RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (298 letters)



>2ajt_A L-arabinose isomerase; arabinose catabolism, carbohydrate
           metabolism, structural genomics, PSI, protein structure
           initiative; 2.60A {Escherichia coli} SCOP: b.43.2.2
           c.85.1.2 PDB: 2hxg_A
          Length = 500

 Score = 31.0 bits (70), Expect = 0.37
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 11/102 (10%)

Query: 14  KKKYNVLPDDFVVPSDQDEARYS--FYKGKRWSLQEKEIPPFKFLFPNL--VTILAICAG 69
           +  Y + P   +    +     +     G +  L++     F   F +L  +  L     
Sbjct: 234 ESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLP-GLA 292

Query: 70  FS-----GIGSAIEGNYETAVCMVLVAAFLDGIDGRIARFME 106
                  G G A EG+++TA  + ++     G+ G    FME
Sbjct: 293 VQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGG-TSFME 333


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.6 bits (65), Expect = 0.79
 Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 8/31 (25%)

Query: 106 EATSKFGAQLDSLADVINFGVAPSLVTYIAV 136
           +A  K  A L   AD      AP+L    A+
Sbjct: 20  QALKKLQASLKLYAD----DSAPAL----AI 42


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.5 bits (66), Expect = 1.0
 Identities = 36/185 (19%), Positives = 53/185 (28%), Gaps = 82/185 (44%)

Query: 8   KEIPRGKKKYNVL---PDDFVV-------------------PSDQDEARYSFYKGKRWSL 45
             +P GK+    L     + VV                   PS  D++R  F + K    
Sbjct: 358 SHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK---- 413

Query: 46  QEKEIPPF--KFL-----F--PNL--VTILAICAGFSGIGSAIEGN------YETAVCMV 88
                  F  +FL     F    L   + L I         +          Y+T     
Sbjct: 414 -----LKFSNRFLPVASPFHSHLLVPASDL-INKDLVKNNVSFNAKDIQIPVYDTF---- 463

Query: 89  LVAAFLDGIDGR-------------IAR---FMEATSKFGAQLDSLADVINFGVAPSLVT 132
                 DG D R             I R     E T++F A       +++FG  P   +
Sbjct: 464 ------DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA-----THILDFG--PGGAS 510

Query: 133 YIAVL 137
            + VL
Sbjct: 511 GLGVL 515


>2j8s_A ACRB, acriflavine resistance protein B; membrane protein/complex,
            designed ankyrin repeat protein, multidrug resistance
            protein; HET: LMT LMU; 2.54A {Escherichia coli} PDB:
            2dhh_A 1iwg_A 2dr6_A* 2drd_A* 2hqf_A 2hqg_A 2hqd_A 2hqc_A
            2i6w_A 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A*
            2w1b_A* 3d9b_A 1t9x_A* 1t9t_A* 1t9v_A* ...
          Length = 1055

 Score = 27.8 bits (61), Expect = 3.0
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 240  VLPIVLCSVAYIAFMIHFLWEMI---IFSTLCYIMLLPISFYCWKKRYGIKPEQKKH 293
            V+P+V+ + A           ++   + +T+  I  +P+ F   ++R+  K E  +H
Sbjct: 986  VMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFSRKNEDIEH 1042


>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
           membrane, membrane, transmembrane, transport protein;
           HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
           3gi9_C* 3gi8_C
          Length = 444

 Score = 27.7 bits (60), Expect = 3.6
 Identities = 13/125 (10%), Positives = 36/125 (28%), Gaps = 4/125 (3%)

Query: 160 ARFNIMNDCDEKDNWKSEYFVGVPAPLGAILLMLPLYINFLGFKISVIYGYGSTIYAMII 219
           A+   + +  E+  W              +L  L   +  +    + I      +  + +
Sbjct: 303 AKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFNMEGV----ASITSAVFMVIYLFV 358

Query: 220 SFLLCSRLPVWSGKKIHRKFVLPIVLCSVAYIAFMIHFLWEMIIFSTLCYIMLLPISFYC 279
                  +    G+K    F   +VL     + +        + +  +   + + I    
Sbjct: 359 ILSHYILIDEVGGRKEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEII 418

Query: 280 WKKRY 284
           ++K  
Sbjct: 419 YRKVT 423


>2e60_A SFRS8 protein, splicing factor, arginine/serine-rich 8; SURP
          domain, structural genomics, NPPSFA; NMR {Homo sapiens}
          Length = 101

 Score = 26.8 bits (59), Expect = 5.8
 Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 11/51 (21%)

Query: 20 LPDDFVVPSDQDE-------ARYSFYKGKRW--SLQEKEI--PPFKFLFPN 59
          +P D  +P            A +   +G ++   L+ K+     F FL  +
Sbjct: 15 VPSDVELPPTAKMHAIIERTASFVCRQGAQFEIMLKAKQARNSQFDFLRFD 65


>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology
           domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC,
           nuclear protein; 1.55A {Gallus gallus}
          Length = 174

 Score = 26.8 bits (59), Expect = 6.1
 Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 5   LQCKEIPRGKKKYNVLPDDFVVPSDQDEARYSFYKGKRWSLQ--EKEIPPFKFLFP 58
           +  KE  +   +     D +V  S       SF K K W++        P     P
Sbjct: 107 MFVKEYFKLCPENFRDEDVYVCESRYSAKTKSFKKIKLWTMPVSSVRFVPRDVPLP 162


>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold,
           structural genomics, PSI, protein structure initiative;
           2.40A {Mycobacterium tuberculosis}
          Length = 434

 Score = 26.5 bits (57), Expect = 6.9
 Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 5/60 (8%)

Query: 65  AICAGFSGIGSAIEGNYETAVCMVLVAAFL-----DGIDGRIARFMEATSKFGAQLDSLA 119
            +    SGI +  +   E     V +   L       +     R M    +    L    
Sbjct: 51  LLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRIELRRMGYLQRMSTVLSRRL 110


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.329    0.143    0.454 

Gapped
Lambda     K      H
   0.267   0.0496    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,735,414
Number of extensions: 126999
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 17
Length of query: 298
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 206
Effective length of database: 3,462,782
Effective search space: 713333092
Effective search space used: 713333092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 56 (25.9 bits)