Query gi|254780582|ref|YP_003064995.1| Methyltransferase type 11 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 242
No_of_seqs 176 out of 2176
Neff 8.2
Searched_HMMs 39220
Date Sun May 29 22:59:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780582.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05134 3-demethylubiquinone- 99.9 2E-25 5E-30 165.2 16.6 177 25-215 37-232 (233)
2 PRK10258 biotin biosynthesis p 99.9 3.2E-24 8.1E-29 158.3 15.3 162 18-179 24-192 (251)
3 PRK08317 hypothetical protein; 99.9 1.1E-23 2.8E-28 155.2 15.0 156 22-177 5-179 (241)
4 TIGR01983 UbiG ubiquinone bios 99.9 1.4E-24 3.7E-29 160.2 10.0 158 26-183 74-263 (275)
5 PRK00216 ubiE ubiquinone/menaq 99.9 4.1E-24 1E-28 157.7 11.7 153 22-174 37-225 (239)
6 pfam01209 Ubie_methyltran ubiE 99.9 3.9E-23 1E-27 152.1 13.1 154 22-175 33-221 (233)
7 COG2226 UbiE Methylase involve 99.9 3.7E-22 9.5E-27 146.5 12.2 151 23-173 38-223 (238)
8 PRK11036 putative metallothion 99.9 9E-21 2.3E-25 138.6 15.0 206 9-214 15-254 (256)
9 TIGR02072 BioC biotin biosynth 99.9 2.4E-20 6.1E-25 136.2 14.1 166 18-183 13-207 (272)
10 PRK11873 arsM arsenite S-adeno 99.9 5E-21 1.3E-25 140.0 10.4 141 34-174 71-226 (258)
11 TIGR01934 MenG_MenH_UbiE ubiqu 99.9 6.3E-21 1.6E-25 139.5 10.3 144 34-177 41-232 (242)
12 smart00828 PKS_MT Methyltransf 99.8 3.5E-20 8.9E-25 135.2 13.3 177 38-217 1-205 (224)
13 pfam07021 MetW Methionine bios 99.8 1.3E-19 3.3E-24 132.0 13.8 144 26-175 5-168 (193)
14 PTZ00098 phosphoethanolamine N 99.8 1.4E-19 3.5E-24 131.8 13.7 147 27-174 43-202 (263)
15 COG2227 UbiG 2-polyprenyl-3-me 99.8 1.4E-20 3.7E-25 137.4 8.2 167 35-215 58-242 (243)
16 PRK01683 trans-aconitate 2-met 99.8 1.4E-18 3.5E-23 126.1 15.7 171 2-179 3-186 (252)
17 PRK05785 hypothetical protein; 99.7 6.5E-17 1.7E-21 116.6 11.9 98 35-134 50-147 (225)
18 KOG1540 consensus 99.7 1.5E-16 3.9E-21 114.5 11.5 148 24-171 88-278 (296)
19 KOG1270 consensus 99.7 5E-17 1.3E-21 117.2 8.2 148 37-187 90-262 (282)
20 pfam08241 Methyltransf_11 Meth 99.7 2.1E-17 5.4E-22 119.4 6.2 90 41-130 1-95 (95)
21 pfam02353 CMAS Cyclopropane-fa 99.6 7.1E-15 1.8E-19 104.9 13.7 165 20-187 43-230 (273)
22 pfam08003 Methyltransf_9 Prote 99.6 2.9E-15 7.5E-20 107.1 11.3 149 25-176 104-269 (315)
23 PRK11088 rrmA 23S rRNA methylt 99.6 3.3E-15 8.5E-20 106.8 11.4 151 20-183 70-227 (272)
24 KOG4300 consensus 99.6 1.6E-15 4E-20 108.7 9.0 166 9-175 50-233 (252)
25 TIGR02081 metW methionine bios 99.6 2.4E-15 6E-20 107.7 8.7 142 26-174 5-176 (205)
26 pfam08242 Methyltransf_12 Meth 99.5 5.6E-15 1.4E-19 105.5 4.6 88 41-128 1-98 (98)
27 cd02440 AdoMet_MTases S-adenos 99.5 6.4E-14 1.6E-18 99.5 7.3 94 39-132 1-104 (107)
28 COG2230 Cfa Cyclopropane fatty 99.5 4.9E-13 1.2E-17 94.5 11.6 155 22-176 58-225 (283)
29 PRK07580 Mg-protoporphyrin IX 99.5 8.5E-13 2.2E-17 93.1 11.9 147 24-175 48-215 (230)
30 pfam05219 DREV DREV methyltran 99.4 8.1E-12 2.1E-16 87.5 12.0 143 36-180 94-246 (265)
31 pfam05148 Methyltransf_8 Hypot 99.4 1.4E-11 3.6E-16 86.1 11.2 113 36-173 67-179 (214)
32 PRK11705 cyclopropane fatty ac 99.3 2E-11 5E-16 85.3 11.7 151 20-174 148-312 (383)
33 KOG3045 consensus 99.3 5.5E-11 1.4E-15 82.8 10.8 111 36-173 180-290 (325)
34 TIGR02752 MenG_heptapren 2-hep 99.2 1.3E-10 3.3E-15 80.7 8.3 150 26-175 35-219 (231)
35 COG4976 Predicted methyltransf 99.2 1.2E-10 3.2E-15 80.7 8.1 155 17-175 107-266 (287)
36 KOG2940 consensus 99.2 3.5E-10 8.9E-15 78.2 9.7 157 18-174 52-227 (325)
37 PRK06202 hypothetical protein; 99.1 6.2E-10 1.6E-14 76.7 10.3 137 35-175 60-224 (233)
38 TIGR00452 TIGR00452 methyltran 99.1 5.3E-10 1.4E-14 77.1 9.9 155 26-180 111-281 (316)
39 PRK11207 tellurite resistance 99.1 5.4E-10 1.4E-14 77.1 9.5 136 32-175 26-171 (198)
40 COG4106 Tam Trans-aconitate me 99.1 4E-09 1E-13 72.1 13.5 172 1-179 1-191 (257)
41 pfam05175 MTS Methyltransferas 99.1 6.4E-10 1.6E-14 76.7 7.6 110 26-136 21-144 (170)
42 TIGR02021 BchM-ChlM magnesium 98.9 1E-08 2.6E-13 69.8 10.2 149 24-177 39-214 (224)
43 KOG3010 consensus 98.9 4.7E-09 1.2E-13 71.7 8.3 98 36-134 32-138 (261)
44 KOG2361 consensus 98.9 1.1E-08 2.9E-13 69.5 9.1 169 9-177 40-240 (264)
45 pfam03141 DUF248 Putative meth 98.9 5.7E-10 1.4E-14 77.0 1.0 152 26-185 103-266 (506)
46 pfam05401 NodS Nodulation prot 98.8 8.3E-09 2.1E-13 70.3 5.6 133 31-173 38-179 (201)
47 PRK06922 hypothetical protein; 98.8 3.1E-08 7.9E-13 67.1 7.4 100 32-131 416-538 (679)
48 pfam03291 Pox_MCEL mRNA cappin 98.7 1.7E-07 4.3E-12 62.9 10.3 144 32-175 59-267 (327)
49 PRK13942 protein-L-isoaspartat 98.7 9.3E-08 2.4E-12 64.3 8.9 104 25-134 65-178 (214)
50 KOG1541 consensus 98.7 6.5E-08 1.7E-12 65.2 7.8 102 32-133 46-161 (270)
51 COG2264 PrmA Ribosomal protein 98.7 7.9E-08 2E-12 64.8 7.8 119 36-174 162-288 (300)
52 pfam06080 DUF938 Protein of un 98.7 2.7E-07 6.8E-12 61.7 10.2 155 17-174 7-189 (201)
53 pfam03848 TehB Tellurite resis 98.7 1.2E-07 3.2E-12 63.6 8.1 137 31-174 25-169 (192)
54 KOG1269 consensus 98.7 2.5E-08 6.4E-13 67.6 4.4 143 33-175 107-268 (364)
55 KOG3987 consensus 98.7 3.2E-08 8.1E-13 67.0 4.9 141 37-180 113-266 (288)
56 PRK00517 prmA ribosomal protei 98.6 1.5E-07 3.7E-12 63.2 7.7 127 26-174 154-286 (298)
57 pfam01234 NNMT_PNMT_TEMT NNMT/ 98.6 1E-06 2.6E-11 58.4 11.9 193 2-214 15-261 (261)
58 COG4627 Uncharacterized protei 98.6 4.8E-08 1.2E-12 66.0 4.6 91 80-170 31-134 (185)
59 pfam01135 PCMT Protein-L-isoas 98.6 3.3E-07 8.3E-12 61.2 8.7 104 24-133 61-174 (205)
60 pfam06325 PrmA Ribosomal prote 98.6 2E-07 5E-12 62.5 7.4 124 26-174 152-282 (294)
61 KOG1331 consensus 98.6 1.3E-07 3.3E-12 63.5 6.4 97 36-134 45-145 (293)
62 PRK00312 pcm protein-L-isoaspa 98.6 3.5E-07 9E-12 61.0 8.5 106 24-135 66-178 (213)
63 COG2813 RsmC 16S RNA G1207 met 98.6 3.1E-07 7.9E-12 61.4 7.8 108 25-133 147-267 (300)
64 COG2242 CobL Precorrin-6B meth 98.6 1.4E-06 3.5E-11 57.7 11.0 138 14-173 12-160 (187)
65 PRK13944 protein-L-isoaspartat 98.6 5.5E-07 1.4E-11 59.9 8.8 105 25-135 61-176 (205)
66 PRK09489 rsmC 16S ribosomal RN 98.5 7.8E-07 2E-11 59.1 9.4 109 25-136 185-306 (342)
67 PRK00377 cbiT cobalt-precorrin 98.5 2.2E-06 5.5E-11 56.5 11.6 162 19-214 23-197 (198)
68 pfam11968 DUF3321 Protein of u 98.5 7.8E-07 2E-11 59.1 8.3 118 38-174 54-182 (220)
69 COG2521 Predicted archaeal met 98.5 8E-07 2E-11 59.0 8.0 127 33-172 131-275 (287)
70 COG2519 GCD14 tRNA(1-methylade 98.4 1.9E-06 4.8E-11 56.9 8.5 128 26-176 84-222 (256)
71 KOG1975 consensus 98.4 5.9E-07 1.5E-11 59.7 5.3 115 23-138 105-243 (389)
72 pfam00891 Methyltransf_2 O-met 98.3 8.1E-06 2.1E-10 53.3 10.1 127 33-162 98-238 (239)
73 COG4123 Predicted O-methyltran 98.3 6.5E-06 1.7E-10 53.8 9.0 131 27-175 35-195 (248)
74 COG1041 Predicted DNA modifica 98.3 5.6E-06 1.4E-10 54.2 8.4 128 24-173 185-329 (347)
75 TIGR00406 prmA ribosomal prote 98.3 1E-06 2.6E-11 58.4 4.4 120 34-173 192-324 (330)
76 PRK11805 N5-glutamine S-adenos 98.3 6.5E-06 1.7E-10 53.8 8.5 114 22-136 119-267 (307)
77 PRK07402 precorrin-6B methylas 98.3 9.7E-06 2.5E-10 52.8 9.1 163 19-215 23-196 (196)
78 PRK13943 protein-L-isoaspartat 98.2 7.8E-06 2E-10 53.4 8.5 103 24-132 63-175 (317)
79 KOG2352 consensus 98.2 9.2E-06 2.4E-10 52.9 8.3 96 38-133 50-162 (482)
80 pfam07942 N2227 N2227-like pro 98.2 1.3E-05 3.4E-10 52.1 8.8 167 6-176 17-241 (268)
81 COG2518 Pcm Protein-L-isoaspar 98.2 1.6E-05 4E-10 51.6 9.1 103 24-133 60-170 (209)
82 TIGR02469 CbiT precorrin-6Y C5 98.2 2.1E-05 5.3E-10 51.0 9.3 109 21-132 4-133 (135)
83 PRK12335 tellurite resistance 98.2 8.6E-06 2.2E-10 53.1 7.3 158 10-174 92-261 (289)
84 TIGR03533 L3_gln_methyl protei 98.1 2.6E-05 6.7E-10 50.4 9.1 112 23-135 108-254 (284)
85 PRK08287 cobalt-precorrin-6Y C 98.1 2.4E-05 6E-10 50.6 8.9 169 10-216 5-185 (186)
86 pfam08704 GCD14 tRNA methyltra 98.1 3.7E-05 9.5E-10 49.5 9.4 132 24-177 90-236 (309)
87 COG0500 SmtA SAM-dependent met 98.1 5.1E-05 1.3E-09 48.7 9.7 99 40-139 52-162 (257)
88 pfam10294 Methyltransf_16 Puta 98.0 5.5E-05 1.4E-09 48.5 8.7 103 34-136 42-158 (171)
89 PRK00121 trmB tRNA (guanine-N( 98.0 3.5E-05 8.8E-10 49.7 7.4 94 37-135 55-173 (229)
90 TIGR03534 RF_mod_HemK protein- 97.9 7.5E-05 1.9E-09 47.7 8.4 119 36-173 87-240 (251)
91 smart00138 MeTrc Methyltransfe 97.9 0.00014 3.6E-09 46.2 9.4 97 36-132 99-242 (264)
92 KOG1271 consensus 97.9 3.8E-05 9.8E-10 49.4 6.4 116 38-171 69-202 (227)
93 KOG2899 consensus 97.8 0.00021 5.4E-09 45.2 9.1 138 35-173 57-254 (288)
94 pfam03269 DUF268 Caenorhabditi 97.8 4.7E-05 1.2E-09 48.9 5.7 128 36-172 1-143 (177)
95 pfam01170 UPF0020 Putative RNA 97.8 0.00015 3.7E-09 46.1 8.0 113 23-137 15-145 (171)
96 pfam09243 Rsm22 Mitochondrial 97.8 0.00026 6.5E-09 44.7 9.2 120 14-135 12-143 (275)
97 pfam02390 Methyltransf_4 Putat 97.8 8.2E-05 2.1E-09 47.5 6.7 95 37-136 21-141 (199)
98 TIGR00477 tehB tellurite resis 97.8 5.8E-05 1.5E-09 48.4 5.5 101 32-133 69-179 (239)
99 KOG1709 consensus 97.7 0.00036 9.1E-09 43.9 9.3 102 35-138 100-210 (271)
100 KOG1499 consensus 97.7 8.7E-05 2.2E-09 47.4 5.8 104 33-139 57-171 (346)
101 pfam01739 CheR CheR methyltran 97.7 0.00033 8.4E-09 44.1 8.3 96 36-132 30-173 (194)
102 TIGR00537 hemK_rel_arch methyl 97.7 0.00029 7.4E-09 44.4 7.8 129 28-174 12-169 (183)
103 pfam05724 TPMT Thiopurine S-me 97.6 0.00076 1.9E-08 42.0 9.8 139 33-178 19-179 (203)
104 COG0220 Predicted S-adenosylme 97.6 0.0002 5E-09 45.4 6.5 95 37-136 49-168 (227)
105 PRK09328 N5-glutamine S-adenos 97.6 0.00084 2.2E-08 41.8 9.2 119 36-173 109-261 (277)
106 pfam05891 Hydroxy-O-Methy Puta 97.5 0.0021 5.3E-08 39.5 10.7 140 38-180 57-206 (217)
107 pfam02475 Met_10 Met-10+ like- 97.5 0.00081 2.1E-08 41.8 8.5 101 22-129 88-198 (199)
108 TIGR00740 TIGR00740 methyltran 97.5 0.00076 1.9E-08 42.0 8.3 124 34-159 59-201 (247)
109 COG4122 Predicted O-methyltran 97.5 0.00017 4.3E-09 45.8 4.8 105 26-133 49-167 (219)
110 PRK01544 bifunctional N5-gluta 97.4 0.001 2.6E-08 41.3 7.9 94 36-133 135-267 (503)
111 pfam01596 Methyltransf_3 O-met 97.4 0.0016 4E-08 40.2 8.4 106 24-132 32-154 (204)
112 PRK10901 16S rRNA methyltransf 97.3 0.0022 5.7E-08 39.4 9.0 162 22-215 231-428 (428)
113 PRK00107 gidB glucose-inhibite 97.3 0.0023 5.9E-08 39.2 9.0 127 29-175 62-197 (216)
114 PRK11933 yebU rRNA (cytosine-C 97.3 0.002 5E-08 39.7 8.5 102 32-133 109-243 (471)
115 PRK01544 bifunctional N5-gluta 97.3 0.0012 3.1E-08 40.8 7.4 124 6-134 304-461 (503)
116 KOG1500 consensus 97.3 0.00098 2.5E-08 41.4 6.5 99 33-133 174-283 (517)
117 COG2890 HemK Methylase of poly 97.2 0.0023 5.9E-08 39.2 8.1 111 39-167 113-255 (280)
118 COG5459 Predicted rRNA methyla 97.2 0.0011 2.9E-08 41.0 6.3 114 26-141 103-234 (484)
119 TIGR03587 Pse_Me-ase pseudamin 97.2 0.003 7.7E-08 38.6 8.3 127 7-136 4-147 (204)
120 COG1352 CheR Methylase of chem 97.2 0.0031 7.8E-08 38.6 8.1 96 36-131 96-240 (268)
121 pfam12147 Hydrolase_5 Putative 97.1 0.013 3.4E-07 34.9 10.9 154 19-173 118-297 (311)
122 KOG3178 consensus 97.1 0.015 3.7E-07 34.7 10.8 146 30-179 167-335 (342)
123 pfam01269 Fibrillarin Fibrilla 97.0 0.0029 7.5E-08 38.7 6.9 153 7-174 47-212 (229)
124 COG3963 Phospholipid N-methylt 97.0 0.0097 2.5E-07 35.7 9.6 131 8-138 16-162 (194)
125 KOG3191 consensus 97.0 0.016 4E-07 34.5 10.1 64 6-70 13-81 (209)
126 TIGR00091 TIGR00091 tRNA (guan 96.9 0.0024 6E-08 39.2 5.7 158 36-214 19-214 (216)
127 TIGR00438 rrmJ ribosomal RNA l 96.9 0.0034 8.7E-08 38.3 6.3 97 36-135 32-153 (192)
128 COG2263 Predicted RNA methylas 96.9 0.033 8.4E-07 32.7 12.2 62 12-76 24-87 (198)
129 pfam01189 Nol1_Nop2_Fmu NOL1/N 96.8 0.0083 2.1E-07 36.1 7.7 110 24-133 72-215 (277)
130 PTZ00146 fibrillarin; Provisio 96.8 0.004 1E-07 37.9 5.9 151 6-174 108-274 (296)
131 TIGR00755 ksgA dimethyladenosi 96.8 0.0032 8.3E-08 38.4 5.4 85 13-97 4-99 (277)
132 PRK11188 rrmJ 23S rRNA methylt 96.7 0.019 4.8E-07 34.1 8.8 97 35-136 50-169 (209)
133 TIGR02716 C20_methyl_CrtF C-20 96.7 0.012 3.2E-07 35.1 7.9 132 37-170 150-302 (306)
134 KOG1661 consensus 96.6 0.0047 1.2E-07 37.5 5.2 103 23-133 71-194 (237)
135 pfam01728 FtsJ FtsJ-like methy 96.5 0.014 3.5E-07 34.9 7.1 95 35-134 20-135 (176)
136 TIGR03438 probable methyltrans 96.5 0.019 4.9E-07 34.0 7.8 129 5-135 34-180 (301)
137 COG4798 Predicted methyltransf 96.5 0.027 6.9E-07 33.2 8.5 148 28-179 40-210 (238)
138 PRK04266 fibrillarin; Provisio 96.5 0.0083 2.1E-07 36.1 5.9 150 6-174 45-210 (226)
139 KOG3201 consensus 96.4 0.0015 3.7E-08 40.4 1.7 126 31-172 24-164 (201)
140 PRK09329 N5-glutamine S-adenos 96.4 0.011 2.7E-07 35.5 6.0 118 30-169 102-256 (285)
141 PRK00536 speE spermidine synth 96.3 0.016 4E-07 34.5 6.6 100 32-136 68-175 (262)
142 PRK04457 spermidine synthase; 96.3 0.057 1.4E-06 31.3 9.2 110 25-134 55-179 (262)
143 COG0144 Sun tRNA and rRNA cyto 96.2 0.05 1.3E-06 31.6 8.6 168 25-215 145-354 (355)
144 PRK13341 recombination factor 96.2 0.1 2.5E-06 29.9 12.0 174 5-179 459-667 (726)
145 COG1092 Predicted SAM-dependen 96.2 0.03 7.6E-07 32.9 7.3 136 23-173 207-365 (393)
146 PRK00811 spermidine synthase; 96.1 0.019 4.8E-07 34.1 6.1 128 32-179 74-225 (283)
147 pfam02527 GidB rRNA small subu 96.0 0.12 3.1E-06 29.4 11.1 98 29-132 42-148 (184)
148 PRK11783 rlmL 23S rRNA m(2)G24 95.9 0.066 1.7E-06 30.9 8.2 98 35-132 551-670 (716)
149 COG2520 Predicted methyltransf 95.9 0.059 1.5E-06 31.2 7.8 132 22-170 176-316 (341)
150 COG0421 SpeE Spermidine syntha 95.9 0.083 2.1E-06 30.4 8.6 96 38-135 78-193 (282)
151 KOG2915 consensus 95.8 0.037 9.5E-07 32.4 6.3 98 25-127 94-204 (314)
152 PRK11524 putative methyltransf 95.7 0.013 3.3E-07 35.0 3.7 30 106-135 54-83 (284)
153 KOG0820 consensus 95.6 0.052 1.3E-06 31.6 6.7 89 11-101 31-129 (315)
154 COG0030 KsgA Dimethyladenosine 95.6 0.053 1.4E-06 31.5 6.7 87 14-100 6-100 (259)
155 PRK10611 chemotaxis methyltran 95.6 0.0073 1.9E-07 36.4 2.3 98 36-133 115-263 (287)
156 pfam02384 N6_Mtase N-6 DNA Met 95.6 0.073 1.9E-06 30.7 7.4 133 22-166 32-206 (312)
157 pfam03141 DUF248 Putative meth 95.6 0.054 1.4E-06 31.4 6.6 95 32-131 361-466 (506)
158 KOG3420 consensus 95.6 0.019 4.8E-07 34.0 4.2 57 20-76 32-90 (185)
159 PRK00274 ksgA dimethyladenosin 95.5 0.041 1.1E-06 32.1 5.7 80 14-93 15-97 (267)
160 COG0293 FtsJ 23S rRNA methylas 95.4 0.14 3.6E-06 29.1 8.3 95 36-135 45-162 (205)
161 smart00650 rADc Ribosomal RNA 95.4 0.034 8.7E-07 32.6 5.1 68 26-93 3-75 (169)
162 pfam04672 DUF574 Protein of un 95.3 0.23 5.8E-06 27.9 12.2 134 37-172 70-235 (268)
163 PTZ00338 dimethyladenosine tra 95.2 0.056 1.4E-06 31.4 5.6 98 13-112 13-131 (296)
164 KOG1663 consensus 95.2 0.17 4.2E-06 28.7 8.0 103 26-131 63-182 (237)
165 TIGR03439 methyl_EasF probable 95.1 0.18 4.5E-06 28.5 8.1 174 5-180 47-250 (319)
166 COG3897 Predicted methyltransf 95.1 0.068 1.7E-06 30.9 5.9 112 23-135 66-182 (218)
167 COG0357 GidB Predicted S-adeno 95.1 0.25 6.5E-06 27.6 8.8 120 37-175 68-196 (215)
168 TIGR00138 gidB methyltransfera 95.1 0.11 2.9E-06 29.6 6.9 91 37-131 50-152 (197)
169 PRK10909 rsmD 16S rRNA m(2)G96 94.8 0.19 4.9E-06 28.3 7.5 116 16-135 35-161 (198)
170 pfam03602 Cons_hypoth95 Conser 94.8 0.31 7.8E-06 27.2 8.5 113 22-135 26-154 (181)
171 PRK10083 putative dehydrogenas 94.8 0.32 8.1E-06 27.1 9.0 138 30-171 154-305 (339)
172 pfam10672 Methyltrans_SAM S-ad 94.8 0.16 4E-06 28.8 6.9 123 34-174 121-264 (286)
173 PRK09880 L-idonate 5-dehydroge 94.6 0.21 5.3E-06 28.1 7.3 96 32-134 165-268 (343)
174 TIGR00080 pimt protein-L-isoas 94.6 0.022 5.6E-07 33.7 2.2 100 27-133 71-188 (228)
175 KOG2904 consensus 94.5 0.15 3.9E-06 28.9 6.3 36 33-68 145-183 (328)
176 pfam01564 Spermine_synth Sperm 94.3 0.34 8.7E-06 26.9 7.7 133 34-181 73-223 (240)
177 COG1189 Predicted rRNA methyla 94.2 0.35 8.9E-06 26.8 7.6 155 10-174 57-224 (245)
178 pfam00398 RrnaAD Ribosomal RNA 94.2 0.16 4.2E-06 28.7 5.9 79 15-93 7-92 (258)
179 PRK03522 rumB 23S rRNA methylu 94.1 0.25 6.4E-06 27.6 6.8 64 9-74 208-272 (375)
180 PRK13255 thiopurine S-methyltr 93.9 0.42 1.1E-05 26.3 7.6 145 25-176 23-192 (218)
181 pfam11899 DUF3419 Protein of u 93.9 0.052 1.3E-06 31.5 2.9 45 90-134 287-333 (376)
182 KOG2798 consensus 93.9 0.09 2.3E-06 30.2 4.1 80 93-175 257-338 (369)
183 PRK01581 speE spermidine synth 93.8 0.52 1.3E-05 25.8 8.3 127 36-182 139-292 (363)
184 TIGR03451 mycoS_dep_FDH mycoth 93.7 0.44 1.1E-05 26.2 7.4 96 32-133 172-277 (358)
185 pfam05958 tRNA_U5-meth_tr tRNA 93.2 0.4 1E-05 26.5 6.5 63 9-74 173-236 (353)
186 pfam08123 DOT1 Histone methyla 93.1 0.34 8.7E-06 26.9 6.0 127 4-133 8-159 (205)
187 PRK05031 tRNA (uracil-5-)-meth 92.8 0.45 1.1E-05 26.2 6.3 63 10-75 184-247 (363)
188 PRK03612 spermidine synthase; 92.8 0.75 1.9E-05 24.9 7.4 133 34-181 291-445 (516)
189 TIGR00692 tdh L-threonine 3-de 92.8 0.58 1.5E-05 25.6 6.8 149 13-175 145-314 (341)
190 pfam10354 DUF2431 Domain of un 92.6 0.52 1.3E-05 25.8 6.4 77 84-175 60-153 (166)
191 KOG1122 consensus 92.4 0.87 2.2E-05 24.6 7.3 102 31-133 236-372 (460)
192 pfam08468 MTS_N Methyltransfer 92.3 0.88 2.2E-05 24.5 7.8 110 28-141 4-114 (155)
193 COG1889 NOP1 Fibrillarin-like 92.3 0.6 1.5E-05 25.5 6.4 151 6-174 49-214 (231)
194 PRK05396 tdh L-threonine 3-deh 92.2 0.9 2.3E-05 24.5 8.0 96 34-135 161-266 (341)
195 PRK13168 rumA 23S rRNA 5-methy 92.2 0.91 2.3E-05 24.5 9.4 150 9-182 269-429 (440)
196 pfam09445 Methyltransf_15 RNA 91.9 0.22 5.6E-06 28.0 3.8 39 38-76 2-41 (165)
197 COG1064 AdhP Zn-dependent alco 91.8 0.92 2.3E-05 24.4 6.9 96 32-135 162-262 (339)
198 TIGR03366 HpnZ_proposed putati 91.8 0.49 1.2E-05 26.0 5.4 93 32-132 116-218 (280)
199 COG0742 N6-adenine-specific me 91.3 1.2 2.9E-05 23.9 8.2 116 20-135 25-157 (187)
200 TIGR00479 rumA 23S rRNA (uraci 91.2 0.35 8.8E-06 26.9 4.2 153 7-182 267-431 (434)
201 PRK11760 putative RNA 2'-O-rib 90.7 0.76 1.9E-05 24.9 5.6 119 34-169 208-333 (356)
202 PRK13771 putative alcohol dehy 90.6 1.3 3.4E-05 23.5 7.4 92 32-132 158-255 (332)
203 KOG2539 consensus 90.2 0.35 8.9E-06 26.8 3.5 115 20-134 184-317 (491)
204 pfam03492 Methyltransf_7 SAM d 89.6 1.1 2.7E-05 24.0 5.6 86 89-176 98-252 (331)
205 PRK13699 putative methylase; P 89.4 0.34 8.6E-06 26.9 2.9 21 111-131 51-71 (227)
206 KOG2920 consensus 89.0 0.39 9.9E-06 26.6 3.0 23 34-56 114-136 (282)
207 pfam03059 NAS Nicotianamine sy 89.0 1.8 4.6E-05 22.8 9.0 136 21-172 107-256 (277)
208 COG2265 TrmA SAM-dependent met 88.2 2 5.2E-05 22.4 11.1 151 9-182 268-428 (432)
209 pfam06859 Bin3 Bicoid-interact 87.4 0.32 8.3E-06 27.0 1.8 76 95-171 1-89 (110)
210 pfam04816 DUF633 Family of unk 87.3 2.3 5.9E-05 22.1 7.1 109 40-171 1-121 (204)
211 PRK10309 galactitol-1-phosphat 87.2 2.4 6E-05 22.1 6.9 95 32-133 156-261 (347)
212 COG1063 Tdh Threonine dehydrog 86.9 2.5 6.3E-05 22.0 6.8 134 34-173 166-320 (350)
213 TIGR02817 adh_fam_1 zinc-bindi 86.7 2.5 6.4E-05 21.9 7.7 166 22-195 135-326 (338)
214 KOG2187 consensus 86.4 2.4 6E-05 22.1 5.7 64 9-74 358-422 (534)
215 COG4076 Predicted RNA methylas 86.1 2.7 6.9E-05 21.8 7.5 93 35-129 31-132 (252)
216 TIGR03201 dearomat_had 6-hydro 85.9 1.8 4.7E-05 22.7 4.9 98 33-134 163-274 (349)
217 KOG3115 consensus 85.5 1.8 4.7E-05 22.7 4.8 96 38-133 62-184 (249)
218 pfam07091 FmrO Ribosomal RNA m 84.8 3.1 8E-05 21.4 6.3 129 36-173 102-240 (248)
219 pfam10237 N6-adenineMlase Prob 83.4 3.6 9.2E-05 21.0 7.0 112 10-134 5-124 (161)
220 KOG2793 consensus 82.9 3.4 8.8E-05 21.2 5.2 100 37-136 87-203 (248)
221 pfam06962 rRNA_methylase Putat 82.7 3.2 8.1E-05 21.4 5.0 71 79-169 47-117 (140)
222 PRK09422 alcohol dehydrogenase 81.8 4.2 0.00011 20.7 6.0 96 32-134 158-263 (338)
223 pfam01795 Methyltransf_5 MraW 79.7 2 5.1E-05 22.5 3.1 24 111-134 220-243 (310)
224 pfam01555 N6_N4_Mtase DNA meth 78.7 2.1 5.4E-05 22.3 3.0 30 106-135 27-56 (221)
225 COG0275 Predicted S-adenosylme 78.4 2.2 5.7E-05 22.2 3.0 24 111-134 223-246 (314)
226 pfam07757 AdoMet_MTase Predict 78.0 2.2 5.6E-05 22.3 2.9 42 24-65 42-88 (112)
227 COG2384 Predicted SAM-dependen 76.6 6.1 0.00016 19.7 8.4 113 36-170 16-139 (226)
228 PRK00050 mraW S-adenosyl-methy 76.1 2.2 5.7E-05 22.2 2.5 41 32-72 19-63 (309)
229 COG1565 Uncharacterized conser 75.9 4.4 0.00011 20.6 4.0 44 10-53 47-94 (370)
230 pfam05185 PRMT5 PRMT5 arginine 75.1 6.7 0.00017 19.5 8.5 108 20-128 166-293 (447)
231 TIGR00446 nop2p NOL1/NOP2/sun 74.4 7 0.00018 19.4 7.3 118 16-133 54-214 (284)
232 TIGR00006 TIGR00006 S-adenosyl 74.1 3.1 7.9E-05 21.4 2.8 26 109-134 228-253 (323)
233 TIGR00563 rsmB ribosomal RNA s 70.1 8.9 0.00023 18.8 7.8 114 20-133 255-409 (487)
234 PRK06522 2-dehydropantoate 2-r 67.1 10 0.00026 18.4 6.3 96 38-137 1-106 (307)
235 PRK03369 murD UDP-N-acetylmura 67.0 8.8 0.00023 18.8 3.9 71 33-106 8-81 (487)
236 pfam04989 CmcI Cephalosporin h 66.7 10 0.00027 18.4 6.6 140 29-172 25-184 (202)
237 KOG1253 consensus 66.4 8.8 0.00022 18.8 3.8 103 36-142 109-226 (525)
238 KOG2651 consensus 65.9 10 0.00026 18.5 4.0 35 35-69 152-187 (476)
239 pfam09832 DUF2059 Uncharacteri 61.8 11 0.00027 18.4 3.5 26 4-29 50-75 (92)
240 PRK12921 2-dehydropantoate 2-r 60.9 14 0.00034 17.8 5.9 99 38-140 1-109 (306)
241 PRK05708 2-dehydropantoate 2-r 60.2 14 0.00035 17.7 7.4 94 38-136 3-107 (305)
242 COG1743 Adenine-specific DNA m 59.8 14 0.00036 17.7 7.6 84 105-216 561-645 (875)
243 pfam02558 ApbA Ketopantoate re 58.6 15 0.00038 17.5 4.4 92 41-136 2-103 (150)
244 PRK10201 G/U mismatch-specific 55.9 16 0.00041 17.3 3.6 27 120-147 4-30 (168)
245 COG4262 Predicted spermidine s 53.9 18 0.00046 17.1 7.8 117 35-169 287-431 (508)
246 COG5379 BtaA S-adenosylmethion 53.2 18 0.00047 17.0 6.4 38 93-130 325-364 (414)
247 PRK01438 murD UDP-N-acetylmura 53.2 18 0.00047 17.0 5.0 107 27-137 4-134 (481)
248 PRK10754 quinone oxidoreductas 53.0 18 0.00047 17.0 7.8 101 27-134 131-241 (327)
249 TIGR01281 DPOR_bchL light-inde 50.8 8 0.0002 19.1 1.4 19 35-53 26-44 (275)
250 PRK11727 putative SAM-dependen 48.9 16 0.0004 17.4 2.6 87 33-121 114-216 (326)
251 TIGR00478 tly hemolysin A; Int 47.5 23 0.00058 16.5 7.9 145 27-174 68-229 (240)
252 PRK08229 2-dehydropantoate 2-r 47.4 23 0.00058 16.5 6.0 131 38-172 3-175 (341)
253 TIGR01082 murC UDP-N-acetylmur 46.8 23 0.00059 16.4 3.4 15 116-130 208-222 (491)
254 smart00829 PKS_ER Enoylreducta 45.4 24 0.00062 16.3 6.6 98 28-132 96-205 (288)
255 TIGR02143 trmA_only tRNA (urac 42.9 25 0.00064 16.2 2.9 136 13-165 181-331 (361)
256 pfam07090 DUF1355 Protein of u 42.7 20 0.00051 16.8 2.4 78 43-133 27-115 (183)
257 TIGR01177 TIGR01177 conserved 42.6 27 0.00069 16.0 6.5 121 24-144 191-334 (358)
258 PRK02472 murD UDP-N-acetylmura 42.1 24 0.00061 16.4 2.7 35 31-65 3-39 (450)
259 pfam05430 DUF752 Protein of un 41.9 28 0.00071 16.0 8.0 100 25-174 8-111 (124)
260 COG1062 AdhC Zn-dependent alco 41.1 29 0.00073 15.9 7.0 134 32-172 181-337 (366)
261 KOG0822 consensus 39.8 30 0.00077 15.8 7.2 126 3-128 330-474 (649)
262 COG3184 Uncharacterized protei 39.2 18 0.00046 17.0 1.7 58 96-164 59-119 (183)
263 KOG1501 consensus 38.9 31 0.00079 15.7 4.0 107 20-126 48-168 (636)
264 cd04883 ACT_AcuB C-terminal AC 34.9 17 0.00043 17.2 0.9 62 108-170 8-69 (72)
265 TIGR01743 purR_Bsub pur operon 33.8 5.5 0.00014 20.0 -1.7 14 90-103 123-136 (269)
266 PRK07502 cyclohexadienyl dehyd 32.5 40 0.001 15.1 5.6 85 38-128 7-96 (307)
267 PRK06249 2-dehydropantoate 2-r 32.0 40 0.001 15.1 5.9 92 37-137 5-110 (313)
268 COG4422 Bacteriophage protein 31.9 35 0.00089 15.4 2.2 92 30-125 12-111 (250)
269 TIGR01169 rplA_bact ribosomal 30.3 26 0.00066 16.2 1.3 110 79-210 89-208 (227)
270 PHA02056 putative methyltransf 29.6 45 0.0011 14.8 4.7 128 37-170 65-210 (279)
271 pfam06557 DUF1122 Protein of u 29.3 45 0.0011 14.8 5.0 60 112-180 66-126 (170)
272 pfam06618 DUF1148 Protein of u 29.3 28 0.00072 15.9 1.4 36 122-157 5-40 (114)
273 pfam06816 NOD NOTCH protein. N 26.5 38 0.00097 15.2 1.6 38 91-128 4-41 (56)
274 pfam05971 Methyltransf_10 Prot 26.3 51 0.0013 14.5 3.5 97 22-120 50-163 (254)
275 PRK01390 murD UDP-N-acetylmura 25.8 52 0.0013 14.4 3.9 37 32-68 4-43 (457)
276 COG4301 Uncharacterized conser 24.5 55 0.0014 14.3 7.5 125 5-134 50-195 (321)
277 cd05213 NAD_bind_Glutamyl_tRNA 24.4 56 0.0014 14.3 5.8 131 26-163 167-301 (311)
278 PRK04148 hypothetical protein; 21.6 63 0.0016 13.9 5.7 95 23-122 3-101 (135)
279 pfam00107 ADH_zinc_N Zinc-bind 21.1 65 0.0017 13.9 5.5 35 94-134 58-92 (131)
280 TIGR00507 aroE shikimate 5-deh 20.2 68 0.0017 13.8 6.0 106 28-136 111-230 (286)
281 TIGR02727 MTHFS_bact 5,10-meth 20.0 44 0.0011 14.8 0.9 12 44-55 134-145 (183)
No 1
>PRK05134 3-demethylubiquinone-9 3-methyltransferase; Provisional
Probab=99.94 E-value=2e-25 Score=165.17 Aligned_cols=177 Identities=15% Similarity=0.134 Sum_probs=133.9
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC-CCEEEEEECHHHHHHHHHC-----CCCCEEEECHHHC-CCCCCCCC
Q ss_conf 999997501048975999653881113553123-8748873058999832311-----6862365333656-77547202
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV-ERTLAFMPAGQGATNWPDQ-----YFSSTALVSEGNL-PLADSSVD 97 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~L-Pf~~~sfD 97 (242)
-+.+.+.+....|.+|||+|||.|.+.+.+++. ..++++|++......++.. ......+++.+++ ++.+++||
T Consensus 37 ~~~i~~~~~~l~G~~ILDVGCGgG~lse~LAr~Ga~VtGID~S~~~I~~Ar~ha~~~~l~i~y~~~~~e~l~~~~~~~FD 116 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGATVTGIDASEENIEVARLHALESGLKIDYRQITAEELAAEHPGQFD 116 (233)
T ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHCCCCEE
T ss_conf 99999751466899899975589711289996799799987998999999998564434511675147665430578634
Q ss_pred CHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHH---------HHHHCCCC---CCCCCCHHHHHHHHHHC
Q ss_conf 0022024775229999999999846999889997338774034---------56532766---56557888999999962
Q gi|254780582|r 98 CVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWA---------RMEHTPFG---SGQPYSWYQMISLLREA 165 (242)
Q Consensus 98 ~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~---------~~~~~~~~---~~r~~~~~~l~~~l~~~ 165 (242)
+|+|+++|||++||.++++|+.|+|||||.+++++.|+--.-- ..+..|.+ ...|..|.+|.++++..
