BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780577|ref|YP_003064990.1| phosphatidylserine
decarboxylase [Candidatus Liberibacter asiaticus str. psy62]
         (232 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 232

 Score =  476 bits (1224), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 1   MNLIQAIRKILVPIHFHGWPFIVSFAAFTIIIGMWSYGLLWFGAILTVWCAYFFRDPERV 60
           MNLIQAIRKILVPIHFHGWPFIVSFAAFTIIIGMWSYGLLWFGAILTVWCAYFFRDPERV
Sbjct: 1   MNLIQAIRKILVPIHFHGWPFIVSFAAFTIIIGMWSYGLLWFGAILTVWCAYFFRDPERV 60

Query: 61  TPIDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIK 120
           TPIDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIK
Sbjct: 61  TPIDPNLLISPADGLVSAICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIGGEVIK 120

Query: 121 SVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAG 180
           SVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAG
Sbjct: 121 SVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIGIVQIAGFVARRIVCWVKPTMKVEAG 180

Query: 181 MRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLLVCRT 232
           MRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLLVCRT
Sbjct: 181 MRFGIIRFGSRVDLFLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLLVCRT 232


>gi|254780142|ref|YP_003064555.1| DNA-directed RNA polymerase subunit beta' [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1398

 Score = 25.8 bits (55), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 40/184 (21%), Positives = 76/184 (41%), Gaps = 33/184 (17%)

Query: 60   VTPIDPNLLISPADGLVS----AICEMSPPPELELENEVMLRLSIFMNIFDCHVNRMPIG 115
            VT +D + + SP DG+V      +C  S    + +     L++ + M+  + + +R+  G
Sbjct: 938  VTVMDRSFIESPCDGIVKIKNRNVCRNSTNDLISMGRNTTLQI-LDMSGQEQYSHRIMYG 996

Query: 116  GEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIG-------------IVQIAGF 162
             ++      +G  +     + SE +     ++  + G +G             I +  G 
Sbjct: 997  AKLFVD---DGGVIECG-QRISEWDPHTFPIITEVSGTVGFEDLVDGISVIESIGESTGI 1052

Query: 163  VARRIVCW--------VKPTMKV--EAGMRFGIIRFGSRVDLFLPKDANIRVEIGQKTVA 212
              R+++ W        +KP + V  E G+     R G+    FLP DA + V  GQK   
Sbjct: 1053 AKRKVIDWRFASRSQNLKPAIVVTDENGVVLKSAR-GTDARWFLPVDALLSVSPGQKVST 1111

Query: 213  GETV 216
            G+ +
Sbjct: 1112 GDVL 1115


>gi|254780606|ref|YP_003065019.1| cell division protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 744

 Score = 23.5 bits (49), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)

Query: 195 FLPKDANIRVEIGQKTVAGETVIAEFNSTKPPLLVCRT 232
           F    AN+ + +G KT++GE+VIA+  +  P +LV  T
Sbjct: 385 FSHSKANLALCLG-KTISGESVIADL-ANMPHILVAGT 420


>gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 411

 Score = 23.5 bits (49), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 99  SIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIG 155
           SIF  + + H+N   I    I++V  +GQ+++      S   E+   VL     NIG
Sbjct: 283 SIFSPLAEAHINIDMI----IQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIG 335


>gi|254780413|ref|YP_003064826.1| PAS/PAC sensor signal transduction histidine kinase [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 820

 Score = 23.1 bits (48), Expect = 4.3,   Method: Composition-based stats.
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 81  EMSPPPELELENEV 94
           + SPPP L ++N+V
Sbjct: 227 QQSPPPHLRMKNKV 240


>gi|254780600|ref|YP_003065013.1| CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 200

 Score = 22.7 bits (47), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)

Query: 39  LLWFGAILTVWCAY-FFR 55
           LLW  A+LT++  Y +FR
Sbjct: 170 LLWISALLTIYSGYDYFR 187


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.142    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,794
Number of Sequences: 1233
Number of extensions: 5761
Number of successful extensions: 14
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 6
length of query: 232
length of database: 328,796
effective HSP length: 71
effective length of query: 161
effective length of database: 241,253
effective search space: 38841733
effective search space used: 38841733
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 37 (18.9 bits)