NER LV T GN+ ++ + G + W +K+
Sbjct: 135 NERVILVFDTEFGNMLMIPVGATNVGSIRTNFDGNIQTNPRHEFTQTWTYNALGPVKLLK 194
Query: 180 GMRFGIIRFGSRVDLFLPKDA---NIRVEIGQKTVAGE 214
G G GS V L DA + + +GQ+ GE
Sbjct: 195 GEEMGYFELGSTVILLFEADAFQLSAHLAVGQEVKIGE 232
>gnl|CDD|178818 PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.
Length = 288
Score = 28.6 bits (65), Expect = 1.6
Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 2/20 (10%)
Query: 62 PID--PNLLISPADGLVSAI 79
PID PN L+SPADG +S +
Sbjct: 77 PIDEDPNALVSPADGAISQL 96
>gnl|CDD|162113 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger.
Length = 1096
Score = 27.7 bits (61), Expect = 3.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Query: 5 QAIRKILVPIHFHGW---P----------FIVSFAAFTIIIGMWSYGLLWF 42
QAI L+PI F W P F+++F + I M+SY ++W+
Sbjct: 905 QAIYLFLLPIVFPLWLTVPDVRRQEARKFFVITFLGSIMWIAMFSYLMVWW 955
>gnl|CDD|184832 PRK14815, PRK14815, NADH dehydrogenase subunit B; Provisional.
Length = 183
Score = 27.2 bits (60), Expect = 3.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 179 AGMRFGIIRFGSRVDLFLPKDANIRVEIGQKT 210
A RF I RFG+ V F P+ A++ + G T
Sbjct: 53 ACSRFDISRFGAEVMRFSPRQADVMIVAGTVT 84
>gnl|CDD|132166 TIGR03122, one_C_dehyd_C, formylmethanofuran dehydrogenase subunit
C. Members of this largely archaeal protein family are
subunit C of the formylmethanofuran dehydrogenase.
Nomenclature in some bacteria may reflect inclusion of
the formyltransferase described by TIGR03119 as part of
the complex, and therefore call this protein
formyltransferase/hydrolase complex Fhc subunit C. Note
that this model does not distinguish tungsten (FwdC)
from molybdenum-containing (FmdC) forms of this enzyme.
Length = 260
Score = 26.9 bits (60), Expect = 4.3
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 150 IHGNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIRFGSRVDLFLP 197
I GN GI I+ + M+ G I G + D LP
Sbjct: 168 IEGNAGIFAGIHMNGGTIIIDGDVGRRPGGEMKRGTIVVGGKPDELLP 215
>gnl|CDD|179097 PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional.
Length = 297
Score = 26.8 bits (60), Expect = 4.3
Identities = 49/171 (28%), Positives = 71/171 (41%), Gaps = 36/171 (21%)
Query: 62 PID--PNLLISPADGLVSA---ICEMS---------PPPEL----ELENE------VMLR 97
PID N+LISP DG + A I S EL EL + ++LR
Sbjct: 100 PIDQGENILISPGDGRLLAYENIDLNSLFQVKGKTYSLKELLGDPELAKKYAGGTCLILR 159
Query: 98 LSIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNA---ALDKASE---QNERQSLVLKTIH 151
L D H P G ++ G + + AL K E +N+R+ + K+ +
Sbjct: 160 L----CPTDYHRFHFPDSGICEETRKIKGHYYSVNPIALKKIFELFCENKREWSIFKSEN 215
Query: 152 -GNIGIVQIAGFVARRIVCWVKPTMKVEAGMRFGIIRF-GSRVDLFLPKDA 200
G+I V++ I+ KP KV+ G G +F GS V LF K+
Sbjct: 216 FGDILYVEVGATCVGSIIQTYKPNKKVKKGDEKGYFKFGGSTVILFFEKNK 266
>gnl|CDD|184718 PRK14510, PRK14510, putative bifunctional
4-alpha-glucanotransferase/glycogen debranching enzyme;
Provisional.
Length = 1221
Score = 26.8 bits (59), Expect = 5.4
Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 18/56 (32%)
Query: 51 AYFFRDPERVTPIDPN-------LLISPADGLVSAICEMSPPPELELENEVMLRLS 99
DPER +P P+ LLIS PE L E L
Sbjct: 770 PLGLGDPERASPYQPSSRRAGNPLLISLDL-----------LPEAGLLTENEAALG 814
>gnl|CDD|178526 PLN02938, PLN02938, phosphatidylserine decarboxylase.
Length = 428
Score = 26.3 bits (58), Expect = 7.4
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 51 AYFFR---DPERVTPIDPNLLISPADGLVSAICEMSPP 85
+F R + R DPN L+SP DG+V E+ P
Sbjct: 146 EFFVRSLKEGARPIDPDPNCLVSPVDGIVLRFGELKGP 183
>gnl|CDD|183155 PRK11477, PRK11477, carbohydrate diacid transcriptional activator
CdaR; Provisional.
Length = 385
Score = 26.3 bits (58), Expect = 7.6
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 102 MNIFDCHVNRMPIGGEVIKS--VHRNGQFMNAAL 133
M I D ++N M G +I S R G+ AL
Sbjct: 19 MRIIDTNINVMDARGRIIGSGDRERIGELHEGAL 52
>gnl|CDD|180876 PRK07198, PRK07198, hypothetical protein; Validated.
Length = 418
Score = 26.2 bits (58), Expect = 8.0
Identities = 23/53 (43%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 165 RRIVCWVK-PTMKVEAGMRFGIIRFGSRV---DLFLPKDANIRVEIGQKTVAG 213
RRI V MK +A GI G RV D +P DA RVEI K AG
Sbjct: 347 RRIHRLVSMSNMKYDAITGSGI-EVGERVPIPDELIPADA--RVEIDAKKAAG 396
>gnl|CDD|180808 PRK07048, PRK07048, serine/threonine dehydratase; Validated.
Length = 321
Score = 26.1 bits (58), Expect = 8.6
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 11/50 (22%)
Query: 156 IVQIAGFVARRIVCWVKPT----------MKVEA-GMRFGIIRFGSRVDL 194
+V F A R+ V+PT KV G R G+I G VDL
Sbjct: 263 LVDAMRFFAERMKIVVEPTGCLGAAAALRGKVPLKGKRVGVIISGGNVDL 312
>gnl|CDD|136171 PRK07045, PRK07045, putative monooxygenase; Reviewed.
Length = 388
Score = 26.0 bits (57), Expect = 8.9
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 101 FMNIFDCHVNRMPIGGEVIKSVHR-NGQFMNAALDKASEQNERQSLVLK 148
MN+ H + + G+ S+H GQ MN A++ A E L L
Sbjct: 276 RMNLDRYHKRNVVLLGDAAHSIHPITGQGMNLAIEDAGELGACLDLHLS 324
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.328 0.142 0.448
Gapped
Lambda K H
0.267 0.0716 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,925,599
Number of extensions: 254072
Number of successful extensions: 694
Number of sequences better than 10.0: 1
Number of HSP's gapped: 689
Number of HSP's successfully gapped: 42
Length of query: 232
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 142
Effective length of database: 4,049,753
Effective search space: 575064926
Effective search space used: 575064926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.0 bits)