T Consensus 117 vV~~~EVlEHV~d~~~~l~~~~rlLKPGG~l~lsTiNrt~~S~l~~i~~AEyil~~vP~gTH~w~kFi~P~el~~~l~~~ 196 (233)
T PRK05134 117 VVTCMEMLEHVPDPASFIRACAKLVKPGGLVFFSTLNRNLKSYLLAIVGAEYILRMLPKGTHDYKKFIKPSELAAWLRQA 196 (233)
T ss_pred EEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHC
T ss_conf 77442147753899999999999738991499972678989999999999888604999985866679999999999987
Q ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEE
Q ss_conf 87621257898308655246763158999999761132143899999975
Q gi|254780582|r 166 NFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKI 215 (242)
Q Consensus 166 gf~~~~~~~~~~~pp~~~~~~~~~~~~~e~~~~~~~p~~g~~~~i~a~K~ 215 (242)
|+++.......|.|-.....+ .....-=|++.|+|.
T Consensus 197 ~~~~~~~~G~~ynp~~~~w~~--------------~~~~~vNY~~~~~K~ 232 (233)
T PRK05134 197 GLEVQDIKGLTYNPLTNRWKL--------------SDDVDVNYMLAARKP 232 (233)
T ss_pred CCEEEEEEEEEEECCCCEEEE--------------CCCCCCCEEEEEECC
T ss_conf 995721000799656793898--------------899981458998718
No 2
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.92 E-value=3.2e-24 Score=158.28 Aligned_cols=162 Identities=12% Similarity=0.077 Sum_probs=129.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHCCCC-CEEEECHHHCCCCCCC
Q ss_conf 999999999999750104897599965388111355312-38748873058999832311686-2365333656775472
Q gi|254780582|r 18 KCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQYFS-STALVSEGNLPLADSS 95 (242)
Q Consensus 18 ~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~LPf~~~s 95 (242)
..+++.+.+.|.+.++...+.+|||+|||+|.+...+.. ....+++|.+..++......... ..+++|.|.|||+++|
T Consensus 24 A~~Q~~~a~~Ll~~l~~~~~~~vLDlGcGtG~~t~~l~~~~~~v~~~Dls~~Ml~~a~~~~~~~~~~~~D~e~Lp~~~~s 103 (251)
T PRK10258 24 ADLQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATAT 103 (251)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCHHHHHCHHHHCCCCCCC
T ss_conf 69999999999973665789939998310027899999749969999598999999987486334353606309998788
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH----CCCCC-CCCCCHHHHHHHHHHCCCCCE
Q ss_conf 0200220247752299999999998469998899973387740345653----27665-655788899999996287621
Q gi|254780582|r 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEH----TPFGS-GQPYSWYQMISLLREANFTLS 170 (242)
Q Consensus 96 fD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~----~~~~~-~r~~~~~~l~~~l~~~gf~~~ 170 (242)
||+|+++.+|++++||..+|+|+.|||||||.+++++|-+.++..++.. ....| .++.+..++.+++...+++..
T Consensus 104 fDli~S~~~lqW~~d~~~~l~e~~rvLkPgG~l~fst~g~~tl~ELr~a~~~vd~~~h~~~f~~~~~~~~~l~~~~~~~~ 183 (251)
T PRK10258 104 FDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGVRYQHH 183 (251)
T ss_pred CCEEEECCCHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 21785504045259999999999964589949999815757689999999983167766788999999999862666246
Q ss_pred EEEEEEEEC
Q ss_conf 257898308
Q gi|254780582|r 171 ITSRSLFFP 179 (242)
Q Consensus 171 ~~~~~~~~p 179 (242)
.....++++
T Consensus 184 ~~~~~l~f~ 192 (251)
T PRK10258 184 IQPITLWFD 192 (251)
T ss_pred EEEEEEECC
T ss_conf 678999759
No 3
>PRK08317 hypothetical protein; Provisional
Probab=99.92 E-value=1.1e-23 Score=155.17 Aligned_cols=156 Identities=20% Similarity=0.118 Sum_probs=118.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHC-----CCCCEEEECHHHCCCC
Q ss_conf 99999999750104897599965388111355312----38748873058999832311-----6862365333656775
Q gi|254780582|r 22 DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQ-----YFSSTALVSEGNLPLA 92 (242)
Q Consensus 22 ~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~LPf~ 92 (242)
+..++.+.+.+...+|.+|||+|||+|.+...+.+ ..+++++|.+..++...+.. .....+++|.+++||+
T Consensus 5 ~~~r~~~l~~L~l~pG~~vLDiGcG~G~~~~~la~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~lp~~ 84 (241)
T PRK08317 5 RRYRARTFELLAVQPGERVLDVGCGPGNDLRELADRVGPEGRVVGIDRSEAMLALARERAAGLLSNVEFVRGDADGLPFP 84 (241)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCHHHCCCC
T ss_conf 89999999736999979999966417499999999749997899996988999999999862289649995546435898
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCC-HH-----HHHH---C-CCCCCCCCCHHHHHHHH
Q ss_conf 4720200220247752299999999998469998899973387740-34-----5653---2-76656557888999999
Q gi|254780582|r 93 DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM-WA-----RMEH---T-PFGSGQPYSWYQMISLL 162 (242)
Q Consensus 93 ~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~-w~-----~~~~---~-~~~~~r~~~~~~l~~~l 162 (242)
++|||.|++..+|||++||.++|+|+.|||||||+++++-+...+. |. +.+. . --..+...-.++|..+|
T Consensus 85 d~sfD~v~~~~~l~h~~d~~~~l~e~~RvLkPGG~~vi~d~Dw~~~~~~~~~~~~~~~i~~~~~~~~~~~~~gr~L~~~l 164 (241)
T PRK08317 85 DESFDAVRSDRVLQHLEDPRRALAEMARVLRPGGRAVVLDTDWDTLVIHSGDRALMRKILNFWSDHFANPWLGRRLPGLF 164 (241)
T ss_pred CCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 88704562211576225899999999998188838999966788674289888999999999997478920789999999
Q ss_pred HHCCCCCEEEEEEEE
Q ss_conf 962876212578983
Q gi|254780582|r 163 REANFTLSITSRSLF 177 (242)
Q Consensus 163 ~~~gf~~~~~~~~~~ 177 (242)
+++||..+..+...+
T Consensus 165 ~~aG~~~v~~~~~~~ 179 (241)
T PRK08317 165 REAGLTDIEVEPYTL 179 (241)
T ss_pred HHCCCCEEEEEEEEE
T ss_conf 986990568888778
No 4
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase; InterPro: IPR010233 This entry represents an O-methyltransferase, which is believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and mitochondria (COQ3) , . A separate methylase (MenG/UbiE) catalyses the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.; GO: 0008425 2-polyprenyl-6-methoxy-14-benzoquinone methyltransferase activity, 0006744 ubiquinone biosynthetic process.
Probab=99.92 E-value=1.4e-24 Score=160.24 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=122.4
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC-CC-EEEEEECHHHHHHHHHCC----C-------CCEEEECHHHCCCC
Q ss_conf 99997501048975999653881113553123-87-488730589998323116----8-------62365333656775
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV-ER-TLAFMPAGQGATNWPDQY----F-------SSTALVSEGNLPLA 92 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~----~-------~~~~~~d~~~LPf~ 92 (242)
+.++.-+.+..|.+|||||||.|.+++-+++. .. ++|+|.+.+.+..++... - ....+.+.|+|.=+
T Consensus 74 E~~~~~~~~~~G~~vLDVGCGGGlLsE~lAR~Ga~~V~GID~~~~~i~~Ak~Ha~~~~~~~~~~K~i~Y~~~~~E~l~~~ 153 (275)
T TIGR01983 74 ESIRDELLKDSGLRVLDVGCGGGLLSEPLARLGANKVTGIDASEENIEVAKLHAKKDPLQEALDKKIEYRCTSVEELAEE 153 (275)
T ss_pred HHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 56776341178977998427857888999755884257752117799999988873340233111145444307887305
Q ss_pred ---CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCC-HH--------HHHHCCCC---CCCCCCHHH
Q ss_conf ---4720200220247752299999999998469998899973387740-34--------56532766---565578889
Q gi|254780582|r 93 ---DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM-WA--------RMEHTPFG---SGQPYSWYQ 157 (242)
Q Consensus 93 ---~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~-w~--------~~~~~~~~---~~r~~~~~~ 157 (242)
..+||+|+|+.+||||+||.++|+.+...|||||.++|++-||--. |. -.++.|-| ...|.+|.+
T Consensus 154 ~h~~~~FD~V~~mEvlEHV~dp~~f~~~c~~llkPgG~lF~STINRt~kS~~~aIvgAEYiLr~vPKGTH~~~KFi~P~E 233 (275)
T TIGR01983 154 QHTKKSFDVVTCMEVLEHVPDPQAFIKACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRWVPKGTHDWEKFIKPSE 233 (275)
T ss_pred CCCCCCCCEEEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHH
T ss_conf 57841573376432000027888999999985089984897300021899999999999985168987247101538799
Q ss_pred HHHHHH----HCCCCCEEEEEEEEECCCCC
Q ss_conf 999999----62876212578983086552
Q gi|254780582|r 158 MISLLR----EANFTLSITSRSLFFPPTHK 183 (242)
Q Consensus 158 l~~~l~----~~gf~~~~~~~~~~~pp~~~ 183 (242)
|.+||+ ++++++..+....|.|-.+.
T Consensus 234 L~~~l~d~N~~~~l~~~~~~G~~YnP~~~~ 263 (275)
T TIGR01983 234 LTSWLEDDNRSAGLRVKDVKGLVYNPIKNE 263 (275)
T ss_pred HHHHHHHCCCCCCEEEEEECCEEEEECCCE
T ss_conf 999985126467648997505076301386
No 5
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.91 E-value=4.1e-24 Score=157.67 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=116.6
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHC-------CCCCEEEECHHHCC
Q ss_conf 99999999750104897599965388111355312----38748873058999832311-------68623653336567
Q gi|254780582|r 22 DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQ-------YFSSTALVSEGNLP 90 (242)
Q Consensus 22 ~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~LP 90 (242)
+.-++.+.+.+...+|.+|||+|||+|.+...+.+ ...++++|++..++..+.+. .....+++|.++||
T Consensus 37 ~~Wr~~~v~~l~~~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lp 116 (239)
T PRK00216 37 RVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALP 116 (239)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
T ss_conf 99999999862789999898845776387999999729976799991988999999999997389888507982355688
Q ss_pred CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHH-----H--HHCC------------CC--
Q ss_conf 75472020022024775229999999999846999889997338774-0345-----6--5327------------66--
Q gi|254780582|r 91 LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRG-MWAR-----M--EHTP------------FG-- 148 (242)
Q Consensus 91 f~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s-~w~~-----~--~~~~------------~~-- 148 (242)
|+|+|||+|++..+|.|++|+.++|+|++|||||||+++|..+.... .|-. + .-.| +.
T Consensus 117 f~d~sfD~v~~~f~l~~~~d~~~~l~E~~RVLkPGG~l~ilefs~p~~~~~~~~y~~Y~~~ilP~ig~~~~~~~~aY~YL 196 (239)
T PRK00216 117 FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLVSKNAEAYRYL 196 (239)
T ss_pred CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 87666765002615671486799999999876648089999758999768899999999999999999971987888769
Q ss_pred ---CCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf ---56557888999999962876212578
Q gi|254780582|r 149 ---SGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 149 ---~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
-.++.++.++.+.|+++||+...++.
T Consensus 197 ~~Si~~fp~~~~~~~~l~~aGF~~v~~~~ 225 (239)
T PRK00216 197 AESIRAFPDQEELAAMMEEAGFERVKYRN 225 (239)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCEEEEEE
T ss_conf 99999888999999999987996788998
No 6
>pfam01209 Ubie_methyltran ubiE/COQ5 methyltransferase family.
Probab=99.90 E-value=3.9e-23 Score=152.06 Aligned_cols=154 Identities=15% Similarity=0.092 Sum_probs=117.2
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH----CCCCEEEEEECHHHHHHHHHCC------CCCEEEECHHHCCC
Q ss_conf 9999999975010489759996538811135531----2387488730589998323116------86236533365677
Q gi|254780582|r 22 DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG----KVERTLAFMPAGQGATNWPDQY------FSSTALVSEGNLPL 91 (242)
Q Consensus 22 ~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~~LPf 91 (242)
+.-++.+.+.+...+|.+|||+|||+|.....+. .....+++|.+..++....... ....+++|.++|||
T Consensus 33 ~~WR~~~v~~~~~~~g~~vLDl~cGTG~~~~~l~~~~~~~~~v~gvD~S~~ML~~a~~k~~~~~~~~i~~~~~da~~lpf 112 (233)
T pfam01209 33 RLWKDFTMKCMGVKRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYNIEFLQGNAEELPF 112 (233)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCC
T ss_conf 99999999861899999899825405889999999849997499996999999999999985699983699821666886
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCC-CCHHH-----HHH--CC------------CCC--
Q ss_conf 547202002202477522999999999984699988999733877-40345-----653--27------------665--
Q gi|254780582|r 92 ADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKR-GMWAR-----MEH--TP------------FGS-- 149 (242)
Q Consensus 92 ~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~-s~w~~-----~~~--~~------------~~~-- 149 (242)
+|+|||+|++..+|.+++|+..+|+|++|||||||+++|..+... +.|-+ +-+ .| +.+
T Consensus 113 ~d~sfD~v~~~fglrn~~d~~~al~E~~RVLKPGG~l~ilefs~P~~~~~~~~~~~Y~~~ilP~ig~~~~~~~~aY~YL~ 192 (233)
T pfam01209 113 EDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQAYELYFKYVMPFMGKMFAKSYKSYQYLQ 192 (233)
T ss_pred CCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 66565731421012125888999999998727897899997888877799999999995359997799849989985199
Q ss_pred ---CCCCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf ---65578889999999628762125789
Q gi|254780582|r 150 ---GQPYSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 150 ---~r~~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
.++.++.++.+.|+++||+..+++..
T Consensus 193 ~Si~~fp~~~~~~~~l~~~GF~~v~~~~l 221 (233)
T pfam01209 193 ESIRDFPDQKTLASMFEKAGFKSVGYESL 221 (233)
T ss_pred HHHHHCCCHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99998799999999999879977789987
No 7
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.88 E-value=3.7e-22 Score=146.47 Aligned_cols=151 Identities=18% Similarity=0.159 Sum_probs=112.2
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHCCCC------CEEEECHHHCCCCC
Q ss_conf 99999997501048975999653881113553123---8748873058999832311686------23653336567754
Q gi|254780582|r 23 AISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQYFS------STALVSEGNLPLAD 93 (242)
Q Consensus 23 ~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------~~~~~d~~~LPf~~ 93 (242)
.-++.+...+...+|.++||+|||+|.....+.+. ..++++|.++.++......... ..+.+|+++|||+|
T Consensus 38 ~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D 117 (238)
T COG2226 38 LWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD 117 (238)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEEEECHHHCCCCC
T ss_conf 99999998607899987999668731999999996588449999799999999998743247663279970565498888
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHH---------HHHHCCC-CC--------------
Q ss_conf 72020022024775229999999999846999889997338774034---------5653276-65--------------
Q gi|254780582|r 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWA---------RMEHTPF-GS-------------- 149 (242)
Q Consensus 94 ~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~---------~~~~~~~-~~-------------- 149 (242)
+|||+|.+.+.|.+++|+..+|+|+.|||||||+++++-++....+. .....|. ++
T Consensus 118 ~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~e 197 (238)
T COG2226 118 NSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAE 197 (238)
T ss_pred CCCCEEEEEEHHHCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCEEEECCHHHHHHHHH
T ss_conf 76588986512352787899999998762687499998768998601699999999974765621211068499999998
Q ss_pred --CCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf --655788899999996287621257
Q gi|254780582|r 150 --GQPYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 150 --~r~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
.++.+..++..++..+||+...++
T Consensus 198 Si~~~p~~~~l~~~~~~~gf~~i~~~ 223 (238)
T COG2226 198 SIRRFPDQEELKQMIEKAGFEEVRYE 223 (238)
T ss_pred HHHHCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 88858998999999986684687667
No 8
>PRK11036 putative metallothionein SmtA; Provisional
Probab=99.87 E-value=9e-21 Score=138.57 Aligned_cols=206 Identities=16% Similarity=0.188 Sum_probs=141.8
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCC--CEEEEECCCCCHHHHHHHCCCCE-EEEEECHHHHHHHHHCCC-------
Q ss_conf 99612889899999999999975010489--75999653881113553123874-887305899983231168-------
Q gi|254780582|r 9 RQFYSSFLGKCTTDAISKVLSTTWDDVTG--CRLLGLGYAIPFFSCFHGKVERT-LAFMPAGQGATNWPDQYF------- 78 (242)
Q Consensus 9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g--~~vLdiGcg~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------- 78 (242)
++=|.|..|+.=...+++.|.++++...+ .+|||+|||+|.++..+...++. +.+|+|++++...+....
T Consensus 15 ~~iYgt~KG~iR~avl~~dl~~~l~~l~~~plrVLDvG~G~G~~a~~lA~~Gh~Vt~~D~S~~mL~~A~~~a~~~gv~~~ 94 (256)
T PRK11036 15 RNIYGTTKGQIRQAIVWQDLDRLLAELGPRPLRVLDAGGGEGQTAIKMAELGHQVTLCDLSAEMIQRAKQAAEAKGVSDN 94 (256)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCE
T ss_conf 84547772289999999999999984699998399837987798999997799799866999999999999886496612
Q ss_pred CCEEEECHHHCC-CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH------HH---HC---
Q ss_conf 623653336567-754720200220247752299999999998469998899973387740345------65---32---
Q gi|254780582|r 79 SSTALVSEGNLP-LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR------ME---HT--- 145 (242)
Q Consensus 79 ~~~~~~d~~~LP-f~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~------~~---~~--- 145 (242)
...+.++.++++ ..+++||+|+|+.||||++||..+|+++.++|||||.|=++.+|+.++--+ ++ ..
T Consensus 95 ~~~v~~~~q~l~~~~~~~fDlVlcHaVLE~v~dP~~~l~~l~~~lkPGG~lSLmfyN~~alv~~n~l~Gnf~~a~~~~~~ 174 (256)
T PRK11036 95 MQFIHCAAQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFDYVQAGMPK 174 (256)
T ss_pred EEEEECCHHHHHHHCCCCCCEEEEEHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHCCHHHHHHHCCC
T ss_conf 79885689988542368866786513677237899999999997589937999842851699999982589999730634
Q ss_pred ----CCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE----EECCCCC-HHHHHHHHHHHHHHHHHHHHC--CEEEEEEEEE
Q ss_conf ----7665655788899999996287621257898----3086552-467631589999997611321--4389999997
Q gi|254780582|r 146 ----PFGSGQPYSWYQMISLLREANFTLSITSRSL----FFPPTHK-KCILKLWSVFEKIGNIFGPGF--AGIYVIEARK 214 (242)
Q Consensus 146 ----~~~~~r~~~~~~l~~~l~~~gf~~~~~~~~~----~~pp~~~-~~~~~~~~~~e~~~~~~~p~~--g~~~~i~a~K 214 (242)
...-.++..+.++.+|++.+||++..+...- |.+.-.. ..+....--+|..-.+-.|+. |-++=+.|+|
T Consensus 175 ~~~~~LtP~~p~~p~~V~~~l~~~g~~i~~~~GIRvF~Dy~~~~~~~~~~~e~Ll~lE~~~~~~~PYr~lgry~Hv~ark 254 (256)
T PRK11036 175 RKKRTLSPQYPRDPAQVYQWLEEAGWQIMGKTGVRVFHDYLRNKHQQRDCYEALLELETRYCRQEPYISLGRYIHVTARK 254 (256)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHEEEC
T ss_conf 45521689999999999999997798277667899976056775558640999999999973798377788887620217
No 9
>TIGR02072 BioC biotin biosynthesis protein BioC; InterPro: IPR011814 This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulphur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.; GO: 0009102 biotin biosynthetic process.
Probab=99.85 E-value=2.4e-20 Score=136.17 Aligned_cols=166 Identities=17% Similarity=0.124 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHHCCC-----CCCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHCCC----------C
Q ss_conf 99999999999975010-----489759996538811135531238---74887305899983231168----------6
Q gi|254780582|r 18 KCTTDAISKVLSTTWDD-----VTGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQYF----------S 79 (242)
Q Consensus 18 ~~~~~~~~~~l~~~l~~-----~~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----------~ 79 (242)
..+++.+...|.++++. ....+|||+|||||+++..+.+.. +.++.|.+..+......... .
T Consensus 13 A~~Qr~~~~~Ll~~L~~~~~~~~~~~~vLd~GcGTG~~t~~l~~~~~~~~~~a~D~~~~ml~~a~~~~~~GWW~~~~~~~ 92 (272)
T TIGR02072 13 AKIQREMAKRLLALLKEKRPSHFEPASVLDIGCGTGYLTRALLKRFPQAELIALDISEEMLAQAKEKLSEGWWQKNLKAV 92 (272)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCEEHHHHCCHHHHHHHHHHCCCCCCCCCCHHH
T ss_conf 79999999999998874076544554356512685489999998688001233332567899999744678865760456
Q ss_pred CEEEECHHHCCCCCCC--CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHC---------CCC
Q ss_conf 2365333656775472--02002202477522999999999984699988999733877403456532---------766
Q gi|254780582|r 80 STALVSEGNLPLADSS--VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHT---------PFG 148 (242)
Q Consensus 80 ~~~~~d~~~LPf~~~s--fD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~---------~~~ 148 (242)
..+++|.|.+|+.+++ ||+|++.-++.++.||.++|+|+.|+|||||.|++++|-+.++--++... ...
T Consensus 93 ~f~~gD~E~l~~~~~~~~~DLI~Sn~a~QW~~~~~~~l~~l~~~lk~gG~l~FStf~~~~l~El~~~~~~~~~~ID~~~~ 172 (272)
T TIGR02072 93 QFICGDIEKLPLEDSSFKFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLKELRQSFGQVSELIDERSH 172 (272)
T ss_pred HHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 66663777178876630341275635887104788999999975287968998613541349999999999974076546
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCC
Q ss_conf 56557888999999962876212578983086552
Q gi|254780582|r 149 SGQPYSWYQMISLLREANFTLSITSRSLFFPPTHK 183 (242)
Q Consensus 149 ~~r~~~~~~l~~~l~~~gf~~~~~~~~~~~pp~~~ 183 (242)
--++.+..++.++|+..||+...++...+.--+..
T Consensus 173 ~~~y~~~~~~~~~l~~~~f~~~~~~~~~~~l~F~~ 207 (272)
T TIGR02072 173 GLRYLSLDELKALLKNDGFELLKLEEELITLSFDD 207 (272)
T ss_pred CCCCCCHHHHHHHHHHCCCCEEEEEEEEEEECCCC
T ss_conf 78998989999998615984157888656523578
No 10
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.85 E-value=5e-21 Score=140.04 Aligned_cols=141 Identities=20% Similarity=0.184 Sum_probs=107.0
Q ss_pred CCCCCEEEEECCCCCHHHHHHH----CCCCEEEEEECHHHHHHHHHCC------CCCEEEECHHHCCCCCCCCCCHHHHH
Q ss_conf 0489759996538811135531----2387488730589998323116------86236533365677547202002202
Q gi|254780582|r 34 DVTGCRLLGLGYAIPFFSCFHG----KVERTLAFMPAGQGATNWPDQY------FSSTALVSEGNLPLADSSVDCVLMVH 103 (242)
Q Consensus 34 ~~~g~~vLdiGcg~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~d~~~LPf~~~sfD~Vi~~h 103 (242)
..+|.+|||+|||+|......+ ..++++++|.++.|+...++.. .....++|.++|||+|+|||+|++..
T Consensus 71 l~pGe~VLDLGcG~G~d~~~aA~~VG~~G~ViGVD~s~~ML~~Ar~~a~~~G~~NVeF~~Gdae~LPl~D~SfDvViSnc 150 (258)
T PRK11873 71 LKPGETVLDLGSGAGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADGSVDVIISNC 150 (258)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCEEEEEECC
T ss_conf 79999899947887775999999869997799985999999999999997599755999955531368988351998824
Q ss_pred HHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCC---CCHHHHHHCC-CCC-CCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 477522999999999984699988999733877---4034565327-665-6557888999999962876212578
Q gi|254780582|r 104 YLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKR---GMWARMEHTP-FGS-GQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 104 ~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~---s~w~~~~~~~-~~~-~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
+|.|++|+.++|+|++|||||||+++|+-.--. ..+-+.+... .++ +-..+...+.++|+.+||+-..+..
T Consensus 151 Vlnl~pDk~~vl~E~~RVLKPGGRl~ISDiv~~~~lP~~~r~d~~l~~~CiaGA~~~~~~~~~l~~aGF~~i~i~~ 226 (258)
T PRK11873 151 VINLSPDKERVFREAFRVLKPGGRFAISDVVLTGELPEELRNDAALYAGCVAGALSVEEYLAMLAEAGFVDITIEP 226 (258)
T ss_pred EEECCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHCHHHHHCCCCCCCCHHHHHHHHHHCCCCCEEEEE
T ss_conf 6760798799999999962889789999741277799999859898731203668599999999976998329985
No 11
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities . Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity.
Probab=99.85 E-value=6.3e-21 Score=139.45 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=113.3
Q ss_pred CCCCCEEEEECCCCCHHHHHHHC-C-----------CCEEEEEECHHHHHHHHHCCC----------CCEEEECHHHCCC
Q ss_conf 04897599965388111355312-3-----------874887305899983231168----------6236533365677
Q gi|254780582|r 34 DVTGCRLLGLGYAIPFFSCFHGK-V-----------ERTLAFMPAGQGATNWPDQYF----------SSTALVSEGNLPL 91 (242)
Q Consensus 34 ~~~g~~vLdiGcg~g~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~d~~~LPf 91 (242)
...+.++||+=||||.....+.+ . ..+++.|++++|+....+... ...+++|+++|||
T Consensus 41 ~k~~~~~LDvA~GTGD~a~~~~k~~~~~~~a~~~~~~~vtg~D~S~~ML~~a~kk~~~~~r~~~~~~~~f~~~dA~~LPF 120 (242)
T TIGR01934 41 GKKGQKVLDVACGTGDLAIELAKKAGKVGKAAETERAKVTGVDFSEEMLEVAKKKAPNEERKALSANVSFIEADAEALPF 120 (242)
T ss_pred CCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHEECHHHCCCC
T ss_conf 88889778872383999999986357555335776337898707988999998741342003332164211000550879
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHHHH--H----C--C-C--------------
Q ss_conf 54720200220247752299999999998469998899973387740-34565--3----2--7-6--------------
Q gi|254780582|r 92 ADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM-WARME--H----T--P-F-------------- 147 (242)
Q Consensus 92 ~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~-w~~~~--~----~--~-~-------------- 147 (242)
+|+|||+|.+...|=-+.|..++|+|++|||||||+|+|+.|-+... +-... . . | .
T Consensus 121 ~D~sFD~~TiaFGlRN~~d~~~aL~E~~RVLKpgG~l~iLEf~~P~~~~~~~~~Y~~Y~~~v~P~~G~~~s~~~~aY~YL 200 (242)
T TIGR01934 121 EDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANGAFLKKFYKFYLKNVLPSIGGLISKNKEAYEYL 200 (242)
T ss_pred CCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHH
T ss_conf 98624446640255474686789877311018898799840786764168899999885000377777740788665778
Q ss_pred --CCCCCCCHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf --656557888999999962876212578983
Q gi|254780582|r 148 --GSGQPYSWYQMISLLREANFTLSITSRSLF 177 (242)
Q Consensus 148 --~~~r~~~~~~l~~~l~~~gf~~~~~~~~~~ 177 (242)
.=.+|.+..++.+.++++||+..+++...|
T Consensus 201 ~eSi~~FP~~~~l~~~~~~aGF~~~~~~~l~f 232 (242)
T TIGR01934 201 PESIRAFPSQEELAAMLKEAGFEEVRYRSLTF 232 (242)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCEEECCCHH
T ss_conf 89987538988999999973863211003035
No 12
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.85 E-value=3.5e-20 Score=135.23 Aligned_cols=177 Identities=14% Similarity=0.139 Sum_probs=121.0
Q ss_pred CEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHC-------CCCCEEEECHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 75999653881113553123---8748873058999832311-------6862365333656775472020022024775
Q gi|254780582|r 38 CRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQ-------YFSSTALVSEGNLPLADSSVDCVLMVHYLEF 107 (242)
Q Consensus 38 ~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~ 107 (242)
++|||+|||+|.....+... ...++++.++.++...... .......+|...+||++ +||+|++.++++|
T Consensus 1 krVLDiGCG~G~~~~~LA~~~p~~~v~GvDiS~~~ie~Ar~r~~~~gl~~rv~~~~~Da~~lpf~d-~FD~V~s~evl~H 79 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPD-TYDLVFGFEVIHH 79 (224)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCCC-CCCEEEHHHHHHC
T ss_conf 908998366888899999977998899997999999999999997299865147852110399999-8356768535765
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEE-------EEEEECC
Q ss_conf 229999999999846999889997338774034565327665655788899999996287621257-------8983086
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITS-------RSLFFPP 180 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~-------~~~~~pp 180 (242)
++|+.++|+|++|||||||++++.-+=.... +-... +--...+.+..+-.++|...+|.++..- .++|-|-
T Consensus 80 i~D~~~~l~ei~RvLKPGG~lviaD~~~n~~-~~i~~-~~~~~~~~t~~eW~~ll~~~~l~~~~~vd~s~~van~l~d~~ 157 (224)
T smart00828 80 IKDKMDLFSNISRHLKDGGHLVLADFIANLL-SAIEH-EETTSYLVTREEWAELLARNNLRVVEGVDASLEIANFLYDPG 157 (224)
T ss_pred CCCHHHHHHHHHHHCCCCEEEEEEEEECCCC-CCCCC-CCCCCCCCCHHHHHHHHHHCCCEEEEEEECCHHHHHHCCCCC
T ss_conf 3999999999998717984999998533788-87778-763002478999999997678536652213376641002820
Q ss_pred CCC-----------HHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEC
Q ss_conf 552-----------4676315899999976113214389999997512
Q gi|254780582|r 181 THK-----------KCILKLWSVFEKIGNIFGPGFAGIYVIEARKILY 217 (242)
Q Consensus 181 ~~~-----------~~~~~~~~~~e~~~~~~~p~~g~~~~i~a~K~~~ 217 (242)
+.. ..-.+..+.+++++..+-..+.++-++.++|..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~y~l~~~~K~~~ 205 (224)
T smart00828 158 FEDNLERLYQDDLDEVTKRHFRGIANLGKLLEKGLASYALLIVQKDEF 205 (224)
T ss_pred HHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHEEEEEEECCC
T ss_conf 445666506688447878502219999999987788776246871578
No 13
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=99.83 E-value=1.3e-19 Score=131.96 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=109.3
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHC--CCCEEEEEECHHHHHHHHHCCCCCEEEECHHH--CCCCCCCCCCHHH
Q ss_conf 9999750104897599965388111355312--38748873058999832311686236533365--6775472020022
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK--VERTLAFMPAGQGATNWPDQYFSSTALVSEGN--LPLADSSVDCVLM 101 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--LPf~~~sfD~Vi~ 101 (242)
+.+.++++ +|.+|||+|||.|.+...+.. .....+++.+...+...... ....+++|.+. .+|+|+|||+|++
T Consensus 5 ~iI~~~I~--~~srVLDlGCG~G~ll~~L~~~k~v~~~GvEid~~~v~~a~~k-g~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 5 RYIARLIP--PGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAK-GLSVIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred HHHHHHCC--CCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHC-CCCEECCCHHHCHHHCCCCCCCEEEH
T ss_conf 99998658--9698998368898999999876698769833899999999864-79545077445974577678037869
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-----HC------C-CC----CCCCCCHHHHHHHHHHC
Q ss_conf 024775229999999999846999889997338774034565-----32------7-66----56557888999999962
Q gi|254780582|r 102 VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARME-----HT------P-FG----SGQPYSWYQMISLLREA 165 (242)
Q Consensus 102 ~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~-----~~------~-~~----~~r~~~~~~l~~~l~~~ 165 (242)
+++|||+.||..+|+|+.|| |+++++++||-..+-.|.. +. | -| +-|++|-...++++++.
T Consensus 82 s~vLqhl~~P~~vL~EmlRV---gk~~IVSfPNf~hw~~R~~ll~~GrmPvt~~lp~~WydTpnih~~Ti~DFe~lc~~~ 158 (193)
T pfam07021 82 SQTLQATRNPREVLDELLRI---GRRAIVSFPNFGHWRVRWSLLSRGRMPVTDLLPYTWYDTPNIHFCTIRDFEELCEEL 158 (193)
T ss_pred HHHHHHHCCCHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 87998752819999998512---686999943614799999999478755589999761489984744599999999988
Q ss_pred CCCCEEEEEE
Q ss_conf 8762125789
Q gi|254780582|r 166 NFTLSITSRS 175 (242)
Q Consensus 166 gf~~~~~~~~ 175 (242)
|+++++....
T Consensus 159 ~i~I~~~~~l 168 (193)
T pfam07021 159 NLKVEDRAAL 168 (193)
T ss_pred CCEEEEEEEE
T ss_conf 9989999997
No 14
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.83 E-value=1.4e-19 Score=131.81 Aligned_cols=147 Identities=6% Similarity=0.005 Sum_probs=107.6
Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHC--CCCEEEEEECHHHHHHHHHCCC----CCEEEECHHHCCCCCCCCCCHH
Q ss_conf 999750104897599965388111355312--3874887305899983231168----6236533365677547202002
Q gi|254780582|r 27 VLSTTWDDVTGCRLLGLGYAIPFFSCFHGK--VERTLAFMPAGQGATNWPDQYF----SSTALVSEGNLPLADSSVDCVL 100 (242)
Q Consensus 27 ~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~LPf~~~sfD~Vi 100 (242)
.+..-+...+|.+|||||||.|....+++. ..++++++.+..+...+..... ....++|+..+||+++|||+|.
T Consensus 43 ~~l~~l~L~~~~kVLDvGCG~GG~a~~LA~~yg~~V~GiDls~~~~~~A~er~~~~~~v~f~~~d~~~~~f~d~sFDvV~ 122 (263)
T PTZ00098 43 KILSDIELDANSKVLDIGSGLGGGCKYINEKYGAHTHGIDICEKIVNIAKERNQDKAKIEFEAKDILKKDFPENNFDLIY 122 (263)
T ss_pred HHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEEEEE
T ss_conf 99850488999868886888788999999974987999858899999999855125854899678536778867455898
Q ss_pred HHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCC--CCHHHHHH---CCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 202477522--999999999984699988999733877--40345653---27665655788899999996287621257
Q gi|254780582|r 101 MVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKR--GMWARMEH---TPFGSGQPYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 101 ~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~--s~w~~~~~---~~~~~~r~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
+.+++.|++ |-..+++|+.|||||||+|+++-+=+. ..|+---. ..-.+ -..|+.+..+.|+.+||......
T Consensus 123 S~dailHip~~DK~~l~~e~~RvLKPGG~llitDw~~~~~~~~s~~~~~yi~~r~~-~l~s~~~Y~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 123 SRDAILHLSLADKKKLFEKCYKWLKPNGILLITDYCADEIENWDDEFKAYIKKRKY-TLIPIEEYADIIKACKFKNVEAK 201 (263)
T ss_pred EEHHHHCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCC-CCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 75022308824399999999998468878999750135789973989999984687-66799999999997799667875
Q ss_pred E
Q ss_conf 8
Q gi|254780582|r 174 R 174 (242)
Q Consensus 174 ~ 174 (242)
-
T Consensus 202 D 202 (263)
T PTZ00098 202 D 202 (263)
T ss_pred C
T ss_conf 1
No 15
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.83 E-value=1.4e-20 Score=137.43 Aligned_cols=167 Identities=17% Similarity=0.142 Sum_probs=122.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHC---CCCC--EEEECHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4897599965388111355312-38748873058999832311---6862--3653336567754720200220247752
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQ---YFSS--TALVSEGNLPLADSSVDCVLMVHYLEFA 108 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~d~~~LPf~~~sfD~Vi~~h~LE~~ 108 (242)
..|.+|||+|||.|.++.-+++ +..+.++|.+..++..++.. .... ......++|-.+.++||+|+|.++|||+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCCEEEEECCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEEHHHHHCC
T ss_conf 77770887458832864999977994697438767789998754424632252233299997248974489773587716
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCCC-HHH--------HHHCCCC---CCCCCCHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 299999999998469998899973387740-345--------6532766---5655788899999996287621257898
Q gi|254780582|r 109 EDPFLMLHEIWRVLTSGGRMIVVVPNKRGM-WAR--------MEHTPFG---SGQPYSWYQMISLLREANFTLSITSRSL 176 (242)
Q Consensus 109 ~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~-w~~--------~~~~~~~---~~r~~~~~~l~~~l~~~gf~~~~~~~~~ 176 (242)
+||..+++++.+.+||||.++++.+|+.-. |.. .+..|-+ ...+..+.++..|+...++.+.......
T Consensus 138 ~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~~~~~~~~g~~ 217 (243)
T COG2227 138 PDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGANLKIIDRKGLT 217 (243)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHCCCCCCEEEEECCEE
T ss_conf 99999999999862999289994201388999999998999987458863358886198999873235793588503426
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEE
Q ss_conf 308655246763158999999761132143899999975
Q gi|254780582|r 177 FFPPTHKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKI 215 (242)
Q Consensus 177 ~~pp~~~~~~~~~~~~~e~~~~~~~p~~g~~~~i~a~K~ 215 (242)
|.|-..+.. + -.....=|++.++|.
