RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780579|ref|YP_003064992.1| hypothetical protein
CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle,
structural genomics, structure 2 function project, S2F,
unknown function; 1.80A {Escherichia coli K12}
(A:32-182)
Length = 151
Score = 73.6 bits (180), Expect = 2e-14
Identities = 18/143 (12%), Positives = 39/143 (27%), Gaps = 25/143 (17%)
Query: 35 PSVSAIVVLT-GEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPI-------- 85
+++ I+ A ++ +Q + G+ HS +
Sbjct: 4 YQADCVILAGNAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSAIAQHPHYNTIRTT 63
Query: 86 --------------RQDLAECCIDIGYKALNTEGNAQEASAWAEKNNF--HHVLIVTHDY 129
+ I I ++ N NA+ + A + H ++V
Sbjct: 64 GRAEATILADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALLNQAVERVHTAIVVQDPT 123
Query: 130 HMPRTFLELQRINSTVQFIPYPI 152
RT +R+ P +
Sbjct: 124 MQRRTMATFRRMTGDNPDAPRWL 146
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A
{Escherichia coli} (A:)
Length = 128
Score = 31.7 bits (72), Expect = 0.075
Identities = 10/71 (14%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT--FLELQRIN 142
+R+ + ++G+ + + +A + + V+ D++MP L+ I
Sbjct: 16 MRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVIS---DWNMPNMDGLELLKTIR 72
Query: 143 STVQFIPYPII 153
+ P++
Sbjct: 73 AXXAMSALPVL 83
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator,
structural proteomics in europe, spine, structural
genomics; NMR {Sinorhizobium meliloti} (A:)
Length = 129
Score = 30.2 bits (68), Expect = 0.24
Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPR----TFLELQR 140
R L + +G+K + G+ ++ +N H V+ D++MP+ L+ R
Sbjct: 18 SRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHHLVIS---DFNMPKMDGLGLLQAVR 74
Query: 141 INSTVQFIPYPIISHDLEE 159
N + + I++ +
Sbjct: 75 ANPATKKAAFIILTAQGDR 93
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal
transduction; 1.90A {Thermotoga maritima} (A:)
Length = 120
Score = 29.4 bits (66), Expect = 0.43
Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT--FLELQRIN 142
+R L + GY+ N +EA ++ V + D MP ++ I
Sbjct: 14 MRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTM---DITMPEMNGIDAIKEIM 70
Query: 143 STVQFIPYPIIS 154
+ S
Sbjct: 71 KIDPNAKIIVCS 82
>1s8n_A Putative antiterminator; structural genomics,
transcriptional antiterminator, two component system,
PSI; 1.48A {Mycobacterium tuberculosis H37RV} (A:1-143)
Length = 143
Score = 29.1 bits (65), Expect = 0.44
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMP 132
IR DLAE + GY+ + G+ QEA AE + V++ D MP
Sbjct: 25 IRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIM---DVKMP 69
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 28.2 bits (62), Expect = 0.84
Identities = 21/134 (15%), Positives = 50/134 (37%), Gaps = 9/134 (6%)
Query: 78 ILLQKIPIRQDLAECCIDIG-YKALNTEGNAQEASAWAEKNNFHHVLIVTH---DYHMPR 133
L + + + + ++G Y + T +++ K + ++I T M R
Sbjct: 194 CLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKID-AQIVIGTPGTVMDLMKR 252
Query: 134 TFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLKILLLSIQLSLSTQTA 193
L+ + ++ + L++ + ++ LL +I+L S S +
Sbjct: 253 RQLDARD----IKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKY 308
Query: 194 SQFFITLIEEITVK 207
++ F EI +K
Sbjct: 309 AERFAPNANEIRLK 322
>3f6c_A Positive transcription regulator EVGA; structural genomics,
, PSI-2, protein structure initiative; 1.45A
{Escherichia coli k-12} (A:)
Length = 134
Score = 27.5 bits (61), Expect = 1.6
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 3/48 (6%)
Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMP 132
+ I + L A E V+I D +P
Sbjct: 13 AIAAIRNLLIKNDIEILAELTEGGSAVQRVETLKPDIVII---DVDIP 57
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell
sterol metabolism, beta-alpha-alpha-beta-BETA-alpha
structure, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 94
Score = 26.7 bits (59), Expect = 2.2
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63
++ IP S + +TG IE+A + E
Sbjct: 49 KIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAE 84
>2ww9_B Protein transport protein SSS1; ribonucleoprotein,
transmembrane, phosphoprotein, signal sequence,
membrane, ribosome, cytoplasm; 8.60A {Saccharomyces
cerevisiae} PDB: 2wwa_B (B:)
Length = 80
Score = 26.6 bits (59), Expect = 2.4
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 14 FFIMGFISFIRYVKQMHIP 32
F +G I + +K +HIP
Sbjct: 58 FIAVGIIGYA--IKLIHIP 74
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase,
complex, response regulator, receiver domain,
two-component signal transduction; HET: BFD; 1.96A
{Borrelia burgdorferi} (A:)
Length = 157
Score = 26.4 bits (58), Expect = 3.1
