HHsearch alignment for GI: 254780582 and conserved domain: PRK00517
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed.
Probab=98.64 E-value=1.5e-07 Score=63.20 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=83.1
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHH--CCCCEEEEEECHHHHHHHHHC---CCCC-EEEECHHHCCCCCCCCCCH
Q ss_conf 999975010489759996538811135531--238748873058999832311---6862-3653336567754720200
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHG--KVERTLAFMPAGQGATNWPDQ---YFSS-TALVSEGNLPLADSSVDCV 99 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~d~~~LPf~~~sfD~V 99 (242)
T Consensus 154 ~~l~~~--~~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~~~~~~~~~Dlv 231 (298)
T PRK00517 154 EWLEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDRLELYLPEDQPLEGKADVI 231 (298)
T ss_pred HHHHHH--CCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEE
T ss_conf 999843--546886887157706999999974998499998989999999999998699842689616643446764689
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 220247752299999999998469998899973387740345653276656557888999999962876212578
Q gi|254780582|r 100 LMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 100 i~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
T Consensus 232 vANIla~v---l~~l~~~~~~~l~~~G~lilSGIl~-----------------~~~~~v~~~~~~~g~~~~~~~~ 286 (298)
T PRK00517 232 VANILANP---LIELAPDLAALVKPGGRLILSGILA-----------------EQADEVLEAYEDAGFTLDEVAE 286 (298)
T ss_pred EEECCHHH---HHHHHHHHHHHHCCCCEEEEECCCH-----------------HHHHHHHHHHHHCCCEEEEEEE
T ss_conf 97315899---9999999999738997999927848-----------------8999999999987998978860