HHsearch alignment for GI: 254780582 and conserved domain: TIGR00438

>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=96.89  E-value=0.0034  Score=38.30  Aligned_cols=97  Identities=20%  Similarity=0.047  Sum_probs=63.3

Q ss_pred             CCCEEEEECCCCCHHHHHH----HCCCCEEEEEECHHHHHHHHHCCCCCEEEECH----------HHCCCCCCCCCCHHH
Q ss_conf             8975999653881113553----12387488730589998323116862365333----------656775472020022
Q gi|254780582|r   36 TGCRLLGLGYAIPFFSCFH----GKVERTLAFMPAGQGATNWPDQYFSSTALVSE----------GNLPLADSSVDCVLM  101 (242)
Q Consensus        36 ~g~~vLdiGcg~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----------~~LPf~~~sfD~Vi~  101 (242)
T Consensus        32 ~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~---k~FP~~nv~fi~GDftdee~l~ki~~~~g~dekk~DVV~S  108 (192)
T TIGR00438        32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM---KGFPIENVDFIRGDFTDEEVLNKILERVGDDEKKVDVVMS  108 (192)
T ss_pred             CCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCC---CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf             7886786578987387788776068533899854557---8856466147544767878999999857898743778985


Q ss_pred             H--------HHHHH---HCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             0--------24775---2299999999998469998899973387
Q gi|254780582|r  102 V--------HYLEF---AEDPFLMLHEIWRVLTSGGRMIVVVPNK  135 (242)
Q Consensus       102 ~--------h~LE~---~~dp~~~L~Ei~RvLkPgG~lii~~~n~  135 (242)
T Consensus       109 DaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~GnfvvKvFqG  153 (192)
T TIGR00438       109 DAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG  153 (192)
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf             268887898754344379999999999999861589899998537