HHsearch alignment for GI: 254780582 and conserved domain: PRK04266

>PRK04266 fibrillarin; Provisional.
Probab=96.48  E-value=0.0083  Score=36.10  Aligned_cols=150  Identities=17%  Similarity=0.115  Sum_probs=89.4

Q ss_pred             HHHHHH--HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHH---HH-HC
Q ss_conf             899996--128898999999999999750104897599965388111355312---3874887305899983---23-11
Q gi|254780582|r    6 VELRQF--YSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATN---WP-DQ   76 (242)
Q Consensus         6 ~~l~~w--Y~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~---~~-~~   76 (242)
T Consensus        45 ~EyR~W~P~RSKLaAail~----g~~-~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R  119 (226)
T PRK04266         45 EEYREWNPRRSKLAAAILN----GLK-NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEER  119 (226)
T ss_pred             EEEEEECCCCCHHHHHHHC----CCC-CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC
T ss_conf             4866578872199999976----975-56758998799954777984888987517964999982707789999998508


Q ss_pred             CCCCEEEECH---HHC-CCCCCCCCCHHHHHHHHHHCCHHH---HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCC
Q ss_conf             6862365333---656-775472020022024775229999---999999846999889997338774034565327665
Q gi|254780582|r   77 YFSSTALVSE---GNL-PLADSSVDCVLMVHYLEFAEDPFL---MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS  149 (242)
Q Consensus        77 ~~~~~~~~d~---~~L-Pf~~~sfD~Vi~~h~LE~~~dp~~---~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~  149 (242)
T Consensus       120 ~NivPIl~DAr~P~~Y~~~v-~~VD~i~qD-----vAQ~dQa~I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~-----  188 (226)
T PRK04266        120 KNIIPILGDARKPEEYAHLV-EKVDVIYQD-----VAQPNQAEIAADNADIFLKPGGYLMLAIKARSIDVTKDPK-----  188 (226)
T ss_pred             CCCEEEECCCCCHHHHHHHC-CCCCEEEEE-----CCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHH-----
T ss_conf             99625754678845644205-656589960-----6774289999999998601598899999742356468989-----


Q ss_pred             CCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf             6557888999999962876212578
Q gi|254780582|r  150 GQPYSWYQMISLLREANFTLSITSR  174 (242)
Q Consensus       150 ~r~~~~~~l~~~l~~~gf~~~~~~~  174 (242)
T Consensus       189 ---~vf~~~~~~L~~~~~~~~e~i~  210 (226)
T PRK04266        189 ---EIFKEEIKKLEEGGFEILEVVD  210 (226)
T ss_pred             ---HHHHHHHHHHHHCCCCEEEEEE
T ss_conf             ---9999999999876996689981