HHsearch alignment for GI: 254780582 and conserved domain: PRK10909

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional.
Probab=94.85  E-value=0.19  Score=28.32  Aligned_cols=116  Identities=6%  Similarity=-0.087  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HHHHCCCCEEEEEE-CHHHHHHHHH------CCCCCEEEECHH
Q ss_conf             989999999999997501048975999653881113-55312387488730-5899983231------168623653336
Q gi|254780582|r   16 LGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFS-CFHGKVERTLAFMP-AGQGATNWPD------QYFSSTALVSEG   87 (242)
Q Consensus        16 ~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~d~~   87 (242)
T Consensus        35 T~drvREalFn~L~~---~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~  111 (198)
T PRK10909         35 TTDRVRETLFNWLAP---VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNAL  111 (198)
T ss_pred             CCHHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf             838899999987576---42998799827774688999998799789999789999999999999848886799955699


Q ss_pred             H-CCCCCCCCCCHHHHHHHHHHCCHHHHHHHH--HHHCCCCCEEEEEECCC
Q ss_conf             5-677547202002202477522999999999--98469998899973387
Q gi|254780582|r   88 N-LPLADSSVDCVLMVHYLEFAEDPFLMLHEI--WRVLTSGGRMIVVVPNK  135 (242)
Q Consensus        88 ~-LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei--~RvLkPgG~lii~~~n~  135 (242)
T Consensus       112 ~~L~~~~~~fDlIF~DPPY~~-~~~~~~l~~l~~~~~L~~~gliiiE~~~~  161 (198)
T PRK10909        112 SFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEQNGWLADDALIYVESEVE  161 (198)
T ss_pred             HHHHCCCCCEEEEEECCCCCC-CHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf             986255995218998999765-55999999999888918996999995488