Query gi|254780581|ref|YP_003064994.1| hypothetical protein CLIBASIA_02340 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 33 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Tue May 31 18:53:29 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780581.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3ffy_A Putative tetrapyrrole ( 62.0 2.4 9.9E-05 22.4 1.3 14 3-16 19-32 (115) 2 1wyz_A Putative S-adenosylmeth 45.7 5.7 0.00024 20.5 1.1 14 3-16 137-150 (242) 3 3nct_A Protein PSIB; DNA bindi 16.2 24 0.001 17.4 -0.0 12 2-13 52-63 (144) 4 2wax_B Enhancer of mRNA-decapp 9.0 22 0.00093 17.6 -2.1 14 20-33 16-29 (44) 5 2k47_A Phosphoprotein, P prote 8.4 1.1E+02 0.0046 14.2 1.2 19 7-25 11-29 (79) 6 3hhw_A Phosphoprotein; protein 6.2 1.1E+02 0.0048 14.1 0.5 16 7-22 27-42 (87) 7 1f7d_A POL polyprotein; eight 6.0 1.3E+02 0.0055 13.8 0.7 10 8-17 7-16 (136) 8 2nu8_A Succinyl-COA ligase [AD 4.4 2.4E+02 0.0099 12.5 1.1 15 2-16 30-45 (288) 9 2ftx_B Hypothetical 24.6 kDa p 3.7 2.8E+02 0.012 12.1 1.5 20 8-27 31-50 (64) 10 1mmc_A AC-AMP2, antimicrobial 3.6 1.4E+02 0.006 13.6 -0.5 13 3-15 17-29 (30) No 1 >3ffy_A Putative tetrapyrrole (corrin/porphyrin) methylase; structural genomics, APC62130.1, methyltransferase, PSI-2; 2.00A {Bacteroides fragilis nctc 9343} PDB: 3fq6_A Probab=62.03 E-value=2.4 Score=22.40 Aligned_cols=14 Identities=50% Similarity=1.032 Sum_probs=11.1 Q ss_pred CEEEEECCCCCCCC Q ss_conf 30221105544574 Q gi|254780581|r 3 GFNFCGFLPKRAGD 16 (33) Q Consensus 3 gfnfcgflpkragd 16 (33) .|.|+|||||..+. T Consensus 19 ~F~F~GFLPkk~~r 32 (115) T 3ffy_A 19 KFCFEGFLPQKKGR 32 (115) T ss_dssp SEEEEESCCSSTTH T ss_pred CEEEEEECCCCCCH T ss_conf 71998767874222 No 2 >1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.90.1.1 Probab=45.68 E-value=5.7 Score=20.49 Aligned_cols=14 Identities=43% Similarity=1.047 Sum_probs=11.2 Q ss_pred CEEEEECCCCCCCC Q ss_conf 30221105544574 Q gi|254780581|r 3 GFNFCGFLPKRAGD 16 (33) Q Consensus 3 gfnfcgflpkragd 16 (33) .|.|.||||+..+. T Consensus 137 ~F~F~GFLP~k~~~ 150 (242) T 1wyz_A 137 SFAFHGYLPIEPGE 150 (242) T ss_dssp SEEEEEECCSSTTH T ss_pred CEEEEEECCCCHHH T ss_conf 53899712686788 No 3 >3nct_A Protein PSIB; DNA binding protein, chaperone; 2.20A {Escherichia coli} Probab=16.21 E-value=24 Score=17.39 Aligned_cols=12 Identities=50% Similarity=1.124 Sum_probs=9.4 Q ss_pred CCEEEEECCCCC Q ss_conf 330221105544 Q gi|254780581|r 2 YGFNFCGFLPKR 13 (33) Q Consensus 2 ygfnfcgflpkr 13 (33) |+-.||||.|-. T Consensus 52 y~sEFgGffPVq 63 (144) T 3nct_A 52 YGSEFGGFFPVQ 63 (144) T ss_dssp SSSTTCSCSSSE T ss_pred HHCCCCCEEEEE T ss_conf 221036723379 No 4 >2wax_B Enhancer of mRNA-decapping protein 3; DEAD-box protein, nucleotide-binding, RCK, miRNA, P-bodies, helicase, RNA-binding, proto-oncogene; HET: CXS; 2.30A {Homo sapiens} PDB: 2way_B Probab=9.02 E-value=22 Score=17.59 Aligned_cols=14 Identities=50% Similarity=0.629 Sum_probs=9.8 Q ss_pred EEEECCCEEEEEEC Q ss_conf 99806740457859 Q gi|254780581|r 20 LAVENDFEWNLMLF 33 (33) Q Consensus 20 lavendfewnlmlf 33 (33) +.