HHsearch alignment for GI: 254780582 and conserved domain: COG2264
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].
Probab=98.70 E-value=7.9e-08 Score=64.75 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCCHHHHHHHC--CCCEEEEEECHHHHHHHHHCCCCCEEE----EC-HHHCCCCC-CCCCCHHHHHHHHH
Q ss_conf 897599965388111355312--387488730589998323116862365----33-36567754-72020022024775
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGK--VERTLAFMPAGQGATNWPDQYFSSTAL----VS-EGNLPLAD-SSVDCVLMVHYLEF 107 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d-~~~LPf~~-~sfD~Vi~~h~LE~ 107 (242)
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~v 241 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEV 241 (300)
T ss_pred CCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCCCCCCCEEEEHHHHHH
T ss_conf 89879982678159999999819866899718889999999999976996022003456300013686568986052789
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 2299999999998469998899973387740345653276656557888999999962876212578
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
T Consensus 242 ---l~~La~~~~~~lkpgg~lIlSGIl~-------~----------q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 242 ---LVELAPDIKRLLKPGGRLILSGILE-------D----------QAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred ---HHHHHHHHHHHCCCCCEEEEEEECH-------H----------HHHHHHHHHHHCCCEEEEEEE
T ss_conf ---9999999998708893699986207-------5----------899999999858976868970