T Consensus 218 y~p~~~~~~-l-------------~~~~~vNy~~~~~~~ 242 (243)
T COG2227 218 YNPLTNSWK-L-------------SNDVSVNYMVHAQRP 242 (243)
T ss_pred ECCCCCEEE-E-------------CCCCCCEEEEEEECC
T ss_conf 504213467-3-------------488641279994057
No 16
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.82 E-value=1.4e-18 Score=126.10 Aligned_cols=171 Identities=12% Similarity=0.063 Sum_probs=123.1
Q ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHHCCC
Q ss_conf 8678899996128898999999999999750104897599965388111355312---3874887305899983231168
Q gi|254780582|r 2 RVDIVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPDQYF 78 (242)
Q Consensus 2 ~~di~~l~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 78 (242)
.+|...+.+| .+...+.+.++ -..++...+.+|||+|||+|.+...+.. ...++++|.|+.|+..++....
T Consensus 3 dWnp~~Y~rf-~~~r~rp~~DL-----l~~l~~~~~~~vlDlGCG~G~~t~~l~~r~p~a~v~GiD~S~~Ml~~Ar~~~~ 76 (252)
T PRK01683 3 DWNPSLYLQF-EAERTRPAVEL-----LARVPLENVEYVADLGCGPGNSTALLHQRWPAARITGIDSSPAMLAEARQALP 76 (252)
T ss_pred CCCHHHHHHH-HHHHHCHHHHH-----HHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCC
T ss_conf 8899999988-87764639999-----84188889998999377498999999997799879999898999999997589
Q ss_pred C-CEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH-H-H----HC---CCC
Q ss_conf 6-23653336567754720200220247752299999999998469998899973387740345-6-5----32---766
Q gi|254780582|r 79 S-STALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR-M-E----HT---PFG 148 (242)
Q Consensus 79 ~-~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~-~-~----~~---~~~ 148 (242)
+ ...++|.++++. +++||+|++..+|++++|+..++.++.|+|+|||+|.+-+|+...--.. . + .. ...
T Consensus 77 ~~~f~~~D~~~~~~-~~~~D~ifSNaalhW~~d~~~~~~~~~~~L~PGG~la~Q~p~n~~~~sh~l~~e~a~~~~~~~~~ 155 (252)
T PRK01683 77 DCQFVEADIRNWQP-EQALDLIYANASLQWLPDHYELFPHLVSLLAPQGVLAVQMPDNWLEPSHVLMREVAWEQNYPDRG 155 (252)
T ss_pred CCEEEECCHHCCCC-CCCCCEEEEEEEHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCC
T ss_conf 98387250420787-67878895610045078779999999982487879999889875769999999998665424013
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf 5655788899999996287621257898308
Q gi|254780582|r 149 SGQPYSWYQMISLLREANFTLSITSRSLFFP 179 (242)
Q Consensus 149 ~~r~~~~~~l~~~l~~~gf~~~~~~~~~~~p 179 (242)
..-+.++....++|..+|++++.+++....|
T Consensus 156 ~~~~~~~~~Y~~lL~~~g~~v~~w~t~y~~~ 186 (252)
T PRK01683 156 REPLLGVHAYYDLLAEAGCEVDIWRTTYYHP 186 (252)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEEEEEEEE
T ss_conf 6678998999999985787366766776544
No 17
>PRK05785 hypothetical protein; Provisional
Probab=99.73 E-value=6.5e-17 Score=116.55 Aligned_cols=98 Identities=16% Similarity=0.058 Sum_probs=82.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHH
Q ss_conf 48975999653881113553123874887305899983231168623653336567754720200220247752299999
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLM 114 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~ 114 (242)
..+.+|||+|||||.+...+......+++|++..++...... ...+++++++|||+|+|||+|++...|-+++|+.++
T Consensus 50 ~~~~~vLDva~GTGd~a~~l~~~~~v~~~D~s~~ML~~a~~~--~~~v~~~ae~LPf~d~sFD~vt~~FglRN~~d~~~a 127 (225)
T PRK05785 50 KSPLKVLDAGAGPGNMAYHLRKIRYVVALDYTEEMLRLNLVA--DDKVVGSFEAMPFRDKSFDLVMSGYALHASDDIEKA 127 (225)
T ss_pred CCCCEEEEECCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHC--CCCEEEHHHHCCCCCCCEEEEEEEEEEECCCCHHHH
T ss_conf 888828995688439999963478699998899999987643--211373185399998825277634430048889999
Q ss_pred HHHHHHHCCCCCEEEEEECC
Q ss_conf 99999846999889997338
Q gi|254780582|r 115 LHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 115 L~Ei~RvLkPgG~lii~~~n 134 (242)
|+|++||+++.+.|-++.|+
T Consensus 128 l~E~~RVlk~~~iLe~s~P~ 147 (225)
T PRK05785 128 VAEFSRVSRYQVVVAIGKPD 147 (225)
T ss_pred HHHHHHHCCCEEEEEECCCC
T ss_conf 99999730977999968998
No 18
>KOG1540 consensus
Probab=99.71 E-value=1.5e-16 Score=114.47 Aligned_cols=148 Identities=13% Similarity=0.084 Sum_probs=107.3
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---C------CCEEEEEECHHHHHHHHHCC------C---CCEEEEC
Q ss_conf 999999750104897599965388111355312---3------87488730589998323116------8---6236533
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---V------ERTLAFMPAGQGATNWPDQY------F---SSTALVS 85 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~------~~~~~~~~~~~~~~~~~~~~------~---~~~~~~d 85 (242)
-.+.+...+....|.++||++||+|.......+ . .++.++|.++.++....... . ...+.+|
T Consensus 88 WKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~d 167 (296)
T KOG1540 88 WKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGD 167 (296)
T ss_pred HHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 88876621587778758983477525677798761134577776179993898999999877751597768716999477
Q ss_pred HHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCC--HH-HHH-----------------HC
Q ss_conf 36567754720200220247752299999999998469998899973387740--34-565-----------------32
Q gi|254780582|r 86 EGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM--WA-RME-----------------HT 145 (242)
Q Consensus 86 ~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~--w~-~~~-----------------~~ 145 (242)
+|+|||+|++||..++...++.+.|++.+|+|+.|||||||++.+..|+.... .. ..+ +.
T Consensus 168 AE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~ 247 (296)
T KOG1540 168 AEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRK 247 (296)
T ss_pred CCCCCCCCCCCEEEEEECCEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_conf 01089997751158884211147877899999987527786799997354540778999971222321105576652176
Q ss_pred CC-----CCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 76-----656557888999999962876212
Q gi|254780582|r 146 PF-----GSGQPYSWYQMISLLREANFTLSI 171 (242)
Q Consensus 146 ~~-----~~~r~~~~~~l~~~l~~~gf~~~~ 171 (242)
.+ .-.|+....++..+..++||....
T Consensus 248 sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540 248 SYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCC
T ss_conf 5454776650699889999999972875102
No 19
>KOG1270 consensus
Probab=99.70 E-value=5e-17 Score=117.22 Aligned_cols=148 Identities=14% Similarity=0.152 Sum_probs=104.9
Q ss_pred CCEEEEECCCCCHHHHHHHCCCC-EEEEEECHHHHHHHHHCCCCCE------------EEECHHHCCCCCCCCCCHHHHH
Q ss_conf 97599965388111355312387-4887305899983231168623------------6533365677547202002202
Q gi|254780582|r 37 GCRLLGLGYAIPFFSCFHGKVER-TLAFMPAGQGATNWPDQYFSST------------ALVSEGNLPLADSSVDCVLMVH 103 (242)
Q Consensus 37 g~~vLdiGcg~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~d~~~LPf~~~sfD~Vi~~h 103 (242)
|.++||+|||+|+++.-+++.+. +.++|.+.+++..+........ ...+.|.+ .+.||+|+|++
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~---~~~fDaVvcse 166 (282)
T KOG1270 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL---TGKFDAVVCSE 166 (282)
T ss_pred CCEEEEECCCCCCCCHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCHHCCCCCEEEEHHHCCHHHC---CCCCCEEEEHH
T ss_conf 864787236755023235750885685265599999998751049033056414630201533214---56564544198
Q ss_pred HHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCC--HHH-------HHHCCCCC---CCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 47752299999999998469998899973387740--345-------65327665---6557888999999962876212
Q gi|254780582|r 104 YLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM--WAR-------MEHTPFGS---GQPYSWYQMISLLREANFTLSI 171 (242)
Q Consensus 104 ~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~--w~~-------~~~~~~~~---~r~~~~~~l~~~l~~~gf~~~~ 171 (242)
+|||+.||+.+++-+.+.|||+|.|+++.-|+--+ .+. .+..|.|- -.+.++.++..+|+..++++..
T Consensus 167 vleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~~v~~ 246 (282)
T KOG1270 167 VLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSILNANGAQVND 246 (282)
T ss_pred HHHHHHCHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHCCCCHHH
T ss_conf 99987478999999999848898258641123377762211299998864588875778708999999999863853431
Q ss_pred EEEEEEECCCCCHHHH
Q ss_conf 5789830865524676
Q gi|254780582|r 172 TSRSLFFPPTHKKCIL 187 (242)
Q Consensus 172 ~~~~~~~pp~~~~~~~ 187 (242)
+....|.|-.++-.|.
T Consensus 247 v~G~~y~p~s~~w~~~ 262 (282)
T KOG1270 247 VVGEVYNPISGQWLWS 262 (282)
T ss_pred HHCCCCCCCCCEEEEC
T ss_conf 2020215546615762
No 20
>pfam08241 Methyltransf_11 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=99.70 E-value=2.1e-17 Score=119.37 Aligned_cols=90 Identities=21% Similarity=0.282 Sum_probs=75.6
Q ss_pred EEECCCCCHHHHHHHCC--CCEEEEEECHHHHHHHHHCCCC---CEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 99653881113553123--8748873058999832311686---236533365677547202002202477522999999
Q gi|254780582|r 41 LGLGYAIPFFSCFHGKV--ERTLAFMPAGQGATNWPDQYFS---STALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLML 115 (242)
Q Consensus 41 LdiGcg~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L 115 (242)
||+|||+|.+...+.+. ...+++|++..++...+..... ....+|.+++|+++++||+|++.++++|++|+..++
T Consensus 1 LDiGcG~G~~~~~l~~~~~~~v~giD~s~~~i~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~I~~~~~l~~~~~~~~~l 80 (95)
T pfam08241 1 LDVGCGTGLLTEALARLPGAQVTGVDLSPEMLALARKRAQEDGLTFVVGDAEDLPFPDESFDVVVSSLVLHHLPDPERAL 80 (95)
T ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHCCCHHHHH
T ss_conf 96462499999999845799999994978998776631026694799803324675545685999833066468999999
Q ss_pred HHHHHHCCCCCEEEE
Q ss_conf 999984699988999
Q gi|254780582|r 116 HEIWRVLTSGGRMIV 130 (242)
Q Consensus 116 ~Ei~RvLkPgG~lii 130 (242)
+|+.|+|||||++++
T Consensus 81 ~~~~r~LkpgG~l~i 95 (95)
T pfam08241 81 REIARVLKPGGKLVI 95 (95)
T ss_pred HHHHHHCCCCEEEEC
T ss_conf 999987786949979
No 21
>pfam02353 CMAS Cyclopropane-fatty-acyl-phospholipid synthase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyse the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <= S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.
Probab=99.65 E-value=7.1e-15 Score=104.95 Aligned_cols=165 Identities=14% Similarity=0.089 Sum_probs=111.2
Q ss_pred HHHHHHHHHH---HHCCCCCCCEEEEECCCCCHHHHHHHCC--CCEEEEEECHHHHHHHHHC-------CCCCEEEECHH
Q ss_conf 9999999999---7501048975999653881113553123--8748873058999832311-------68623653336
Q gi|254780582|r 20 TTDAISKVLS---TTWDDVTGCRLLGLGYAIPFFSCFHGKV--ERTLAFMPAGQGATNWPDQ-------YFSSTALVSEG 87 (242)
Q Consensus 20 ~~~~~~~~l~---~~l~~~~g~~vLdiGcg~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~ 87 (242)
+.+++.++++ +.+.-.+|.+|||||||-|-+...+.+. ..++++..|........+. .......+|..
T Consensus 43 Le~AQ~~Kl~~i~~~l~l~~g~~vLDiGCGWG~~a~~~a~~~g~~v~giTlS~~Q~~~~~~r~~~~gl~~~v~v~~~Dyr 122 (273)
T pfam02353 43 LEEAQQAKLDLILDKLGLKPGMTLLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYKLARQRVAAEGLQRKVEVLLQDYR 122 (273)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCEEECCHH
T ss_conf 99999999999998658899998999788808999999984795189997978999999999987087432120006265
Q ss_pred HCCCCCCCCCCHHHHHHHHHH--CCHHHHHHHHHHHCCCCCEEEEEEC---CCCCCH------HHHHHCCCCCCCCCCHH
Q ss_conf 567754720200220247752--2999999999984699988999733---877403------45653276656557888
Q gi|254780582|r 88 NLPLADSSVDCVLMVHYLEFA--EDPFLMLHEIWRVLTSGGRMIVVVP---NKRGMW------ARMEHTPFGSGQPYSWY 156 (242)
Q Consensus 88 ~LPf~~~sfD~Vi~~h~LE~~--~dp~~~L~Ei~RvLkPgG~lii~~~---n~~s~w------~~~~~~~~~~~r~~~~~ 156 (242)
++ +++||.|++...+||+ ++-..+++++.|+|||||++++-.. ++...- ....+..|..+...|..
T Consensus 123 d~---~~~fD~IvSiem~Ehvg~~~~~~~f~~i~~~LkpgG~~~iq~i~~~~~~~~~~~~~~~~fi~kyIFPGG~lPs~~ 199 (273)
T pfam02353 123 DF---DEPFDRIVSVGMFEHVGHENYDTFFKKLYNLLPPGGLMLLHTITGLHPDETSERGLPLKFIDKYIFPGGELPSIS 199 (273)
T ss_pred HC---CCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCHHHCCCCCCHHHHHCCCCCCCCCHH
T ss_conf 47---666666776516876287779999999998658897399999942573210102774200777607998789999
Q ss_pred HHHHHHHHCCCCCEEEEEEEEECCCCCHHHH
Q ss_conf 9999999628762125789830865524676
Q gi|254780582|r 157 QMISLLREANFTLSITSRSLFFPPTHKKCIL 187 (242)
Q Consensus 157 ~l~~~l~~~gf~~~~~~~~~~~pp~~~~~~~ 187 (242)
.+...+...||++..++.....-.-+-..|+
T Consensus 200 ~~~~~~~~~~l~v~~~~~~g~HYa~TL~~W~ 230 (273)
T pfam02353 200 MIVESSSEAGFTVEDVESLRPHYAKTLDLWA 230 (273)
T ss_pred HHHHHHHHCCCEEEEEEECCHHHHHHHHHHH
T ss_conf 9999998689488676767365999999999
No 22
>pfam08003 Methyltransf_9 Protein of unknown function (DUF1698). This family contains many hypothetical proteins. It also includes two putative methyltransferase proteins.
Probab=99.64 E-value=2.9e-15 Score=107.12 Aligned_cols=149 Identities=13% Similarity=0.085 Sum_probs=105.6
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHH--HHHCCCCEEEEEECHHHHHHHHHC-----CCCCE--EEECHHHCCCCCCC
Q ss_conf 9999975010489759996538811135--531238748873058999832311-----68623--65333656775472
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSC--FHGKVERTLAFMPAGQGATNWPDQ-----YFSST--ALVSEGNLPLADSS 95 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~d~~~LPf~~~s 95 (242)
.+++...+..+.|.+|||||||.||..- ....+..++++||+.......... ..... +-...|+||.- +.
T Consensus 104 W~Rl~~~i~~L~gk~VlDVGcgNGYy~~RMlg~ga~~viGiDPs~lf~~QF~ai~~~~~~~~~~~~lPlg~E~lp~~-~~ 182 (315)
T pfam08003 104 WDRVLPHLSPLKGRTILDVGCGNGYHMWRMLGEGAALVVGIDPSELFLCQFEAVRKLLGNDQRAHLLPLGIEQLPAL-EA 182 (315)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCHHHCCCC-CC
T ss_conf 99887342242689887517786499998622399879988981999999999999708987568853676548663-42
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC-------CHHHHHHCCCCCCC-CCCHHHHHHHHHHCCC
Q ss_conf 020022024775229999999999846999889997338774-------03456532766565-5788899999996287
Q gi|254780582|r 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRG-------MWARMEHTPFGSGQ-PYSWYQMISLLREANF 167 (242)
Q Consensus 96 fD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s-------~w~~~~~~~~~~~r-~~~~~~l~~~l~~~gf 167 (242)
||+|+|+.||-|-.+|.+.|.++...|+|||.||+-+.---+ +-+++-+. .+.- ..|...|..||+.+||
T Consensus 183 FDtVFsMGVLYHrrsP~~hL~~Lk~~L~~gGeLvLETlvi~gd~~~~L~P~~rYA~M--~NV~fiPS~~~L~~Wl~r~GF 260 (315)
T pfam08003 183 FDTVFSMGVLYHRRSPLDHLLQLKDQLVKGGELVLETLVIEGDENTVLVPGDRYAQM--RNVYFIPSAAALKNWLEKCGF 260 (315)
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEEECCCCCEEECCCCCCCCC--CCCEECCCHHHHHHHHHHCCC
T ss_conf 155776544432689899999999852879789999877659887256788541479--875454788999999998599
Q ss_pred CCEEEEEEE
Q ss_conf 621257898
Q gi|254780582|r 168 TLSITSRSL 176 (242)
Q Consensus 168 ~~~~~~~~~ 176 (242)
+..+.-...
T Consensus 261 ~~i~~vd~~ 269 (315)
T pfam08003 261 VDVRIVDVS 269 (315)
T ss_pred CEEEEEECC
T ss_conf 327888778
No 23
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.64 E-value=3.3e-15 Score=106.82 Aligned_cols=151 Identities=18% Similarity=0.243 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC------CCCEEEEEECHHHHHHHHHCCCC-CEEEECHHHCCCC
Q ss_conf 9999999999750104897599965388111355312------38748873058999832311686-2365333656775
Q gi|254780582|r 20 TTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK------VERTLAFMPAGQGATNWPDQYFS-STALVSEGNLPLA 92 (242)
Q Consensus 20 ~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~LPf~ 92 (242)
+.+.+.+.+...++. ...+|||+|||.|+....+.. ....+++|.|..++..+.+.... ..+++|..+|||.
T Consensus 70 l~~~i~~~~~~~~~~-~~~~ilD~GCGEGyYl~~l~~~l~~~~~~~~~G~DiSK~ai~~Aak~~~~~~~~Va~~~~lP~~ 148 (272)
T PRK11088 70 LRDAVANLLAERLDE-KATAILDIGCGEGYYTHALADALPEVTTCQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFA 148 (272)
T ss_pred HHHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHCCCCCCEEEEEECCCCCCC
T ss_conf 999999999975677-7864888158777899999997411578737998117999999962688854999610018887
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 47202002202477522999999999984699988999733877403456532766565578889999999628762125
Q gi|254780582|r 93 DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSIT 172 (242)
Q Consensus 93 ~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~ 172 (242)
|+|+|+|+.... -.--.|+.|||||||.+|.++|++..+|.++.... ...+... .....+ .||+....
T Consensus 149 d~s~D~vl~vFs-------P~~~~Ef~RvLkp~G~li~V~P~~~HL~eLre~lY-~~~~~~~--~~~~~~--~~F~~~~~ 216 (272)
T PRK11088 149 DQSLDAIIRIYA-------PCKAEELARVVKPGGIVITVTPGPRHLFELKGLIY-DEVRLHA--PEAEQL--EGFELQHS 216 (272)
T ss_pred CCCCEEEEEEEC-------CCCHHHHHHEECCCCEEEEEECCHHHHHHHHHHHH-HCCCCCC--CCHHHH--CCCCEEEE
T ss_conf 665408999843-------78858861246379789999788889999999975-1566475--541254--36844268
Q ss_pred EEEEEECCCCC
Q ss_conf 78983086552
Q gi|254780582|r 173 SRSLFFPPTHK 183 (242)
Q Consensus 173 ~~~~~~pp~~~ 183 (242)
+...|...+..
T Consensus 217 ~~v~~~~~l~~ 227 (272)
T PRK11088 217 ERLAYPMRLTG 227 (272)
T ss_pred EEEEEEEECCH
T ss_conf 99999986588
No 24
>KOG4300 consensus
Probab=99.63 E-value=1.6e-15 Score=108.69 Aligned_cols=166 Identities=21% Similarity=0.268 Sum_probs=113.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH--CCCCEEEEEECHHHHHHHHH----C---CCC
Q ss_conf 99612889899999999999975010489759996538811135531--23874887305899983231----1---686
Q gi|254780582|r 9 RQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG--KVERTLAFMPAGQGATNWPD----Q---YFS 79 (242)
Q Consensus 9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~---~~~ 79 (242)
-.+|++..-.+ .+.+...+..++...--..+|++|||+|-...+.. ....++.+||++.+..-..+ . ...
T Consensus 50 t~~yne~~~~y-krelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300 50 TSIYNEIADSY-KRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEE
T ss_conf 99999999999-99998526877343575136996146888853555788856898678487999999888642572057
Q ss_pred CEEEECHHHCC-CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC--CCCCCHHHHHH---CCCCCCCC-
Q ss_conf 23653336567-7547202002202477522999999999984699988999733--87740345653---27665655-
Q gi|254780582|r 80 STALVSEGNLP-LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP--NKRGMWARMEH---TPFGSGQP- 152 (242)
Q Consensus 80 ~~~~~d~~~LP-f~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~--n~~s~w~~~~~---~~~~~~r~- 152 (242)
+.+.++.|+|| ++|.|+|+||+..+|.-++||.+.|+|+.|+|+|||+++++.- ...+.|.+.-. .|.||...
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~ep~~~~~~d 208 (252)
T KOG4300 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVAEPLWHLESD 208 (252)
T ss_pred EEEEECHHCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCHHHHEECC
T ss_conf 77850521074213677115777888720577999999988750889589997212442108999999874556650234
Q ss_pred --CCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf --78889999999628762125789
Q gi|254780582|r 153 --YSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 153 --~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
.--+...+.|.++.|+..+....
T Consensus 209 GC~ltrd~~e~Leda~f~~~~~kr~ 233 (252)
T KOG4300 209 GCVLTRDTGELLEDAEFSIDSCKRF 233 (252)
T ss_pred CEEEEHHHHHHHHHCCCCCCHHHCC
T ss_conf 4587645777755330441111002
No 25
>TIGR02081 metW methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells . .
Probab=99.62 E-value=2.4e-15 Score=107.66 Aligned_cols=142 Identities=21% Similarity=0.210 Sum_probs=105.5
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCC--CE--------EEEEECHHHHHHHHHCCCCCEEEECHH-HC-CCCC
Q ss_conf 999975010489759996538811135531238--74--------887305899983231168623653336-56-7754
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVE--RT--------LAFMPAGQGATNWPDQYFSSTALVSEG-NL-PLAD 93 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~~~d~~-~L-Pf~~ 93 (242)
+.|.++++ +|++|||+|||.|.+...+.+.. .. .++..+...+... -..+..++++|.+ .| -|+|
T Consensus 5 ~~I~~~Ip--~GSRVLDLGCGdG~LL~~L~d~k~v~GPPttehRL~G~Eid~~~v~Ac-~~RGv~VIq~Dld~GL~~F~D 81 (205)
T TIGR02081 5 ELILDLIP--PGSRVLDLGCGDGELLALLRDEKQVRGPPTTEHRLYGIEIDQDGVLAC-VARGVSVIQGDLDEGLEAFPD 81 (205)
T ss_pred HHHHHHCC--CCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEECHHHHHHH-HHCCCCEECCCCCCCCCCCCC
T ss_conf 88986168--887364101688789999997437898887120001023454459999-862520130060034011678
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH------HCC-C-------C----CCCCCCH
Q ss_conf 72020022024775229999999999846999889997338774034565------327-6-------6----5655788
Q gi|254780582|r 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARME------HTP-F-------G----SGQPYSW 155 (242)
Q Consensus 94 ~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~------~~~-~-------~----~~r~~~~ 155 (242)
+|||+||++.||.-++||..+|+|+-||=+ +.||+.||- +.|-.+. +.| - | +-|+.|-
T Consensus 82 ~~FD~ViLsQTLQa~~Np~~iL~EmLRvg~---~aIVSFPNF-GyW~~R~~i~~~GRMPkVt~~lPY~WynTPNiHfcT~ 157 (205)
T TIGR02081 82 KSFDYVILSQTLQATRNPEEILDEMLRVGR---RAIVSFPNF-GYWRVRWSILTGGRMPKVTDELPYEWYNTPNIHFCTL 157 (205)
T ss_pred CCCCEEEECHHHHHHHCHHHHHHHHHHHCC---EEEEECCCC-CCHHCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 876625421356642256899988776738---515605887-7110103111078588788787888888887532337
Q ss_pred HHHHHHHHHCCCCCEEEEE
Q ss_conf 8999999962876212578
Q gi|254780582|r 156 YQMISLLREANFTLSITSR 174 (242)
Q Consensus 156 ~~l~~~l~~~gf~~~~~~~ 174 (242)
+-..+++.+.+++|+.--.
T Consensus 158 ~DF~~L~~~~~~~i~~r~~ 176 (205)
T TIGR02081 158 ADFEELCEELNLRILDRAA 176 (205)
T ss_pred HHHHHHHHHCCCEEHHHHH
T ss_conf 7899999871965137788
No 26
>pfam08242 Methyltransf_12 Methyltransferase domain. Members of this family are SAM dependent methyltransferases.
Probab=99.54 E-value=5.6e-15 Score=105.55 Aligned_cols=88 Identities=17% Similarity=0.154 Sum_probs=67.4
Q ss_pred EEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHCCC----C--CEE-EECHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 99653881113553123---874887305899983231168----6--236-5333656775472020022024775229
Q gi|254780582|r 41 LGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQYF----S--STA-LVSEGNLPLADSSVDCVLMVHYLEFAED 110 (242)
Q Consensus 41 LdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~--~~~-~~d~~~LPf~~~sfD~Vi~~h~LE~~~d 110 (242)
||+|||+|.+...+... ...+++|.++.++...++... . ..+ ....+..++++++||+|++.++|||++|
T Consensus 1 LDvGcG~G~~~~~l~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vl~~~~~ 80 (98)
T pfam08242 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLDPGSFDVVVASNVLHHLAD 80 (98)
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCHHHEEECCCHHHCCCCCCCEEEECCCHHHCCC
T ss_conf 98863379999999987899889998598899999999998713453111000000022203589889961041772589
Q ss_pred HHHHHHHHHHHCCCCCEE
Q ss_conf 999999999846999889
Q gi|254780582|r 111 PFLMLHEIWRVLTSGGRM 128 (242)
Q Consensus 111 p~~~L~Ei~RvLkPgG~l 128 (242)
|..+|+|+.|+|||||+|
T Consensus 81 ~~~~l~~~~r~LkpgG~l 98 (98)
T pfam08242 81 PRAVLRNLRRLLKPGGVL 98 (98)
T ss_pred HHHHHHHHHHHCCCCCCC
T ss_conf 999999999974999899
No 27
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.50 E-value=6.4e-14 Score=99.50 Aligned_cols=94 Identities=21% Similarity=0.183 Sum_probs=73.4
Q ss_pred EEEEECCCCCHHHHHHHC--CCCEEEEEECHHHHHHHHHC------CCCCEEEECHHHCC-CCCCCCCCHHHHHHHHHH-
Q ss_conf 599965388111355312--38748873058999832311------68623653336567-754720200220247752-
Q gi|254780582|r 39 RLLGLGYAIPFFSCFHGK--VERTLAFMPAGQGATNWPDQ------YFSSTALVSEGNLP-LADSSVDCVLMVHYLEFA- 108 (242)
Q Consensus 39 ~vLdiGcg~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~~LP-f~~~sfD~Vi~~h~LE~~- 108 (242)
+|||+|||+|.....+.+ ....+++|.++.+....... .......+|.++++ +++++||.|++..+++|.
T Consensus 1 rVLDiGcG~G~~~~~l~~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~V~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CEEEEECCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCHHHCCHHHCCCEEEEEEECCEECCC
T ss_conf 99999888799999999568988999989888999999987532788646714886788632057531999917501065
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 299999999998469998899973
Q gi|254780582|r 109 EDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 109 ~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
+|+.++++|+.|+|||||+++++.
T Consensus 81 ~~~~~~l~~~~~~LkpgG~~~is~ 104 (107)
T cd02440 81 EDLARFLEEARRLLKPGGVLVLTL 104 (107)
T ss_pred CCHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 189999999998748581999999
No 28
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=4.9e-13 Score=94.47 Aligned_cols=155 Identities=14% Similarity=0.122 Sum_probs=109.9
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC--CCEEEEEECHHHHHHHHH----CCCCCEEEECHHHCCCCCCC
Q ss_conf 999999997501048975999653881113553123--874887305899983231----16862365333656775472
Q gi|254780582|r 22 DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV--ERTLAFMPAGQGATNWPD----QYFSSTALVSEGNLPLADSS 95 (242)
Q Consensus 22 ~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~LPf~~~s 95 (242)
..-.+.+.+.+...+|.++||||||-|.+..+.... ..+++++.|........+ ......+.....+++..++.
T Consensus 58 ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 58 RAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCC
T ss_conf 99999999756999999898747884499999999849979996689999999999999759976607996562103243
Q ss_pred CCCHHHHHHHHHHCC--HHHHHHHHHHHCCCCCEEEEEECCCCCCHH-----HHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 020022024775229--999999999846999889997338774034-----5653276656557888999999962876
Q gi|254780582|r 96 VDCVLMVHYLEFAED--PFLMLHEIWRVLTSGGRMIVVVPNKRGMWA-----RMEHTPFGSGQPYSWYQMISLLREANFT 168 (242)
Q Consensus 96 fD~Vi~~h~LE~~~d--p~~~L~Ei~RvLkPgG~lii~~~n~~s~w~-----~~~~~~~~~~r~~~~~~l~~~l~~~gf~ 168 (242)
||.|++..++||+.. -..+++-+.++|+|||++++-.......+. ...+..|-.+...+...+..+..+.||.
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~~~~~~i~~yiFPgG~lPs~~~i~~~~~~~~~~ 217 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFRRFPDFIDKYIFPGGELPSISEILELASEAGFV 217 (283)
T ss_pred CCEEEEHHHHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCE
T ss_conf 42055600688737102899999999645999659999966788554433278998578998489779999988756868
Q ss_pred CEEEEEEE
Q ss_conf 21257898
Q gi|254780582|r 169 LSITSRSL 176 (242)
Q Consensus 169 ~~~~~~~~ 176 (242)
+..++...
T Consensus 218 v~~~~~~~ 225 (283)
T COG2230 218 VLDVESLR 225 (283)
T ss_pred EEHHHHHC
T ss_conf 84276406
No 29
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.48 E-value=8.5e-13 Score=93.09 Aligned_cols=147 Identities=18% Similarity=0.080 Sum_probs=100.2
Q ss_pred HHHHHHHHCC---CCCCCEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHCCC-------CCEEEECHHHCCCC
Q ss_conf 9999997501---0489759996538811135531-23874887305899983231168-------62365333656775
Q gi|254780582|r 24 ISKVLSTTWD---DVTGCRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQYF-------SSTALVSEGNLPLA 92 (242)
Q Consensus 24 ~~~~l~~~l~---~~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~~LPf~ 92 (242)
..+.+..+++ +..|.+|||+|||+|.+...+. .+..+++.|.|+.++..+..... .....+| |...
T Consensus 48 mr~~~l~wl~~~~dl~G~rVLDaGCGtG~la~~LA~~Ga~V~avDiS~~mi~~A~~Ra~~~g~~~~v~F~~gD---le~~ 124 (230)
T PRK07580 48 MRDTVLSWLPADGDLTGLSILDAGCGTGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLDGNITFEVGD---LESL 124 (230)
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECC---CCCC
T ss_conf 9999999731059978998988187867879999977998999838999999999755862787675389667---6545
Q ss_pred CCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCCHH----HHHHCCCC----CCCCCCHHHHHHHH
Q ss_conf 47202002202477522--9999999999846999889997338774034----56532766----56557888999999
Q gi|254780582|r 93 DSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGMWA----RMEHTPFG----SGQPYSWYQMISLL 162 (242)
Q Consensus 93 ~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~----~~~~~~~~----~~r~~~~~~l~~~l 162 (242)
+++||.|+|+.+|+|.+ |-.+.|+++.. +.+|.++++.-.+-.+.. ..+..|-. ...+.+...|.+.+
T Consensus 125 ~G~FD~Vv~mdvLiHYp~~d~~~~l~~la~--~~~~~~ifTfAP~T~lL~~m~~iGklFP~~drsp~~~p~~~~~l~~~l 202 (230)
T PRK07580 125 LGSFDTVVCLDVLIHYPQEDAERMLAHLAS--LTRGSLIFTFAPYTPLLALLHWIGGFFPGPSRTTRIYPHREKGIRRAL 202 (230)
T ss_pred CCCCCCHHHCCCEEECCHHHHHHHHHHHHH--CCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHH
T ss_conf 798660233371554578899999999972--558859999689869999999986438999999726973889999999
Q ss_pred HHCCCCCEEEEEE
Q ss_conf 9628762125789
Q gi|254780582|r 163 REANFTLSITSRS 175 (242)
Q Consensus 163 ~~~gf~~~~~~~~ 175 (242)
..+||++.+....
T Consensus 203 ~~~g~~v~r~~ri 215 (230)
T PRK07580 203 AEAGFKVVRTERI 215 (230)
T ss_pred HHCCCEEEECCCC
T ss_conf 9669867512332
No 30
>pfam05219 DREV DREV methyltransferase. This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown. However, these proteins appear to be related to other methyltransferases (Bateman A pers obs).
Probab=99.39 E-value=8.1e-12 Score=87.50 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=98.1
Q ss_pred CCCEEEEECCCCCHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 89759996538811135531238748873058999832311686236533365677547202002202477522999999
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLML 115 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L 115 (242)
...++||+|+|.|.-...+......+....++..+...-.......+ +..++.-.+.+||+|.|.++|+-+++|..+|
T Consensus 94 ~~~~LLDlGAGdG~VT~~la~~F~~V~aTE~S~~Mr~rL~~rgf~vl--~~~~~~~~~~~fDvIscLNvLDRc~~P~~LL 171 (265)
T pfam05219 94 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVL--TEIEWQETDVNLDLILCLNLLDRCFDPFKLL 171 (265)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHCEEEEEECCHHHHHHHHHCCCEEE--EEHHCCCCCCCEEEEHHHHHHHCCCCHHHHH
T ss_conf 76647883589978999999752358887278999999997598687--5012035687445542224453138869999
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHH---HHCCC-----CCCCCC--CHHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 999984699988999733877403456---53276-----656557--888999999962876212578983086
Q gi|254780582|r 116 HEIWRVLTSGGRMIVVVPNKRGMWARM---EHTPF-----GSGQPY--SWYQMISLLREANFTLSITSRSLFFPP 180 (242)
Q Consensus 116 ~Ei~RvLkPgG~lii~~~n~~s~w~~~---~~~~~-----~~~r~~--~~~~l~~~l~~~gf~~~~~~~~~~~pp 180 (242)
+++++.|+|+|++++.+--|++++=-. +..++ -.+..+ ....+.+.|.-+||+++.+...=|...
T Consensus 172 ~~i~~~L~P~G~lilAvVlPf~pyVE~~~~~~~~p~e~l~~~g~~~E~~v~~l~~vl~p~GF~v~~~tR~PYLCE 246 (265)
T pfam05219 172 EDIHLALAPNGRVIVALVLPYMHYVETNTGSHLPPRPLLENNGASFEEEVARFMEVFENAGFRVEAWTRLPYLCE 246 (265)
T ss_pred HHHHHHCCCCCEEEEEEEECCCCEEECCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 999972499967999998256201775898779952113789980999999999987607957888732673156
No 31
>pfam05148 Methyltransf_8 Hypothetical methyltransferase. This family consists of several uncharacterized eukaryotic proteins which are related to methyltransferases pfam01209.
Probab=99.35 E-value=1.4e-11 Score=86.09 Aligned_cols=113 Identities=17% Similarity=0.126 Sum_probs=90.0
Q ss_pred CCCEEEEECCCCCHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 89759996538811135531238748873058999832311686236533365677547202002202477522999999
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLML 115 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L 115 (242)
....|.|+|||.+.++........+.++|.. ........||..++|++|+|+|++|+.-.|--+ |-..+|
T Consensus 67 ~~~vIaD~GCGdA~lA~~~~~~~kV~SfDLv---------a~n~~Vt~cDi~~~PL~d~svDvaVfCLSLMGT-N~~~fi 136 (214)
T pfam05148 67 GNGVIADLGCGEARIAFRKREFENVHSFDLV---------AVNKRVIPCDMARVPLEDESVDVAVFCLSLMGT-NIADFL 136 (214)
T ss_pred CCEEEEECCCCHHHHHHHCCCCCEEEEEECC---------CCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCC-CHHHHH
T ss_conf 9718997588657999864678738851325---------689883513533687887726368775876288-779999
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999846999889997338774034565327665655788899999996287621257
Q gi|254780582|r 116 HEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 116 ~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
.|++|||||||.|.|..... |+-+..+..+.++..||+.....
T Consensus 137 ~EA~RvLk~~G~L~IAEV~S---------------Rf~~~~~Fv~~~~~~GF~~~~~d 179 (214)
T pfam05148 137 KEANRILKNGGLLKIAEVRS---------------RFPSVGLFERAFTKLGFEVEHVD 179 (214)
T ss_pred HHHHHHCCCCCEEEEEEEEC---------------CCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 99876031087899999740---------------16898999999997597677530
No 32
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.35 E-value=2e-11 Score=85.29 Aligned_cols=151 Identities=13% Similarity=0.087 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHH---CCCCCCCEEEEECCCCCHHHHHHHCC--CCEEEEEECHHHHHHHHHC---CCCCEEEECHHHCCC
Q ss_conf 999999999975---01048975999653881113553123--8748873058999832311---686236533365677
Q gi|254780582|r 20 TTDAISKVLSTT---WDDVTGCRLLGLGYAIPFFSCFHGKV--ERTLAFMPAGQGATNWPDQ---YFSSTALVSEGNLPL 91 (242)
Q Consensus 20 ~~~~~~~~l~~~---l~~~~g~~vLdiGcg~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~LPf 91 (242)
+.++..++++.+ +.-.+|.+|||||||-|-+....... ..+.++..|.+......+. ......+.|..++
T Consensus 148 Le~AQ~~Kl~~i~~kl~l~~G~~VLeIGcGWGgla~~aA~~~g~~VtgiTlS~eQ~~~a~~r~~gl~v~v~l~DYRd~-- 225 (383)
T PRK11705 148 LEEAQEAKLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-- 225 (383)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCCEEEECCHHHC--
T ss_conf 999999999999986489999979885787499999999974975999858899999999997389878997152443--
Q ss_pred CCCCCCCHHHHHHHHHH--CCHHHHHHHHHHHCCCCCEEEEEECC---CCC-CHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 54720200220247752--29999999999846999889997338---774-0345653276656557888999999962
Q gi|254780582|r 92 ADSSVDCVLMVHYLEFA--EDPFLMLHEIWRVLTSGGRMIVVVPN---KRG-MWARMEHTPFGSGQPYSWYQMISLLREA 165 (242)
Q Consensus 92 ~~~sfD~Vi~~h~LE~~--~dp~~~L~Ei~RvLkPgG~lii~~~n---~~s-~w~~~~~~~~~~~r~~~~~~l~~~l~~~ 165 (242)
++.||.|++...+||+ ++-...++.+.|+|+|||++++-... ... .-....+..|-.+...|..++....+.
