HHsearch alignment for GI: 254780582 and conserved domain: PRK13168
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed.
Probab=92.21 E-value=0.91 Score=24.47 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=74.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHC---C---CCCE
Q ss_conf 996128898999999999999750104897599965388111355312-38748873058999832311---6---8623
Q gi|254780582|r 9 RQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQ---Y---FSST 81 (242)
Q Consensus 9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~---~~~~ 81 (242)
T Consensus 269 ~sFfQvN~~--~ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f 346 (440)
T PRK13168 269 TDFIQVNAQ--VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTF 346 (440)
T ss_pred CCEEEECHH--HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 987865999--999999999998526789889986238562111135306768876057999999999999749998789
Q ss_pred EEECHHH-C---CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHH
Q ss_conf 6533365-6---77547202002202477522999999999984699988999733877403456532766565578889
Q gi|254780582|r 82 ALVSEGN-L---PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQ 157 (242)
Q Consensus 82 ~~~d~~~-L---Pf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~ 157 (242)
T Consensus 347 ~~~d~~~~l~~~~~~~~~~D~vi~DPPR~--G-~~~~i~~l~~-~~p~-~IvYVSCnPa-----------------TlAR 404 (440)
T PRK13168 347 YHANLFEDFTDQPWAKGGFDKVLLDPPRA--G-AFEVMQALAK-LKPK-RIVYVSCNPA-----------------TLAR 404 (440)
T ss_pred EECCHHHHHHHHHHHCCCCCEEEECCCCC--C-HHHHHHHHHH-CCCC-EEEEECCCHH-----------------HHHH
T ss_conf 97464566355786379999899998852--7-8999999984-7989-7999938989-----------------9999
Q ss_pred HHHHHHHCCCCCEEEEEEEEECCCC
Q ss_conf 9999996287621257898308655
Q gi|254780582|r 158 MISLLREANFTLSITSRSLFFPPTH 182 (242)
Q Consensus 158 l~~~l~~~gf~~~~~~~~~~~pp~~ 182 (242)
T Consensus 405 Dl~~L~~~GY~l~~i~~vDmFP~T~ 429 (440)
T PRK13168 405 DAGVLVEAGYRLKRAGVLDMFPHTG 429 (440)
T ss_pred HHHHHHHCCCEEEEEEEEECCCCCC
T ss_conf 9999987894895999960699998