RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780579|ref|YP_003064992.1| hypothetical protein
CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62]
(207 letters)
>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional
regulator Rv1626 {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 190
Score = 28.7 bits (63), Expect = 0.36
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTF-LELQRINS 143
IR DLAE + GY+ + G+ QEA AE + V++ D MPR ++ +
Sbjct: 15 IRMDLAEMLREEGYEIVGEAGDGQEAVELAELHKPDLVIM---DVKMPRRDGIDAASEIA 71
Query: 144 TVQFIPYPIIS 154
+ + P +++
Sbjct: 72 SKRIAPIVVLT 82
>d1je0a_ c.56.2.1 (A:) 5'-deoxy-5'-methylthioadenosine phosphorylase
{Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Length = 234
Score = 27.8 bits (61), Expect = 0.62
Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 9/139 (6%)
Query: 37 VSAIVVLTGEPIRIERAFELLEN-----QIGEKIFISGVHHSVSKDILLQKIPIRQDLAE 91
V+ V++ G+P R LL+N + + +G ++ + + + I
Sbjct: 11 VAERVLVVGDPGRARLLSTLLQNPKLTNENRGFLVYTGKYN--GETVSIATHGIGGPSIA 68
Query: 92 CCID--IGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIP 149
++ A + N ++++ Y+ F + R N+ V P
Sbjct: 69 IVLEELAMLGANVFIRYGTTGALVPYINLGEYIIVTGASYNQGGLFYQYLRDNACVASTP 128
Query: 150 YPIISHDLEENSSIFKIKI 168
+++ L + S +K
Sbjct: 129 DFELTNKLVTSFSKRNLKY 147
>d2ctea1 d.51.1.1 (A:8-88) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 81
Score = 26.6 bits (59), Expect = 1.8
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGEK 64
++ IP S + +TG IE+A + E+
Sbjct: 42 KIQIPRPDDPSNQIKITGTKEGIEKARHEVLLISAEQ 78
>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella
thermoacetica [TaxId: 1525]}
Length = 549
Score = 25.9 bits (57), Expect = 2.3
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 34 HPSVSAIVVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDILLQKIPIRQDLAECC 93
P + TG+ + A LL + + +I + I R
Sbjct: 114 VPMEDINLHFTGDIHAVTYAHNLLAAMVDNHL-----QQGNVLNIDPRTITWR-----RV 163
Query: 94 IDIGYKAL 101
ID+ +AL
Sbjct: 164 IDLNERAL 171
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas)
[TaxId: 4120]}
Length = 498
Score = 25.9 bits (57), Expect = 2.6
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 19 FISFIRYVKQMHIPDHPSVSAIVVL----TGEPIRIERAFE 55
F F ++VK+MH PS +AI + I I+ E
Sbjct: 433 FELFKKFVKKMHADLDPSPNAISPAVLERSNSAITIDELME 473
>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId:
9606]}
Length = 91
Score = 25.9 bits (57), Expect = 2.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63
+H+P S I+ +TG ++RA L ++ E
Sbjct: 42 NIHVPAPELQSDIIAITGLAANLDRAKAGLLERVKE 77
>d2axya1 d.51.1.1 (A:11-81) Poly(RC)-binding protein 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 71
Score = 25.5 bits (56), Expect = 3.9
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 28 QMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGE 63
+++I + I+ L G I +AF ++ +++ E
Sbjct: 36 RINISEGNCPERIITLAGPTNAIFKAFAMIIDKLEE 71
>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId:
2336]}
Length = 118
Score = 25.3 bits (55), Expect = 3.9
Identities = 14/81 (17%), Positives = 27/81 (33%), Gaps = 10/81 (12%)
Query: 85 IRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHHVLIVTHDYHMPRT-----FLELQ 139
+R L + GY+ N +EA ++ V + D MP E+
Sbjct: 13 MRMMLKDIITKAGYEVAGEATNGREAVEKYKELKPDIVTM---DITMPEMNGIDAIKEIM 69
Query: 140 RINSTVQFIPYPIISHDLEEN 160
+I+ + I + +
Sbjct: 70 KIDPNAKII--VCSAMGQQAM 88
>d2o8ra3 d.136.1.4 (A:318-505) Polyphosphate kinase, PPK
{Porphyromonas gingivalis [TaxId: 837]}
Length = 188
Score = 24.8 bits (54), Expect = 6.3
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 147 FIPYPIISHDLEENSSIFK 165
P P++S LE+ S+ +
Sbjct: 1 LTPEPLLSKHLEQAPSLME 19
>d1we8a_ d.51.1.1 (A:) Tudor and KH domain containing protein,
Tdrkh {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 24.2 bits (52), Expect = 8.4
Identities = 6/52 (11%), Positives = 17/52 (32%), Gaps = 9/52 (17%)
Query: 21 SFIRYVKQM-----HIPDHPSVSA----IVVLTGEPIRIERAFELLENQIGE 63
IR + + + ++ ++G + A L+ ++ E
Sbjct: 35 ETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86
>d1a0ca_ c.1.15.3 (A:) D-xylose isomerase {Clostridium
thermosulfurogenes, also known as Thermoanaerobacter
thermosulfurigenes [TaxId: 33950]}
Length = 437
Score = 24.0 bits (52), Expect = 8.9
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 36 SVSAIVVLTGEPIRIERAFELLENQIGEKIF 66
S+ + + + ELLE+ + + +F
Sbjct: 406 SLEKYALERSQIVNKSGRQELLESILNQYLF 436
>d1x4ma1 d.51.1.1 (A:8-88) Far upstream binding element, FBP
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 81
Score = 24.1 bits (52), Expect = 9.0
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 32 PDHPSVSAIVVLTGEPIRIERAFELLENQIGEK 64
P + + +TG+P ++++A E++ I ++
Sbjct: 48 PQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.142 0.420
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 795,207
Number of extensions: 35982
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 29
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.6 bits)