T Consensus 226 -~g~fD~IvSIeM~EhVG~~~~~~yF~~i~~lLkp~G~~~lqtI~~~~~~~~~d~fI~kYIFPGG~LPs~~~i~~a~~~- 303 (383)
T PRK11705 226 -NGQFDRIVSVGMFEHVGPKNYRTYFEVVDRCLKPDGLFLLHTIGSNKTDTNVDPWINKYIFPNGCLPSVRQIAQASEG- 303 (383)
T ss_pred -CCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHC-
T ss_conf -677355999714865287779999999998569997399999336677776551288846789879998999999858-
Q ss_pred CCCCEEEEE
Q ss_conf 876212578
Q gi|254780582|r 166 NFTLSITSR 174 (242)
Q Consensus 166 gf~~~~~~~ 174 (242)
.|.++.++.
T Consensus 304 ~~~~~d~~~ 312 (383)
T PRK11705 304 LFVMEDWHN 312 (383)
T ss_pred CCEEEEEEC
T ss_conf 938986304
No 33
>KOG3045 consensus
Probab=99.28 E-value=5.5e-11 Score=82.76 Aligned_cols=111 Identities=15% Similarity=0.173 Sum_probs=86.5
Q ss_pred CCCEEEEECCCCCHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 89759996538811135531238748873058999832311686236533365677547202002202477522999999
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLML 115 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L 115 (242)
....|-|+|||.+-+.. +....+.++|.. ....+.+.||..++|++|+|+|++|+.-.|-- .|-..++
T Consensus 180 ~~~vIaD~GCGEakiA~--~~~~kV~SfDL~---------a~~~~V~~cDm~~vPl~d~svDvaV~CLSLMg-tn~~df~ 247 (325)
T KOG3045 180 KNIVIADFGCGEAKIAS--SERHKVHSFDLV---------AVNERVIACDMRNVPLEDESVDVAVFCLSLMG-TNLADFI 247 (325)
T ss_pred CCEEEEECCCCHHHHHH--CCCCCEEEEEEE---------CCCCCEEECCCCCCCCCCCCCCEEEEEHHHHC-CCHHHHH
T ss_conf 76478853664233320--466650466300---------27885353224478676675447875275534-3389999
Q ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 9999846999889997338774034565327665655788899999996287621257
Q gi|254780582|r 116 HEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 116 ~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
.|+.|||+|||.|.|...- .||-+.+.+.+-|..+||++....
T Consensus 248 kEa~RiLk~gG~l~IAEv~---------------SRf~dv~~f~r~l~~lGF~~~~~d 290 (325)
T KOG3045 248 KEANRILKPGGLLYIAEVK---------------SRFSDVKGFVRALTKLGFDVKHKD 290 (325)
T ss_pred HHHHHHHCCCCEEEEEEHH---------------HHCCCHHHHHHHHHHCCCEEEEHH
T ss_conf 9998873358669998602---------------213408899999987287022110
No 34
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase; InterPro: IPR014122 MenG is a generic term for a methyltransferase that catalyses the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species..
Probab=99.17 E-value=1.3e-10 Score=80.66 Aligned_cols=150 Identities=15% Similarity=0.080 Sum_probs=110.5
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHH----HCCCCEEEEEECHHHHHHHHHC------CCCCEEEECHHHCCCCCCC
Q ss_conf 99997501048975999653881113553----1238748873058999832311------6862365333656775472
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFH----GKVERTLAFMPAGQGATNWPDQ------YFSSTALVSEGNLPLADSS 95 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~~LPf~~~s 95 (242)
+...+.+.-..|..+||+-||++.....+ ...+.+.++|-+.+++...... .....+.+++-+|||++++
T Consensus 35 ~~~m~~m~v~~G~~~ldvCCGt~dW~~~l~~~~G~~G~v~Gldfs~nml~~~~~k~~~~~~~~~~l~hGnam~lP~~~~~ 114 (231)
T TIGR02752 35 KDTMKRMNVQKGKKALDVCCGTADWAIALAEAVGKEGEVKGLDFSENMLSVGKQKVKDAKLSNVELVHGNAMELPYDDNS 114 (231)
T ss_pred HHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHEEEECCCHHCCCCCCCC
T ss_conf 99987765640412112103733788898886177771674003588999999888754320022230520017877666
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH--------CC-------------CC----CC
Q ss_conf 0200220247752299999999998469998899973387740345653--------27-------------66----56
Q gi|254780582|r 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEH--------TP-------------FG----SG 150 (242)
Q Consensus 96 fD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~--------~~-------------~~----~~ 150 (242)
||.|..-..|-.++|--.+|+|+.||.||||.++.+.-....+.+.+.. .| -| ..
T Consensus 115 fdyvtiGfGlrnvPdy~~vl~em~rv~kPGG~~~C~~tsqP~~~~~~q~y~~yf~~~mP~~Gk~~ak~y~eysWlqes~~ 194 (231)
T TIGR02752 115 FDYVTIGFGLRNVPDYMTVLKEMARVVKPGGKVVCLETSQPTLPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESAR 194 (231)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 12577525512302699999998886279971798625776257999999999999988777888643345577777765
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 5578889999999628762125789
Q gi|254780582|r 151 QPYSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 151 r~~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
.+....+|.+++.++|+.-......
T Consensus 195 ~fPG~~~l~~~f~~~G~~~v~~~~~ 219 (231)
T TIGR02752 195 EFPGKDELAEMFKEAGLKDVEVKSY 219 (231)
T ss_pred HCCCHHHHHHHHHHCCHHHEEEEEC
T ss_conf 1786789999998527011223100
No 35
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=80.72 Aligned_cols=155 Identities=14% Similarity=0.083 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH-HCCCCEEEEEECHHHHHHHHHCCCCCEE-EECHH-HCC-CC
Q ss_conf 89999999999997501048975999653881113553-1238748873058999832311686236-53336-567-75
Q gi|254780582|r 17 GKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH-GKVERTLAFMPAGQGATNWPDQYFSSTA-LVSEG-NLP-LA 92 (242)
Q Consensus 17 G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~-~LP-f~ 92 (242)
|..+-..+.+.|... ...+-.++||+|||||+....+ ....+..++|.|.+++.+..+....... +++.. .++ ..
T Consensus 107 ~Y~vP~~l~emI~~~-~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~ 185 (287)
T COG4976 107 GYSVPELLAEMIGKA-DLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLT 185 (287)
T ss_pred CCCCHHHHHHHHHHC-CCCCCCEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 576189999999751-5776202344266767662767888865127762699999988624157888989998755226
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCC-CCHHHHHHHHHHCCCCCEE
Q ss_conf 472020022024775229999999999846999889997338774034565327665655-7888999999962876212
Q gi|254780582|r 93 DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQP-YSWYQMISLLREANFTLSI 171 (242)
Q Consensus 93 ~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~-~~~~~l~~~l~~~gf~~~~ 171 (242)
++.||.|+...||-++.+...++--+...|+|||.+.+++=.--..|+ +.-.| +.|+ .+...+++.|...||++..
T Consensus 186 ~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~-f~l~p--s~RyAH~~~YVr~~l~~~Gl~~i~ 262 (287)
T COG4976 186 QERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGG-FVLGP--SQRYAHSESYVRALLAASGLEVIA 262 (287)
T ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC-EECCH--HHHHCCCHHHHHHHHHHCCCEEEE
T ss_conf 776430124567886400346899999855898648987231677787-32164--653225228999999745962787
Q ss_pred EEEE
Q ss_conf 5789
Q gi|254780582|r 172 TSRS 175 (242)
Q Consensus 172 ~~~~ 175 (242)
++..
T Consensus 263 ~~~t 266 (287)
T COG4976 263 IEDT 266 (287)
T ss_pred EECC
T ss_conf 4243
No 36
>KOG2940 consensus
Probab=99.16 E-value=3.5e-10 Score=78.19 Aligned_cols=157 Identities=13% Similarity=0.068 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHHHCCCC--CCCEEEEECCCCCHHHHHHHC-CC-CEEEEEECHHHHHHHHHCCCCC----EEEECHHHC
Q ss_conf 999999999999750104--897599965388111355312-38-7488730589998323116862----365333656
Q gi|254780582|r 18 KCTTDAISKVLSTTWDDV--TGCRLLGLGYAIPFFSCFHGK-VE-RTLAFMPAGQGATNWPDQYFSS----TALVSEGNL 89 (242)
Q Consensus 18 ~~~~~~~~~~l~~~l~~~--~g~~vLdiGcg~g~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~d~~~L 89 (242)
+++.+.+..++.+.+-+. ....++||||+.|.....+.. .- ..+..|.+..++...+...... ..++|.|.|
T Consensus 52 dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~L 131 (325)
T KOG2940 52 DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFL 131 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHCCHHHEEEEECCHHHHHHHHCCCCCCEEEEEEECCHHCC
T ss_conf 68999988888899987766075204406554465688775251340664041679997532689853799972551015
Q ss_pred CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHC----------CCCCCCCCCH-HHH
Q ss_conf 77547202002202477522999999999984699988999733877403456532----------7665655788-899
Q gi|254780582|r 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHT----------PFGSGQPYSW-YQM 158 (242)
Q Consensus 90 Pf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~----------~~~~~r~~~~-~~l 158 (242)
+|.++|||.|+++..|+++.|..+.+..++..|||+|.++-+.+.-..+..++-.. .-.|..+|.. +.+
T Consensus 132 df~ens~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDi 211 (325)
T KOG2940 132 DFKENSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDI 211 (325)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 65535011126543345640483689998874289751216775644099999876389887516988776704665566
Q ss_pred HHHHHHCCCCCEEEEE
Q ss_conf 9999962876212578
Q gi|254780582|r 159 ISLLREANFTLSITSR 174 (242)
Q Consensus 159 ~~~l~~~gf~~~~~~~ 174 (242)
..+|..+||...-+..
T Consensus 212 G~LL~rAGF~m~tvDt 227 (325)
T KOG2940 212 GNLLTRAGFSMLTVDT 227 (325)
T ss_pred HHHHHHCCCCCCEECC
T ss_conf 6577644766400032
No 37
>PRK06202 hypothetical protein; Provisional
Probab=99.14 E-value=6.2e-10 Score=76.75 Aligned_cols=137 Identities=11% Similarity=0.057 Sum_probs=88.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHCCC-------CEEEEEECHHHHHHHHHCC---CCCEEEECHHHCCCCCCCCCCHHHHHH
Q ss_conf 489759996538811135531238-------7488730589998323116---862365333656775472020022024
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGKVE-------RTLAFMPAGQGATNWPDQY---FSSTALVSEGNLPLADSSVDCVLMVHY 104 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~~LPf~~~sfD~Vi~~h~ 104 (242)
....+|||+|||.|.+...+.+.. ..+++|.++..+..++... .......+.+.+++.+++||+|+|+++
T Consensus 60 ~r~~~VLDlGcG~Gdl~~~lar~a~~~g~~l~v~GiD~~~~ai~~Ar~~a~~~~~~~~~~~~d~l~~~~~~~DvV~~sl~ 139 (233)
T PRK06202 60 DRPLTVLDLGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAIRFARANARRRGVTFRFAVSDELVAEGERFDVVYSNHF 139 (233)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCCCCEEEEEHHHHCCCCCCCCEEEHHHH
T ss_conf 88728998347875799999999975599638999779889999998734036983699734320245788757603246
Q ss_pred HHHHCCHH--HHHHHHHHHCCCCCEEEEEECCCCCCHHHH---------HHCCC-------CCCCCCCHHHHHHHHHHCC
Q ss_conf 77522999--999999984699988999733877403456---------53276-------6565578889999999628
Q gi|254780582|r 105 LEFAEDPF--LMLHEIWRVLTSGGRMIVVVPNKRGMWARM---------EHTPF-------GSGQPYSWYQMISLLREAN 166 (242)
Q Consensus 105 LE~~~dp~--~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~---------~~~~~-------~~~r~~~~~~l~~~l~~~g 166 (242)
|+|.+|++ .+|+++.+.-+-+ +++.-..+ |.++.. .++.+ .-.+.|++.++..++.. +
T Consensus 140 LHHf~d~ql~~ll~~~~~~ar~~--vvinDL~R-s~lay~~~~l~~~l~~~~~~~r~DG~~Sv~raf~~~El~~l~~~-~ 215 (233)
T PRK06202 140 LHHLDDADVVRLLADMAALARRL--VLHNDLIR-SRLAYALAWAGTRLLSRSSFVHTDGLLSVRRSFTPAELAALAPQ-G 215 (233)
T ss_pred HHCCCHHHHHHHHHHHHHHCCEE--EEECCCCC-CHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCHHHHHHHCCC-C
T ss_conf 86498299999999999863826--99746532-76589999999888636964420518899986699999987146-8
Q ss_pred CCCEEEEEE
Q ss_conf 762125789
Q gi|254780582|r 167 FTLSITSRS 175 (242)
Q Consensus 167 f~~~~~~~~ 175 (242)
|++....-+
T Consensus 216 ~~i~~~wpf 224 (233)
T PRK06202 216 WRVERSWPE 224 (233)
T ss_pred CEEECCCCC
T ss_conf 777126644
No 38
>TIGR00452 TIGR00452 methyltransferase, putative; InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . This is a set of proteobacterial proteins, which have homology in their central region to a large number of methyltransferases active on a variety of substrates. .
Probab=99.14 E-value=5.3e-10 Score=77.14 Aligned_cols=155 Identities=13% Similarity=0.099 Sum_probs=104.6
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHH-HHHHC-CCCEEEEEECHHHHHHHH-----HCCCCCEEE--ECHHHC-CCCCCC
Q ss_conf 99997501048975999653881113-55312-387488730589998323-----116862365--333656-775472
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFS-CFHGK-VERTLAFMPAGQGATNWP-----DQYFSSTAL--VSEGNL-PLADSS 95 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~-~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~~~--~d~~~L-Pf~~~s 95 (242)
+++-+.+.++.|..|+|+|||.||.. ..... ....+|+||..--..... -....+... --.|+| +...+.
T Consensus 111 DR~l~~~~pL~~~~i~DVGC~~GY~~~~M~~~Gak~~VG~DP~~L~~~QFE~~~~ll~~~~~~~l~~LGiE~l~~~~pnA 190 (316)
T TIGR00452 111 DRVLPHLSPLKGRTILDVGCGSGYHLWRMLGEGAKLLVGIDPTELFLCQFEAVRKLLDNDKRAILLPLGIEQLQELKPNA 190 (316)
T ss_pred HHHCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHCCCCC
T ss_conf 54312466545777898336870688977620782787436578999999999987242355754036702223207641
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH-----HHCCCCCCC-CCCHHHHHHHHHHCCCCC
Q ss_conf 02002202477522999999999984699988999733877403456-----532766565-578889999999628762
Q gi|254780582|r 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM-----EHTPFGSGQ-PYSWYQMISLLREANFTL 169 (242)
Q Consensus 96 fD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~-----~~~~~~~~r-~~~~~~l~~~l~~~gf~~ 169 (242)
||+|+|..||-|=..|-..|..+..-|+-+|.|++-+.=-.|.-... +...-.+.= -.|...|..|++..||+-
T Consensus 191 FD~vFs~GVLYHRkSPLe~L~~L~~~L~~~GELVL~TLviD~d~~~~LvP~~~YAkMkNVYFIPSv~aL~~Wl~kvGF~~ 270 (316)
T TIGR00452 191 FDTVFSLGVLYHRKSPLEHLKQLKDQLVKKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPSVSALKNWLEKVGFEN 270 (316)
T ss_pred CEEEEECCHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCEEECCCCCCCCEEEEEEHHHHHHHHHHHHHCCCCE
T ss_conf 20312202021155708999999999875793586534660776758647544422000142023899988887449531
Q ss_pred EEEEEEEEECC
Q ss_conf 12578983086
Q gi|254780582|r 170 SITSRSLFFPP 180 (242)
Q Consensus 170 ~~~~~~~~~pp 180 (242)
.++-...-.-+
T Consensus 271 ~~i~~V~~TT~ 281 (316)
T TIGR00452 271 VRILDVLKTTL 281 (316)
T ss_pred EEEEEEECCCH
T ss_conf 47875100372
No 39
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.12 E-value=5.4e-10 Score=77.11 Aligned_cols=136 Identities=16% Similarity=0.117 Sum_probs=89.7
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCC-CEEEEEECHHHHHHHHHC-----CC-CCEEEECHHHCCCCCCCCCCHHHHHH
Q ss_conf 010489759996538811135531238-748873058999832311-----68-62365333656775472020022024
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPFFSCFHGKVE-RTLAFMPAGQGATNWPDQ-----YF-SSTALVSEGNLPLADSSVDCVLMVHY 104 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~-~~~~~~d~~~LPf~~~sfD~Vi~~h~ 104 (242)
.+.....++||+|||.|-.+.++...+ .+.+.|.+..++.+.... .. ......|.+..+++ +.||.|++.-+
T Consensus 26 ~~~~~~g~~LDlgcG~Grna~~La~~G~~VtavD~s~~al~~~~~~a~~~~l~~v~~~~~Dl~~~~~~-~~yDlIlstvv 104 (198)
T PRK11207 26 VKVVKPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPMSIANLERIKAAENLDNLHTRVVDLNNLTFD-GEYDFILSTVV 104 (198)
T ss_pred HCCCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-CCCCEEEEEEE
T ss_conf 33589974777247887869999868985999979999999999999875998246562031238877-77058978645
Q ss_pred HHHHC--CHHHHHHHHHHHCCCCCEEEEEEC-CCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 77522--999999999984699988999733-877403456532766565578889999999628762125789
Q gi|254780582|r 105 LEFAE--DPFLMLHEIWRVLTSGGRMIVVVP-NKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 105 LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~-n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
+.|++ .-..++.++.+.++|||+++|+.. ...- ... +.+..-.|...+|++-. .|+++......
T Consensus 105 ~~fl~p~~~p~iia~mq~~t~PGG~~LIV~~~dt~d----~p~-~~~fpf~f~~gEL~~yy--~~W~il~YnE~ 171 (198)
T PRK11207 105 LMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTAD----YPC-TVGFPFAFKEGELRRYY--EGWEMVKYNED 171 (198)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHH----CCC-CCCCCCCCCHHHHHHHH--CCCEEEEECCC
T ss_conf 210486678999999999608994899999745423----789-98977766857999872--79979984315
No 40
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.11 E-value=4e-09 Score=72.11 Aligned_cols=172 Identities=13% Similarity=0.075 Sum_probs=123.6
Q ss_pred CCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHCC
Q ss_conf 986788999961288989999999999997501048975999653881113553123---87488730589998323116
Q gi|254780582|r 1 MRVDIVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQY 77 (242)
Q Consensus 1 M~~di~~l~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 77 (242)
|.+|...+-+|-+ ..-+-+. .|...++...-.++.|+|||+|...+++.+. ....++|-|..|+.+++...
T Consensus 1 ~~W~p~~Yl~F~~-eRtRPa~-----dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl 74 (257)
T COG4106 1 MDWNPDQYLQFED-ERTRPAR-----DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL 74 (257)
T ss_pred CCCCHHHHHHHHH-HCCCCHH-----HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHC
T ss_conf 9989899998777-5157388-----998647866641034557788778899998688886760469999999999748
Q ss_pred CC-CEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC-CHHHH-----HHCCC---
Q ss_conf 86-2365333656775472020022024775229999999999846999889997338774-03456-----53276---
Q gi|254780582|r 78 FS-STALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRG-MWARM-----EHTPF--- 147 (242)
Q Consensus 78 ~~-~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s-~w~~~-----~~~~~--- 147 (242)
.+ ....+|..++. ++..+|++++.-+|.+++|...+|....--|.|||.|.+-.|+.+- .+.+. +..||
T Consensus 75 p~~~f~~aDl~~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~ 153 (257)
T COG4106 75 PDATFEEADLRTWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQE 153 (257)
T ss_pred CCCCEECCCHHHCC-CCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHH
T ss_conf 99732105275449-98763303344366443640899999998508885699978876476457999998742836666
Q ss_pred ------CCCCCCCHHHHHHHHHHCCCCCEEEEEEEEEC
Q ss_conf ------65655788899999996287621257898308
Q gi|254780582|r 148 ------GSGQPYSWYQMISLLREANFTLSITSRSLFFP 179 (242)
Q Consensus 148 ------~~~r~~~~~~l~~~l~~~gf~~~~~~~~~~~p 179 (242)
......++...-++|...+-++.-+++..+.+
T Consensus 154 l~~~~~~r~~v~s~a~Yy~lLa~~~~rvDiW~T~Y~h~ 191 (257)
T COG4106 154 LGGRGLTRAPLPSPAAYYELLAPLACRVDIWHTTYYHQ 191 (257)
T ss_pred HCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEECCCC
T ss_conf 27665446778998999998576543255454123433
No 41
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.06 E-value=6.4e-10 Score=76.68 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHCC-----C-CCEEEECHHHCCCCCCCC
Q ss_conf 999975010489759996538811135531238---7488730589998323116-----8-623653336567754720
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQY-----F-SSTALVSEGNLPLADSSV 96 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~-~~~~~~d~~~LPf~~~sf 96 (242)
+.|.+.++...+.++||+|||+|.+...+.... ..+++|.+..++...+.+. . ...+.+|..+ ++++++|
T Consensus 21 ~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~-~~~~~~f 99 (170)
T pfam05175 21 RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYS-AVEPGKF 99 (170)
T ss_pred HHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCE
T ss_conf 999970897789949997764829899999978986798515449999999999998099848999744666-5778866
Q ss_pred CCHHHH---HHHHHH--CCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 200220---247752--2999999999984699988999733877
Q gi|254780582|r 97 DCVLMV---HYLEFA--EDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 97 D~Vi~~---h~LE~~--~dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
|.|++. |.=.-. +-.+.+++++.|.|+|||.+.++.=...
T Consensus 100 D~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l 144 (170)
T pfam05175 100 DLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIVANRHL 144 (170)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 089989772114203289999999999996164979999998999
No 42
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase; InterPro: IPR010251 Chlorophyll and bacteriochlorophyll are essential photosynthetic pigments involved in oxygenic and non-oxygenic photosythesis respectively. They are both synthesised from protoporphyrin IX in complex pathways which share many common steps. The second committed step in both pathways is the methylation of magnesium protoporphyrin IX, catalysed by magnesium protoporphyrin O-methyltransferase with S-adenosyl methionine (SAM) as the methyl donor , , .Sequence alignments suggest that the protein contains the characteristic seven-stranded beta-sheet fold found in other SAM-dependent methyltransferases. This entry represents magnesium protoporphyrin O-methyltransferase from cyanobacteria and plants, where it is known as ChlM, and from other photosynthetic bacteria, where it is known as BchM.; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=98.95 E-value=1e-08 Score=69.77 Aligned_cols=149 Identities=12% Similarity=0.007 Sum_probs=103.3
Q ss_pred HHHHHHHHCC-C--CCCCEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCC--------EEEECHHHCCC
Q ss_conf 9999997501-0--489759996538811135531-2387488730589998323116862--------36533365677
Q gi|254780582|r 24 ISKVLSTTWD-D--VTGCRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQYFSS--------TALVSEGNLPL 91 (242)
Q Consensus 24 ~~~~l~~~l~-~--~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~d~~~LPf 91 (242)
..+.+-.+++ + ..|.+|||-|||+|.++..++ ++.++.+.|.|.+++.......... ..+.|.+++
T Consensus 39 ~~~~~l~wL~~d~~l~G~~vlDAGCGtGllsi~LAk~GA~V~A~DIS~~mv~~A~~r~~~~~~~~nl~~FeV~Dl~s~-- 116 (224)
T TIGR02021 39 MREKLLEWLPKDRSLKGKKVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVELARERAEKEDEAGNLVEFEVNDLESL-- 116 (224)
T ss_pred HHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHHHHHCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCEEEECCHHHH--
T ss_conf 999999854678898767777558893154498884798686623768999999862100210167003545304441--
Q ss_pred CCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCC----CC-----CCCCCCHHHHHH
Q ss_conf 547202002202477522--9999999999846999889997338774034565327----66-----565578889999
Q gi|254780582|r 92 ADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTP----FG-----SGQPYSWYQMIS 160 (242)
Q Consensus 92 ~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~----~~-----~~r~~~~~~l~~ 160 (242)
.-+.||.|||..+|=|-+ |-..+|..+.-..+-- ++..|.|...|-..-+.. ++ .....+...+++
T Consensus 117 ~~G~fD~VV~mDvlIHYp~~d~~~~l~~Laslt~~~---~~ftfAP~T~~l~~~~~IG~lFP~s~R~t~~~~h~~~~~~R 193 (224)
T TIGR02021 117 ELGKFDAVVAMDVLIHYPAEDIAKALEHLASLTKER---VIFTFAPKTAYLAFLKAIGELFPRSDRATAIYLHPEKDLER 193 (224)
T ss_pred CCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHHCCC---EEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCHHHH
T ss_conf 389855567521223202222799999988743586---48986787678999998510278898885152078603889
Q ss_pred HHHHC----CCCCEEEEEEEE
Q ss_conf 99962----876212578983
Q gi|254780582|r 161 LLREA----NFTLSITSRSLF 177 (242)
Q Consensus 161 ~l~~~----gf~~~~~~~~~~ 177 (242)
.|... ||++.+......
T Consensus 194 ~l~~~eallG~~i~~~~~vS~ 214 (224)
T TIGR02021 194 ALGELEALLGWKISKEGRVST 214 (224)
T ss_pred HHHHHHHHHCCEEEEECCEEH
T ss_conf 976676663315663110322
No 43
>KOG3010 consensus
Probab=98.94 E-value=4.7e-09 Score=71.75 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=73.2
Q ss_pred CCC-EEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCEE-----EECHHHCCCC--CCCCCCHHHHHHHH
Q ss_conf 897-59996538811135531-238748873058999832311686236-----5333656775--47202002202477
Q gi|254780582|r 36 TGC-RLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQYFSSTA-----LVSEGNLPLA--DSSVDCVLMVHYLE 106 (242)
Q Consensus 36 ~g~-~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~LPf~--~~sfD~Vi~~h~LE 106 (242)
.+. .++|+|||+|.-..-.. ....+++.|+++.++............ ..+.+..++. ++|+|.|++..+++
T Consensus 32 ~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010 32 EGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHH
T ss_conf 88645888456887114788875434313068799999861189862045785345665653237876412110545677
Q ss_pred HHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 5229999999999846999889997338
Q gi|254780582|r 107 FAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 107 ~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
+. |...+.+++.||||++|.++.+...
T Consensus 112 WF-dle~fy~~~~rvLRk~Gg~iavW~Y 138 (261)
T KOG3010 112 WF-DLERFYKEAYRVLRKDGGLIAVWNY 138 (261)
T ss_pred HH-CHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 63-4299999999980778977999972
No 44
>KOG2361 consensus
Probab=98.90 E-value=1.1e-08 Score=69.52 Aligned_cols=169 Identities=11% Similarity=0.052 Sum_probs=102.3
Q ss_pred HHHHCCHHHHHH--HHHHHHHHHHHCCCCCCC--EEEEECCCCCHH-HHHHHC-C---CCEEEEEECHHHHHHHHHCCCC
Q ss_conf 996128898999--999999999750104897--599965388111-355312-3---8748873058999832311686
Q gi|254780582|r 9 RQFYSSFLGKCT--TDAISKVLSTTWDDVTGC--RLLGLGYAIPFF-SCFHGK-V---ERTLAFMPAGQGATNWPDQYFS 79 (242)
Q Consensus 9 ~~wY~s~~G~~~--~~~~~~~l~~~l~~~~g~--~vLdiGcg~g~~-~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~ 79 (242)
+.||-....+.+ +.++.+.+..+.+..... ++|++|||.|.. ...+.. . ...+++|-++.++.........
T Consensus 40 D~fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~ 119 (264)
T KOG2361 40 DTFYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY 119 (264)
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHHCCCC
T ss_conf 56665324545311677877567750755557345112224777512244424899873899748986899998736332
Q ss_pred -----CEEEE----CHHHCCCCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCC--
Q ss_conf -----23653----3365677547202002202477522--9999999999846999889997338774034565327--
Q gi|254780582|r 80 -----STALV----SEGNLPLADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTP-- 146 (242)
Q Consensus 80 -----~~~~~----d~~~LPf~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~-- 146 (242)
...+. +.-.-|.+.+|+|.+++..+|--+. .-..++..+.++|||||.|++--.-..-+-..+-+..
T Consensus 120 ~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~~~ 199 (264)
T KOG2361 120 DESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKGQC 199 (264)
T ss_pred CHHHHCCCCEECCCHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCCE
T ss_conf 64550120001656010378886763347899987514847789999999997488867998414543478875157743
Q ss_pred ----C---CC---CCCCCHHHHHHHHHHCCCCCEEEEEEEE
Q ss_conf ----6---65---6557888999999962876212578983
Q gi|254780582|r 147 ----F---GS---GQPYSWYQMISLLREANFTLSITSRSLF 177 (242)
Q Consensus 147 ----~---~~---~r~~~~~~l~~~l~~~gf~~~~~~~~~~ 177 (242)
+ +. .=+|+...|..|+..+||+.++.....-
T Consensus 200 i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~~~~~r 240 (264)
T KOG2361 200 ISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQLEVDCR 240 (264)
T ss_pred EECCEEECCCCCEEEECCHHHHHHHHHHCCCCHHCCCCEEE
T ss_conf 20145881699665223688999998751532100441034
No 45
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=98.85 E-value=5.7e-10 Score=76.98 Aligned_cols=152 Identities=18% Similarity=0.282 Sum_probs=88.2
Q ss_pred HHHHHHCCCC----CCCEEEEECCCCCHHHHHHHCC-CCEEEEEE--CHHHHHHHHHCCC--CCEEEECHHHCCCCCCCC
Q ss_conf 9999750104----8975999653881113553123-87488730--5899983231168--623653336567754720
Q gi|254780582|r 26 KVLSTTWDDV----TGCRLLGLGYAIPFFSCFHGKV-ERTLAFMP--AGQGATNWPDQYF--SSTALVSEGNLPLADSSV 96 (242)
Q Consensus 26 ~~l~~~l~~~----~g~~vLdiGcg~g~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~--~~~~~~d~~~LPf~~~sf 96 (242)
+.|.++++.. .-.++||+|||.+-+..++... -..+++-| +.++....+-..+ ..........|||++.||
T Consensus 103 d~i~~~ip~~~~~~~vRt~LDvGCGVASfGayLl~r~vltMS~AP~D~HeaQVQfALERGiPA~igvlgT~rLPyPs~sF 182 (506)
T pfam03141 103 DFLAQVIPLIAWGGRVRTALDVGCGVASFGAYLLSRDVLTMSFAPKDVHEAQVQFALERGVPAMLGVLGTRRLPYPSRSF 182 (506)
T ss_pred HHHHHHCCCCCCCCCEEEEEECCCCEECHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCC
T ss_conf 99998567555798568999768872103777632784588734764118889999971852566564035358875330
Q ss_pred CCHHHHHHH-HHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE--E
Q ss_conf 200220247-7522999999999984699988999733877403456532766565578889999999628762125--7
Q gi|254780582|r 97 DCVLMVHYL-EFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSIT--S 173 (242)
Q Consensus 97 D~Vi~~h~L-E~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~--~ 173 (242)
|.|=|+-++ .+..+....|-|+.|||+|||+++.+.|--. + +... ...--...+.++.+..-++.... .
T Consensus 183 Dm~HCsRC~IpW~~~dG~~LlEvdRvLRPGGYfV~S~pPv~--~-~~~~-----~~~~~~~~~~~l~~~mCW~~v~~~~~ 254 (506)
T pfam03141 183 DMAHCSRCLIPWHANDGILLLEVDRVLRPGGYFVLSGPPVY--A-RDEE-----DLQEEWKAMEALAKSLCWKLVAKKGD 254 (506)
T ss_pred CHHHHCCCCCCCCCCCCEEEEEEEHCCCCCCEEEECCCCCC--C-CCHH-----HHHHHHHHHHHHHHHHHHHEEEEECC
T ss_conf 12442245674104797788654000047866994678655--6-6646-----68999999999999855302677588
Q ss_pred EEEEECCCCCHH
Q ss_conf 898308655246
Q gi|254780582|r 174 RSLFFPPTHKKC 185 (242)
Q Consensus 174 ~~~~~pp~~~~~ 185 (242)
.+.+.=|.+...
T Consensus 255 ~aIwqKp~~~~C 266 (506)
T pfam03141 255 IAIWQKPVNNSC 266 (506)
T ss_pred EEEEECCCCHHH
T ss_conf 899978798478
No 46
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=98.80 E-value=8.3e-09 Score=70.33 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=89.1
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCC----CEEEEC-HHHCCCCCCCCCCHHHHHH
Q ss_conf 5010489759996538811135531-238748873058999832311686----236533-3656775472020022024
Q gi|254780582|r 31 TWDDVTGCRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQYFS----STALVS-EGNLPLADSSVDCVLMVHY 104 (242)
Q Consensus 31 ~l~~~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d-~~~LPf~~~sfD~Vi~~h~ 104 (242)
.++...=.++|++||+.|.+...+. +..+.+++|.+...+...+..... ...+.+ .++ .++++||.||++.+
T Consensus 38 aLp~~ry~~alE~GCa~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~Rla~~~hV~v~~~~vp~~--wP~~~FDLIV~SEV 115 (201)
T pfam05401 38 SLAQGTIANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARARLRMKKWSHISWIVSDVQQF--STNELFDLIVVAEV 115 (201)
T ss_pred HCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCEEEEEEEHH
T ss_conf 6783433002043566248789999987467321362999999999855799828982566665--99888627975147
Q ss_pred HHHHCC---HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 775229---999999999846999889997338774034565327665655788899999996287621257
Q gi|254780582|r 105 LEFAED---PFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 105 LE~~~d---p~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
+-+..| -+.+++.+-+.|.|||.|++.-.--.+. + .++| .....-+..+|++.--+|+..+
T Consensus 116 lYYL~d~a~lr~~~~~~v~~LaP~G~Lvfgsarda~c---r---rwgh--~~gaetv~~~~~e~l~eve~~~ 179 (201)
T pfam05401 116 LYYLGDVAEMRGAVRNLVSMLAPDGQLVFGSARDANC---R---RWGH--VAGAETVIALLNESLREVERRE 179 (201)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH---H---HHCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7861879999999999999718996599730451066---5---5101--1118999999998877887765
No 47
>PRK06922 hypothetical protein; Provisional
Probab=98.76 E-value=3.1e-08 Score=67.05 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=73.8
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHH-----HCCCCCEEEECHHHCC--CCCCCCCCHHH
Q ss_conf 0104897599965388111355312---387488730589998323-----1168623653336567--75472020022
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWP-----DQYFSSTALVSEGNLP--LADSSVDCVLM 101 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~LP--f~~~sfD~Vi~ 101 (242)
++-..|.+++|+|.|.|.....+.. ....+++|.|.+-..... ....-.+..+|+-+|+ |+.+|+|.|++
T Consensus 416 ldyi~G~~ivdiG~GGGVMldli~E~~p~~~i~GIDiS~NVIe~L~kkK~~e~ksW~V~~gDAL~l~d~f~~eSvdTiv~ 495 (679)
T PRK06922 416 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVY 495 (679)
T ss_pred EECCCCCEEEEECCCCCHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHCCCCCCCEEEE
T ss_conf 20014767998669962148766765899861466660889999988777548984232143036154347566646874
Q ss_pred HHHHHHH----C---------CHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0247752----2---------9999999999846999889997
Q gi|254780582|r 102 VHYLEFA----E---------DPFLMLHEIWRVLTSGGRMIVV 131 (242)
Q Consensus 102 ~h~LE~~----~---------dp~~~L~Ei~RvLkPgG~lii~ 131 (242)
+.+|+-. + --.+.|+.+.+||+|||++||-
T Consensus 496 sSIlHElfSYie~dGkkfN~~vi~~~l~Saf~vLkpGGRiIIR 538 (679)
T PRK06922 496 SSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 538 (679)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 2778888863456671347999999999999872888649994
No 48
>pfam03291 Pox_MCEL mRNA capping enzyme. This family of enzymes are related to pfam03919.
Probab=98.73 E-value=1.7e-07 Score=62.87 Aligned_cols=144 Identities=15% Similarity=0.196 Sum_probs=93.9
Q ss_pred CCCCCCCEEEEECCCCCH-HHHHH-HCCCCEEEEEECHHHHHHHHHCCC----------------CCEEEEC------HH
Q ss_conf 010489759996538811-13553-123874887305899983231168----------------6236533------36
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPF-FSCFH-GKVERTLAFMPAGQGATNWPDQYF----------------SSTALVS------EG 87 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~d------~~ 87 (242)
.....+.+|||+|||-|. +.... ......+++|++...+..+..... ...+.+| .+
T Consensus 59 ~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vgiDis~~sI~~A~~RY~~~~~~~~~~~~~~~f~~~f~~~D~~~~~l~~ 138 (327)
T pfam03291 59 FQDKPKRKVLDLDCGKGGDLEKYFKGGISGLIGTDIAEVSIEQAQERYNDLNSRSKSKYYKFDFIAEFITGDCFVSSVRE 138 (327)
T ss_pred HCCCCCCEEEEECCCCCCCHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 14688987998368664457889747986899966899999999999998642114444566750012315621567877
Q ss_pred HCCCCCCCCCCHHHHHHHHHHCC----HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH-------------------
Q ss_conf 56775472020022024775229----9999999998469998899973387740345653-------------------
Q gi|254780582|r 88 NLPLADSSVDCVLMVHYLEFAED----PFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEH------------------- 144 (242)
Q Consensus 88 ~LPf~~~sfD~Vi~~h~LE~~~d----p~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~------------------- 144 (242)
.++.....||+|-|..+++++=+ -..+|+.+...|+|||++|.+.||-.-++.+.+.
