HHsearch alignment for GI: 254780582 and conserved domain: PRK10611
>PRK10611 chemotaxis methyltransferase CheR; Provisional.
Probab=95.63 E-value=0.0073 Score=36.40 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=60.0
Q ss_pred CCCEEEEECCCCCH----HHHHHHC-------CCCEEEEEECHHHHHHHHHCCC-------------------------C
Q ss_conf 89759996538811----1355312-------3874887305899983231168-------------------------6
Q gi|254780582|r 36 TGCRLLGLGYAIPF----FSCFHGK-------VERTLAFMPAGQGATNWPDQYF-------------------------S 79 (242)
Q Consensus 36 ~g~~vLdiGcg~g~----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-------------------------~ 79 (242)
T Consensus 115 ~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~~g 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCCCC
T ss_conf 97589976778872399999999997323777707999979888999998089888998459999995116415787666
Q ss_pred CE-E--------EECHHHC---CCC-CCCCCCHHHHHHHHHHCCH--HHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 23-6--------5333656---775-4720200220247752299--9999999984699988999733
Q gi|254780582|r 80 ST-A--------LVSEGNL---PLA-DSSVDCVLMVHYLEFAEDP--FLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 80 ~~-~--------~~d~~~L---Pf~-~~sfD~Vi~~h~LE~~~dp--~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfCRNVlIYFd~~~q~~vl~~~~~~L~pgG~L~lG~s 263 (287)
T PRK10611 195 LVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFCRNVMIYFDKTTQQEILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 187457876307771400679988888995199978405367899999999999998689928998388