BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780581|ref|YP_003064994.1| hypothetical protein
CLIBASIA_02340 [Candidatus Liberibacter asiaticus str. psy62]
         (33 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780581|ref|YP_003064994.1| hypothetical protein CLIBASIA_02340 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 33

 Score = 70.1 bits (170), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MYGFNFCGFLPKRAGDLSMLAVENDFEWNLMLF 33
          MYGFNFCGFLPKRAGDLSMLAVENDFEWNLMLF
Sbjct: 1  MYGFNFCGFLPKRAGDLSMLAVENDFEWNLMLF 33


>gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 280

 Score = 23.9 bits (50), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 3   GFNFCGFLPKRAGDLSMLAVENDFE 27
           G NF GFL + A +  + A + DFE
Sbjct: 131 GINFLGFLVETAAEYLLPAKDWDFE 155


>gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 348

 Score = 21.6 bits (44), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 12/15 (80%)

Query: 6   FCGFLPKRAGDLSML 20
           FC +L + AGDL+++
Sbjct: 251 FCEYLGRVAGDLALI 265


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.333    0.148    0.506 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,807
Number of Sequences: 1233
Number of extensions: 326
Number of successful extensions: 3
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 33
length of database: 328,796
effective HSP length: 7
effective length of query: 26
effective length of database: 320,165
effective search space:  8324290
effective search space used:  8324290
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 31 (16.5 bits)