Identities = 12/77 (15%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT--FLELQRIN 142
+ L + G+ ++T + +EA + + + ++ MP+ L I
Sbjct: 48 TVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTL-XITMPKMDGITCLSNIM 106
Query: 143 STVQFIPYPIISHDLEE 159
+ +IS +E
Sbjct: 107 EFDKNARVIMISALGKE 123
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell
sterol metabolism, beta-alpha-alpha-beta-BETA-alpha
structure, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 104
Score = 26.4 bits (58), Expect = 3.4
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63
+H+P S I+ +TG ++RA L ++ E
Sbjct: 49 NIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKE 84
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA
binding protein/DNA complex; 1.70A {Homo sapiens} (A:)
Length = 73
Score = 26.2 bits (58), Expect = 3.7
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63
+++I + I+ L G I +AF + +++ E
Sbjct: 37 RINISEGNCPERIITLAGPTNAIFKAFAXIIDKLEE 72
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma;
ribosome, protein EXIT tunnel, cotranslational protein
translocation, protein conducting channel; 6.48A {Canis
lupus familiaris} (B:)
Length = 68
Score = 25.8 bits (57), Expect = 4.1
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 14 FFIMGFISFIRYVKQMHIP 32
F IMGFI F VK +HIP
Sbjct: 44 FAIMGFIGFF--VKLIHIP 60
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH
domain, hairpin, RNA-binding protein/RNA complex; HET:
5BU; 1.94A {Homo sapiens} PDB: 2ann_A* (A:)
Length = 178
Score = 25.8 bits (55), Expect = 4.6
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 1 MRYFWYGLFVCLIFFIMGFISFIRYVKQM-----HIPDHPSVSA----IVVLTGEPIRIE 51
+ I + ++ + + + P +V ++GEP +
Sbjct: 104 NQVKIIVPNSTAGLIIGKGGATVKAIXEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNR 163
Query: 52 RAFELLENQIGE 63
+A EL+ +I E
Sbjct: 164 KAVELIIQKIQE 175
>1jbq_A Cystathionine beta-synthase, serine sulfhydrase; fold type
II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo
sapiens} (A:138-245)
Length = 108
Score = 25.8 bits (56), Expect = 4.7
Identities = 10/57 (17%), Positives = 17/57 (29%)
Query: 103 TEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEE 159
T GN A A + +IV + L+ + + + P E
Sbjct: 31 TSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPES 87
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA
binding, cytoplasm, DNA-binding, nucleus,
phosphoprotein, ribonucleoprotein, RNA-binding; NMR
{Homo sapiens} (A:1-81)
Length = 81
Score = 25.1 bits (55), Expect = 6.6
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63
+++I + I+ L G I +AF ++ +++ E
Sbjct: 37 RINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 72
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell
sterol metabolism, beta-alpha-alpha-beta-BETA-alpha
structure, structural genomics, NPPSFA; NMR {Homo
sapiens} (A:)
Length = 95
Score = 25.2 bits (55), Expect = 6.7
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 27 KQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63
+H P S S VV+ G +E+A + L + E
Sbjct: 49 VHIHFPVEGSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85
>1saz_A Probable butyrate kinase 2; askha (acetate and sugar
kinases, HSC70, actin) superfamily, acetate kinase,
isobutyrate kinase; HET: ACP; 2.50A {Thermotoga
maritima} (A:1-172,A:333-381)
Length = 221
Score = 25.0 bits (55), Expect = 8.3
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 107 AQEASAWAEKNNFHHVLIVTHDYH 130
++E+ W E+ + + I+ H +H
Sbjct: 196 SEESRRWRERYDSYLDGILRHHHH 219
>1rh5_B Preprotein translocase SECE subunit; protein
translocation, SECY, membrane protein, protein
channels, protein transport; 3.20A {Methanocaldococcus
jannaschii} (B:)
Length = 74
Score = 24.7 bits (54), Expect = 8.7
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 4 FWYGLFVCLI-FFIMGFISFIRYVKQMHIP 32
+ V + ++G I +I +
Sbjct: 34 YLAVAKVTALGISLLGIIGYI--IHVPATY 61
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo
sapiens} (A:)
Length = 71
Score = 24.7 bits (54), Expect = 8.8
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQI 61
+ IP S ++ + G+P +++A L
Sbjct: 37 SVRIPPDSEKSNLIRIEGDPQGVQQAKRELLELA 70
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.328 0.142 0.420
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,596,831
Number of extensions: 68550
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 243
Number of HSP's successfully gapped: 44
Length of query: 207
Length of database: 4,956,049
Length adjustment: 84
Effective length of query: 123
Effective length of database: 2,116,429
Effective search space: 260320767
Effective search space used: 260320767
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)