HHsearch alignment for GI: 254780582 and conserved domain: PRK09489
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional.
Probab=98.55 E-value=7.8e-07 Score=59.08 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=66.7
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHC---C--CCCEEEECHHHCCCCCCCC
Q ss_conf 9999975010489759996538811135531238---748873058999832311---6--8623653336567754720
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQ---Y--FSSTALVSEGNLPLADSSV 96 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~--~~~~~~~d~~~LPf~~~sf 96 (242)
T Consensus 185 S~lLL~~l~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~--~~~v~~~f 262 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLEGEVFASNV--FSEIKGRF 262 (342)
T ss_pred HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCC
T ss_conf 9999973783248847860678179999999869997699996889999999998998098868997564--45655678
Q ss_pred CCHHHHHHHHH----H-CCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 20022024775----2-2999999999984699988999733877
Q gi|254780582|r 97 DCVLMVHYLEF----A-EDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 97 D~Vi~~h~LE~----~-~dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
T Consensus 263 D~IvsNPPFH~G~~~~~~i~~~fi~~A~~~L~~gG~L~iVA-Nr~ 306 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA-NAF 306 (342)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CCC
T ss_conf 98996885215752658999999999998612498899998-189