HHsearch alignment for GI: 254780582 and conserved domain: PRK11783
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional.
Probab=95.93 E-value=0.066 Score=30.95 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCCCHHHHHHH--CCCCEEEEEECHHHHHHHHHC--------CCCCEEEECHHHC-CCCCCCCCCHHH--
Q ss_conf 489759996538811135531--238748873058999832311--------6862365333656-775472020022--
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHG--KVERTLAFMPAGQGATNWPDQ--------YFSSTALVSEGNL-PLADSSVDCVLM-- 101 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~L-Pf~~~sfD~Vi~-- 101 (242)
T Consensus 551 a~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DP 630 (716)
T PRK11783 551 AKGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDP 630 (716)
T ss_pred HCCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECC
T ss_conf 07884643122256102133527961227862708799999999985499963473896408999985777667899889
Q ss_pred ---------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf ---------0247752299999999998469998899973
Q gi|254780582|r 102 ---------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 102 ---------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
T Consensus 631 PtFSnSk~m~~~~dvqrDh~~li~~~~~~L~~~G~l~FS~ 670 (716)
T PRK11783 631 PTFSNSKRMEDSFDVQRDHVALIKLAMRLLRPGGTLYFSN 670 (716)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9998766678863220309999999998608996899962