T Consensus 139 ~~~~~~~~FDvVS~QFAiHY~Fese~~a~~~l~Nvs~~Lk~GG~FIGT~~d~~~i~~~l~~~~~~~~~~gN~~y~i~f~~ 218 (327)
T pfam03291 139 VFEPGQRKFDIVSWQFAIHYSFESEEKARTMLRNLAELLASGGKFIGTTPDGDFIIKKLTATFVEHKSFGNSIYYVSFEK 218 (327)
T ss_pred HCCCCCCCCCEEEHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCEEEEEEECC
T ss_conf 53577885037751787898764899999999999986058988999966789999999860345320586038999468
Q ss_pred ----CCCCCC-C------------C-CCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf ----276656-5------------5-78889999999628762125789
Q gi|254780582|r 145 ----TPFGSG-Q------------P-YSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 145 ----~~~~~~-r------------~-~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
.+|+.. . + .....+.+++++.||+......+
T Consensus 219 ~~~~~~fG~~y~f~l~~~v~~~~EYlV~~~~~~~l~~eygleLv~~~~F 267 (327)
T pfam03291 219 DPPRPPFGIKYVYNLEDMVTDVPEYLVPFETLVELAEEYGLELVDKKTF 267 (327)
T ss_pred CCCCCCCCCEEEEEECCCCCCCCEEECCHHHHHHHHHHCCCEEEEECCH
T ss_conf 8999999867999972117888731367999999999859899994687
No 49
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.73 E-value=9.3e-08 Score=64.33 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=73.1
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHC-----CCC-CEEEECHHHCCCCCC
Q ss_conf 99999750104897599965388111355312----38748873058999832311-----686-236533365677547
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQ-----YFS-STALVSEGNLPLADS 94 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~d~~~LPf~~~ 94 (242)
...+-+.++..+|.+||+||||+||....++. .+++++++.....+....+. ..+ ..+.+|...-.-+..
T Consensus 65 ~a~ml~~L~l~~~~~VLeIGtGsGY~tAlla~lvg~~g~V~siE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~G~~~~a 144 (214)
T PRK13942 65 VAIMCELLDLDEGQKVLEIGTGSGYHAAVVAEIVGKSGKVTTIERIPELAEKAKKNLKKLGYENVEVILGDGTKGYEENA 144 (214)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC
T ss_conf 99999972799999799967995299999999747678579997179999999999986376875898567566784459
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 2020022024775229999999999846999889997338
Q gi|254780582|r 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 95 sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
.||.|++....+.+ |..+ ..-|++||+|++-+-+
T Consensus 145 pfD~Iiv~aa~~~i--P~~l----~~qL~~gGrLV~Pvg~ 178 (214)
T PRK13942 145 PYDRIYVTAAGPDI--PKPL----LEQLKDGGIMVIPVGS 178 (214)
T ss_pred CCCEEEEEECCCCC--CHHH----HHHCCCCCEEEEEECC
T ss_conf 81279998517657--8999----9962889589999889
No 50
>KOG1541 consensus
Probab=98.71 E-value=6.5e-08 Score=65.22 Aligned_cols=102 Identities=11% Similarity=0.129 Sum_probs=73.0
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCCCEEE-EEECHHHHHHHH-HCCCCCEEEEC-HHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 0104897599965388111355312387488-730589998323-11686236533-36567754720200220247752
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPFFSCFHGKVERTLA-FMPAGQGATNWP-DQYFSSTALVS-EGNLPLADSSVDCVLMVHYLEFA 108 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~d-~~~LPf~~~sfD~Vi~~h~LE~~ 108 (242)
++.-...-+||||||+|.-...+...++.+. +|.++.++.... .......+.+| .+-+||...+||.||+..++.+.
T Consensus 46 lp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWL 125 (270)
T KOG1541 46 LPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWL 125 (270)
T ss_pred CCCCCCCEEEEECCCCCCCHHEECCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 89988717998345777432002168955886228989999999766404766312478878899741247886203210
Q ss_pred -------CCHHH----HHHHHHHHCCCCCEEEEEEC
Q ss_conf -------29999----99999984699988999733
Q gi|254780582|r 109 -------EDPFL----MLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 109 -------~dp~~----~L~Ei~RvLkPgG~lii~~~ 133 (242)
++|.. ++.....+|++|++.++-..
T Consensus 126 cnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfY 161 (270)
T KOG1541 126 CNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFY 161 (270)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 146844467389999986645321036861588852
No 51
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=7.9e-08 Score=64.75 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=78.6
Q ss_pred CCCEEEEECCCCCHHHHHHHC--CCCEEEEEECHHHHHHHHHCCCCCEEE----EC-HHHCCCCC-CCCCCHHHHHHHHH
Q ss_conf 897599965388111355312--387488730589998323116862365----33-36567754-72020022024775
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGK--VERTLAFMPAGQGATNWPDQYFSSTAL----VS-EGNLPLAD-SSVDCVLMVHYLEF 107 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d-~~~LPf~~-~sfD~Vi~~h~LE~ 107 (242)
.|.++||+|||+|.++..... +..+++.|.++..+...+.+...+.+. .. ...+.... ..||+||+.=.=+-
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANILA~v 241 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANILAEV 241 (300)
T ss_pred CCCEEEEECCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCCCHHHCCCCCCCEEEEHHHHHH
T ss_conf 89879982678159999999819866899718889999999999976996022003456300013686568986052789
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 2299999999998469998899973387740345653276656557888999999962876212578
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
-..+..++.+.++|||++++++.-. + -...+.+.+...||++.....
T Consensus 242 ---l~~La~~~~~~lkpgg~lIlSGIl~-------~----------q~~~V~~a~~~~gf~v~~~~~ 288 (300)
T COG2264 242 ---LVELAPDIKRLLKPGGRLILSGILE-------D----------QAESVAEAYEQAGFEVVEVLE 288 (300)
T ss_pred ---HHHHHHHHHHHCCCCCEEEEEEECH-------H----------HHHHHHHHHHHCCCEEEEEEE
T ss_conf ---9999999998708893699986207-------5----------899999999858976868970
No 52
>pfam06080 DUF938 Protein of unknown function (DUF938). This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.68 E-value=2.7e-07 Score=61.73 Aligned_cols=155 Identities=15% Similarity=0.207 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCEEEE---EECHH---HHHHHHHCCCC----CEEEEC-
Q ss_conf 89999999999997501048975999653881113553123874887---30589---99832311686----236533-
Q gi|254780582|r 17 GKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERTLAF---MPAGQ---GATNWPDQYFS----STALVS- 85 (242)
Q Consensus 17 G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~----~~~~~d- 85 (242)
-.+-++-|.+.|.++++. .|.+|||||+|+|.=..+.......+.- |++.. ....+...... ..+..|
T Consensus 7 aeRNk~pIl~vL~~~l~~-~~~~VLEIaSGTGQHav~fA~~lP~l~WqPSD~~~~~~~sI~aw~~~~~l~Nl~~P~~LDv 85 (201)
T pfam06080 7 AERNREPILSVLQSYFAK-TTERVLEIASGTGQHAVFFAPLLPNLTWQPSDPDPNLRGSIAAWADQQGLRNLRPPLHLDV 85 (201)
T ss_pred HHHHHHHHHHHHHHHHCC-CCCCEEEECCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEC
T ss_conf 673588999999998274-7885799768726999999987899885158888778999999987437776688737632
Q ss_pred -HHHCCCC---CCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCC-H----------HHHHHCCCC
Q ss_conf -3656775---47202002202477522--99999999998469998899973387740-3----------456532766
Q gi|254780582|r 86 -EGNLPLA---DSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGM-W----------ARMEHTPFG 148 (242)
Q Consensus 86 -~~~LPf~---~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~-w----------~~~~~~~~~ 148 (242)
...+|.+ .++||.|++.++++.++ .-..+++++.|+|+|||.|++-+|-...- . .++...|-|
T Consensus 86 ~~~~w~~~~~~~~~~dai~~iN~lHI~pw~~~~~lf~ga~~~L~~gG~l~lYGPF~~~G~~ts~SN~~FD~~Lr~~dp~~ 165 (201)
T pfam06080 86 TRPPWPVEAPAPASYDAIFSINMIHISPWSCVEGLFRGAGRLLPPGGVLYIYGPYNQDGELTSDSNRDFDRSLRQRDPEW 165 (201)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCHHHHHHHHHHHCCCCC
T ss_conf 78998755566766002330025773789999999999999851588268746502599768825899999998509633
Q ss_pred CCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 56557888999999962876212578
Q gi|254780582|r 149 SGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 149 ~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
-.| ....+.++...+|++......
T Consensus 166 GiR--D~e~v~~lA~~~GL~l~~~~~ 189 (201)
T pfam06080 166 GIR--DIEDVIALAAAQGLQLVKDVD 189 (201)
T ss_pred CCC--CHHHHHHHHHHCCCCCCCCCC
T ss_conf 783--899999999987997686650
No 53
>pfam03848 TehB Tellurite resistance protein TehB.
Probab=98.67 E-value=1.2e-07 Score=63.61 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=91.0
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHHCCC-CEEEEEECHHHHHHHH-----HCCCCCEEEECHHHCCCCCCCCCCHHHHHH
Q ss_conf 5010489759996538811135531238-7488730589998323-----116862365333656775472020022024
Q gi|254780582|r 31 TWDDVTGCRLLGLGYAIPFFSCFHGKVE-RTLAFMPAGQGATNWP-----DQYFSSTALVSEGNLPLADSSVDCVLMVHY 104 (242)
Q Consensus 31 ~l~~~~g~~vLdiGcg~g~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~ 104 (242)
..+...+.++||+|||.|..+.+++..+ .+.+.|-+..++.... +.-.....+.|.+++.++. .+|.|++.-|
T Consensus 25 a~~~i~pgk~LDlgcG~GRNslyLa~~G~~VtavD~n~~aL~~l~~ia~~e~l~i~~~~~Din~~~~~e-~YD~IisTVv 103 (192)
T pfam03848 25 AVKTVKPGKALDLGCGQGRNSLFLSLLGYDVTAVDHNENSIANLQDIKEKENLDIPTALYDINSASIDE-NYDFILSTVV 103 (192)
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCC-CCCEEEEEEE
T ss_conf 986379974666047897318999868991799979999999999999970997526873155568767-7687988887
Q ss_pred HHHHCC--HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 775229--9999999998469998899973387740345653276656557888999999962876212578
Q gi|254780582|r 105 LEFAED--PFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 105 LE~~~d--p~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
+-|.+- -..++..+.+.++|||..+|..+--.--.+.- .+| .-.+.+.+|.+.- .|+++.....
T Consensus 104 fmFL~~~~ip~iI~~mq~~T~pGGynlIv~am~t~d~pc~--~~f--~ftfk~gEL~~yy--~~WeilkYnE 169 (192)
T pfam03848 104 LMFLQAERIPAIIANMQEHTNVGGYNLIVAAMSTADYPCT--VPF--SFTFKEGELKRYY--QDWELLKYNE 169 (192)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCC--CCC--CCCCCHHHHHHHH--CCCEEEEECC
T ss_conf 7731867877999999985289988999976145537899--898--8778801899973--8987998537
No 54
>KOG1269 consensus
Probab=98.66 E-value=2.5e-08 Score=67.59 Aligned_cols=143 Identities=18% Similarity=0.138 Sum_probs=91.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHC--CCCEEEEEECHHHHHHHH-------HCCCCCEEEECHHHCCCCCCCCCCHHHHH
Q ss_conf 104897599965388111355312--387488730589998323-------11686236533365677547202002202
Q gi|254780582|r 33 DDVTGCRLLGLGYAIPFFSCFHGK--VERTLAFMPAGQGATNWP-------DQYFSSTALVSEGNLPLADSSVDCVLMVH 103 (242)
Q Consensus 33 ~~~~g~~vLdiGcg~g~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h 103 (242)
...+|..++++|||.|....+... .....+++.+...+.... -...+..+.++.-+.||+++.||.+-+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCCCCCCCCCCEEEEE
T ss_conf 27654111224767675167788862577517876799999988777888764202352255514887746667489876
Q ss_pred HHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCC------HHHHHHCCCCCCC----CCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 47752299999999998469998899973387740------3456532766565----5788899999996287621257
Q gi|254780582|r 104 YLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM------WARMEHTPFGSGQ----PYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 104 ~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~------w~~~~~~~~~~~r----~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
+.+|.+++..+++|++||++|||..+.-.+....- +...-...+..+- ....--+.+.++..+|+....+
T Consensus 187 ~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~ 266 (364)
T KOG1269 187 VVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLE 266 (364)
T ss_pred ECCCCCCHHHHHHHHHCCCCCCCEEEEHHHHHHHHCCCCCCCCCCCCCCEECCCCCCCEECCCCHHHHHHHCCCHHHHHC
T ss_conf 12447869999998850367771688488887652147972011046736302321230114139988765030342223
Q ss_pred EE
Q ss_conf 89
Q gi|254780582|r 174 RS 175 (242)
Q Consensus 174 ~~ 175 (242)
..
T Consensus 267 ~d 268 (364)
T KOG1269 267 KD 268 (364)
T ss_pred CC
T ss_conf 43
No 55
>KOG3987 consensus
Probab=98.66 E-value=3.2e-08 Score=67.00 Aligned_cols=141 Identities=21% Similarity=0.249 Sum_probs=94.1
Q ss_pred CCEEEEECCCCCHHHHHHHCCC-CEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHHH
Q ss_conf 9759996538811135531238-748873058999832311686236533365677547202002202477522999999
Q gi|254780582|r 37 GCRLLGLGYAIPFFSCFHGKVE-RTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLML 115 (242)
Q Consensus 37 g~~vLdiGcg~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L 115 (242)
..++||+|+|.|.....++... ++.+-..+..+.-+.... +-.++...| +--.+-.+|+|.|.++|+-+.+|-.+|
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk--~ynVl~~~e-w~~t~~k~dli~clNlLDRc~~p~kLL 189 (288)
T KOG3987 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK--NYNVLTEIE-WLQTDVKLDLILCLNLLDRCFDPFKLL 189 (288)
T ss_pred CEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHC--CCCEEEEHH-HHHCCCEEEHHHHHHHHHHHCCHHHHH
T ss_conf 70688616788610012142189999987669999998652--773665003-331372231588877887506767799
Q ss_pred HHHHHHCCC-CCEEEEEEC---------CCCCCHHHHHHCCCCCCCCCC--HHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 999984699-988999733---------877403456532766565578--88999999962876212578983086
Q gi|254780582|r 116 HEIWRVLTS-GGRMIVVVP---------NKRGMWARMEHTPFGSGQPYS--WYQMISLLREANFTLSITSRSLFFPP 180 (242)
Q Consensus 116 ~Ei~RvLkP-gG~lii~~~---------n~~s~w~~~~~~~~~~~r~~~--~~~l~~~l~~~gf~~~~~~~~~~~pp 180 (242)
+.|+-||+| .|++|+... |+.+.|.+-+...-..+|-|. ..++-+.|+.+||.++.+...-|...
T Consensus 190 ~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veawTrlPYLCE 266 (288)
T KOG3987 190 EDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAWTRLPYLCE 266 (288)
T ss_pred HHHHHHHCCCCCCEEEEEEECCCCEEECCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCEECC
T ss_conf 99999846478848999984242114307899868806888735853899998899999863702445514872125
No 56
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.64 E-value=1.5e-07 Score=63.20 Aligned_cols=127 Identities=13% Similarity=0.082 Sum_probs=83.1
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHH--CCCCEEEEEECHHHHHHHHHC---CCCC-EEEECHHHCCCCCCCCCCH
Q ss_conf 999975010489759996538811135531--238748873058999832311---6862-3653336567754720200
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHG--KVERTLAFMPAGQGATNWPDQ---YFSS-TALVSEGNLPLADSSVDCV 99 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~d~~~LPf~~~sfD~V 99 (242)
+.|.++ ...|.+|||+|||+|.++.... .+.++.++|.++..+.....+ +... .+.....+....+..||+|
T Consensus 154 ~~l~~~--~~~~~~vLDvG~GSGILaIaA~klGa~~v~a~DiD~~Av~~a~eN~~lN~v~~~~~~~~~~~~~~~~~~Dlv 231 (298)
T PRK00517 154 EWLEKL--VLPGKTVLDVGCGSGILAIAAAKLGAKPVLAIDIDPQAVEAARENAELNGVDDRLELYLPEDQPLEGKADVI 231 (298)
T ss_pred HHHHHH--CCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCEE
T ss_conf 999843--546886887157706999999974998499998989999999999998699842689616643446764689
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 220247752299999999998469998899973387740345653276656557888999999962876212578
Q gi|254780582|r 100 LMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 100 i~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
++.=..+- -.....++.+.|+|||++++++.-. --...+.+.++..||++.....
T Consensus 232 vANIla~v---l~~l~~~~~~~l~~~G~lilSGIl~-----------------~~~~~v~~~~~~~g~~~~~~~~ 286 (298)
T PRK00517 232 VANILANP---LIELAPDLAALVKPGGRLILSGILA-----------------EQADEVLEAYEDAGFTLDEVAE 286 (298)
T ss_pred EEECCHHH---HHHHHHHHHHHHCCCCEEEEECCCH-----------------HHHHHHHHHHHHCCCEEEEEEE
T ss_conf 97315899---9999999999738997999927848-----------------8999999999987998978860
No 57
>pfam01234 NNMT_PNMT_TEMT NNMT/PNMT/TEMT family.
Probab=98.63 E-value=1e-06 Score=58.37 Aligned_cols=193 Identities=18% Similarity=0.218 Sum_probs=107.7
Q ss_pred CCCHHH-HHHHHCCHHHHH----HHHHHHHHHHHHCC--CCCCCEEEEECCCCCHHH--HHHHCCCCEEEEEECHHH---
Q ss_conf 867889-999612889899----99999999997501--048975999653881113--553123874887305899---
Q gi|254780582|r 2 RVDIVE-LRQFYSSFLGKC----TTDAISKVLSTTWD--DVTGCRLLGLGYAIPFFS--CFHGKVERTLAFMPAGQG--- 69 (242)
Q Consensus 2 ~~di~~-l~~wY~s~~G~~----~~~~~~~~l~~~l~--~~~g~~vLdiGcg~g~~~--~~~~~~~~~~~~~~~~~~--- 69 (242)
++|..+ |+.||..+-|.. +.......+.+... ...|.++||||+|.-... .........+..+...++
T Consensus 15 ~F~p~~YL~~yy~~~~~~~~~~~~~~f~l~~l~~~f~~g~~kg~~LiDvG~GPtiy~~lsA~~~f~~I~lsDy~~~Nr~e 94 (261)
T pfam01234 15 KFNPRAYLNTYYKFASGDAAEMQIVLFFLPNLLQTFGPGGVKGDTLIDIGSGPTIYQLLSACEVFKEIHLSDYLPQNRDE 94 (261)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHCCEEEECCCCHHHHHH
T ss_conf 17979999985488877743232337889999998377874666899847894588887677650717860255767999
Q ss_pred HHHHHHCC---------------------------------CCCEEEECHHH-CCC----CCCCCCCHHHHHHHHHH-CC
Q ss_conf 98323116---------------------------------86236533365-677----54720200220247752-29
Q gi|254780582|r 70 ATNWPDQY---------------------------------FSSTALVSEGN-LPL----ADSSVDCVLMVHYLEFA-ED 110 (242)
Q Consensus 70 ~~~~~~~~---------------------------------~~~~~~~d~~~-LPf----~~~sfD~Vi~~h~LE~~-~d 110 (242)
+.+|-+.. ....+.||..+ =|+ .-..||+|++.-+||.+ +|
T Consensus 95 l~kWl~~ep~afDWs~~~~~v~~lEG~~~~~~e~ee~lR~~Ik~Vl~cDV~~~~pl~~~~~lp~~D~v~S~~cLE~ac~d 174 (261)
T pfam01234 95 LIKWLKKEPGAFDWSPVLKHICELEGDRECWQEKEEKLRALVKRVLKCDVHQSPPLGAGVQLPPADCVVTIFCLEYACPD 174 (261)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCCCCEEEEEEEHHHHCCC
T ss_conf 99997069986666199999986226764157888999988644887655688888886667885588476225566199
Q ss_pred H---HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCHHHH
Q ss_conf 9---9999999984699988999733877403456532766565578889999999628762125789830865524676
Q gi|254780582|r 111 P---FLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCIL 187 (242)
Q Consensus 111 p---~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~~~~~pp~~~~~~~ 187 (242)
. ..+++.+...|||||+||+.+---.+.+.-.. ..|. .-..+...+++-|+.+||.++..+. .|- ...
T Consensus 175 ~~~Y~~av~ni~~LLkpGG~Lil~gvl~~t~Y~vG~-~~F~-~l~l~ee~v~~Al~~aG~~i~~~~~---~~~-~~~--- 245 (261)
T pfam01234 175 LEEYCRALRNLASLLKPGGHLVLGGVLEESWYMFGE-KKFS-CLYLSKEVVEDALVDAGLDVEALQI---MPQ-SYS--- 245 (261)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEECC-EECC-EEECCHHHHHHHHHHCCCEEEEEEE---ECC-CCC---
T ss_conf 999999999998647888469999861773488789-8602-2522899999999977977899786---224-357---
Q ss_pred HHHHHHHHHHHHHHHHCCEEEEEEEEE
Q ss_conf 315899999976113214389999997
Q gi|254780582|r 188 KLWSVFEKIGNIFGPGFAGIYVIEARK 214 (242)
Q Consensus 188 ~~~~~~e~~~~~~~p~~g~~~~i~a~K 214 (242)
. . .--.-|+++++|+|
T Consensus 246 ---~---~-----~~d~~~~f~l~arK 261 (261)
T pfam01234 246 ---Y---K-----VADHDGVFFLVARK 261 (261)
T ss_pred ---C---C-----CCCCCCEEEEEEEC
T ss_conf ---7---6-----44667449999829
No 58
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.61 E-value=4.8e-08 Score=65.96 Aligned_cols=91 Identities=22% Similarity=0.271 Sum_probs=61.4
Q ss_pred CEEEEC-HHHCCCCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHC----CCC----
Q ss_conf 236533-365677547202002202477522--999999999984699988999733877403456532----766----
Q gi|254780582|r 80 STALVS-EGNLPLADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHT----PFG---- 148 (242)
Q Consensus 80 ~~~~~d-~~~LPf~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~----~~~---- 148 (242)
...+++ ....+|.++|.|++.+.|+|||.. .-..+++|++|+|||||+|-+.+|.-..+-..+... .+|
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndh 110 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDH 110 (185)
T ss_pred CCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 21312145544588760678999999988769988999999999708675899974875204777744553069898888
Q ss_pred --CCCCCCHHHHHHHHHHCCCCCE
Q ss_conf --5655788899999996287621
Q gi|254780582|r 149 --SGQPYSWYQMISLLREANFTLS 170 (242)
Q Consensus 149 --~~r~~~~~~l~~~l~~~gf~~~ 170 (242)
|..-++.+.+.+....+||.+-
T Consensus 111 P~~r~v~t~r~m~n~~m~~~~~~k 134 (185)
T COG4627 111 PLHRIVKTMRMMFNGFMDAGFVVK 134 (185)
T ss_pred CHHHHHHHHHHHHHHHHHHHHEEH
T ss_conf 078999999999878876301221
No 59
>pfam01135 PCMT Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT).
Probab=98.60 E-value=3.3e-07 Score=61.22 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=69.8
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHC-----C-CCCEEEECHHHCCCCC
Q ss_conf 999999750104897599965388111355312----38748873058999832311-----6-8623653336567754
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQ-----Y-FSSTALVSEGNLPLAD 93 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~d~~~LPf~~ 93 (242)
+..++-+.+...+|.+||+||||+||....++. .+.+++++.....+...... . ....+.+|..+---+.
T Consensus 61 ~~a~ml~~L~l~~g~~VLeIGtGsGY~tAlLa~l~~~~g~V~~iE~~~~l~~~A~~~l~~~~~~nV~~~~gdg~~g~~~~ 140 (205)
T pfam01135 61 MHAMMLELLELKPGMRVLEIGSGSGYLTACFARMVGEVGRVVSIEHIPELVEIARRNLEKLGLENVIVVVGDGRQGWPEF 140 (205)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 99999997078999989996699659999999983878769998358999999999999848886589845645588333
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 7202002202477522999999999984699988999733
Q gi|254780582|r 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 94 ~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
..||.|++.-+.+.+ |..+++ -|++||+|++-+-
T Consensus 141 apfD~Iiv~aa~~~i--P~~l~~----qL~~gGrLv~pvg 174 (205)
T pfam01135 141 APYDAIHVGAAAPEI--PEALID----QLKEGGRLVIPVG 174 (205)
T ss_pred CCCCEEEEEEECCCC--CHHHHH----HCCCCCEEEEEEC
T ss_conf 980589997506768--899999----6287978999987
No 60
>pfam06325 PrmA Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.
Probab=98.59 E-value=2e-07 Score=62.47 Aligned_cols=124 Identities=11% Similarity=0.110 Sum_probs=77.6
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHH--CCCCEEEEEECHHHHHHHHHCC---CCC-EE-EECHHHCCCCCCCCCC
Q ss_conf 999975010489759996538811135531--2387488730589998323116---862-36-5333656775472020
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHG--KVERTLAFMPAGQGATNWPDQY---FSS-TA-LVSEGNLPLADSSVDC 98 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-~~d~~~LPf~~~sfD~ 98 (242)
+.|.++ ...|.+|||+|||+|.++.... .+.++.++|.++..+.....+. ... .+ .....+ .....||+
T Consensus 152 ~~l~~~--~~~~~~vlD~GcGSGILaIaA~klGa~~v~a~DiDp~Av~~a~eN~~~N~v~~~~~~~~~~~--~~~~~~Dl 227 (294)
T pfam06325 152 EALESL--VKPGETVLDVGCGSGILAIAALKLGAKKVVGVDIDPVAVRAAKENAELNGVEAQLEVYLPGD--LPEGKADV 227 (294)
T ss_pred HHHHHH--CCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCCC--CCCCCCCE
T ss_conf 999865--03698678505650899999997599968999888999999999999769983179964431--55664578
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 0220247752299999999998469998899973387740345653276656557888999999962876212578
Q gi|254780582|r 99 VLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 99 Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
|++.-..+- -......+.+.|+|||++++++.-.. -...+.+.++ .||++.....
T Consensus 228 IvANIla~~---L~~l~~~~~~~l~~~G~lilSGil~~-----------------q~~~v~~a~~-~g~~~~~~~~ 282 (294)
T pfam06325 228 VVANILADP---LIELAPDIYALVKPGGYLILSGILEE-----------------QADDVAEAYS-QGFELITVEE 282 (294)
T ss_pred EEEHHCHHH---HHHHHHHHHHHHCCCCEEEECCCCHH-----------------HHHHHHHHHH-CCCEEEEEEE
T ss_conf 984108999---99999999997389989999178289-----------------9999999998-6997743774
No 61
>KOG1331 consensus
Probab=98.59 E-value=1.3e-07 Score=63.50 Aligned_cols=97 Identities=20% Similarity=0.160 Sum_probs=72.7
Q ss_pred CCCEEEEECCCCCHHHHHHHCCCCEEEEEECHHHHHHHHHCCCC-CEEEECHHHCCCCCCCCCCHHHHHHHHHHC---CH
Q ss_conf 89759996538811135531238748873058999832311686-236533365677547202002202477522---99
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFS-STALVSEGNLPLADSSVDCVLMVHYLEFAE---DP 111 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~---dp 111 (242)
.|.-++|+|||.|-+.... ....++.++-...+.......+. ....+|.-++|+.+++||.++..-+++|.. .-
T Consensus 45 ~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR 122 (293)
T KOG1331 45 TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERR 122 (293)
T ss_pred CCCEEEECCCCCCCCCCCC--CCCEEEECCHHHHHCCCCCCCCCCEEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 7640454246876557679--86315403022322053334798625612444289878760003233544444367789
Q ss_pred HHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 99999999846999889997338
Q gi|254780582|r 112 FLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 112 ~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
..+++|.-|+++|||...+.+..
T Consensus 123 ~~~l~e~~r~lrpgg~~lvyvwa 145 (293)
T KOG1331 123 ERALEELLRVLRPGGNALVYVWA 145 (293)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEH
T ss_conf 99999999872678856899850
No 62
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.58 E-value=3.5e-07 Score=61.02 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=71.2
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHC-----CCC-CEEEECHHHCCCCCCCC
Q ss_conf 999999750104897599965388111355312-38748873058999832311-----686-23653336567754720
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQ-----YFS-STALVSEGNLPLADSSV 96 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~d~~~LPf~~~sf 96 (242)
+..++-+.+...+|.+||+||||+||....+++ ..++++++.....+...... ..+ ....+|..+---+...|
T Consensus 66 ~~A~ml~~L~l~~~~~VLeIGtGsGY~tAlLa~l~~~V~siE~~~~l~~~a~~~l~~~~~~nv~~~~gdg~~g~~~~~pf 145 (213)
T PRK00312 66 MVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVERVFSVERIKTLQWQAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (213)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 99999998436899759996598609999999862928999428999999999999849987699968876678766972
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 200220247752299999999998469998899973387
Q gi|254780582|r 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 97 D~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
|.|++.-..+.+ |..++ .-|++||+|++-+-+.
T Consensus 146 D~Iii~~a~~~~--P~~l~----~qL~~gGrLV~Pig~~ 178 (213)
T PRK00312 146 DRILVTAAAPEI--PRALL----DQLAEGGILVAPIGPG 178 (213)
T ss_pred CEEEEEECCHHH--HHHHH----HHCCCCCEEEEEECCC
T ss_conf 489998434122--59999----8453297999998049
No 63
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3.1e-07 Score=61.35 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=68.5
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCC--CEEEE-EECHHHHHHHHH----CCCCC-EEEECHHHCCCCCCCC
Q ss_conf 9999975010489759996538811135531238--74887-305899983231----16862-3653336567754720
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVE--RTLAF-MPAGQGATNWPD----QYFSS-TALVSEGNLPLADSSV 96 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~--~~~~~-~~~~~~~~~~~~----~~~~~-~~~~d~~~LPf~~~sf 96 (242)
.+.|.+.++...+.+|||+|||.|.+...+.... ..+.+ |.+...+...+. +.... .+..+....+.++ +|
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~-kf 225 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEG-KF 225 (300)
T ss_pred HHHHHHHCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-CC
T ss_conf 89999737755699688707884299999998689872899826699999988769973987637998124466544-00
Q ss_pred CCHHHHHHHHH----HC-CHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 20022024775----22-999999999984699988999733
Q gi|254780582|r 97 DCVLMVHYLEF----AE-DPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 97 D~Vi~~h~LE~----~~-dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
|.|+|.=-++- +. --.++++++.+.|++||.|.|+.=
T Consensus 226 d~IisNPPfh~G~~v~~~~~~~ii~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 226 DLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 689848884677101678899999999976045977999975
No 64
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.56 E-value=1.4e-06 Score=57.67 Aligned_cols=138 Identities=14% Similarity=0.123 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH---CCCCEEEEEECHHHHHHH---HHCCCCC---EEEE
Q ss_conf 889899999999999975010489759996538811135531---238748873058999832---3116862---3653
Q gi|254780582|r 14 SFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG---KVERTLAFMPAGQGATNW---PDQYFSS---TALV 84 (242)
Q Consensus 14 s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~ 84 (242)
++-+....+.++...-..+...+|++++|||||+|-...... ...++++++-.+..+... .+..... .+.+
T Consensus 12 ~~~~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g 91 (187)
T COG2242 12 DEGGPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG 91 (187)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 78999867998998898608899998999578866899999973988559999258889999999999849996799954
Q ss_pred C-HHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 3-365677547202002202477522999999999984699988999733877403456532766565578889999999
Q gi|254780582|r 85 S-EGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLR 163 (242)
Q Consensus 85 d-~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~ 163 (242)
+ ++.|+=.+ ++|.|+.--. .+-..+|+.++..|+|||++++..-+- -+...+.++++
T Consensus 92 ~Ap~~L~~~~-~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~naitl-----------------E~~~~a~~~~~ 149 (187)
T COG2242 92 DAPEALPDLP-SPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANAITL-----------------ETLAKALEALE 149 (187)
T ss_pred CCHHHHCCCC-CCCEEEECCC----CCHHHHHHHHHHHCCCCCEEEEEEECH-----------------HHHHHHHHHHH
T ss_conf 6457636999-9999998798----777899999999718687699986008-----------------88999999999
Q ss_pred HCCC-CCEEEE
Q ss_conf 6287-621257
Q gi|254780582|r 164 EANF-TLSITS 173 (242)
Q Consensus 164 ~~gf-~~~~~~ 173 (242)
+.|+ ++.++.
T Consensus 150 ~~g~~ei~~v~ 160 (187)
T COG2242 150 QLGGREIVQVQ 160 (187)
T ss_pred HCCCCEEEEEE
T ss_conf 72985699998
No 65
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.55 E-value=5.5e-07 Score=59.93 Aligned_cols=105 Identities=10% Similarity=0.122 Sum_probs=70.2
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHH----CC-CC--CEEEECHHHCCCCC
Q ss_conf 99999750104897599965388111355312----3874887305899983231----16-86--23653336567754
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPD----QY-FS--STALVSEGNLPLAD 93 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~----~~-~~--~~~~~d~~~LPf~~ 93 (242)
-.++-+.+...+|.+|||||||+||....++. .+.+++++..+..+..... .. .+ ....+|...---+.
T Consensus 61 ~a~ml~~L~~~~~~~VLeIGtGsGY~tAlla~l~~~~g~V~siE~~~~L~~~A~~~l~~l~~~n~v~v~~gdg~~G~~~~ 140 (205)
T PRK13944 61 VAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf 99999970689999899978985199999999837477179995369999999999998598633067976556577434
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 720200220247752299999999998469998899973387
Q gi|254780582|r 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 94 ~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
..||.|+..-..+.+ |..++ .-|+|||+|++-+-..
T Consensus 141 apfD~Iiv~aa~~~i--P~~l~----~QL~~gGrLV~Pvg~~ 176 (205)
T PRK13944 141 APFDAIIVTAAASTI--PSALV----RQLKDGGVLVIPVEEG 176 (205)
T ss_pred CCCCEEEEEEECCCC--CHHHH----HHCCCCCEEEEEECCC
T ss_conf 980489998507768--99999----8548797999998789
No 66
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.55 E-value=7.8e-07 Score=59.08 Aligned_cols=109 Identities=15% Similarity=0.121 Sum_probs=66.7
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHC---C--CCCEEEECHHHCCCCCCCC
Q ss_conf 9999975010489759996538811135531238---748873058999832311---6--8623653336567754720
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQ---Y--FSSTALVSEGNLPLADSSV 96 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~--~~~~~~~d~~~LPf~~~sf 96 (242)
.+.|-+.++.....+|||+|||.|.+...+.... .....|.+...+...+.. + ....+..|. +.--++.|
T Consensus 185 S~lLL~~l~~~~~g~VLDlGCG~Gvi~~~la~~~p~~~v~l~Dv~a~Al~~ar~nl~~N~l~~~v~~sd~--~~~v~~~f 262 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSAVLAQHSPKIRLTLCDVSAPAVEASRATLAANGLEGEVFASNV--FSEIKGRF 262 (342)
T ss_pred HHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCC--CCCCCCCC
T ss_conf 9999973783248847860678179999999869997699996889999999998998098868997564--45655678
Q ss_pred CCHHHHHHHHH----H-CCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 20022024775----2-2999999999984699988999733877
Q gi|254780582|r 97 DCVLMVHYLEF----A-EDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 97 D~Vi~~h~LE~----~-~dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
|.|+|.=-++- . .=.+.+++++.+.|+|||.|.++. |+.
T Consensus 263 D~IvsNPPFH~G~~~~~~i~~~fi~~A~~~L~~gG~L~iVA-Nr~ 306 (342)
T PRK09489 263 DMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA-NAF 306 (342)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEE-CCC
T ss_conf 98996885215752658999999999998612498899998-189
No 67
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.54 E-value=2.2e-06 Score=56.53 Aligned_cols=162 Identities=15% Similarity=0.099 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH----CCCCEEEEEECHHHHHHHHH---CCC---C-CEEEECH-
Q ss_conf 9999999999975010489759996538811135531----23874887305899983231---168---6-2365333-
Q gi|254780582|r 19 CTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG----KVERTLAFMPAGQGATNWPD---QYF---S-STALVSE- 86 (242)
Q Consensus 19 ~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~---~-~~~~~d~- 86 (242)
...+.++...-..+...+|..++|||||+|......+ ...++++++-..+......+ ... + ..+.+++
T Consensus 23 mTK~EVRa~~l~~L~l~~~~~vwDIGaGsGsvsiEaa~~~~~~~~V~aIE~~~e~~~~~~~N~~kfg~~~nv~~i~G~ap 102 (198)
T PRK00377 23 MTKEEIRALALSKLRLFKGGKLVDVGCGTGSVSVEAALIVGEGGKVYAIDKDELAVELTKKNAEKFGVGDNVVLIEGEAP 102 (198)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCEEHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHH
T ss_conf 66799999999970999989999917703299999999669787599996788899999999998099988599952548
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 65677547202002202477522999999999984699988999733877403456532766565578889999999628
Q gi|254780582|r 87 GNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREAN 166 (242)
Q Consensus 87 ~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~g 166 (242)
+.|+--+..+|.|+.=- ...+-..+|+.+++-|+|||++++..-- + =+..+..++|+++|
T Consensus 103 ~~l~~l~p~pD~vFIGG---~~g~l~~il~~~~~~L~~gGriVinaVt---l--------------et~~~~~~~l~~~~ 162 (198)
T PRK00377 103 EVLPKLNPKSDRYFIGG---GGEELPEIIQAALEKIGKGGRIVADAIL---L--------------ESLNKALSALEELG 162 (198)
T ss_pred HHHHCCCCCCCEEEEEC---CCCCHHHHHHHHHHHCCCCCEEEEEEEC---H--------------HHHHHHHHHHHHCC
T ss_conf 87720899889899978---8777899999999857999899998362---9--------------88999999999769
Q ss_pred CCCEEEEEEEEE-CCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE
Q ss_conf 762125789830-865524676315899999976113214389999997
Q gi|254780582|r 167 FTLSITSRSLFF-PPTHKKCILKLWSVFEKIGNIFGPGFAGIYVIEARK 214 (242)
Q Consensus 167 f~~~~~~~~~~~-pp~~~~~~~~~~~~~e~~~~~~~p~~g~~~~i~a~K 214 (242)
|+.+-.+-.... -+..... .+-+.--+|++.++|
T Consensus 163 ~~~ev~qv~vsr~~~lg~~~--------------~~~~~NPV~ii~~~K 197 (198)
T PRK00377 163 YKYEVTEVIIAKGMKTGKGT--------------AMIARNPIFIITGEK 197 (198)
T ss_pred CCCEEEEEEEEECCCCCCCC--------------EEECCCCEEEEEEEC
T ss_conf 98149999946473257876--------------660689979999978
No 68
>pfam11968 DUF3321 Protein of unknown function (DUF3321). This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.50 E-value=7.8e-07 Score=59.07 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=87.3
Q ss_pred CEEEEECCCCCHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCC---CCCCCCCHHHHHHHHHHCCHHH-
Q ss_conf 759996538811135531238748873058999832311686236533365677---5472020022024775229999-
Q gi|254780582|r 38 CRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPL---ADSSVDCVLMVHYLEFAEDPFL- 113 (242)
Q Consensus 38 ~~vLdiGcg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf---~~~sfD~Vi~~h~LE~~~dp~~- 113 (242)
.++|||||-.............+..+|..++. ......|.-+.|+ +++.||+|.|+-||.|+++|.+
T Consensus 54 lr~LEVGALst~N~~S~~~~~dv~rIDLnSq~---------p~I~qqDFmerPlP~~e~e~F~iISlSLVLNfVP~~~~R 124 (220)
T pfam11968 54 LRALEVGALSTKNACSKSGLFDVTRIDLNSQE---------PGILQQDFMERPLPKDESEKFDIISLSLVLNFVPDPADR 124 (220)
T ss_pred CEEEEECCCCCCCHHCCCCEEEEEEEECCCCC---------CCCHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCHHHH
T ss_conf 31775545564212225674777885258999---------871443244077888831141358887777416987888
Q ss_pred --HHHHHHHHCCCCCE-----EEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf --99999984699988-----99973387740345653276656557888999999962876212578
Q gi|254780582|r 114 --MLHEIWRVLTSGGR-----MIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 114 --~L~Ei~RvLkPgG~-----lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
.|+.+..-|+|+|. ++++.|-| + .-+.|+++..++.+.+..+||.....+.
