Query gi|254780581|ref|YP_003064994.1| hypothetical protein CLIBASIA_02340 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 33
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 08:56:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780581.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2v9va1 a.4.5.35 (A:377-437) C 11.8 41 0.003 15.1 1.3 14 13-26 43-56 (61)
2 d1ig0a1 b.82.6.1 (A:224-319) T 10.9 64 0.0047 14.1 2.5 24 6-31 27-50 (96)
3 d1ffvc1 d.87.2.1 (C:178-287) C 7.2 90 0.0065 13.4 1.6 20 2-22 2-21 (110)
4 d1f7da_ b.85.4.1 (A:) Deoxyuri 6.3 72 0.0052 13.9 0.7 11 7-17 6-16 (118)
5 d2ftxb1 d.300.1.2 (B:155-213) 4.3 1.5E+02 0.011 12.4 1.5 21 7-27 25-45 (59)
6 d1mmca_ g.3.1.2 (A:) Antimicro 3.8 79 0.0058 13.7 -0.5 13 3-15 17-29 (30)
7 d1ig3a1 b.82.6.1 (A:179-263) T 2.9 2E+02 0.015 11.7 1.8 24 5-30 23-46 (85)
8 d1n62c1 d.87.2.1 (C:178-286) C 2.8 2.1E+02 0.015 11.6 1.6 20 2-22 2-21 (109)
9 d2coca1 b.55.1.1 (A:8-106) FYV 2.3 2E+02 0.014 11.7 0.2 10 6-15 3-12 (99)
10 d1twla_ b.40.5.1 (A:) Inorgani 2.2 2.5E+02 0.018 11.2 1.2 14 2-16 51-64 (173)
No 1
>d2v9va1 a.4.5.35 (A:377-437) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=11.84 E-value=41 Score=15.06 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=12.2
Q ss_pred CCCCEEEEEEECCC
Q ss_conf 45743689980674
Q gi|254780581|r 13 RAGDLSMLAVENDF 26 (33)
Q Consensus 13 ragdlsmlavendf 26 (33)
.||....|.||||.
T Consensus 43 aagqvtllrvendl 56 (61)
T d2v9va1 43 AAGQVTLLRVENDL 56 (61)
T ss_dssp HTTCEEEEEETTEE
T ss_pred HCCCEEEEEECCCC
T ss_conf 55753788860540
No 2
>d1ig0a1 b.82.6.1 (A:224-319) Thiamin pyrophosphokinase, substrate-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.88 E-value=64 Score=14.12 Aligned_cols=24 Identities=21% Similarity=0.696 Sum_probs=15.8
Q ss_pred EEECCCCCCCCEEEEEEECCCEEEEE
Q ss_conf 21105544574368998067404578
Q gi|254780581|r 6 FCGFLPKRAGDLSMLAVENDFEWNLM 31 (33)
Q Consensus 6 fcgflpkragdlsmlavendfewnlm 31 (33)
.||.+|-..- +...--..++|||-
T Consensus 27 ~CGLiP~g~p--~~~~tT~GLkWnl~ 50 (96)
T d1ig0a1 27 NCGLLPIGEA--TLVKETRGLKWDVK 50 (96)
T ss_dssp EEEEECTTSC--EEEEEEESBSEEEE
T ss_pred CEEEEECCCC--CCCEECCCEEEECC
T ss_conf 4899977887--53078727017888
No 3
>d1ffvc1 d.87.2.1 (C:178-287) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=7.21 E-value=90 Score=13.40 Aligned_cols=20 Identities=15% Similarity=0.448 Sum_probs=15.4
Q ss_pred CCEEEEECCCCCCCCEEEEEE
Q ss_conf 330221105544574368998
Q gi|254780581|r 2 YGFNFCGFLPKRAGDLSMLAV 22 (33)
Q Consensus 2 ygfnfcgflpkragdlsmlav 22 (33)
+||.|--+ +.|++|.+++.+
T Consensus 2 ~g~~y~k~-~Rr~~d~a~v~~ 21 (110)
T d1ffvc1 2 TGWAYEKL-KRKTGDWATAGC 21 (110)
T ss_dssp CEEEEEEE-CSSTTSCCSEEE
T ss_pred CCEEEEEE-CCCCHHHHHHHH
T ss_conf 96568992-787303768731
No 4
>d1f7da_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Feline immunodeficiency virus [TaxId: 11673]}
Probab=6.28 E-value=72 Score=13.88 Aligned_cols=11 Identities=45% Similarity=0.588 Sum_probs=7.5
Q ss_pred EECCCCCCCCE
Q ss_conf 11055445743
Q gi|254780581|r 7 CGFLPKRAGDL 17 (33)
Q Consensus 7 cgflpkragdl 17 (33)
-+.+|||++|-
T Consensus 6 ~~ilP~r~~dA 16 (118)
T d1f7da_ 6 DGILDKRSEDA 16 (118)
T ss_dssp SSBCCCCTTCS
T ss_pred CCCCCCCCCCC
T ss_conf 85488989951
No 5
>d2ftxb1 d.300.1.2 (B:155-213) Kinetochore protein Spc24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.27 E-value=1.5e+02 Score=12.36 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=15.7
Q ss_pred EECCCCCCCCEEEEEEECCCE
Q ss_conf 110554457436899806740
Q gi|254780581|r 7 CGFLPKRAGDLSMLAVENDFE 27 (33)
Q Consensus 7 cgflpkragdlsmlavendfe 27 (33)
|=.--++.||.+.+.+++.|.