-+-|||-||-|| T Consensus 16 ~~~DFDFE~NLALF 29 (44) T 2wax_B 16 PDTDFDFEGNLALF 29 (44) T ss_dssp CSSCCCHHHHHTTC T ss_pred CCCCCCCCHHHHHH T ss_conf 23345720308886 No 5 >2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus} Probab=8.42 E-value=1.1e+02 Score=14.17 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=13.1 Q ss_pred EECCCCCCCCEEEEEEECC Q ss_conf 1105544574368998067 Q gi|254780581|r 7 CGFLPKRAGDLSMLAVEND 25 (33) Q Consensus 7 cgflpkragdlsmlavend 25 (33) --|.|||||+-.|..--.| T Consensus 11 vqf~~kKagv~pL~vtL~e 29 (79) T 2k47_A 11 MTFQPKKASLQPLTISLDE 29 (79) T ss_dssp EEEEESSSSSCCEEEESGG T ss_pred EEECCCCCCCCCCEEEHHH T ss_conf 7715333699983667999 No 6 >3hhw_A Phosphoprotein; protein complex, template, replication, negative strand RNA virus, chaperone, cytoplasm, phosphoprotein; HET: TAR; 2.70A {Vesicular stomatitis indiana virus} PDB: 3hhz_A Probab=6.23 E-value=1.1e+02 Score=14.08 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=11.7 Q ss_pred EECCCCCCCCEEEEEE Q ss_conf 1105544574368998 Q gi|254780581|r 7 CGFLPKRAGDLSMLAV 22 (33) Q Consensus 7 cgflpkragdlsmlav 22 (33) --|.|||||+-.|-.- T Consensus 27 vqf~~kkagv~pltvt 42 (87) T 3hhw_A 27 MTFQPKKASLQPLTIS 42 (87) T ss_dssp EEECBSSSSCCCEEEE T ss_pred EEECCCCCCCCCCEEE T ss_conf 7722332688772666 No 7 >1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A Probab=6.05 E-value=1.3e+02 Score=13.78 Aligned_cols=10 Identities=50% Similarity=0.753 Sum_probs=6.8 Q ss_pred ECCCCCCCCE Q ss_conf 1055445743 Q gi|254780581|r 8 GFLPKRAGDL 17 (33) Q Consensus 8 gflpkragdl 17 (33) +.||||++|- T Consensus 7 ailPkr~~dA 16 (136) T 1f7d_A 7 GILDKRSEDA 16 (136) T ss_dssp SBCCCCTTCS T ss_pred CCCCCCCCCC T ss_conf 4488989861 No 8 >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, rossmann fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* Probab=4.44 E-value=2.4e+02 Score=12.50 Aligned_cols=15 Identities=33% Similarity=0.762 Sum_probs=10.6 Q ss_pred CCEEE-EECCCCCCCC Q ss_conf 33022-1105544574 Q gi|254780581|r 2 YGFNF-CGFLPKRAGD 16 (33) Q Consensus 2 ygfnf-cgflpkragd 16 (33) ||+|. +|--|+|+|+ T Consensus 30 ygt~vv~gVnP~kgG~ 45 (288) T 2nu8_A 30 YGTKMVGGVTPGKGGT 45 (288) T ss_dssp HTCEEEEEECTTCTTC T ss_pred HCCCEEEEECCCCCCC T ss_conf 5896799867997863 No 9 >2ftx_B Hypothetical 24.6 kDa protein in ILV2-ADE17 intergenic region; alpha-beta, complex, coiled-coil, structural protein, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.300.1.2 Probab=3.68 E-value=2.8e+02 Score=12.09 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=14.8 Q ss_pred ECCCCCCCCEEEEEEECCCE Q ss_conf 10554457436899806740 Q gi|254780581|r 8 GFLPKRAGDLSMLAVENDFE 27 (33) Q Consensus 8 gflpkragdlsmlavendfe 27 (33) =.--++.|+.+.+.+++.|. T Consensus 31 iI~n~~~g~v~vl~id~k~S 50 (64) T 2ftx_B 31 LINRKNDGNIDILPLDNNLS 50 (64) T ss_dssp EECSSCSSCCEEEECCTTSC T ss_pred EEEECCCCCEEEEECCCCCC T ss_conf 99928989677897687612 No 10 >1mmc_A AC-AMP2, antimicrobial peptide 2; antifungal antimicrobial, chitin-binding; NMR {Amaranthus caudatus} SCOP: g.3.1.2 PDB: 1zuv_A 1zwu_A* 1znt_A* Probab=3.63 E-value=1.4e+02 Score=13.56 Aligned_cols=13 Identities=46% Similarity=0.973 Sum_probs=9.1 Q ss_pred CEEEEECCCCCCC Q ss_conf 3022110554457 Q gi|254780581|r 3 GFNFCGFLPKRAG 15 (33) Q Consensus 3 gfnfcgflpkrag 15 (33) .|.+||--||-.| T Consensus 17 qfgycgkgpkycg 29 (30) T 1mmc_A 17 QFGYCGKGPKYCG 29 (30) T ss_dssp TTSCEESSHHHHC T ss_pred HCCCCCCCCCCCC T ss_conf 4170467853447 Done!