T Consensus 125 GeML~r~~~fL~~~~~~~~~~lFlVLPlp-C---------v~NSRY~~~~~l~~im~slGf~~~~~k~ 182 (220)
T pfam11968 125 GEMLKRTTKFLRPPGPGSPPSLFLVLPLP-C---------VTNSRYMDEERLQAIMSSLGFVLVKSKE 182 (220)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEEEEEHH-H---------HHCCCCCCHHHHHHHHHHCCCEEEEEEC
T ss_conf 69999999971799766663268873245-6---------4044001999999999967955887642
No 69
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.48 E-value=8e-07 Score=59.01 Aligned_cols=127 Identities=16% Similarity=0.150 Sum_probs=83.5
Q ss_pred CCCCCCEEEEECCCCCHHHHHH-HCCC-CEEEEEECHHHHHHHHHCC---------CCCEEEECHHHC--CCCCCCCCCH
Q ss_conf 1048975999653881113553-1238-7488730589998323116---------862365333656--7754720200
Q gi|254780582|r 33 DDVTGCRLLGLGYAIPFFSCFH-GKVE-RTLAFMPAGQGATNWPDQY---------FSSTALVSEGNL--PLADSSVDCV 99 (242)
Q Consensus 33 ~~~~g~~vLdiGcg~g~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~d~~~L--Pf~~~sfD~V 99 (242)
....|.+|||.=.|.||.+... .+.. +++++.-+++ ++..+..+ ....+.+|..++ -|+|+|||+|
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~-VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI 209 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPN-VLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI 209 (287)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEEECCC-EEEEECCCCCCCCCCCCCCEEECCCHHHHHHCCCCCCCCEE
T ss_conf 43668784432467138999998758748999960877-27741358898420200317861659999741886530168
Q ss_pred H-----HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 2-----202477522999999999984699988999733877403456532766565578889999999628762125
Q gi|254780582|r 100 L-----MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSIT 172 (242)
Q Consensus 100 i-----~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~ 172 (242)
+ ++++=|. -...+-+|+.|||+|||+|+=-+-||.+..- +. =-++.+.+.|+..||++...
T Consensus 210 iHDPPRfS~AgeL--YseefY~El~RiLkrgGrlFHYvG~Pg~ryr---------G~-d~~~gVa~RLr~vGF~~v~~ 275 (287)
T COG2521 210 IHDPPRFSLAGEL--YSEEFYRELYRILKRGGRLFHYVGNPGKRYR---------GL-DLPKGVAERLRRVGFEVVKK 275 (287)
T ss_pred EECCCCCCHHHHH--HHHHHHHHHHHHCCCCCCEEEEECCCCCCCC---------CC-CHHHHHHHHHHHCCCEEEEE
T ss_conf 6079733102357--6899999999970769807997279874024---------67-71478999998617344432
No 70
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.41 E-value=1.9e-06 Score=56.90 Aligned_cols=128 Identities=17% Similarity=0.196 Sum_probs=87.4
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHH----CCCCEEEEEECHHHHHHHHHCCC-------CCEEEECHHHCCCCCC
Q ss_conf 999975010489759996538811135531----23874887305899983231168-------6236533365677547
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHG----KVERTLAFMPAGQGATNWPDQYF-------SSTALVSEGNLPLADS 94 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~~LPf~~~ 94 (242)
.+|...+.-.+|.+|+|.|.|+|.+...++ ..+++++.+-..+.+..+.++.. ......|..+.-+++
T Consensus 84 ~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~- 162 (256)
T COG2519 84 GYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE- 162 (256)
T ss_pred HHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC-
T ss_conf 9999870999887899815680599999999648884599999527899999999998424561378705400024655-
Q ss_pred CCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 20200220247752299999999998469998899973387740345653276656557888999999962876212578
Q gi|254780582|r 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 95 sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
.||.|++= ++||-.+|+.++.+|+|||.+++-+|+--.. .+..+-|++.||.-.+...
T Consensus 163 ~vDav~LD-----mp~PW~~le~~~~~Lkpgg~~~~y~P~veQv-----------------~kt~~~l~~~g~~~ie~~E 220 (256)
T COG2519 163 DVDAVFLD-----LPDPWNVLEHVSDALKPGGVVVVYSPTVEQV-----------------EKTVEALRERGFVDIEAVE 220 (256)
T ss_pred CCCEEEEC-----CCCHHHHHHHHHHHHCCCCEEEEECCCHHHH-----------------HHHHHHHHHCCCCCHHHHE
T ss_conf 46779975-----8984899999998717996799983978999-----------------9999999866951502320
Q ss_pred EE
Q ss_conf 98
Q gi|254780582|r 175 SL 176 (242)
Q Consensus 175 ~~ 176 (242)
.+
T Consensus 221 ~l 222 (256)
T COG2519 221 TL 222 (256)
T ss_pred EE
T ss_conf 31
No 71
>KOG1975 consensus
Probab=98.38 E-value=5.9e-07 Score=59.75 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=74.4
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCH-HHHHH-HCCCCEEEEEECHHHHHHHHH---CC---------CCCEEEEC---
Q ss_conf 999999975010489759996538811-13553-123874887305899983231---16---------86236533---
Q gi|254780582|r 23 AISKVLSTTWDDVTGCRLLGLGYAIPF-FSCFH-GKVERTLAFMPAGQGATNWPD---QY---------FSSTALVS--- 85 (242)
Q Consensus 23 ~~~~~l~~~l~~~~g~~vLdiGcg~g~-~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~d--- 85 (242)
++...|-+.. ..++..++++|||-|. +.... +.....+++|.+.-.+..... .+ ....+.+|
T Consensus 105 wIKs~LI~~y-~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975 105 WIKSVLINLY-TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred HHHHHHHHHH-HCCCCCCCEECCCCCCCHHHHHHHCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH
T ss_conf 8999999998-612230000056776207676551456357653434009999999999986664136516999714416
Q ss_pred ---HHHCCCCCCCCCCHHHHHHHHHH----CCHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf ---36567754720200220247752----299999999998469998899973387740
Q gi|254780582|r 86 ---EGNLPLADSSVDCVLMVHYLEFA----EDPFLMLHEIWRVLTSGGRMIVVVPNKRGM 138 (242)
Q Consensus 86 ---~~~LPf~~~sfD~Vi~~h~LE~~----~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~ 138 (242)
.+-+++.+-+||+|-|..+++++ +...-+|+.+.+.|+|||.+|-++||..-.
T Consensus 184 ~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiPdsd~I 243 (389)
T KOG1975 184 ERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIPDSDVI 243 (389)
T ss_pred HHHHHHCCCCCCCCCEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 689874257898855565545675431338889999998996358885799846968999
No 72
>pfam00891 Methyltransf_2 O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.
Probab=98.33 E-value=8.1e-06 Score=53.28 Aligned_cols=127 Identities=14% Similarity=0.072 Sum_probs=73.0
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCCC-C-EEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 10489759996538811135531238-7-488730589998323116862365333656775472020022024775229
Q gi|254780582|r 33 DDVTGCRLLGLGYAIPFFSCFHGKVE-R-TLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAED 110 (242)
Q Consensus 33 ~~~~g~~vLdiGcg~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~d 110 (242)
+-....+++|||.|.|.+...+.+.. + ...+.+-+.-+...........+.+|.- -|++. -|++++.|+|+.-+|
T Consensus 98 d~~~~~~vvDvGGG~G~~~~~i~~~~P~l~~~v~Dlp~v~~~a~~~~rv~~~~gdff-~~~P~--aD~y~l~~vLH~w~d 174 (239)
T pfam00891 98 DFSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLPHVIADAPSADRVEFVGGDFF-ESVPE--ADAILLKWVLHDWSD 174 (239)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECHHHHHHCCCCCCEEEECCCCC-CCCCC--CCEEEEEHHHCCCCH
T ss_conf 766787689967981899999999889983898646877862764685488448777-78888--517764014315999
Q ss_pred H--HHHHHHHHHHCCCCCEEEEEEC---CCCC----CHH-HHHHC--CCCCCCCCCHHHHHHHH
Q ss_conf 9--9999999984699988999733---8774----034-56532--76656557888999999
Q gi|254780582|r 111 P--FLMLHEIWRVLTSGGRMIVVVP---NKRG----MWA-RMEHT--PFGSGQPYSWYQMISLL 162 (242)
Q Consensus 111 p--~~~L~Ei~RvLkPgG~lii~~~---n~~s----~w~-~~~~~--~~~~~r~~~~~~l~~~l 162 (242)
. .++|+.+.+.|+|||+++|.-. +..+ .++ ..+-. ..-.++-.+..+.+++|
T Consensus 175 ~~~~~iL~~~~~al~~~grllI~e~v~~~~~~~~~~~~~~~~Dl~Ml~~~~G~eRt~~e~~~Ll 238 (239)
T pfam00891 175 EDCVKILKRCYEALPPGGKVIVVEMVLPEDPDDDLETEVLLLDLNMLVLNGGKERTEKEWRKLL 238 (239)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
T ss_conf 9999999999997799988999974457999872666799998998552897187999999871
No 73
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.30 E-value=6.5e-06 Score=53.82 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=86.6
Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHCCC-------CCEEEECHHHC--CCCCC
Q ss_conf 9997501048975999653881113553123---874887305899983231168-------62365333656--77547
Q gi|254780582|r 27 VLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQYF-------SSTALVSEGNL--PLADS 94 (242)
Q Consensus 27 ~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~~L--Pf~~~ 94 (242)
.|..+.+.....+|||+|||.|....+++.. ....+++....++..+.+.-. ...+.+|..++ +...+
T Consensus 35 LL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~ 114 (248)
T COG4123 35 LLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFA 114 (248)
T ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHCCCHHHEEEEHHHHHHHHHCCCCC
T ss_conf 99765265668769883689468999974558778079998179999999998861861340167643088765423656
Q ss_pred CCCCHHHHH------------------HHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHH
Q ss_conf 202002202------------------47752299999999998469998899973387740345653276656557888
Q gi|254780582|r 95 SVDCVLMVH------------------YLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWY 156 (242)
Q Consensus 95 sfD~Vi~~h------------------~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~ 156 (242)
+||.|+|.= --|-.-+-+++++-+.++|||||++.++-+- -+-.
T Consensus 115 ~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~------------------erl~ 176 (248)
T COG4123 115 SFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP------------------ERLA 176 (248)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEEECH------------------HHHH
T ss_conf 5478995989878753348674665566322288999999999974679789999558------------------8889
Q ss_pred HHHHHHHHCCCCCEEEEEE
Q ss_conf 9999999628762125789
Q gi|254780582|r 157 QMISLLREANFTLSITSRS 175 (242)
Q Consensus 157 ~l~~~l~~~gf~~~~~~~~ 175 (242)
++.+.|+..+|++......
T Consensus 177 ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 177 EIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred HHHHHHHHCCCCCEEEEEE
T ss_conf 9999998669871589986
No 74
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.28 E-value=5.6e-06 Score=54.16 Aligned_cols=128 Identities=18% Similarity=0.040 Sum_probs=87.2
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHH-HCCCCEEEEEECHHHHHHHHHCCC------CCEEEE-CHHHCCCCCCC
Q ss_conf 9999997501048975999653881113553-123874887305899983231168------623653-33656775472
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH-GKVERTLAFMPAGQGATNWPDQYF------SSTALV-SEGNLPLADSS 95 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-d~~~LPf~~~s 95 (242)
+.+.+..+-.-..|..+||==||||-+.... --+.++++.|.+..++.-...+.. .....+ |..++||++++
T Consensus 185 lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~ 264 (347)
T COG1041 185 LARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNS 264 (347)
T ss_pred HHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC
T ss_conf 99998777416469876457678348888366427567603237999855664156627676168873022127788774
Q ss_pred CCCHHHH---------HHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 0200220---------2477522999999999984699988999733877403456532766565578889999999628
Q gi|254780582|r 96 VDCVLMV---------HYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREAN 166 (242)
Q Consensus 96 fD~Vi~~---------h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~g 166 (242)
||.|++= ......+=-.++|+++.+||++||++++..| ..-.+++..++
T Consensus 265 vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p----------------------~~~~~~~~~~~ 322 (347)
T COG1041 265 VDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP----------------------RDPRHELEELG 322 (347)
T ss_pred CCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC----------------------CCCHHHHHHCC
T ss_conf 23588469987100245552899999999999987304848999617----------------------86055676439
Q ss_pred CCCEEEE
Q ss_conf 7621257
Q gi|254780582|r 167 FTLSITS 173 (242)
Q Consensus 167 f~~~~~~ 173 (242)
|+++..-
T Consensus 323 f~v~~~~ 329 (347)
T COG1041 323 FKVLGRF 329 (347)
T ss_pred CEEEEEE
T ss_conf 6599999
No 75
>TIGR00406 prmA ribosomal protein L11 methyltransferase; InterPro: IPR004498 Ribosomal protein L11 methyltransferase (2.1.1 from EC) is required for the methylation of ribosomal protein L11. It forms a bifunctional operon in Escherichia coli with panF (pantothenate transport).; GO: 0008276 protein methyltransferase activity, 0006479 protein amino acid methylation.
Probab=98.27 E-value=1e-06 Score=58.42 Aligned_cols=120 Identities=10% Similarity=0.038 Sum_probs=86.2
Q ss_pred CCCC--CEEEEECCCCCHHHHHH--HCCCCEEEEEECHHHHHHHHHCCCCCEEE---------ECHHHCCCCCCCCCCHH
Q ss_conf 0489--75999653881113553--12387488730589998323116862365---------33365677547202002
Q gi|254780582|r 34 DVTG--CRLLGLGYAIPFFSCFH--GKVERTLAFMPAGQGATNWPDQYFSSTAL---------VSEGNLPLADSSVDCVL 100 (242)
Q Consensus 34 ~~~g--~~vLdiGcg~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d~~~LPf~~~sfD~Vi 100 (242)
..++ +.++|+|||+|.++..+ -.+...+++|.++..+...+.+...+.+. +-++...-.+..+|+||
T Consensus 192 d~k~kh~~viD~GCGSGIL~IAa~~LGa~~~~g~D~DP~Ave~~r~N~~lN~v~~~~~~~~~~~vPe~~~~~e~~~DViV 271 (330)
T TIGR00406 192 DLKDKHKKVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLENSVPELEQPIEGKADVIV 271 (330)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCEEE
T ss_conf 47776654787126717899999975123112213772899999976874588645764320578753453225667578
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 2024775229999999999846999889997338774034565327665655788899999996287621257
Q gi|254780582|r 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 101 ~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
+.=+=|- -..+.-++.|.++++|.++++|-=- --...+.+.+.+.||++..+.
T Consensus 272 ANiLA~v---i~~L~p~~~~L~~~~G~lilSGIl~-----------------~~~~sV~~ay~q~GF~~~~~~ 324 (330)
T TIGR00406 272 ANILAEV---IKELYPQFSRLVKPGGHLILSGILE-----------------TQAQSVCEAYEQAGFTVVEIL 324 (330)
T ss_pred ECCHHHH---HHHHHHHHHHHCCCCCCEEEHHHHH-----------------HHHHHHHHHHHCCCCEEHHHH
T ss_conf 8002457---8764135513106899657413476-----------------479999999855794634346
No 76
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.27 E-value=6.5e-06 Score=53.82 Aligned_cols=114 Identities=14% Similarity=0.047 Sum_probs=70.3
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHHCCC-----C--CEEEECHHHCCC
Q ss_conf 99999999750104897599965388111355312---3874887305899983231168-----6--236533365677
Q gi|254780582|r 22 DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPDQYF-----S--STALVSEGNLPL 91 (242)
Q Consensus 22 ~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~d~~~LPf 91 (242)
.++...+..+++.....+|||+|||+|-....+.. ...+++.|.+...+...+.+.. . ..+.+|.- -++
T Consensus 119 ELi~~~l~~~~~~~~~~rilDlGtGSG~Iaisla~~~p~~~v~a~Dis~~AL~vA~~N~~~~~l~~rv~~~~~D~~-~~l 197 (307)
T PRK11805 119 ELIEDGFAPWLEDEQPTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLF-AAL 197 (307)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHH-HCC
T ss_conf 9999999997335788727774278279999999878998899985899999999999998388773899804022-126
Q ss_pred CCCCCCCHHHH------HHHH-----HHCCH--------------HHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 54720200220------2477-----52299--------------9999999984699988999733877
Q gi|254780582|r 92 ADSSVDCVLMV------HYLE-----FAEDP--------------FLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 92 ~~~sfD~Vi~~------h~LE-----~~~dp--------------~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
+++.||+|++. ..++ .-.+| ..+++++.+.|+|||.|++-+-|-.
T Consensus 198 ~~~~fDlIvSNPPYI~~~~~~~L~~ev~~EP~~AL~gG~DGLd~~r~i~~~A~~~L~pgG~L~~EiG~~q 267 (307)
T PRK11805 198 PGRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAADYLTEDGVLVCEVGNSM 267 (307)
T ss_pred CCCCCCEEEECCCCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCH
T ss_conf 8875077996799788565633977531587888768924889999999988974476968999979788
No 77
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.25 E-value=9.7e-06 Score=52.81 Aligned_cols=163 Identities=13% Similarity=0.140 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHH---CCCC---CEEEECH-HH
Q ss_conf 99999999999750104897599965388111355312---3874887305899983231---1686---2365333-65
Q gi|254780582|r 19 CTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPD---QYFS---STALVSE-GN 88 (242)
Q Consensus 19 ~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~d~-~~ 88 (242)
...+.++...-..+...+|..++|+|||+|-.....+. ...+++++-..+......+ .... ..+.+++ +.
T Consensus 23 mTK~EVRa~~l~kL~l~~~~~vwDIGaGtGsVsiEaa~~~~~g~V~AIE~~~~a~~li~~N~~rfgv~nv~ii~g~ape~ 102 (196)
T PRK07402 23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAALLCPKGRVIAIERDEEVANLIRRNCDRFGVKNVEVIEGSAPEC 102 (196)
T ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCHHH
T ss_conf 78899999999970899999999947887799999998789988999976888999999989972999879997263666
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 67754720200220247752299999999998469998899973387740345653276656557888999999962876
Q gi|254780582|r 89 LPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFT 168 (242)
Q Consensus 89 LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~ 168 (242)
|+--....|.|+.-. ..+-..+|+.++..|+|||++++..-- + -+..++.+.|++.++.
T Consensus 103 L~~l~p~pD~vFIGG----g~~l~~il~~~~~~L~pgGriVinait---L--------------etl~~~~~~l~~~~~~ 161 (196)
T PRK07402 103 LAQLAPAPDRICIEG----GRPIKEILQAVWQYLKPGGRLVATASS---L--------------EGLYAISEGLAQLQAR 161 (196)
T ss_pred HHHCCCCCCEEEECC----CCCHHHHHHHHHHHCCCCCEEEEEEEE---H--------------HHHHHHHHHHHHCCCC
T ss_conf 840899999999848----968899999999867999899998570---9--------------8899999999973887
Q ss_pred CEEEEEEEEECCCCCHHHHHHHHHHHHHHH-HHHHHCCEEEEEEEEEE
Q ss_conf 212578983086552467631589999997-61132143899999975
Q gi|254780582|r 169 LSITSRSLFFPPTHKKCILKLWSVFEKIGN-IFGPGFAGIYVIEARKI 215 (242)
Q Consensus 169 ~~~~~~~~~~pp~~~~~~~~~~~~~e~~~~-~~~p~~g~~~~i~a~K~ 215 (242)
-.+.....- +..+.+++ ..+-+.--+|++.|+|.
T Consensus 162 ~~e~~qv~v-------------sr~~~lg~~~~~~a~NPVfIi~a~K~ 196 (196)
T PRK07402 162 NVEVVQAAV-------------NRLETRGRSQVFAAVDPIFILSGEKL 196 (196)
T ss_pred CEEEEEEEH-------------HHCCCCCCCCEEECCCCEEEEEEEEC
T ss_conf 637999975-------------20323357855646899799999979
No 78
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.24 E-value=7.8e-06 Score=53.37 Aligned_cols=103 Identities=13% Similarity=0.027 Sum_probs=66.7
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC----CCEEEEEECHHHHHHHHH-----CCCCC-EEEECHHHCCCCC
Q ss_conf 9999997501048975999653881113553123----874887305899983231-----16862-3653336567754
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV----ERTLAFMPAGQGATNWPD-----QYFSS-TALVSEGNLPLAD 93 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~d~~~LPf~~ 93 (242)
+...+.+.+...+|.+|||||+|+||....++.. +.+++++....-+..+.. ...+. .+.+|...===+.
T Consensus 63 iVA~MlElL~l~pg~rVLEIGTGSGYqAAlLA~Lvg~~G~V~TIE~~~~L~~~Ar~~L~~lG~~NV~vv~GDG~~G~pe~ 142 (317)
T PRK13943 63 LMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEF 142 (317)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 99999997178999868996577438999999984878759999867999999999999779986499979988888667
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 720200220247752299999999998469998899973
Q gi|254780582|r 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 94 ~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
..||.|+..-.-+.++ ... ..=|+|||++++=+
T Consensus 143 APYD~IIVTAaa~~IP--~aL----ldQLk~GGRLViPv 175 (317)
T PRK13943 143 SPYDVIFVTVGVDEVP--ETW----FTQLKEGGRVIVPI 175 (317)
T ss_pred CCCCEEEEEECCCCCC--HHH----HHHCCCCCEEEEEE
T ss_conf 9977899985276489--999----99618596999984
No 79
>KOG2352 consensus
Probab=98.22 E-value=9.2e-06 Score=52.94 Aligned_cols=96 Identities=21% Similarity=0.156 Sum_probs=66.4
Q ss_pred CEEEEECCCCCHHHHHH-HCCCCEE-EEEECHHHHHHHHHCC-----CCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 75999653881113553-1238748-8730589998323116-----862365333656775472020022024775229
Q gi|254780582|r 38 CRLLGLGYAIPFFSCFH-GKVERTL-AFMPAGQGATNWPDQY-----FSSTALVSEGNLPLADSSVDCVLMVHYLEFAED 110 (242)
Q Consensus 38 ~~vLdiGcg~g~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~d 110 (242)
.++|.+|||.-.+...+ ....+.+ ..+.++..+......+ .......|...+.|+|+|||+|+.-.+|++...
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred CEEEEECCCCCHHHHHHHHCCCCCCEECCCCHHHHHHHHHCCCCCCCCEEEEEECCHHCCCCCCCEEEEEECCCCCCCCC
T ss_conf 11476158877999999865877742200568999998751456774248898021103578753148873276400147
Q ss_pred H----------HHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9----------9999999984699988999733
Q gi|254780582|r 111 P----------FLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 111 p----------~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
+ ...+.|+.|||+|||+.+.+..
T Consensus 130 de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352 130 DEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEE
T ss_conf 850023467766777667887426987899986
No 80
>pfam07942 N2227 N2227-like protein. This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions.
Probab=98.20 E-value=1.3e-05 Score=52.06 Aligned_cols=167 Identities=16% Similarity=0.073 Sum_probs=100.7
Q ss_pred HHHHHHHC--CHHHHHHHH----HHHHHHHHHCCCC----CCCEEEEECCCCCHHHHHHHCCC-CEEEEEECHHHHHHHH
Q ss_conf 89999612--889899999----9999999750104----89759996538811135531238-7488730589998323
Q gi|254780582|r 6 VELRQFYS--SFLGKCTTD----AISKVLSTTWDDV----TGCRLLGLGYAIPFFSCFHGKVE-RTLAFMPAGQGATNWP 74 (242)
Q Consensus 6 ~~l~~wY~--s~~G~~~~~----~~~~~l~~~l~~~----~g~~vLdiGcg~g~~~~~~~~~~-~~~~~~~~~~~~~~~~ 74 (242)
..|.++++ |..|+.-++ -+.+.|.++.+.. ..-+||-=|||.|-+.-.++..+ .+-+-+-+.-|+....
T Consensus 17 stL~q~~RDWS~eG~~ER~~~~~pI~~~L~~~~p~~~~~~~~~~VLVPGaGLGRLa~Eia~~G~~~~gNE~S~~Mllas~ 96 (268)
T pfam07942 17 STLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSRSHDRSKIRILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSN 96 (268)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHH
T ss_conf 99987764064330899998899999999986798756777828997698803789998725646887212199999999
Q ss_pred ------H---------------------------------------CCCC-CEEEECHHHC-CCCCCCCCCHHHHHHHHH
Q ss_conf ------1---------------------------------------1686-2365333656-775472020022024775
Q gi|254780582|r 75 ------D---------------------------------------QYFS-STALVSEGNL-PLADSSVDCVLMVHYLEF 107 (242)
Q Consensus 75 ------~---------------------------------------~~~~-~~~~~d~~~L-Pf~~~sfD~Vi~~h~LE~ 107 (242)
. .... ....+|..++ +-..++||+|+...-++-
T Consensus 97 fiLn~~~~~~~~~i~Pfi~~~Sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~d~VvT~FFIDT 176 (268)
T pfam07942 97 FILNYCKEENQITIYPFIHSFSNQLTRDDQLRPVQIPDVHPLSELGPRGNFSMCAGDFLEVYGEDANSYDVVVTCFFIDT 176 (268)
T ss_pred HHHHCCCCCCCEEEECCCCCCCCCCCHHHCEEEEECCCCCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEC
T ss_conf 99852587782899632536668789889755576588681014799984148700358983888782268999987664
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEE
Q ss_conf 229999999999846999889997338774034565327665655788899999996287621257898
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSL 176 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~~~ 176 (242)
..|-..-|+.|+++|||||..|-.+|--+ +..+. +-...--+|..++....+..||+++..+...
T Consensus 177 A~Ni~~Yi~tI~~lLkpgG~WIN~GPLly---h~~~~-~~~~siELs~eEi~~l~~~~GF~~~~~~~~i 241 (268)
T pfam07942 177 AHNVLEYIDTIEKILKPGGHWINLGPLLY---HFEPL-PDEMSIELSLEDIKRLATKRGFKDEKEETGI 241 (268)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCCCCC---CCCCC-CCCCCEECCHHHHHHHHHHCCCEEEEEEEEC
T ss_conf 68899999999998366988996467012---45777-8876000689999999985697799888302
No 81
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.6e-05 Score=51.64 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=68.8
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC-CCEEEEEECHHHHHHHHH-----CCC-CCEEEECHHHCCCC-CCC
Q ss_conf 9999997501048975999653881113553123-874887305899983231-----168-62365333656775-472
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV-ERTLAFMPAGQGATNWPD-----QYF-SSTALVSEGNLPLA-DSS 95 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~d~~~LPf~-~~s 95 (242)
.-.++-+.+...+|.+|||||||+||....+++. .++++++-...-+..+++ ... ....++|.. .=++ ...
T Consensus 60 ~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~-~G~~~~aP 138 (209)
T COG2518 60 MVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGS-KGWPEEAP 138 (209)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCCC
T ss_conf 99999997489999868887778309999999974849999971999999999999769873499978855-68877798
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 02002202477522999999999984699988999733
Q gi|254780582|r 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 96 fD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
||.|++.-.-+.++ ..++ +-|+|||++++-+-
T Consensus 139 yD~I~Vtaaa~~vP--~~Ll----~QL~~gGrlv~PvG 170 (209)
T COG2518 139 YDRIIVTAAAPEVP--EALL----DQLKPGGRLVIPVG 170 (209)
T ss_pred CCEEEEEECCCCCC--HHHH----HHCCCCCEEEEEEC
T ss_conf 47899950357799--8999----85065988999985
No 82
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; InterPro: IPR014008 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiT subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=98.17 E-value=2.1e-05 Score=50.95 Aligned_cols=109 Identities=14% Similarity=0.051 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHCCCCCCC-EEEEECCCCCHHHHHHHC---C-CCEEEEEECHHHHHH---HHHCC-CCC---EEEECHH-
Q ss_conf 999999999750104897-599965388111355312---3-874887305899983---23116-862---3653336-
Q gi|254780582|r 21 TDAISKVLSTTWDDVTGC-RLLGLGYAIPFFSCFHGK---V-ERTLAFMPAGQGATN---WPDQY-FSS---TALVSEG- 87 (242)
Q Consensus 21 ~~~~~~~l~~~l~~~~g~-~vLdiGcg~g~~~~~~~~---~-~~~~~~~~~~~~~~~---~~~~~-~~~---~~~~d~~- 87 (242)
++.++...-..+...+|. +++|||||+|...-+.++ . ..+++++-..+.... ..+.. ... .+.+|..
T Consensus 4 K~EvR~l~L~~L~l~~~~~v~wDIGaGtGS~~iE~~~~~p~~g~v~aiEr~~~~~~~~~~N~~~~c~~~~~~i~~g~ap~ 83 (135)
T TIGR02469 4 KREVRALTLAKLRLRPGDSVLWDIGAGTGSVTIEAARLVPNSGRVYAIERNPEALRLIERNLRRFCGVSNIVIVEGDAPE 83 (135)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 78899999987178999946889605748389999973598607999853768987999999982899963256355684
Q ss_pred -----HCCCC---CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf -----56775---4720200220247752299999999998469998899973
Q gi|254780582|r 88 -----NLPLA---DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 88 -----~LPf~---~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
..|-. ..-+|.|+.--.=. .-+..|+++++.|+|||++++..
T Consensus 84 ~~~~~~~~~~~~~~~~~Da~fvGGs~~---~~~~il~~~~~~l~~GGr~v~na 133 (135)
T TIGR02469 84 ELLNSDAPEDSAKLPEPDAVFVGGSGG---KLEEILEAVERRLRPGGRIVLNA 133 (135)
T ss_pred CCCCCCCCHHHCCCCCCCEEEECCCCH---HHHHHHHHHHHCCCCCCEEEEEE
T ss_conf 333677771005887468888838971---78999999985059688888851
No 83
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.16 E-value=8.6e-06 Score=53.12 Aligned_cols=158 Identities=12% Similarity=0.078 Sum_probs=92.5
Q ss_pred HHHCCHHHHHHHHH----HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC-CCEEEEEECHHHHHHHHH-----CCCC
Q ss_conf 96128898999999----9999997501048975999653881113553123-874887305899983231-----1686
Q gi|254780582|r 10 QFYSSFLGKCTTDA----ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV-ERTLAFMPAGQGATNWPD-----QYFS 79 (242)
Q Consensus 10 ~wY~s~~G~~~~~~----~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~ 79 (242)
+||.+|.-.+..+- .-+.+....+.....++||+|||.|-.+.+++.. ..+.+.|.+...+..... ....
T Consensus 92 ~FyC~pedYf~KKY~lt~tHSev~~a~~~i~pgkaLDLGCG~GRNsLyLa~~GfdVTA~D~N~~sl~~L~~ia~~E~L~i 171 (289)
T PRK12335 92 SFYCKPEDYFHKKYNLTPTHSEVLEAAKTVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQASLENLQQIAEKENLNI 171 (289)
T ss_pred EEECCHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 88617888778633899861999998752688746660478882278897579842588689999999999999719887
Q ss_pred CEEEECHHHCCCCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHH
Q ss_conf 236533365677547202002202477522--999999999984699988999733877403456532766565578889
Q gi|254780582|r 80 STALVSEGNLPLADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQ 157 (242)
Q Consensus 80 ~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~ 157 (242)
.....|..+..+++ .+|.|++.-||-|.+ .-..++.++.....|||+=+|+..=----...- .|| .-.|..++
T Consensus 172 ~~~~yDIN~a~l~~-~YDfI~STVV~mFL~~~~ip~iI~nMQ~~T~~gGyNlIV~am~T~d~pc~--~pF--~ftfk~gE 246 (289)
T PRK12335 172 RAGSYDINSASLQE-EYDFILSTVVLMFLNPERIPDIIKNMQEHTNPGGYNLIVCAMDTEDYPCP--MPF--PFTFKEGE 246 (289)
T ss_pred CCEEECCCCCCCCC-CCCEEEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCC--CCC--CCCCCCHH
T ss_conf 72575166666677-76789996788642877869999999984479986899987147778899--886--62567206
Q ss_pred HHHHHHHCCCCCEEEEE
Q ss_conf 99999962876212578
Q gi|254780582|r 158 MISLLREANFTLSITSR 174 (242)
Q Consensus 158 l~~~l~~~gf~~~~~~~ 174 (242)
|++--+ ++++.....
T Consensus 247 L~~YY~--dWeiikYnE 261 (289)
T PRK12335 247 LKDYYQ--DWEILKYNE 261 (289)
T ss_pred HHHHHC--CCEEEEECC
T ss_conf 888747--877998326
No 84
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.13 E-value=2.6e-05 Score=50.36 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=68.4
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHHCCC-----C--CEEEECHHHCCCC
Q ss_conf 9999999750104897599965388111355312---3874887305899983231168-----6--2365333656775
Q gi|254780582|r 23 AISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPDQYF-----S--STALVSEGNLPLA 92 (242)
Q Consensus 23 ~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~--~~~~~d~~~LPf~ 92 (242)
++...+..+.......+|||+|||+|-....+.. ...+++.|.+...+.....+.. . ..+.+|.- -+++
T Consensus 108 Lv~~~l~~~~~~~~~~~iLDlGtGSG~Iai~la~~~p~~~v~a~DiS~~Al~~A~~N~~~~~l~~rv~~~~~D~~-~~~~ 186 (284)
T TIGR03533 108 LIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLF-AALP 186 (284)
T ss_pred HHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHH-HHCC
T ss_conf 999999998423677715552168079999999878998799998999999999999986085433688835143-3145
Q ss_pred CCCCCCHHHH------HHHHH-----HCCHH--------------HHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 4720200220------24775-----22999--------------99999998469998899973387
Q gi|254780582|r 93 DSSVDCVLMV------HYLEF-----AEDPF--------------LMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 93 ~~sfD~Vi~~------h~LE~-----~~dp~--------------~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
+..||+||+. .-++. -.+|+ .+++++.+.|+|||.+++-+-+-
T Consensus 187 ~~~fDlIVSNPPYI~~~e~~~l~~ev~~EP~~AL~gG~dGL~~yr~Ii~~a~~~L~pgG~l~lEiG~~ 254 (284)
T TIGR03533 187 GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNS 254 (284)
T ss_pred CCCCCEEEECCCCCCHHHHHHCCHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 77778799779978846554497641158699875895587999999998898425697899997978
No 85
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.13 E-value=2.4e-05 Score=50.62 Aligned_cols=169 Identities=11% Similarity=0.036 Sum_probs=101.0
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH---CCCCEEEEEECHHHHHHHHH---CCCCC--E
Q ss_conf 9612889899999999999975010489759996538811135531---23874887305899983231---16862--3
Q gi|254780582|r 10 QFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG---KVERTLAFMPAGQGATNWPD---QYFSS--T 81 (242)
Q Consensus 10 ~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~--~ 81 (242)
.|.+. -+....+.++...-..+...+|..+.|||||+|......+ ....+++++..+.......+ ..... .
T Consensus 5 ~F~r~-~~pmTK~EIRai~LskL~l~~~~vvwDIGaGsGsvsiEaa~~~p~~~V~AvE~~~~~~~~i~~N~~~fg~~nv~ 83 (186)
T PRK08287 5 LFLRG-KVPMTKEEVRALSLSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPAALRLIKENRQRFGCGNID 83 (186)
T ss_pred HHCCC-CCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEE
T ss_conf 62349-99977899999999971999999999957887789999999789988999937989999999989972999879
Q ss_pred -EEEC-HHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHH
Q ss_conf -6533-36567754720200220247752299999999998469998899973387740345653276656557888999
Q gi|254780582|r 82 -ALVS-EGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMI 159 (242)
Q Consensus 82 -~~~d-~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~ 159 (242)
+.++ ++. +. +.+|.|+.=- .-.+-..+|+.++..|+|||++++..-- + =+..+..
T Consensus 84 ~i~g~Ap~~--l~-~~pD~vFIGG---sgg~l~~il~~~~~~L~~gGriVinavt---l--------------et~~~a~ 140 (186)
T PRK08287 84 IIPGEAPIT--LT-GKADAIFMGG---SGGHLTAIIDWALGHLHPGGRLVLNFIL---Q--------------ENLHSAL 140 (186)
T ss_pred EEECCCCHH--CC-CCCCEEEEEC---CCCCHHHHHHHHHHHCCCCCEEEEEEEE---H--------------HHHHHHH
T ss_conf 993778110--35-7898499974---7898899999999757999899998260---8--------------7799999
Q ss_pred HHHHHCCCC-CEEEEEE-EEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEE
Q ss_conf 999962876-2125789-83086552467631589999997611321438999999751
Q gi|254780582|r 160 SLLREANFT-LSITSRS-LFFPPTHKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKIL 216 (242)
Q Consensus 160 ~~l~~~gf~-~~~~~~~-~~~pp~~~~~~~~~~~~~e~~~~~~~p~~g~~~~i~a~K~~ 216 (242)
+++++.||. ++-.+-. ...-|..... .+-+.--+|++.|+|..
T Consensus 141 ~~~~~~~~~~~e~~qv~vsr~~~lg~~~--------------~~~~~NPVfii~a~K~e 185 (186)
T PRK08287 141 AHLEKIGACELDCVQLQVSSLTPLGAGH--------------YFKPNNPTFIIACKKEE 185 (186)
T ss_pred HHHHHCCCCCEEEEEEEEEECCCCCCCC--------------EEECCCCEEEEEEEECC
T ss_conf 9999769976159999901374727886--------------56168997999999468
No 86
>pfam08704 GCD14 tRNA methyltransferase complex GCD14 subunit. GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA.
