HHsearch alignment for GI: 254780582 and conserved domain: PRK11088

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional.
Probab=99.64  E-value=3.3e-15  Score=106.82  Aligned_cols=151  Identities=18%  Similarity=0.243  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC------CCCEEEEEECHHHHHHHHHCCCC-CEEEECHHHCCCC
Q ss_conf             9999999999750104897599965388111355312------38748873058999832311686-2365333656775
Q gi|254780582|r   20 TTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK------VERTLAFMPAGQGATNWPDQYFS-STALVSEGNLPLA   92 (242)
Q Consensus        20 ~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~LPf~   92 (242)
T Consensus        70 l~~~i~~~~~~~~~~-~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~~~~~~~Va~~~~lP~~  148 (272)
T PRK11088         70 LRDAVANLLAERLDE-KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA  148 (272)
T ss_pred             HHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf             999999999975677-7864888158777899999997411578737998117999999962688854999610018887


Q ss_pred             CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf             47202002202477522999999999984699988999733877403456532766565578889999999628762125
Q gi|254780582|r   93 DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSIT  172 (242)
Q Consensus        93 ~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~  172 (242)
T Consensus       149 d~s~D~vl~vFs-------P~~~~Ef~RvLkp~G~li~V~P~~~HL~eLre~lY-~~~~~~~--~~~~~~--~~F~~~~~  216 (272)
T PRK11088        149 DQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLIY-DEVRLHA--PEAEQL--EGFELQHS  216 (272)
T ss_pred             CCCCEEEEEEEC-------CCCHHHHHHEECCCCEEEEEECCHHHHHHHHHHHH-HCCCCCC--CCHHHH--CCCCEEEE
T ss_conf             665408999843-------78858861246379789999788889999999975-1566475--541254--36844268


Q ss_pred             EEEEEECCCCC
Q ss_conf             78983086552
Q gi|254780582|r  173 SRSLFFPPTHK  183 (242)
Q Consensus       173 ~~~~~~pp~~~  183 (242)
T Consensus       217 ~~v~~~~~l~~  227 (272)
T PRK11088        217 ERLAYPMRLTG  227 (272)
T ss_pred             EEEEEEEECCH
T ss_conf             99999986588