RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780578|ref|YP_003064991.1| phosphatidylserine synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (298 letters)



>d1s0pa_ a.192.1.1 (A:) N-terminal domain of adenylylcyclase
           associated protein, CAP {Dictyostelium discoideum
           [TaxId: 44689]}
          Length = 176

 Score = 26.6 bits (59), Expect = 2.7
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 90  VAAFLDGIDGRIARFMEATSKFGAQLDSLADVI 122
           V  F + +D  I  F+  + K   ++ +  + +
Sbjct: 2   VKEFQNLVDQHITPFVALSKKLAPEVGNQVEQL 34


>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase
           {Phormidium lapideum [TaxId: 32060]}
          Length = 193

 Score = 26.1 bits (57), Expect = 3.8
 Identities = 7/84 (8%), Positives = 21/84 (25%), Gaps = 3/84 (3%)

Query: 200 LGFKISVIYGYGSTIYAMIISFLLCSRLPVWSGKKIHRKFVLPIVLCSVAYIAFMIHFLW 259
            G  + +    G         ++      V S K    +    +V+     +      + 
Sbjct: 29  AGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAWSR---EMVVKVKEPLPAEYDLMQ 85

Query: 260 EMIIFSTLCYIMLLPISFYCWKKR 283
           +  +  T  ++           + 
Sbjct: 86  KDQLLFTYLHLAAARELTEQLMRV 109


>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 149

 Score = 25.6 bits (56), Expect = 5.1
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 12 RGKKKYNVL---PDDFVVPSDQDEARYSFYKGKRWSLQEKEIPPFK 54
             KKYN++     D V  +  ++AR       +   QE+E+P   
Sbjct: 17 NTTKKYNIMAFNAADKVNFATWNQARLERDLSNKKIYQEEEMPESG 62


>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
           capensis omega virus [TaxId: 12541]}
          Length = 539

 Score = 25.3 bits (55), Expect = 5.6
 Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 1/35 (2%)

Query: 52  PFKFLFPNLVTILAICAGFSGIGSAIEGNYETAVC 86
              F  P          GF GI  +++ N  TAVC
Sbjct: 414 AISFTNPG-FDRNLDLPGFGGIRDSLDVNMSTAVC 447


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.143    0.454 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,198,059
Number of extensions: 57035
Number of successful extensions: 136
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 11
Length of query: 298
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 213
Effective length of database: 1,240,546
Effective search space: 264236298
Effective search space used: 264236298
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.7 bits)