HHsearch alignment for GI: 254780582 and conserved domain: COG0293

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=95.43  E-value=0.14  Score=29.08  Aligned_cols=95  Identities=21%  Similarity=0.050  Sum_probs=54.8

Q ss_pred             CCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCC--------CCCCCCCCHHHHH
Q ss_conf             897599965388111355312----3874887305899983231168623653336567--------7547202002202
Q gi|254780582|r   36 TGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP--------LADSSVDCVLMVH  103 (242)
Q Consensus        36 ~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LP--------f~~~sfD~Vi~~h  103 (242)
T Consensus        45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~-----~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~  119 (205)
T COG0293          45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM  119 (205)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCC-----CCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECC
T ss_conf             89879983879984999999973888848999775455-----6789468841324843799999870778766687258


Q ss_pred             --------HHHHH---CCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             --------47752---299999999998469998899973387
Q gi|254780582|r  104 --------YLEFA---EDPFLMLHEIWRVLTSGGRMIVVVPNK  135 (242)
Q Consensus       104 --------~LE~~---~dp~~~L~Ei~RvLkPgG~lii~~~n~  135 (242)
T Consensus       120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg  162 (205)
T COG0293         120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG  162 (205)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEC
T ss_conf             8776787220088999999999999987257898399999757