HHsearch alignment for GI: 254780582 and conserved domain: PRK11088
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional.
Probab=99.64 E-value=3.3e-15 Score=106.82 Aligned_cols=151 Identities=18% Similarity=0.243 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC------CCCEEEEEECHHHHHHHHHCCCC-CEEEECHHHCCCC
Q ss_conf 9999999999750104897599965388111355312------38748873058999832311686-2365333656775
Q gi|254780582|r 20 TTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK------VERTLAFMPAGQGATNWPDQYFS-STALVSEGNLPLA 92 (242)
Q Consensus 20 ~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~LPf~ 92 (242)
T Consensus 70 l~~~i~~~~~~~~~~-~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~~~~~~~Va~~~~lP~~ 148 (272)
T PRK11088 70 LRDAVANLLAERLDE-KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA 148 (272)
T ss_pred HHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 999999999975677-7864888158777899999997411578737998117999999962688854999610018887
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 47202002202477522999999999984699988999733877403456532766565578889999999628762125
Q gi|254780582|r 93 DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSIT 172 (242)
Q Consensus 93 ~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~ 172 (242)
T Consensus 149 d~s~D~vl~vFs-------P~~~~Ef~RvLkp~G~li~V~P~~~HL~eLre~lY-~~~~~~~--~~~~~~--~~F~~~~~ 216 (272)
T PRK11088 149 DQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLIY-DEVRLHA--PEAEQL--EGFELQHS 216 (272)
T ss_pred CCCCEEEEEEEC-------CCCHHHHHHEECCCCEEEEEECCHHHHHHHHHHHH-HCCCCCC--CCHHHH--CCCCEEEE
T ss_conf 665408999843-------78858861246379789999788889999999975-1566475--541254--36844268
Q ss_pred EEEEEECCCCC
Q ss_conf 78983086552
Q gi|254780582|r 173 SRSLFFPPTHK 183 (242)
Q Consensus 173 ~~~~~~pp~~~ 183 (242)
T Consensus 217 ~~v~~~~~l~~ 227 (272)
T PRK11088 217 ERLAYPMRLTG 227 (272)
T ss_pred EEEEEEEECCH
T ss_conf 99999986588