HHsearch alignment for GI: 254780582 and conserved domain: COG0030

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis].

Probab=95.63  E-value=0.053  Score=31.48  Aligned_cols=87  Identities=10%  Similarity=0.019  Sum_probs=54.7

Q ss_pred             CHHHHHHH--HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH-HCCCCEEEEEECHHHHHHHHHCCC----CCEEEECH
Q ss_conf             88989999--999999997501048975999653881113553-123874887305899983231168----62365333
Q gi|254780582|r   14 SFLGKCTT--DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH-GKVERTLAFMPAGQGATNWPDQYF----SSTALVSE   86 (242)
Q Consensus        14 s~~G~~~~--~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~   86 (242)
T Consensus         6 K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da   85 (259)
T COG0030           6 KRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA   85 (259)
T ss_pred             CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf             77664541478799999985578999869997898778899999606957999968899999997506566559994724


Q ss_pred             HHCCCCCC-CCCCHH
Q ss_conf             65677547-202002
Q gi|254780582|r   87 GNLPLADS-SVDCVL  100 (242)
Q Consensus        87 ~~LPf~~~-sfD~Vi  100 (242)
T Consensus        86 Lk~d~~~l~~~~~vV  100 (259)
T COG0030          86 LKFDFPSLAQPYKVV  100 (259)
T ss_pred             HCCCCHHHCCCCEEE
T ss_conf             247513515788899