HHsearch alignment for GI: 254780582 and conserved domain: COG1352
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].
Probab=97.16 E-value=0.0031 Score=38.55 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=57.8
Q ss_pred CCCEEEEECCCCCH----HHHHHHC--------CCCEEEEEECHHHHHHHHHCCCC-C----------------------
Q ss_conf 89759996538811----1355312--------38748873058999832311686-2----------------------
Q gi|254780582|r 36 TGCRLLGLGYAIPF----FSCFHGK--------VERTLAFMPAGQGATNWPDQYFS-S---------------------- 80 (242)
Q Consensus 36 ~g~~vLdiGcg~g~----~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~---------------------- 80 (242)
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCHHHHHHHEEECCCCC
T ss_conf 85399966768995589999999987332258743899997999999998628887667654499899963376469984
Q ss_pred -EE--------EECHHHC---CCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHCCCCCEEEEE
Q ss_conf -36--------5333656---7754720200220247752299--99999999846999889997
Q gi|254780582|r 81 -TA--------LVSEGNL---PLADSSVDCVLMVHYLEFAEDP--FLMLHEIWRVLTSGGRMIVV 131 (242)
Q Consensus 81 -~~--------~~d~~~L---Pf~~~sfD~Vi~~h~LE~~~dp--~~~L~Ei~RvLkPgG~lii~ 131 (242)
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 79876876243775357888754358988899841488637899999999999974899789982