HHsearch alignment for GI: 254780582 and conserved domain: COG0293
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=95.43 E-value=0.14 Score=29.08 Aligned_cols=95 Identities=21% Similarity=0.050 Sum_probs=54.8
Q ss_pred CCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCC--------CCCCCCCCHHHHH
Q ss_conf 897599965388111355312----3874887305899983231168623653336567--------7547202002202
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP--------LADSSVDCVLMVH 103 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LP--------f~~~sfD~Vi~~h 103 (242)
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~-----~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCC-----CCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECC
T ss_conf 89879983879984999999973888848999775455-----6789468841324843799999870778766687258
Q ss_pred --------HHHHH---CCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf --------47752---299999999998469998899973387
Q gi|254780582|r 104 --------YLEFA---EDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 104 --------~LE~~---~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEC
T ss_conf 8776787220088999999999999987257898399999757