BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780579|ref|YP_003064992.1| hypothetical protein
CLIBASIA_02330 [Candidatus Liberibacter asiaticus str. psy62]
         (207 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780579|ref|YP_003064992.1| hypothetical protein CLIBASIA_02330 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 207

 Score =  422 bits (1086), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MRYFWYGLFVCLIFFIMGFISFIRYVKQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQ 60
           MRYFWYGLFVCLIFFIMGFISFIRYVKQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQ
Sbjct: 1   MRYFWYGLFVCLIFFIMGFISFIRYVKQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQ 60

Query: 61  IGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFH 120
           IGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFH
Sbjct: 61  IGEKIFISGVHHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFH 120

Query: 121 HVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLKIL 180
           HVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLKIL
Sbjct: 121 HVLIVTHDYHMPRTFLELQRINSTVQFIPYPIISHDLEENSSIFKIKILRVLLIEYLKIL 180

Query: 181 LLSIQLSLSTQTASQFFITLIEEITVK 207
           LLSIQLSLSTQTASQFFITLIEEITVK
Sbjct: 181 LLSIQLSLSTQTASQFFITLIEEITVK 207


>gi|254780187|ref|YP_003064600.1| 30S ribosomal protein S4 [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 206

 Score = 26.9 bits (58), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 5/45 (11%)

Query: 109 EASAWAEKNNFHHVLIVTHDYHMPRTFLELQRINSTVQFIPYPII 153
           EAS  AE++     + V HD +M  TF+   RI S+++ +PYP+I
Sbjct: 155 EASQLAERD-VPEYISVNHD-NMVATFV---RIPSSLKDVPYPVI 194


>gi|255764508|ref|YP_003065363.2| hypothetical protein CLIBASIA_04245 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 242

 Score = 26.9 bits (58), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/78 (24%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 65  IFISGV---HHSVSKDILLQKIPIRQDLAECCIDIGYKALNTEGNAQEASAWAEKNNFHH 121
           I ISG     H +++ I+     +   +    I +  ++L+T  NAQ +S+  +     +
Sbjct: 116 IIISGGDPQKHGLAESIVYNNKLLESGVERDDIKLETQSLDTFQNAQFSSSMIKNMQGKN 175

Query: 122 VLIVTHDYHMPRTFLELQ 139
           +++V+  YH+ R+ L  Q
Sbjct: 176 IILVSSAYHLKRSQLYFQ 193


>gi|254780528|ref|YP_003064941.1| chemotaxis protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 396

 Score = 26.9 bits (58), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 6/38 (15%)

Query: 46  EPIRIERAFELLENQIGEKIF------ISGVHHSVSKD 77
           E I +    E+ +N++GE+ F      ++  HHS+ KD
Sbjct: 182 EEIALRNLLEITQNEVGERAFGYIRAYVTQFHHSIYKD 219


>gi|254780138|ref|YP_003064551.1| ABC transporter [Candidatus Liberibacter asiaticus str. psy62]
          Length = 373

 Score = 23.9 bits (50), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 18  GFI-SFIRYVKQMHIPDHPSVSAIVVLTGEPIRIERAFELLENQIGEKIF 66
           GF+ S IR +  + +   P V  I  +TG  I  + AF+L  +Q G +IF
Sbjct: 151 GFLLSLIRQMYYVGVSGVPVVILISFVTGAVIAQQGAFQL--SQFGAEIF 198


>gi|254780893|ref|YP_003065306.1| two component response regulator [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 236

 Score = 23.1 bits (48), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 169 LRVLLIEYLKILLLSIQLSLSTQTASQFFITLIEE 203
           +R+LLIE  K L  SI+L L ++  + +   L E+
Sbjct: 1   MRILLIEDDKALAHSIELMLKSENFNVYVTDLGED 35


>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score = 22.7 bits (47), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 111 SAWAEKNNFHH 121
           +AWAE NNF H
Sbjct: 194 AAWAEHNNFLH 204


>gi|254781038|ref|YP_003065451.1| putative DNA-binding/iron metalloprotein/AP endonuclease
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 363

 Score = 22.7 bits (47), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)

Query: 22  FIRYVKQMHIPDHPSVSAI--VVLTGEPIRIERAFELLENQIGEKIFISGVHHSVSKDIL 79
           F +  K + +P +P    I    L G+  R +    L++  + +  F SG+  SV K I 
Sbjct: 173 FDKIAKSLGLP-YPGGVEIEKAALMGDGKRFKFPCPLVQGTLCDFSF-SGLKTSVQKTIC 230

Query: 80  LQKIPIRQDLAECC 93
              +  +QD+A+ C
Sbjct: 231 AFDVLEKQDIADIC 244


>gi|254780721|ref|YP_003065134.1| pilus component protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 329

 Score = 22.7 bits (47), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 8   LFVCLIFFIMGFISFIRYVKQMHIPDHPSVSAIVVL 43
           L V +IF I+G I    Y K +  P    V A++++
Sbjct: 121 LVVPIIFLILGIIWIFGYDKLLEYPFQLRVGAVILI 156


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.328    0.142    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,377
Number of Sequences: 1233
Number of extensions: 5264
Number of successful extensions: 19
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 10
length of query: 207
length of database: 328,796
effective HSP length: 70
effective length of query: 137
effective length of database: 242,486
effective search space: 33220582
effective search space used: 33220582
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 36 (18.5 bits)