Probab=98.10 E-value=3.7e-05 Score=49.50 Aligned_cols=132 Identities=15% Similarity=0.087 Sum_probs=85.1
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHCCC---C-C---EEEECHHHCCCC
Q ss_conf 999999750104897599965388111355312----3874887305899983231168---6-2---365333656775
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQYF---S-S---TALVSEGNLPLA 92 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~-~---~~~~d~~~LPf~ 92 (242)
-...|-.+++-.+|.+|+|-|.|+|-+...+.+ .++.++++...+.+..+..... . . ....|...--|+
T Consensus 90 D~s~I~~~ldi~PG~~VlEaGtGSGsLT~~Laravgp~G~v~t~E~~e~r~~~A~~n~~~~g~~~~v~~~~rDv~~~gf~ 169 (309)
T pfam08704 90 DISLIIMMLELKPGSVVCESGTGSGSLSHAIARTVAPTGHLYTFEFHEQRADKAREEFREHGLDSLVTVTHRDVCKSGFD 169 (309)
T ss_pred CHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCHHCCCCC
T ss_conf 09999998098999999983678429999999974888659998447899999999998749875058898520013666
Q ss_pred ---CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf ---4720200220247752299999999998469-998899973387740345653276656557888999999962876
Q gi|254780582|r 93 ---DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLT-SGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFT 168 (242)
Q Consensus 93 ---~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLk-PgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~ 168 (242)
++.+|.|++= +++|-.++..+.++|| |||+++.-+|.--. ..+..+-|+++||.
T Consensus 170 ~~~~~~~D~VfLD-----lp~PW~ai~~~~~~Lk~~Gg~l~~f~P~ieQ-----------------v~r~~~aL~~~gF~ 227 (309)
T pfam08704 170 TEVSNKADAVFLD-----LPAPWEAIPHAAKALKVEGGRLCSFSPCIEQ-----------------VQRTCLALAALGFT 227 (309)
T ss_pred CCCCCCCCEEEEC-----CCCHHHHHHHHHHHHCCCCCEEEEECCCHHH-----------------HHHHHHHHHHCCCC
T ss_conf 4456643589975-----8997998899998606899689999198999-----------------99999999977997
Q ss_pred CEEEEEEEE
Q ss_conf 212578983
Q gi|254780582|r 169 LSITSRSLF 177 (242)
Q Consensus 169 ~~~~~~~~~ 177 (242)
-.+....+.
T Consensus 228 ~i~t~E~l~ 236 (309)
T pfam08704 228 EIETIEVLP 236 (309)
T ss_pred CEEEEEEEE
T ss_conf 407999953
No 87
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.07 E-value=5.1e-05 Score=48.72 Aligned_cols=99 Identities=19% Similarity=0.218 Sum_probs=67.9
Q ss_pred EEEECCCCCHHH--HHHHCC-CCEEEEEECHHHHHHHHHCC--C----CCEEEECHHH--CCCCC-CCCCCHHHHHHHHH
Q ss_conf 999653881113--553123-87488730589998323116--8----6236533365--67754-72020022024775
Q gi|254780582|r 40 LLGLGYAIPFFS--CFHGKV-ERTLAFMPAGQGATNWPDQY--F----SSTALVSEGN--LPLAD-SSVDCVLMVHYLEF 107 (242)
Q Consensus 40 vLdiGcg~g~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~--~----~~~~~~d~~~--LPf~~-~sfD~Vi~~h~LE~ 107 (242)
++|+|||+|... ...... ...++++.+..+........ . ......+... +|+++ ..||.+ +.+...+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH 130 (257)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCEEEEE-EECCHHH
T ss_conf 588603854689999973578579993688899999998630045663576760421355675666657789-8612344
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf 22999999999984699988999733877403
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMW 139 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w 139 (242)
..++...++++.++++|+|.+++...+.....
T Consensus 131 ~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 162 (257)
T COG0500 131 LLPPAKALRELLRVLKPGGRLVLSDLLRDGLL 162 (257)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCC
T ss_conf 30289999999987078868999962444432
No 88
>pfam10294 Methyltransf_16 Putative methyltransferase.
Probab=97.99 E-value=5.5e-05 Score=48.51 Aligned_cols=103 Identities=13% Similarity=0.142 Sum_probs=64.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCC--CCEEEEEECHHHHHHHH---HCC--CCCEEEECHHHC-------CCCCCCCCCH
Q ss_conf 048975999653881113553123--87488730589998323---116--862365333656-------7754720200
Q gi|254780582|r 34 DVTGCRLLGLGYAIPFFSCFHGKV--ERTLAFMPAGQGATNWP---DQY--FSSTALVSEGNL-------PLADSSVDCV 99 (242)
Q Consensus 34 ~~~g~~vLdiGcg~g~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~--~~~~~~~d~~~L-------Pf~~~sfD~V 99 (242)
...|.+|||+|||+|......+.. ...+.+.+..+.+.... ..+ ....+.+..-++ -...+.||+|
T Consensus 42 ~~~~k~VLELGaG~GL~Gi~~a~~~~~~~V~lTD~~~~l~~l~~Nv~~N~~~~~~v~~~~LdWg~~~~~~~~~~~~fD~I 121 (171)
T pfam10294 42 NLSGKNVLELGSGCGLVGIAVALLLPGASVTITDLEEAIELMKKNIELNKALSSKVTAKVLDWGEELPDDVFDPHPVDLI 121 (171)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCHHHCCCCCCCEE
T ss_conf 40687678705665758999998579858996383789999999999705789966999811089884333146776789
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 2202477522999999999984699988999733877
Q gi|254780582|r 100 LMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 100 i~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
+++.++-..+....+++-+...|+|+|.+++..--+.
T Consensus 122 l~sD~iY~~~~~~~L~~ti~~ll~~~g~~lla~~~R~ 158 (171)
T pfam10294 122 LAADCVYNEDAFPLLVKTLKDLLGKETVILVAYKKRR 158 (171)
T ss_pred EEECEEECHHHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 9712133577799999999999589989999978206
No 89
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=97.98 E-value=3.5e-05 Score=49.67 Aligned_cols=94 Identities=18% Similarity=0.129 Sum_probs=65.4
Q ss_pred CCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHH----HC--CCCCEEEECHHHC-C--CCCCCCCCHHHHHH
Q ss_conf 975999653881113553123---87488730589998323----11--6862365333656-7--75472020022024
Q gi|254780582|r 37 GCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWP----DQ--YFSSTALVSEGNL-P--LADSSVDCVLMVHY 104 (242)
Q Consensus 37 g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~--~~~~~~~~d~~~L-P--f~~~sfD~Vi~~h~ 104 (242)
..-+||||||.|.....++.. ...+++++....+.... .. .....+.+|+..+ + ++++|+|.|.+..
T Consensus 55 ~p~~lEIGfG~G~~l~~~A~~~P~~~fIGiE~~~~gv~~~~~~~~~~~l~Ni~i~~~da~~~l~~~~~~~s~~~i~i~F- 133 (229)
T PRK00121 55 APIHLEIGFGRGEFLVEMAKANPDINFIGIEIHEPGVAKALKKIEEAGLKNLRLLCGDAVEVLEHFLPDGSLDRIYLNF- 133 (229)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHCCCCCCCEEEECC-
T ss_conf 9439996158969999999868888689999616999999999998299838988347899999714645414046717-
Q ss_pred HHHHCCH-------------HHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7752299-------------999999998469998899973387
Q gi|254780582|r 105 LEFAEDP-------------FLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 105 LE~~~dp-------------~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
+|| ..+|.++.++|+|||.+.+.+-+.
T Consensus 134 ----PDPWpKkrH~KRRli~~~fl~~~~~~Lk~~G~i~~~TD~~ 173 (229)
T PRK00121 134 ----PDPWPKKRHHKRRLVQPEFLELYARVLKPGGEFHFATDWE 173 (229)
T ss_pred ----CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCH
T ss_conf ----9999763202401289999999998579998899981879
No 90
>TIGR03534 RF_mod_HemK protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK, a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. However, the family is diverse enough that even many members of the seed alignment do not score above the seed alignment, which was set high enough to exclude all instances of PrmB.
Probab=97.93 E-value=7.5e-05 Score=47.75 Aligned_cols=119 Identities=14% Similarity=0.025 Sum_probs=71.3
Q ss_pred CCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHHC---CC---CCEEEECHHHCCCCCCCCCCHHHH----
Q ss_conf 897599965388111355312---38748873058999832311---68---623653336567754720200220----
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPDQ---YF---SSTALVSEGNLPLADSSVDCVLMV---- 102 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~d~~~LPf~~~sfD~Vi~~---- 102 (242)
...++||+|||+|-....+.. ....++.|.+..++..+..+ .. ...+.+|..+ ++.++.||+|++.
T Consensus 87 ~~~~ilDlgtGSG~I~i~la~~~~~~~v~~~Dis~~Al~~A~~N~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPYI 165 (251)
T TIGR03534 87 GPLKVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAKRLGLENVRFLKSDWFE-PLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCHHH-CCCCCCCCEEEECCCCC
T ss_conf 89869995567169999999967997899998987999999999998099826865131432-15689866899789988
Q ss_pred ----------HHHHHHC------------CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHH
Q ss_conf ----------2477522------------999999999984699988999733877403456532766565578889999
Q gi|254780582|r 103 ----------HYLEFAE------------DPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMIS 160 (242)
Q Consensus 103 ----------h~LE~~~------------dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~ 160 (242)
.+++|-+ ....+++++.+.|+|+|.+++-.-.- -...+.+
T Consensus 166 ~~~e~~~l~~eV~~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Eig~~------------------q~~~v~~ 227 (251)
T TIGR03534 166 PEADIHLLDPEVRFHEPKLALFAGEDGLDFYRRIIAQAPRYLKPGGWLLLEIGYD------------------QGEAVRA 227 (251)
T ss_pred CHHHHHHCCCHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECHH------------------HHHHHHH
T ss_conf 7456663286010267299971798469999999999998536798899996837------------------8999999
Q ss_pred HHHHCCCCCEEEE
Q ss_conf 9996287621257
Q gi|254780582|r 161 LLREANFTLSITS 173 (242)
Q Consensus 161 ~l~~~gf~~~~~~ 173 (242)
+++..||......
T Consensus 228 l~~~~gf~~i~~~ 240 (251)
T TIGR03534 228 LFEAAGFADVETR 240 (251)
T ss_pred HHHHCCCCEEEEE
T ss_conf 9996899706885
No 91
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.90 E-value=0.00014 Score=46.16 Aligned_cols=97 Identities=11% Similarity=0.058 Sum_probs=61.1
Q ss_pred CCCEEEEECCCCCH----HHHHHHCC--------CCEEEEEECHHHHHHHHHCCCC---------------------CE-
Q ss_conf 89759996538811----13553123--------8748873058999832311686---------------------23-
Q gi|254780582|r 36 TGCRLLGLGYAIPF----FSCFHGKV--------ERTLAFMPAGQGATNWPDQYFS---------------------ST- 81 (242)
Q Consensus 36 ~g~~vLdiGcg~g~----~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~---------------------~~- 81 (242)
..-+|.-.||++|. ++..+.+. ...++.|.+...+..++...-. ..
T Consensus 99 ~~lrIWsagCStGEE~YSlAm~l~e~~~~~~~~~~~I~aTDIs~~~L~~Ar~G~Y~~~~~~~~~~~~~~kyF~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCEEE
T ss_conf 97489977788882089999999997433489856999983999999999868989899846999999988065698899
Q ss_pred -----------EEECHHHCCCCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf -----------6533365677547202002202477522--99999999998469998899973
Q gi|254780582|r 82 -----------ALVSEGNLPLADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 82 -----------~~~d~~~LPf~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
...|.-+-..+...||+|+|-+||=+.+ ...++++.+++.|+|||.|++.-
T Consensus 179 v~~~lr~~v~F~~~NL~~~~~~~~~fDlI~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred ECHHHHCCCCEECCCCCCCCCCCCCCEEEEECCCEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 9889985091832789999877788419997632354599999999999999838993999827
No 92
>KOG1271 consensus
Probab=97.89 E-value=3.8e-05 Score=49.41 Aligned_cols=116 Identities=14% Similarity=0.097 Sum_probs=75.1
Q ss_pred CEEEEECCCCCHHHHHHHC-CC--CEEEEEECHHHHHHHH---HCCC----CCEEEECHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 7599965388111355312-38--7488730589998323---1168----62365333656775472020022024775
Q gi|254780582|r 38 CRLLGLGYAIPFFSCFHGK-VE--RTLAFMPAGQGATNWP---DQYF----SSTALVSEGNLPLADSSVDCVLMVHYLEF 107 (242)
Q Consensus 38 ~~vLdiGcg~g~~~~~~~~-~~--~~~~~~~~~~~~~~~~---~~~~----~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~ 107 (242)
.+|||+|||.|.+...+.. .. ...+.|.+..++.-++ +... ....+.|..+=.+.+..||+|.=-.+++-
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCCEEE
T ss_conf 21166157961889998871388886453157889999987887527885316887322577555543238960574122
Q ss_pred H--------CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 2--------299999999998469998899973387740345653276656557888999999962876212
Q gi|254780582|r 108 A--------EDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSI 171 (242)
Q Consensus 108 ~--------~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~ 171 (242)
+ ..+..-+.-+.+.|+|||.++|+-=| ++..+|.+-+...||+...
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN------------------~T~dELv~~f~~~~f~~~~ 202 (227)
T KOG1271 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN------------------FTKDELVEEFENFNFEYLS 202 (227)
T ss_pred EECCCCCCCCCEEEEHHHHHHCCCCCCEEEEEECC------------------CCHHHHHHHHHCCCEEEEE
T ss_conf 55077776654344355686303889679998557------------------6589999997259749999
No 93
>KOG2899 consensus
Probab=97.81 E-value=0.00021 Score=45.17 Aligned_cols=138 Identities=14% Similarity=0.086 Sum_probs=84.2
Q ss_pred CCCCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHCCCC--------------------------------
Q ss_conf 48975999653881113553123---8748873058999832311686--------------------------------
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQYFS-------------------------------- 79 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-------------------------------- 79 (242)
..++.+|||||..|.+....... ...+++|.++.-...+......
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a 136 (288)
T KOG2899 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRA 136 (288)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 47620575067754658999986064334676156899999997356601010334578754335444541012446651
Q ss_pred --------------CEEEECHHHCCCCCCCCCCHHHHHHHHHH------CCHHHHHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf --------------23653336567754720200220247752------2999999999984699988999733877403
Q gi|254780582|r 80 --------------STALVSEGNLPLADSSVDCVLMVHYLEFA------EDPFLMLHEIWRVLTSGGRMIVVVPNKRGMW 139 (242)
Q Consensus 80 --------------~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~------~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w 139 (242)
..+.-..+-|-+....||+|+|.-+--++ +--..+++.|++.|.|||.|+ +.|-||...
T Consensus 137 ~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-vEPQpWksY 215 (288)
T KOG2899 137 FTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-VEPQPWKSY 215 (288)
T ss_pred CCCCCCCCHHCCCCCEEEECCHHHHHCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEE-ECCCCHHHH
T ss_conf 0036772010132337986004555056542279997733467645645789999999998608685799-758861779
Q ss_pred HHHHHC-----CCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 456532-----7665655788899999996287621257
Q gi|254780582|r 140 ARMEHT-----PFGSGQPYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 140 ~~~~~~-----~~~~~r~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
.-..+. .-...-++.+....+||.+.+--.+..+
T Consensus 216 ~kaar~~e~~~~ny~~i~lkp~~f~~~l~q~~vgle~~e 254 (288)
T KOG2899 216 KKAARRSEKLAANYFKIFLKPEDFEDWLNQIVVGLESVE 254 (288)
T ss_pred HHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHEEEEC
T ss_conf 999999998605840103288898765420233232100
No 94
>pfam03269 DUF268 Caenorhabditis protein of unknown function, DUF268.
Probab=97.81 E-value=4.7e-05 Score=48.91 Aligned_cols=128 Identities=17% Similarity=0.165 Sum_probs=84.3
Q ss_pred CCCEEEEECCCCCHHHHHH-HC-CCCEEEEEECHHHHHHHHHCCCCCEEEEC--HHHCCCCCCCCCCHHHHHHHHHHC--
Q ss_conf 8975999653881113553-12-38748873058999832311686236533--365677547202002202477522--
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFH-GK-VERTLAFMPAGQGATNWPDQYFSSTALVS--EGNLPLADSSVDCVLMVHYLEFAE-- 109 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~LPf~~~sfD~Vi~~h~LE~~~-- 109 (242)
.|+++|-+|.-.|+..... .. +..+..+..+.-..... ......++.-. ..++---+++||++++.-.+||..
T Consensus 1 ~gk~glVvGS~~PWvE~~aL~~GA~~vlTvEYn~l~i~~~-~~~rlssi~p~ef~~~~~~~~~~FD~a~SfSSiEH~GLG 79 (177)
T pfam03269 1 DGKSGVVIGSMQPWVEVSALQNGASKILTVEYNKLTIQEE-FRDRLSSILPTDFAKNFKKYAESFDFAASFSSIEHSGLG 79 (177)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCCCCCCH-HHHCCCCCCHHHHHHHHHHHCCCEEEEEEEEEEEECCCC
T ss_conf 9951899847753999999981887348997235556613-321001156889999987523532389996124440565
Q ss_pred ------CH---HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf ------99---9999999984699988999733877403456532766565578889999999628762125
Q gi|254780582|r 110 ------DP---FLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSIT 172 (242)
Q Consensus 110 ------dp---~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~ 172 (242)
|| ...++++.++|||||.|++.+|- | .+...|...|-|.+.||..++ .||+....
T Consensus 80 RYGDpidp~Gdlk~m~~i~~~Lk~~G~l~l~vPi-----G-~d~v~fN~HRiYG~~Rl~~m~--~Gfewi~t 143 (177)
T pfam03269 80 RYGDPIDPIGDLREMLKIKCVLKKGGLLFLGLPL-----G-TDAIIFNAHRIYGSVRLAMMM--YGFEWIDT 143 (177)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECC-----C-CCCEEEECCEEECHHHHHHHH--CCCEEEEE
T ss_conf 5689779851099999999861789679999537-----7-761687034023466889986--48466544
No 95
>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.
Probab=97.79 E-value=0.00015 Score=46.12 Aligned_cols=113 Identities=16% Similarity=0.052 Sum_probs=71.8
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHHCC-------CCCEEEECHHHCCCC
Q ss_conf 9999999750104897599965388111355312---387488730589998323116-------862365333656775
Q gi|254780582|r 23 AISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPDQY-------FSSTALVSEGNLPLA 92 (242)
Q Consensus 23 ~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~LPf~ 92 (242)
.+...+-.+..-..|..+||..||+|-+..+... ....++.|.+..++.....+. .....++|..++|+.
T Consensus 15 ~lAa~l~~la~~~~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~i~~~~~D~~~l~~~ 94 (171)
T pfam01170 15 TLARAMVNLAGWKPGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDKIEFVQADAADLPLL 94 (171)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCC
T ss_conf 99999999858999997886899878999999996135895367587999999999999828998469997666538798
Q ss_pred CCCCCCHHHH--------HHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 4720200220--------24775229999999999846999889997338774
Q gi|254780582|r 93 DSSVDCVLMV--------HYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRG 137 (242)
Q Consensus 93 ~~sfD~Vi~~--------h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s 137 (242)
+++||.|++. ..-+.-+--..+++++.|+++ |+.+.+.+....
T Consensus 95 ~~~~d~Iv~nPPYG~r~~~~~~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~~ 145 (171)
T pfam01170 95 NGSVDTIVTDPPYGIRIGSKGALEKLYPAFLDEAKRVLR--GRLVFATPEKKD 145 (171)
T ss_pred CCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCEEEEEECCHH
T ss_conf 788318998898201136545699999999999998689--978999968689
No 96
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=97.79 E-value=0.00026 Score=44.71 Aligned_cols=120 Identities=10% Similarity=-0.012 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH--H--HHHHCCCCEEEEEECHHHHHHHHHCC---CCC---EEE
Q ss_conf 8898999999999999750104897599965388111--3--55312387488730589998323116---862---365
Q gi|254780582|r 14 SFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFF--S--CFHGKVERTLAFMPAGQGATNWPDQY---FSS---TAL 83 (242)
Q Consensus 14 s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~ 83 (242)
.|-...+...+-..+.+.+++....++||+|+|.|-. . ...........++.+..+........ ... ...
T Consensus 12 ~pa~Yaa~~~vl~Ei~~r~p~f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~~~ 91 (275)
T pfam09243 12 LPATYAAVRASLDELAERVPQFAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAWRA 91 (275)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEC
T ss_conf 45779999999999998679999875777277579999999988424768999748999999999998518434543111
Q ss_pred ECHHHCCCCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 33365677547202002202477522--99999999998469998899973387
Q gi|254780582|r 84 VSEGNLPLADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 84 ~d~~~LPf~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
.+.......-..+|+|+++|+|.-.. +-..+++++|..+. |.||++.|.-
T Consensus 92 ~~~~~~~~~~~~~DLVi~sy~L~El~~~~R~~~v~~LW~~~~--g~LVlVEpGt 143 (275)
T pfam09243 92 RDVIGAALDFEPADLVTISYVLDELTPASREKVIDNLWAKAA--QALVIVEPGT 143 (275)
T ss_pred CCCCCCCCCCCCCCEEEEECHHCCCCHHHHHHHHHHHHHHCC--CEEEEEECCC
T ss_conf 431011245898788996142207997899999999999539--9799991898
No 97
>pfam02390 Methyltransf_4 Putative methyltransferase. This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity.
Probab=97.79 E-value=8.2e-05 Score=47.52 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=64.7
Q ss_pred CCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHH----H--CCCC-CEEEECHHH-CC--CCCCCCCCHHHHH
Q ss_conf 975999653881113553123---87488730589998323----1--1686-236533365-67--7547202002202
Q gi|254780582|r 37 GCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWP----D--QYFS-STALVSEGN-LP--LADSSVDCVLMVH 103 (242)
Q Consensus 37 g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~----~--~~~~-~~~~~d~~~-LP--f~~~sfD~Vi~~h 103 (242)
+--+||||||.|.+...++.. ...++++.....+.... . ...+ ..+.+|+.. ++ ++++++|.|.+..
T Consensus 21 ~pi~lEIG~G~G~~l~~~A~~~p~~n~iGiEi~~~~v~~~~~k~~~~~~l~Ni~~~~~da~~~l~~~~~~~~l~~i~i~F 100 (199)
T pfam02390 21 QPLFLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALRGLQNLRILCGDAMKLLPNLFPDGSLQKIFINF 100 (199)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHCCCCCEEEEEEEC
T ss_conf 94499973688899999999789987899995059999999999984577737876047999999757988642799967
Q ss_pred HHHHHCCH-------------HHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 47752299-------------9999999984699988999733877
Q gi|254780582|r 104 YLEFAEDP-------------FLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 104 ~LE~~~dp-------------~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
+|| ..+|+++.++|+|||.+.+.+-+..
T Consensus 101 -----PDPWpKkrH~KRRli~~~fl~~~~~~Lk~gG~l~~~TD~~~ 141 (199)
T pfam02390 101 -----PDPWPKKRHHKRRLLQPEFLKEYARVLKPGGVLHLATDVEE 141 (199)
T ss_pred -----CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf -----99987644244000799999999996388989999828999
No 98
>TIGR00477 tehB tellurite resistance protein TehB; InterPro: IPR004537 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases . Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite.; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0046690 response to tellurium ion, 0005737 cytoplasm.
Probab=97.76 E-value=5.8e-05 Score=48.39 Aligned_cols=101 Identities=17% Similarity=0.122 Sum_probs=70.1
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCCC-EEEEEECHHHHH-----HHHHCCC-CCEEEECHHHCCCCCCCCCCHHHHHH
Q ss_conf 0104897599965388111355312387-488730589998-----3231168-62365333656775472020022024
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPFFSCFHGKVER-TLAFMPAGQGAT-----NWPDQYF-SSTALVSEGNLPLADSSVDCVLMVHY 104 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~-~~~~~~d~~~LPf~~~sfD~Vi~~h~ 104 (242)
..-....++||+|||.|..+.+++-.+- +.+.|-+...+. +..+.-. .++...|..++-|. +.+|.|++.=|
T Consensus 69 vk~v~PcKtLDLGCGqGrNsLyLsl~GYDV~awD~n~~siA~v~~~k~~EnL~nl~t~~yDiNaa~~~-e~YDFI~sTVV 147 (239)
T TIGR00477 69 VKVVKPCKTLDLGCGQGRNSLYLSLAGYDVDAWDHNEASIASVEEIKEKENLDNLRTDVYDINAAALD-EDYDFILSTVV 147 (239)
T ss_pred HHCCCCCCEEECCCCCCHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC-CCCCEEEEEHH
T ss_conf 50237986532688885378999761684101216866887599888762671100465543355401-27874210201
Q ss_pred HHHHC--CHHHHHHHHHHHCCCCCE-EEEEEC
Q ss_conf 77522--999999999984699988-999733
Q gi|254780582|r 105 LEFAE--DPFLMLHEIWRVLTSGGR-MIVVVP 133 (242)
Q Consensus 105 LE~~~--dp~~~L~Ei~RvLkPgG~-lii~~~ 133 (242)
|=|.+ .--.++..+.+..+|||+ ||+.--
T Consensus 148 f~FL~a~rvP~iIanMq~hT~pGGYNLIVaAM 179 (239)
T TIGR00477 148 FMFLEAERVPEIIANMQEHTKPGGYNLIVAAM 179 (239)
T ss_pred HHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 22105887726788658746798732223321
No 99
>KOG1709 consensus
Probab=97.74 E-value=0.00036 Score=43.88 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=67.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHCC--CCEEEEEECHHHHHHHHH---CCCCCEEEE--C-HHHC-CCCCCCCCCHHHHHHH
Q ss_conf 48975999653881113553123--874887305899983231---168623653--3-3656-7754720200220247
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGKV--ERTLAFMPAGQGATNWPD---QYFSSTALV--S-EGNL-PLADSSVDCVLMVHYL 105 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~--d-~~~L-Pf~~~sfD~Vi~~h~L 105 (242)
.+|.+||.+|.|-|....+.-.. ...+.+...+.-..+.+. .....++.. - .+-+ -++|.+||-|.--.-=
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred HCCCEEEEECCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCCCCCCCEEEEECHH
T ss_conf 17964898423167788888635986317873597899999863665445468871346764401445675626751301
Q ss_pred HHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 752299999999998469998899973387740
Q gi|254780582|r 106 EFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM 138 (242)
Q Consensus 106 E~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~ 138 (242)
|+.+|...+-+.+.|.|||+|. ++-||-.|.
T Consensus 180 e~yEdl~~~hqh~~rLLkP~gv--~SyfNg~~~ 210 (271)
T KOG1709 180 ELYEDLRHFHQHVVRLLKPEGV--FSYFNGLGA 210 (271)
T ss_pred HHHHHHHHHHHHHHHHCCCCCE--EEEECCCCC
T ss_conf 6789999999877640087744--888437664
No 100
>KOG1499 consensus
Probab=97.71 E-value=8.7e-05 Score=47.38 Aligned_cols=104 Identities=15% Similarity=0.150 Sum_probs=62.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCC--CCEEEEEECHH--HHHHHHHCCCC----CEEEECHHHCCCCCCCCCCHHHH--
Q ss_conf 1048975999653881113553123--87488730589--99832311686----23653336567754720200220--
Q gi|254780582|r 33 DDVTGCRLLGLGYAIPFFSCFHGKV--ERTLAFMPAGQ--GATNWPDQYFS----STALVSEGNLPLADSSVDCVLMV-- 102 (242)
Q Consensus 33 ~~~~g~~vLdiGcg~g~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~----~~~~~d~~~LPf~~~sfD~Vi~~-- 102 (242)
....++.|||+|||+|.++.+.+.+ .++++++.+.- .+......+.. ..+.+..|++-++-+.+|+|++-
T Consensus 57 ~lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499 57 HLFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEEECCEEEEECCCCCEEEEEEHHH
T ss_conf 33079789975788128899988737533999962689999999998568660599950305787647554029963012
Q ss_pred -HHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf -2477522999999999984699988999733877403
Q gi|254780582|r 103 -HYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMW 139 (242)
Q Consensus 103 -h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w 139 (242)
+.|=+-.=-..+|-.=.+.|+|||.++ |+...+|
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~---P~~a~l~ 171 (346)
T KOG1499 137 GYFLLYESMLDSVLYARDKWLKEGGLIY---PDRATLY 171 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEC---CCCCEEE
T ss_conf 4787776566645533330047795576---6611378
No 101
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=97.68 E-value=0.00033 Score=44.10 Aligned_cols=96 Identities=11% Similarity=0.051 Sum_probs=59.6
Q ss_pred CCCEEEEECCCCCH----HHHHHHCC--------CCEEEEEECHHHHHHHHHCC----------------------CCCE
Q ss_conf 89759996538811----13553123--------87488730589998323116----------------------8623
Q gi|254780582|r 36 TGCRLLGLGYAIPF----FSCFHGKV--------ERTLAFMPAGQGATNWPDQY----------------------FSST 81 (242)
Q Consensus 36 ~g~~vLdiGcg~g~----~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~----------------------~~~~ 81 (242)
..-+|.-.||++|. ++..+.+. ...++.|.+.+.+..++... ....
T Consensus 30 ~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~~~~ 109 (194)
T pfam01739 30 RRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAGGGY 109 (194)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCCCCE
T ss_conf 95599973688995189999999997432578744999973988999999878988999845999999962860789948
Q ss_pred ------------EEECHHHCCCCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf ------------6533365677547202002202477522--99999999998469998899973
Q gi|254780582|r 82 ------------ALVSEGNLPLADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 82 ------------~~~d~~~LPf~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
...|.-+-|. ...||+|+|-+||=+.+ ....+++.+++.|+|||.|++.-
T Consensus 110 ~i~~~lr~~V~F~~~NL~~~~~-~~~~DlIfCRNVlIYF~~~~~~~vl~~l~~~L~~gG~L~lG~ 173 (194)
T pfam01739 110 RVKPEIKEMVLFEYHNLLDYPP-LGDFDVIFCRNVLIYFDEETQRKILNRFASALKPGGYLFLGH 173 (194)
T ss_pred EECHHHHCCCEEEECCCCCCCC-CCCEEEEEECCEEEECCHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 7688997116685466556887-675039998021013799999999999999848994999807
No 102
>TIGR00537 hemK_rel_arch methylase, putative; InterPro: IPR004557 These proteins exhibit homology to the Saccharomyces cerevisiae (yeast) ORF YDR140w (FYV9). No known function has been described for this yeast ORF though the null mutant is viable and exhibits K1 killer toxin hypersensitivity. Members of this entry are weakly related to the yeast ORF YNL063w which is a putative S-adenosyl-methionine-dependent methyltransferase . Members of this entry are found in archaeal, bacterial and eukaryotic lineages.; GO: 0008168 methyltransferase activity.
Probab=97.65 E-value=0.00029 Score=44.40 Aligned_cols=129 Identities=15% Similarity=0.142 Sum_probs=84.4
Q ss_pred HHHHCCCCCCCE-EEEECCCCCHHHHHHHCCCC--EEEEEECHHHHHHHHHCCC----CC-EEEECHHHCCCCCCCCCCH
Q ss_conf 997501048975-99965388111355312387--4887305899983231168----62-3653336567754720200
Q gi|254780582|r 28 LSTTWDDVTGCR-LLGLGYAIPFFSCFHGKVER--TLAFMPAGQGATNWPDQYF----SS-TALVSEGNLPLADSSVDCV 99 (242)
Q Consensus 28 l~~~l~~~~g~~-vLdiGcg~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~-~~~~d~~~LPf~~~sfD~V 99 (242)
|..-+....+.+ ||+||.|+|+.+...+.-+. .++.|.++-++...+++.. .. .+..| -.-+...+.||+|
T Consensus 12 L~~nL~~~k~ddeVlEiG~GtGlvair~~~Kg~k~i~~tDinP~Avk~~~~NA~~N~~~l~v~~~D-lf~~v~geKFdvi 90 (183)
T TIGR00537 12 LEANLRELKPDDEVLEIGAGTGLVAIRLKEKGKKKILTTDINPFAVKLLRENAKLNNVELDVLETD-LFEGVRGEKFDVI 90 (183)
T ss_pred HHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCHHCCCCEEEEECC-CCCCCCCCCEEEE
T ss_conf 999867516995289971680489999851588207886368799998773100026640476111-3578555510277
Q ss_pred HHHH-HHHHHCC--------------------HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHH
Q ss_conf 2202-4775229--------------------999999999846999889997338774034565327665655788899
Q gi|254780582|r 100 LMVH-YLEFAED--------------------PFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQM 158 (242)
Q Consensus 100 i~~h-~LE~~~d--------------------p~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l 158 (242)
+..- -|+..+| -..+|.|+-..|++||++.++--. + -.....
T Consensus 91 LFNpPYlp~~~d~~~gd~Ld~A~dGGkdGr~vidrFldelp~~lk~gGrv~l~~SS---l--------------~~e~~~ 153 (183)
T TIGR00537 91 LFNPPYLPLEDDEKRGDYLDLAIDGGKDGRKVIDRFLDELPEYLKEGGRVQLIQSS---L--------------SDEKDT 153 (183)
T ss_pred EECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC---C--------------CCCHHH
T ss_conf 30789888876523476644333178730578888876568887059989999606---6--------------886889
Q ss_pred HHHHHHCCCCCEEEEE
Q ss_conf 9999962876212578
Q gi|254780582|r 159 ISLLREANFTLSITSR 174 (242)
Q Consensus 159 ~~~l~~~gf~~~~~~~ 174 (242)
.+.|+..||+.+=.-.
T Consensus 154 ~~kl~~~GF~~ei~a~ 169 (183)
T TIGR00537 154 LDKLDELGFKVEIVAE 169 (183)
T ss_pred HHHHHHCCCCEEEEEC
T ss_conf 9887615884799863
No 103
>pfam05724 TPMT Thiopurine S-methyltransferase (TPMT). This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines.
Probab=97.64 E-value=0.00076 Score=42.02 Aligned_cols=139 Identities=11% Similarity=0.022 Sum_probs=89.3
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHC------------------CCCCEEEECHHHCCCC-
Q ss_conf 104897599965388111355312-38748873058999832311------------------6862365333656775-
Q gi|254780582|r 33 DDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQ------------------YFSSTALVSEGNLPLA- 92 (242)
Q Consensus 33 ~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~d~~~LPf~- 92 (242)
....|.+||--|||.++-...+.. +..+++++.+..++....+. ......++|.-+|+-+
T Consensus 19 ~~~~~~rvlVPlCGks~D~~wLa~~G~~VvGvels~~Av~~ff~e~~~~~~~~~~~~~~~~~~~~i~i~~gD~F~l~~~~ 98 (203)
T pfam05724 19 NLPPGLRVLVPLCGKALDMVWLAEQGHFVVGVEISELAVEKFFAEANLSPPITELSGFKEYRAGGIELLCGDFFTLPREE 98 (203)
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCEECCCCEEECCCCEEEEECCHHCCCHHH
T ss_conf 89999889996899859999998389848999567999999999737887510136621320586489977321378434
Q ss_pred CCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 47202002202477522--9999999999846999889997338774034565327665655788899999996287621
Q gi|254780582|r 93 DSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLS 170 (242)
Q Consensus 93 ~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~ 170 (242)
.++||+|.=...|.-++ .-.+-.+.+.++|+|||+.++++..... +.....|| ..+..+++++.. .+|+++
T Consensus 99 ~g~fD~IyDraal~ALpp~~R~~Ya~~l~~lL~pgg~~lLitl~y~~--~~~~GPPf----sv~~~Ev~~lf~-~~f~i~ 171 (203)
T pfam05724 99 LGKFDLIYDRAALCALPPEMRPRYAKQMYELLPPGGEGLLITLDYPQ--TDHEGPPF----SVPAAELEALFG-GGWKVA 171 (203)
T ss_pred CCCCCEEEEECCEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEECCC--CCCCCCCC----CCCHHHHHHHHC-CCCEEE
T ss_conf 68734899703235389899999999999971899669999997386--55799489----899999998708-985699
Q ss_pred EEEEEEEE
Q ss_conf 25789830
Q gi|254780582|r 171 ITSRSLFF 178 (242)
Q Consensus 171 ~~~~~~~~ 178 (242)
..+...-.
T Consensus 172 ~L~~~d~~ 179 (203)
T pfam05724 172 RLEREDAL 179 (203)
T ss_pred EEEEECCC
T ss_conf 96500445
No 104
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.62 E-value=0.0002 Score=45.36 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=63.5
Q ss_pred CCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHH----HCCC-C-CEEEECHHHC---CCCCCCCCCHHHHHH
Q ss_conf 975999653881113553123---87488730589998323----1168-6-2365333656---775472020022024
Q gi|254780582|r 37 GCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWP----DQYF-S-STALVSEGNL---PLADSSVDCVLMVHY 104 (242)
Q Consensus 37 g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~~-~-~~~~~d~~~L---Pf~~~sfD~Vi~~h~ 104 (242)
...+||||||.|.+...++.. ...++++.....+.... +... + +.++.|+.++ =++++|+|.|.+.-
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F- 127 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF- 127 (227)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEEEEEEC-
T ss_conf 9669996888987899999878987789999734899999999998299846998077999997358988565799979-
Q ss_pred HHHHCCH-------------HHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 7752299-------------9999999984699988999733877
Q gi|254780582|r 105 LEFAEDP-------------FLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 105 LE~~~dp-------------~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
+|| ..+|.++.|+|+|||.+.+.+-|..
T Consensus 128 ----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD~~~ 168 (227)
T COG0220 128 ----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168 (227)
T ss_pred ----CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCHH
T ss_conf ----99998766433214788999999997268978999726799
No 105
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=97.57 E-value=0.00084 Score=41.75 Aligned_cols=119 Identities=12% Similarity=0.025 Sum_probs=69.6
Q ss_pred CCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHHCC---C---CCEEEECHHHCCCCCCCCCCHHHH----
Q ss_conf 897599965388111355312---387488730589998323116---8---623653336567754720200220----
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPDQY---F---SSTALVSEGNLPLADSSVDCVLMV---- 102 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~d~~~LPf~~~sfD~Vi~~---- 102 (242)
...++||+|||+|-....+.. ...+++.|.+..++..+..+. . ...+..|. .-++.+..||+||+.
