HHsearch alignment for GI: 254780582 and conserved domain: PRK13168

>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=92.21  E-value=0.91  Score=24.47  Aligned_cols=150  Identities=16%  Similarity=0.118  Sum_probs=74.3

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHC---C---CCCE
Q ss_conf             996128898999999999999750104897599965388111355312-38748873058999832311---6---8623
Q gi|254780582|r    9 RQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQ---Y---FSST   81 (242)
Q Consensus         9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~---~~~~   81 (242)
T Consensus       269 ~sFfQvN~~--~ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f  346 (440)
T PRK13168        269 TDFIQVNAQ--VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTF  346 (440)
T ss_pred             CCEEEECHH--HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEE
T ss_conf             987865999--999999999998526789889986238562111135306768876057999999999999749998789


Q ss_pred             EEECHHH-C---CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHH
Q ss_conf             6533365-6---77547202002202477522999999999984699988999733877403456532766565578889
Q gi|254780582|r   82 ALVSEGN-L---PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQ  157 (242)
Q Consensus        82 ~~~d~~~-L---Pf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~  157 (242)
T Consensus       347 ~~~d~~~~l~~~~~~~~~~D~vi~DPPR~--G-~~~~i~~l~~-~~p~-~IvYVSCnPa-----------------TlAR  404 (440)
T PRK13168        347 YHANLFEDFTDQPWAKGGFDKVLLDPPRA--G-AFEVMQALAK-LKPK-RIVYVSCNPA-----------------TLAR  404 (440)
T ss_pred             EECCHHHHHHHHHHHCCCCCEEEECCCCC--C-HHHHHHHHHH-CCCC-EEEEECCCHH-----------------HHHH
T ss_conf             97464566355786379999899998852--7-8999999984-7989-7999938989-----------------9999


Q ss_pred             HHHHHHHCCCCCEEEEEEEEECCCC
Q ss_conf             9999996287621257898308655
Q gi|254780582|r  158 MISLLREANFTLSITSRSLFFPPTH  182 (242)
Q Consensus       158 l~~~l~~~gf~~~~~~~~~~~pp~~  182 (242)
T Consensus       405 Dl~~L~~~GY~l~~i~~vDmFP~T~  429 (440)
T PRK13168        405 DAGVLVEAGYRLKRAGVLDMFPHTG  429 (440)
T ss_pred             HHHHHHHCCCEEEEEEEEECCCCCC
T ss_conf             9999987894895999960699998