T Consensus 25 ~iI~n~~~g~v~vv~id~k~S 45 (59)
T d2ftxb1 25 VLINRKNDGNIDILPLDNNLS 45 (59)
T ss_dssp EEECSSCSSCCEEEECCTTSC
T ss_pred EEEEECCCCCEEEEECCCCCC
T ss_conf 999808989577997687612
No 6
>d1mmca_ g.3.1.2 (A:) Antimicrobial peptide 2, AC-AMP2 {Tassel (Amaranthus caudatus) [TaxId: 3567]}
Probab=3.76 E-value=79 Score=13.66 Aligned_cols=13 Identities=46% Similarity=0.973 Sum_probs=9.2
Q ss_pred CEEEEECCCCCCC
Q ss_conf 3022110554457
Q gi|254780581|r 3 GFNFCGFLPKRAG 15 (33)
Q Consensus 3 gfnfcgflpkrag 15 (33)
.|.+||--||-.|
T Consensus 17 qfgycg~gpkycg 29 (30)
T d1mmca_ 17 QFGYCGKGPKYCG 29 (30)
T ss_dssp TTSCEESSHHHHC
T ss_pred HCCCCCCCCCCCC
T ss_conf 4270467853447
No 7
>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.87 E-value=2e+02 Score=11.65 Aligned_cols=24 Identities=25% Similarity=0.796 Sum_probs=12.2
Q ss_pred EEEECCCCCCCCEEEEEEECCCEEEE
Q ss_conf 22110554457436899806740457
Q gi|254780581|r 5 NFCGFLPKRAGDLSMLAVENDFEWNL 30 (33)
Q Consensus 5 nfcgflpkragdlsmlavendfewnl 30 (33)
.+|+++|-.. +..-+ -...+.|||
T Consensus 23 ~~~sliPl~~-~~~~v-t~~Glky~L 46 (85)
T d1ig3a1 23 SWCGLIPVGQ-PCNQV-TTTGLKWNL 46 (85)
T ss_dssp EEEEEECCSS-CEEEE-EEESBSSCC
T ss_pred CEEEEEECCC-CCEEE-EEECCEEEC
T ss_conf 8899998778-60059-972789837
No 8
>d1n62c1 d.87.2.1 (C:178-286) Carbon monoxide (CO) dehydrogenase flavoprotein, C-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}
Probab=2.78 E-value=2.1e+02 Score=11.60 Aligned_cols=20 Identities=20% Similarity=0.489 Sum_probs=14.7
Q ss_pred CCEEEEECCCCCCCCEEEEEE
Q ss_conf 330221105544574368998
Q gi|254780581|r 2 YGFNFCGFLPKRAGDLSMLAV 22 (33)
Q Consensus 2 ygfnfcgflpkragdlsmlav 22 (33)
.||.|--+ ..|++|.++..+
T Consensus 2 ~g~ay~k~-~Rr~~d~a~v~v 21 (109)
T d1n62c1 2 HGYAYEKL-KRKIGDYATAAA 21 (109)
T ss_dssp CEEEEEEE-CSSTTCCCSEEE
T ss_pred CCEEEEEE-CCCCCHHHHHHH
T ss_conf 96588996-887302778703
No 9
>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.30 E-value=2e+02 Score=11.69 Aligned_cols=10 Identities=30% Similarity=0.584 Sum_probs=5.6
Q ss_pred EEECCCCCCC
Q ss_conf 2110554457
Q gi|254780581|r 6 FCGFLPKRAG 15 (33)
Q Consensus 6 fcgflpkrag 15 (33)
.||||-++.+
T Consensus 3 ~~G~L~~~~~ 12 (99)
T d2coca1 3 LCGPLRLSES 12 (99)
T ss_dssp SEEEEEEESS
T ss_pred EEEEEECCCC
T ss_conf 6798881279
No 10
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus furiosus [TaxId: 2261]}
Probab=2.19 E-value=2.5e+02 Score=11.18 Aligned_cols=14 Identities=21% Similarity=0.695 Sum_probs=0.0
Q ss_pred CCEEEEECCCCCCCC
Q ss_conf 330221105544574
Q gi|254780581|r 2 YGFNFCGFLPKRAGD 16 (33)
Q Consensus 2 ygfnfcgflpkragd 16 (33)
|-||+ ||+|..-++
T Consensus 51 yP~nY-GfiP~T~~~ 64 (173)
T d1twla_ 51 YPVDY-GIIPRTWYE 64 (173)
T ss_dssp CSSEE-EECTTCCBC
T ss_pred CCCCC-CEEECCCCC
T ss_conf 78665-612021347
Done!