HHsearch alignment for GI: 254780582 and conserved domain: COG1352

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].
Probab=97.16  E-value=0.0031  Score=38.55  Aligned_cols=96  Identities=11%  Similarity=0.041  Sum_probs=57.8

Q ss_pred             CCCEEEEECCCCCH----HHHHHHC--------CCCEEEEEECHHHHHHHHHCCCC-C----------------------
Q ss_conf             89759996538811----1355312--------38748873058999832311686-2----------------------
Q gi|254780582|r   36 TGCRLLGLGYAIPF----FSCFHGK--------VERTLAFMPAGQGATNWPDQYFS-S----------------------   80 (242)
Q Consensus        36 ~g~~vLdiGcg~g~----~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~----------------------   80 (242)
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~  175 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS  175 (268)
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCHHHHHHHEEECCCCC
T ss_conf             85399966768995589999999987332258743899997999999998628887667654499899963376469984


Q ss_pred             -EE--------EECHHHC---CCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHCCCCCEEEEE
Q ss_conf             -36--------5333656---7754720200220247752299--99999999846999889997
Q gi|254780582|r   81 -TA--------LVSEGNL---PLADSSVDCVLMVHYLEFAEDP--FLMLHEIWRVLTSGGRMIVV  131 (242)
Q Consensus        81 -~~--------~~d~~~L---Pf~~~sfD~Vi~~h~LE~~~dp--~~~L~Ei~RvLkPgG~lii~  131 (242)
T Consensus       176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG  240 (268)
T COG1352         176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG  240 (268)
T ss_pred             EEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf             79876876243775357888754358988899841488637899999999999974899789982