T Consensus 109 ~~~~ilDlgtGSGcI~isLa~~~p~~~v~a~DiS~~Al~~A~~Na~~~~l~~v~~~~~d~-~~~~~~~~fDlIVSNPPYI 187 (277)
T PRK09328 109 QPCRILDLGTGTGAIALALASERPDCEVTAVDRMPDAVALAQRNAQHLAIKNVRILQSDW-FSALSGQQFAMIVSNPPYI 187 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEEECCC-HHHCCCCCCCEEEECCCCC
T ss_conf 788189954556999999998677989999648999999999999980988699994475-2113787778899789987
Q ss_pred -----HHHHHH--CC--------------HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHH
Q ss_conf -----247752--29--------------999999999846999889997338774034565327665655788899999
Q gi|254780582|r 103 -----HYLEFA--ED--------------PFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISL 161 (242)
Q Consensus 103 -----h~LE~~--~d--------------p~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~ 161 (242)
+.++.. -+ ...++.++.+.|+|||.+++-.-. . -...+.++
T Consensus 188 ~~~~~~~~~~~v~~EP~~AL~gg~dGl~~~~~ii~~a~~~L~~~G~l~~Eig~---------------~---Q~~~v~~l 249 (277)
T PRK09328 188 DAQDPHLQQGDVRFEPLSALVAADNGMADLAHIIEQARQYLVPGGWLLLEHGW---------------Q---QGEAVRQL 249 (277)
T ss_pred CCCHHHHCCHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECH---------------H---HHHHHHHH
T ss_conf 70003438242166838998179758999999999999844669899999681---------------5---89999999
Q ss_pred HHHCCCCCEEEE
Q ss_conf 996287621257
Q gi|254780582|r 162 LREANFTLSITS 173 (242)
Q Consensus 162 l~~~gf~~~~~~ 173 (242)
++..||......
T Consensus 250 ~~~~gf~~i~~~ 261 (277)
T PRK09328 250 FIRAGYSDVETC 261 (277)
T ss_pred HHHCCCCEEEEE
T ss_conf 996799704786
No 106
>pfam05891 Hydroxy-O-Methy Putative hydroxyindole-O-methyltransferase. This family of proteins is a putative hydroxyindole-O-methyltransferase and by homology, is expected to catalyse the conversion of N-acetyl serotonin to melatonin. The protein is expressed in the tail neuron PVT and in uterine cells [worm-base].
Probab=97.53 E-value=0.0021 Score=39.51 Aligned_cols=140 Identities=11% Similarity=0.046 Sum_probs=89.5
Q ss_pred CEEEEECCCCCHHH-HHHHCC-CCEEEEEECHHHHHHHHHC------CCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 75999653881113-553123-8748873058999832311------686236533365677547202002202477522
Q gi|254780582|r 38 CRLLGLGYAIPFFS-CFHGKV-ERTLAFMPAGQGATNWPDQ------YFSSTALVSEGNLPLADSSVDCVLMVHYLEFAE 109 (242)
Q Consensus 38 ~~vLdiGcg~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~ 109 (242)
.++||.|+|.|-.. .++... ..+-..+|....+..+... ......++..+++--+.+.+|+|.+.=++-|..
T Consensus 57 ~~alDcGAGIGRVTk~lL~~~f~~VDlVEpv~~Fl~~ak~~l~~~~~~~~~~~~~gLQdf~P~~~~YD~IW~QW~~ghLt 136 (217)
T pfam05891 57 LVALDCGAGIGRVTKNLLLPLFSKVDLVEPVEDFLAKAKEYLAEEKKKVGNFFCVGLQDFTPEEGRYDLIWIQWCIGHLT 136 (217)
T ss_pred CEEEECCCCCCEECHHHHHHHCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCEEEEEEEHHHHCCCC
T ss_conf 26654267636112667887548135754449999999998740379765389736101689998176998058452188
Q ss_pred C--HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 9--9999999998469998899973387740345653276656557888999999962876212578983086
Q gi|254780582|r 110 D--PFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180 (242)
Q Consensus 110 d--p~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~~~~~pp 180 (242)
| -.++|+.+...|+|+|.+++=.=+. +---..+..- ..-.-+...++++++++|+++...+.--.+|.
T Consensus 137 D~dlv~Fl~RCk~~L~~~G~IvvKEN~~-~~~~~~D~~D--sSvTRs~~~~~~lF~~AGl~~v~~~~Q~gfP~ 206 (217)
T pfam05891 137 DEDLVAFLKRCKSGLKPNGIIVIKENVT-QEGVIFDDVD--SSVTRGEASFRKIFKKAGLKLVAEERQKGLPQ 206 (217)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCC-CCCCEECCCC--CCCCCCHHHHHHHHHHCCCEEEEHHHHCCCCC
T ss_conf 8999999999998478986499842236-7777415654--54317799999999985985660433068995
No 107
>pfam02475 Met_10 Met-10+ like-protein. The methionine-10 mutant allele of N. crassa codes for a protein of unknown function. However, homologous proteins have been found in yeast suggesting this protein may be involved in methionine biosynthesis, transport and/or utilisation.
Probab=97.52 E-value=0.00081 Score=41.85 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=68.4
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHH---CCC----CCEEEECHHHCCC
Q ss_conf 99999999750104897599965388111355312---3874887305899983231---168----6236533365677
Q gi|254780582|r 22 DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPD---QYF----SSTALVSEGNLPL 91 (242)
Q Consensus 22 ~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~d~~~LPf 91 (242)
..|+.++.+.. ..|..|||.-||.|.+...++. ...+++.|.++.+...... .+. ...+.+|..++ .
T Consensus 88 ~~Er~ri~~~~--~~ge~VlD~faGvG~f~l~~ak~~~~~~V~a~DlNp~a~~~l~~N~~lN~v~~~i~~~~gD~~~~-~ 164 (199)
T pfam02475 88 IGERERIAKLV--KEGEVVVDMFAGIGPFSIPIAKHSKAKRVYAVELNPEAVKYLKENIKLNKVEGVISPILGDVRDV-I 164 (199)
T ss_pred HHHHHHHHHHC--CCCCEEEECCCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCHHHH-C
T ss_conf 58899999744--89988998168865778998640786489998289999999999999809998369992878786-0
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 54720200220247752299999999998469998899
Q gi|254780582|r 92 ADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMI 129 (242)
Q Consensus 92 ~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~li 129 (242)
....||.|++..- .....+|.++.+.||+||.+-
T Consensus 165 ~~~~~DrvimnlP----~~a~~fL~~A~~~lk~gg~iH 198 (199)
T pfam02475 165 LEGVADRVIMNLP----KSAHEFLDKALRAVKDGGVIH 198 (199)
T ss_pred CCCCCCEEEECCC----CCHHHHHHHHHHHHCCCCEEE
T ss_conf 4674009994897----316999999999855898983
No 108
>TIGR00740 TIGR00740 methyltransferase, putative; InterPro: IPR005271 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order . Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI ), shared by other AdoMet-Mtases , is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments , although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases , , , . The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences . The proteins of this family are restricted to the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 0dentity. It is reasonable to predict equivalent function within this subfamily. .
Probab=97.51 E-value=0.00076 Score=42.00 Aligned_cols=124 Identities=12% Similarity=0.109 Sum_probs=81.8
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCC-----CCEEEEEECHHHHHHHHHC-------CCCCEEEECHHHCCCCCCCCCCHHH
Q ss_conf 048975999653881113553123-----8748873058999832311-------6862365333656775472020022
Q gi|254780582|r 34 DVTGCRLLGLGYAIPFFSCFHGKV-----ERTLAFMPAGQGATNWPDQ-------YFSSTALVSEGNLPLADSSVDCVLM 101 (242)
Q Consensus 34 ~~~g~~vLdiGcg~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~LPf~~~sfD~Vi~ 101 (242)
..++..|=|+||..|-......+. -..+++|-|..++.+.+.. .+...++.|..+..+++.| .+++
T Consensus 59 slp~~~vYDLGCS~G~~~l~~~R~I~~~~~~~igIDNS~pM~~~~~~~~~~y~~~~Pv~~~~~D~~~v~~~~AS--~~~L 136 (247)
T TIGR00740 59 SLPKPLVYDLGCSTGAATLSLRRNIQQDNIKIIGIDNSMPMLERCREHIKAYKNAIPVEVLCMDIREVEIKNAS--MVVL 136 (247)
T ss_pred CCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHH--HHHH
T ss_conf 16887412233432357766530468785379884188889999999998742478823201024566665546--8878
Q ss_pred HHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCC--HH--HHH-HCCCCCCCCCCHHHHH
Q ss_conf 02477522--99999999998469998899973387740--34--565-3276656557888999
Q gi|254780582|r 102 VHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGM--WA--RME-HTPFGSGQPYSWYQMI 159 (242)
Q Consensus 102 ~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~--w~--~~~-~~~~~~~r~~~~~~l~ 159 (242)
..+|.|++ +-..+|..|..-|.|+|.|+++.--..-- -+ +.+ +..|...+.||..++.
T Consensus 137 ~F~LQFl~P~~R~~LL~KIY~~L~~nGvL~lsEK~~~ED~~~~~~li~l~~~fK~~~GYS~~Ei~ 201 (247)
T TIGR00740 137 NFTLQFLRPEEREALLKKIYNGLNPNGVLVLSEKFMFEDRKLDKLLIELHHLFKRANGYSELEIS 201 (247)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 87760478234799999987410778668863201366789999999999998741587234688
No 109
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.50 E-value=0.00017 Score=45.76 Aligned_cols=105 Identities=19% Similarity=0.106 Sum_probs=67.1
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHC----CCCC---EEE-ECH-HHCC-C
Q ss_conf 9999750104897599965388111355312----38748873058999832311----6862---365-333-6567-7
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQ----YFSS---TAL-VSE-GNLP-L 91 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~----~~~~---~~~-~d~-~~LP-f 91 (242)
+.|..++......++||||.+.||-...+.. .++.++++.++..+..+++. .... .+. +|. +.+- +
T Consensus 49 ~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~ 128 (219)
T COG4122 49 ALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL 128 (219)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHC
T ss_conf 99999997349864999635237999999963888976999707989999999999975976528988357479999733
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 547202002202477522999999999984699988999733
Q gi|254780582|r 92 ADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 92 ~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
.+++||.|+.=+.= .+-..+++++.+.|+|||.+++-..
T Consensus 129 ~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNv 167 (219)
T COG4122 129 LDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNV 167 (219)
T ss_pred CCCCCCEEEEECCH---HHCHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 47885689983784---3599999999997378968998303
No 110
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.41 E-value=0.001 Score=41.32 Aligned_cols=94 Identities=10% Similarity=0.064 Sum_probs=59.2
Q ss_pred CCCEEEEECCCCCHHHHHHH---CCCCEEEEEECHHHHHHHHHCCC-------CCEEEEC-HHHCCCCCCCCCCHHHH--
Q ss_conf 89759996538811135531---23874887305899983231168-------6236533-36567754720200220--
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHG---KVERTLAFMPAGQGATNWPDQYF-------SSTALVS-EGNLPLADSSVDCVLMV-- 102 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d-~~~LPf~~~sfD~Vi~~-- 102 (242)
...++||+|+|+|-....+. ....+++.|.|..++..+..+.. ...+..| .+ ++..+.||.||+.
T Consensus 135 ~~~~ILDLGTGSGcIaISLa~e~p~a~v~avDIS~~AL~vAk~Na~~~~v~~ri~fi~sdwfe--~l~~~kFDlIVSNPP 212 (503)
T PRK01544 135 KFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE--NIGKQKFDFIVSNPP 212 (503)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCHH--CCCCCCCCEEEECCC
T ss_conf 577278846667999999998678998999989899999999999980882017999655310--158887247983899
Q ss_pred ------------HHHHHHCCHHHH--------------HHHHHHHCCCCCEEEEEEC
Q ss_conf ------------247752299999--------------9999984699988999733
Q gi|254780582|r 103 ------------HYLEFAEDPFLM--------------LHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 103 ------------h~LE~~~dp~~~--------------L~Ei~RvLkPgG~lii~~~ 133 (242)
.|+.| +|+.+ ..++.+.|+|+|++++-.-
T Consensus 213 YI~~~e~~~L~~eV~~y--EP~lAL~ggeDGL~~Yr~Ia~~a~~~Lkp~G~l~lEIG 267 (503)
T PRK01544 213 YISHSEKSEMAIETINY--EPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIG 267 (503)
T ss_pred CCCHHHHHHCCHHHHCC--CCHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 88756666527665316--93788648876289999999988985288988999978
No 111
>pfam01596 Methyltransf_3 O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase, and a family of bacterial O-methyltransferases that may be involved in antibiotic production.
Probab=97.37 E-value=0.0016 Score=40.25 Aligned_cols=106 Identities=10% Similarity=-0.082 Sum_probs=64.6
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH----CCCCEEEEEECHHHHHHHHHC----C---CCCEEEECHH-HCC-
Q ss_conf 99999975010489759996538811135531----238748873058999832311----6---8623653336-567-
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG----KVERTLAFMPAGQGATNWPDQ----Y---FSSTALVSEG-NLP- 90 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~d~~-~LP- 90 (242)
+.+.|.-+..-....++||||.++||-...+. ..+..++++...+....+... . ....+.+|+. .|+
T Consensus 32 ~g~~L~~l~~~~~ak~iLEiGT~~GySal~lA~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gdA~~~l~~ 111 (204)
T pfam01596 32 EGQFLSMLVKLVGAKRTLEIGVFTGYSLLATALALPEDGKITACDIDREAYEIGLPFIQKAGVADKIEFRVGDALKTLEQ 111 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHH
T ss_conf 99999999997598789998343259999999848999689999804899999999999779874479998749999999
Q ss_pred ----CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf ----754720200220247752299999999998469998899973
Q gi|254780582|r 91 ----LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 91 ----f~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
-++++||.|+.=.-= .+-...++.+.+.|+|||.+++-.
T Consensus 112 l~~~~~~~~fD~vFiDadK---~~Y~~y~e~~~~lL~~gGiii~DN 154 (204)
T pfam01596 112 LVEDKPLGEFDFAFVDADK---SSYPNYYERLLELVKVGGLIAIDN 154 (204)
T ss_pred HHHCCCCCCCCEEEEECCH---HHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9844777764389981888---777999999998636980999944
No 112
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.35 E-value=0.0022 Score=39.35 Aligned_cols=162 Identities=20% Similarity=0.140 Sum_probs=91.1
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH---HHCCCCEEEEEECHHHHHHHH---HCCC--CCEEEECHHHCC--C
Q ss_conf 99999999750104897599965388111355---312387488730589998323---1168--623653336567--7
Q gi|254780582|r 22 DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCF---HGKVERTLAFMPAGQGATNWP---DQYF--SSTALVSEGNLP--L 91 (242)
Q Consensus 22 ~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~d~~~LP--f 91 (242)
..-.+....++....|.+|||+-+|.|.-... +.....+++.|.+..-+.... .... .....+|..... .
T Consensus 231 D~aSql~~~ll~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~~v~~~d~~~~~~~~ 310 (428)
T PRK10901 231 DASAQGCVTLLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWC 310 (428)
T ss_pred CHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHC
T ss_conf 72767899864988898798716887668999999645892899969888999999999975997399977655723313
Q ss_pred CCCCCCCHHH----------------------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCC
Q ss_conf 5472020022----------------------024775229999999999846999889997338774034565327665
Q gi|254780582|r 92 ADSSVDCVLM----------------------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149 (242)
Q Consensus 92 ~~~sfD~Vi~----------------------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~ 149 (242)
.++.||.|++ .+.-+...-..++|+.+++.|+|||.|+-++=.-.- .
T Consensus 311 ~~~~fD~ILlDaPCSg~G~lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~-----e------ 379 (428)
T PRK10901 311 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLP-----E------ 379 (428)
T ss_pred CCCCCCEEEECCCCCCCEEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH-----H------
T ss_conf 44567879975898887244468542112899999999999999999999866889889999899995-----7------
Q ss_pred CCCCCHHHHHHHHHHCC-CCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH---CCEEEEEEEEEE
Q ss_conf 65578889999999628-7621257898308655246763158999999761132---143899999975
Q gi|254780582|r 150 GQPYSWYQMISLLREAN-FTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPG---FAGIYVIEARKI 215 (242)
Q Consensus 150 ~r~~~~~~l~~~l~~~g-f~~~~~~~~~~~pp~~~~~~~~~~~~~e~~~~~~~p~---~g~~~~i~a~K~ 215 (242)
=...++.+.|+.+. |+++... . + ... +...+|. .-|+|+..-+|+
T Consensus 380 ---ENe~~I~~FL~~~~d~~l~~~~----~-~--~~~-----------~~~~~P~~~~~DGFf~a~L~kk 428 (428)
T PRK10901 380 ---ENSQQIKAFLQRTPDAELCETG----T-P--EQP-----------GKQNLPGAEEGDGFFYAKLIKK 428 (428)
T ss_pred ---HHHHHHHHHHHHCCCCEECCCC----C-C--CCC-----------CEEECCCCCCCCCEEEEEEEEC
T ss_conf ---7899999999859997860677----8-8--999-----------8788999999873799999849
No 113
>PRK00107 gidB glucose-inhibited division protein B; Reviewed
Probab=97.33 E-value=0.0023 Score=39.24 Aligned_cols=127 Identities=8% Similarity=0.034 Sum_probs=75.3
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHH--CCCCEEEEEECHHHH----HHHHH--CCC-CCEEEECHHHCCCCCCCCCCH
Q ss_conf 975010489759996538811135531--238748873058999----83231--168-623653336567754720200
Q gi|254780582|r 29 STTWDDVTGCRLLGLGYAIPFFSCFHG--KVERTLAFMPAGQGA----TNWPD--QYF-SSTALVSEGNLPLADSSVDCV 99 (242)
Q Consensus 29 ~~~l~~~~g~~vLdiGcg~g~~~~~~~--~~~~~~~~~~~~~~~----~~~~~--~~~-~~~~~~d~~~LPf~~~sfD~V 99 (242)
.++++...+.+++|+|.|.|+...-++ .....+.+.++..-- ..... .-. ...+....|++. .+.+||+|
T Consensus 62 ~~~~~~~~~~~vlDiGSGaGfPGiplAI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~-~~~~fD~i 140 (216)
T PRK00107 62 LPYLQGEKPIRVLDVGSGAGFPGIPLAIARPDLQVTLVDSLGKKIAFLRQVAAELGLKNVTVVHGRAEEFG-QEEKFDVV 140 (216)
T ss_pred HHHCCCCCCCEEEECCCCCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCC-CCCCCCEE
T ss_conf 87337665877997079999426789997787729997387699999999999769998799863544046-56786689
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 2202477522999999999984699988999733877403456532766565578889999999628762125789
Q gi|254780582|r 100 LMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 100 i~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
++-- +.....+++-+...+++||.+++.=-.. .. -.......-++.+|+++......
T Consensus 141 tsRA----va~l~~l~~~~~~~l~~~g~~i~~KG~~----~~-----------~Ei~~a~~~~~~~~~~~~~~~~~ 197 (216)
T PRK00107 141 TSRA----VASLSDLVELCLPLLKPGGRFLALKGQD----PE-----------EEIAELPKAIKKLGGKVESVIEL 197 (216)
T ss_pred EEEH----HHCHHHHHHHHHHHCCCCCEEEEECCCC----HH-----------HHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 8605----4069999999997548897999987999----59-----------99999898999839759999999
No 114
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.33 E-value=0.002 Score=39.66 Aligned_cols=102 Identities=14% Similarity=0.115 Sum_probs=66.6
Q ss_pred CCCCCCCEEEEECCCCCH----HHHHHHCCCCEEEEEECHHHHHHHH---HCCCC-CE--EEECHHHC-CCCCCCCCCHH
Q ss_conf 010489759996538811----1355312387488730589998323---11686-23--65333656-77547202002
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPF----FSCFHGKVERTLAFMPAGQGATNWP---DQYFS-ST--ALVSEGNL-PLADSSVDCVL 100 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~--~~~d~~~L-Pf~~~sfD~Vi 100 (242)
++..+|.+|||+-++.|- +...+.+.+..++.+.+..-+.... ..... .. ...|...+ ....++||.|+
T Consensus 109 ~~p~pge~VLDlCAAPGGKtt~la~~m~~~G~lvAnd~~~~R~~~L~~n~~r~G~~n~~vt~~d~~~~~~~~~~~FD~IL 188 (471)
T PRK11933 109 ADDNAPQRVLDMAAAPGSKTTQIAALMNNQGALVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPEMFDAIL 188 (471)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHCCCCCCEEE
T ss_conf 48899998999577854899999997589966999838899999999999971998479993586674032301066799
Q ss_pred H----------------------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 2----------------------02477522999999999984699988999733
Q gi|254780582|r 101 M----------------------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 101 ~----------------------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
+ .++.+...-..++|.++++.|||||.|+-++=
T Consensus 189 vDaPCSG~G~~rk~p~~~~~w~~~~~~~~~~~Q~~iL~~A~~~LkpGG~LVYSTC 243 (471)
T PRK11933 189 LDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (471)
T ss_pred ECCCCCCCEEECCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECC
T ss_conf 8788888733555975764189879999999999999999987388968999817
No 115
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.32 E-value=0.0012 Score=40.84 Aligned_cols=124 Identities=15% Similarity=0.153 Sum_probs=76.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHCCC----------CCCCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHH
Q ss_conf 89999612889899999999999975010----------48975999653881113553123---874887305899983
Q gi|254780582|r 6 VELRQFYSSFLGKCTTDAISKVLSTTWDD----------VTGCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATN 72 (242)
Q Consensus 6 ~~l~~wY~s~~G~~~~~~~~~~l~~~l~~----------~~g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~ 72 (242)
.++.+=|....|+.+....+..++..+|+ .+-+-.|+||.|.|.-....+.. ...+++++-..++..
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~kv~LEIGFG~Ge~L~~~A~~nP~~~fIG~Evy~nGva~ 383 (503)
T PRK01544 304 INLNRSYARRIGKSLSGVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVAN 383 (503)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEEECHHHHHH
T ss_conf 21156999986054436788877515378773077774556708999536987999999996898888999406566999
Q ss_pred HH---HCCCC---CEEEECHHHC--CCCCCCCCCHHHHHHHHHHCCH-------------HHHHHHHHHHCCCCCEEEEE
Q ss_conf 23---11686---2365333656--7754720200220247752299-------------99999999846999889997
Q gi|254780582|r 73 WP---DQYFS---STALVSEGNL--PLADSSVDCVLMVHYLEFAEDP-------------FLMLHEIWRVLTSGGRMIVV 131 (242)
Q Consensus 73 ~~---~~~~~---~~~~~d~~~L--Pf~~~sfD~Vi~~h~LE~~~dp-------------~~~L~Ei~RvLkPgG~lii~ 131 (242)
.- ..... +....|...+ -++++|+|.|.... +|| ..+|..+.++|||||.+.+.
T Consensus 384 ll~~i~~~~l~Niri~~~D~~~ll~~lp~~sld~i~ilf-----PDPWpKkRH~KRRli~~efl~~l~~~Lk~~G~l~~a 458 (503)
T PRK01544 384 VLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILF-----PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 458 (503)
T ss_pred HHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCEEEEEC-----CCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999869975998733599999856620404167878-----999975532200177999999999971469889997
Q ss_pred ECC
Q ss_conf 338
Q gi|254780582|r 132 VPN 134 (242)
Q Consensus 132 ~~n 134 (242)
+-.
T Consensus 459 TD~ 461 (503)
T PRK01544 459 SDI 461 (503)
T ss_pred CCC
T ss_conf 678
No 116
>KOG1500 consensus
Probab=97.27 E-value=0.00098 Score=41.38 Aligned_cols=99 Identities=18% Similarity=0.193 Sum_probs=61.7
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHCC--CCEEEEEECHHHHHHHHHCCCC-------CEEEECHHHCCCCCCCCCCHHHH-
Q ss_conf 1048975999653881113553123--8748873058999832311686-------23653336567754720200220-
Q gi|254780582|r 33 DDVTGCRLLGLGYAIPFFSCFHGKV--ERTLAFMPAGQGATNWPDQYFS-------STALVSEGNLPLADSSVDCVLMV- 102 (242)
Q Consensus 33 ~~~~g~~vLdiGcg~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~~~~~d~~~LPf~~~sfD~Vi~~- 102 (242)
.+..|.-|||+|||+|.++.+...+ .++.+ ..++.++..++..-.. .++-+..|++.++ +..|++|+-
T Consensus 174 sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYA-vEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEP 251 (517)
T KOG1500 174 SDFQDKIVLDVGAGSGILSFFAAQAGAKKVYA-VEASEMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEP 251 (517)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCEEEE-EEHHHHHHHHHHHHHCCCCCCEEEECCCCCCEECCC-CCCCEEEECC
T ss_conf 34577489981588248999998738653898-745679999999874366320378705632010375-1034787256
Q ss_pred -HHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf -2477522999999999984699988999733
Q gi|254780582|r 103 -HYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 103 -h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
..+-+.+.--...-.++|.|+|.|+++=++-
T Consensus 252 MG~mL~NERMLEsYl~Ark~l~P~GkMfPT~g 283 (517)
T KOG1500 252 MGYMLVNERMLESYLHARKWLKPNGKMFPTVG 283 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 21411108889999999874287774467525
No 117
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=97.24 E-value=0.0023 Score=39.24 Aligned_cols=111 Identities=15% Similarity=0.111 Sum_probs=64.3
Q ss_pred EEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHC---CC-CCEEEECHHHCCCCCCCCCCHHHH-----HH--
Q ss_conf 59996538811135531238---748873058999832311---68-623653336567754720200220-----24--
Q gi|254780582|r 39 RLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQ---YF-SSTALVSEGNLPLADSSVDCVLMV-----HY-- 104 (242)
Q Consensus 39 ~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~-~~~~~~d~~~LPf~~~sfD~Vi~~-----h~-- 104 (242)
++||+|||+|.....+.... .+++.|.++.++..+..+ .. .+......+-+.--.+.||+||+. ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred CEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCEEEECCCCCCCCCC
T ss_conf 18996588319999999618988799998999999999999998289747987400333468885779968998888521
Q ss_pred ------HHH------------HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf ------775------------22999999999984699988999733877403456532766565578889999999628
Q gi|254780582|r 105 ------LEF------------AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREAN 166 (242)
Q Consensus 105 ------LE~------------~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~g 166 (242)
..| .+--..+++++.+.|+|||.+++-.-- -....+.+++...|
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~------------------~q~~~v~~~~~~~~ 254 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL------------------TQGEAVKALFEDTG 254 (280)
T ss_pred CCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC------------------CCHHHHHHHHHHCC
T ss_conf 137421358979987248777899999999899872868289999769------------------84899999999749
Q ss_pred C
Q ss_conf 7
Q gi|254780582|r 167 F 167 (242)
Q Consensus 167 f 167 (242)
+
T Consensus 255 ~ 255 (280)
T COG2890 255 F 255 (280)
T ss_pred C
T ss_conf 8
No 118
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.21 E-value=0.0011 Score=41.00 Aligned_cols=114 Identities=13% Similarity=0.171 Sum_probs=66.9
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHH-----------HHHCCCCCEEEECHHHCC
Q ss_conf 9999750104897599965388111355312----3874887305899983-----------231168623653336567
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATN-----------WPDQYFSSTALVSEGNLP 90 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~d~~~LP 90 (242)
..+....++..-+++||+|+|.|...-.+.. -...+.+. ++..+.+ .........+..|-..||
T Consensus 103 ~~L~~~~~dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile-~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp 181 (484)
T COG5459 103 DELQKRVPDFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILE-ASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP 181 (484)
T ss_pred HHHHHHCCCCCCCHHHCCCCCCCHHHHHHCCCCCCCHHHHHHC-CCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCC
T ss_conf 9999748886861020037787521233203378802212340-489999999999860453347777886502104788
Q ss_pred CCCCCCCCHHHHHHHHHHCCHH---HHHHHHHHHCCCCCEEEEEECCCCCCHHH
Q ss_conf 7547202002202477522999---99999998469998899973387740345
Q gi|254780582|r 91 LADSSVDCVLMVHYLEFAEDPF---LMLHEIWRVLTSGGRMIVVVPNKRGMWAR 141 (242)
Q Consensus 91 f~~~sfD~Vi~~h~LE~~~dp~---~~L~Ei~RvLkPgG~lii~~~n~~s~w~~ 141 (242)
. .++++++++.|-|-+..++. ..++..|..+.|||+|+|+.+--.--|.+
T Consensus 182 ~-ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~Gf~~ 234 (484)
T COG5459 182 A-ADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPAGFER 234 (484)
T ss_pred C-CCEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
T ss_conf 3-2236333435444435574318899999998606897499971798236999
No 119
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.20 E-value=0.003 Score=38.60 Aligned_cols=127 Identities=17% Similarity=0.133 Sum_probs=76.6
Q ss_pred HHHHHHCCHHHHHHHH------HH---HHHHHHHCCCC-CCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHH
Q ss_conf 9999612889899999------99---99999750104-897599965388111355312---38748873058999832
Q gi|254780582|r 7 ELRQFYSSFLGKCTTD------AI---SKVLSTTWDDV-TGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNW 73 (242)
Q Consensus 7 ~l~~wY~s~~G~~~~~------~~---~~~l~~~l~~~-~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~ 73 (242)
|=+.|+....|....+ .+ .......+... .-..++|+||..|.....+.. .....+++....++...
T Consensus 4 eQE~FWageFG~~Yi~RN~~~~~~~sn~~~f~~~l~~~~~ikSilE~GcNIGlNL~ALk~L~P~~~l~gIEIN~~A~~~l 83 (204)
T TIGR03587 4 EQEQFWAGEFGKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKA 83 (204)
T ss_pred HHHHHHHHHHCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHH
T ss_conf 47777503336687772773477888999999998357888826896688477699998748744049995399999999
Q ss_pred HHCCCCCE-EEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHH---HHHHHHHCCCCCEEEEEECCCC
Q ss_conf 31168623-653336567754720200220247752299999---9999984699988999733877
Q gi|254780582|r 74 PDQYFSST-ALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLM---LHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 74 ~~~~~~~~-~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~---L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
........ ..+...+ ++++.+||.|+...||-|+ +|..+ .+++.|+-+-= .++..-+||.
T Consensus 84 k~~~~~~~i~n~SIld-~~~~~~~DLv~t~GVLIHi-nP~~L~~vy~~l~~~s~ky-ili~EYynp~ 147 (204)
T TIGR03587 84 KAYLPNINIIQGSLFD-PFKDNFFDLVLTKGVLIHI-NPDNLPTAYRELYRCSNRY-ILIAEYYNPS 147 (204)
T ss_pred HHHCCCCEEEECCCCC-CCCCCCEEEEEEEEEEEEE-CHHHHHHHHHHHHHHHCCE-EEEEEECCCC
T ss_conf 8658972699653346-6778742389983089997-8899999999999852055-9999942899
No 120
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.16 E-value=0.0031 Score=38.55 Aligned_cols=96 Identities=11% Similarity=0.041 Sum_probs=57.8
Q ss_pred CCCEEEEECCCCCH----HHHHHHC--------CCCEEEEEECHHHHHHHHHCCCC-C----------------------
Q ss_conf 89759996538811----1355312--------38748873058999832311686-2----------------------
Q gi|254780582|r 36 TGCRLLGLGYAIPF----FSCFHGK--------VERTLAFMPAGQGATNWPDQYFS-S---------------------- 80 (242)
Q Consensus 36 ~g~~vLdiGcg~g~----~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~---------------------- 80 (242)
.--+|.-.||++|. +...+.+ ....++.|.+...+.++....-. .
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCCCCHHHHHHHEEECCCCC
T ss_conf 85399966768995589999999987332258743899997999999998628887667654499899963376469984
Q ss_pred -EE--------EECHHHC---CCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHCCCCCEEEEE
Q ss_conf -36--------5333656---7754720200220247752299--99999999846999889997
Q gi|254780582|r 81 -TA--------LVSEGNL---PLADSSVDCVLMVHYLEFAEDP--FLMLHEIWRVLTSGGRMIVV 131 (242)
Q Consensus 81 -~~--------~~d~~~L---Pf~~~sfD~Vi~~h~LE~~~dp--~~~L~Ei~RvLkPgG~lii~ 131 (242)
.+ .-...+| +...+-||+|+|-+||=+.+.+ ..+++.++..|+|||.|++-
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEECHHHHCCCEEEECCCCCCCCCCCCCCEEEECCEEEEECHHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 79876876243775357888754358988899841488637899999999999974899789982
No 121
>pfam12147 Hydrolase_5 Putative lysophospholipase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=97.11 E-value=0.013 Score=34.90 Aligned_cols=154 Identities=12% Similarity=-0.037 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCCH-HHHHHHCCC----CEEEEEECHHHHHHHHH------CCC-CCEEEEC-
Q ss_conf 9999999999975010489759996538811-135531238----74887305899983231------168-6236533-
Q gi|254780582|r 19 CTTDAISKVLSTTWDDVTGCRLLGLGYAIPF-FSCFHGKVE----RTLAFMPAGQGATNWPD------QYF-SSTALVS- 85 (242)
Q Consensus 19 ~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~-~~~~~~~~~----~~~~~~~~~~~~~~~~~------~~~-~~~~~~d- 85 (242)
.+.+++++.+.+.-.....-+||||-||.|- ....+.... ....-|.++.++..... ... .....+|
T Consensus 118 hl~~li~~ai~~l~~~g~~v~ilDIAaG~GRYvldal~~~~~~~~~illRDys~~NV~~G~~li~ergl~~ia~Fe~gdA 197 (311)
T pfam12147 118 HLEELLRYAIARLRASGRPVRILDIAAGHGRYVLDALAKAPQRPDSILLRDYSPLNVEQGRALIAERGLEDIARFEQGDA 197 (311)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCHHEEEEECCC
T ss_conf 99999999999999679956999851686162999998579887458851488877999999999749620006740576
Q ss_pred --HHHCCCCCCCCCCHHHHHHHHHHCCHH---HHHHHHHHHCCCCCEEEEEECCCCCCH----HHH----HHCCCCCCCC
Q ss_conf --365677547202002202477522999---999999984699988999733877403----456----5327665655
Q gi|254780582|r 86 --EGNLPLADSSVDCVLMVHYLEFAEDPF---LMLHEIWRVLTSGGRMIVVVPNKRGMW----ARM----EHTPFGSGQP 152 (242)
Q Consensus 86 --~~~LPf~~~sfD~Vi~~h~LE~~~dp~---~~L~Ei~RvLkPgG~lii~~~n~~s~w----~~~----~~~~~~~~r~ 152 (242)
.+++.--+-.-+.+|.+...|..+|-. ..|+-+.+++.|||.||-++= ||.+- ++. +....|--|.
T Consensus 198 Fd~~~la~l~p~P~l~IVSGLyELF~dN~lv~~sl~Gl~~ai~~gGyLIYTgQ-PWHPQLe~IAr~LtSHr~G~aWVMRr 276 (311)
T pfam12147 198 FDPASLAALTPAPTLAIVSGLYELFPDNDLVRRSLAGLAQAVEPGGYLIYTGQ-PWHPQLEMIARALTSHRGGEAWVMRR 276 (311)
T ss_pred CCHHHHHCCCCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCC-CCCHHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 79767632699997899701266368729999999999975089978998299-88667999999972566888676773
Q ss_pred CCHHHHHHHHHHCCCCCEEEE
Q ss_conf 788899999996287621257
Q gi|254780582|r 153 YSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 153 ~~~~~l~~~l~~~gf~~~~~~ 173 (242)
-|..++.+|.+.+||+-....
T Consensus 277 RsQ~EmD~Lv~~aGf~K~~q~ 297 (311)
T pfam12147 277 RSQAEMDELVEAAGFRKIAQR 297 (311)
T ss_pred CCHHHHHHHHHHCCCCHHHHE
T ss_conf 679999999998197215550
No 122
>KOG3178 consensus
Probab=97.07 E-value=0.015 Score=34.70 Aligned_cols=146 Identities=16% Similarity=0.088 Sum_probs=94.0
Q ss_pred HHCCCCCC----CEEEEECCCCCHHHH-HHHCCCCEEEEEECHHHHHHHHHCC-CC-CEEEECH-HHCCCCCCCCCCHHH
Q ss_conf 75010489----759996538811135-5312387488730589998323116-86-2365333-656775472020022
Q gi|254780582|r 30 TTWDDVTG----CRLLGLGYAIPFFSC-FHGKVERTLAFMPAGQGATNWPDQY-FS-STALVSE-GNLPLADSSVDCVLM 101 (242)
Q Consensus 30 ~~l~~~~g----~~vLdiGcg~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~d~-~~LPf~~~sfD~Vi~ 101 (242)
+.++...| ..++|+|.|.|-... .+....+.-++....+.+...+... .. ..+.+|. .+.|-. |+|++
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~----daI~m 242 (342)
T KOG3178 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKG----DAIWM 242 (342)
T ss_pred HHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHCCCCCEECCCCCCCCCCC----CEEEE
T ss_conf 64201026556766887587476999999975887725514789998522320678651236453458876----75998
Q ss_pred HHHHHHHCC--HHHHHHHHHHHCCCCCEEEEEECCCCC---------CHHHH----HHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 024775229--999999999846999889997338774---------03456----532766565578889999999628
Q gi|254780582|r 102 VHYLEFAED--PFLMLHEIWRVLTSGGRMIVVVPNKRG---------MWARM----EHTPFGSGQPYSWYQMISLLREAN 166 (242)
Q Consensus 102 ~h~LE~~~d--p~~~L~Ei~RvLkPgG~lii~~~n~~s---------~w~~~----~~~~~~~~r~~~~~~l~~~l~~~g 166 (242)
.=+|.|-.| -.++|+.++..|+|+|.+++.-..-.+ .+.+. ....-..+.-.+..+....+.++|
T Consensus 243 kWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~g 322 (342)
T KOG3178 243 KWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEG 322 (342)
T ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCEECCHHHHHHCCHHHC
T ss_conf 70005687688999999999858998889998356887777666432101046789998752560114999971146646
Q ss_pred CCCEEEEEEEEEC
Q ss_conf 7621257898308
Q gi|254780582|r 167 FTLSITSRSLFFP 179 (242)
Q Consensus 167 f~~~~~~~~~~~p 179 (242)
|.+.+.....|..
T Consensus 323 F~~~~~~~~~~~~ 335 (342)
T KOG3178 323 FPVCMVALTAYSY 335 (342)
T ss_pred CCEEEEEECCCCH
T ss_conf 8346897337745
No 123
>pfam01269 Fibrillarin Fibrillarin.
Probab=97.03 E-value=0.0029 Score=38.66 Aligned_cols=153 Identities=14% Similarity=0.078 Sum_probs=87.9
Q ss_pred HHHHH--HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHH---HHHH-HC
Q ss_conf 99996--128898999999999999750104897599965388111355312----38748873058999---8323-11
Q gi|254780582|r 7 ELRQF--YSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGA---TNWP-DQ 76 (242)
Q Consensus 7 ~l~~w--Y~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~---~~~~-~~ 76 (242)
|++.| |+|.++..+.. -+.. ++-.+|.+||-+|+++|-.-...++ .+.+++.+.++..+ .... ..
T Consensus 47 EyR~W~P~RSKLaAail~----g~~~-~~i~~gskVLYLGAasGTTVSHvsDIvg~~G~VyAVE~spr~~RdL~~la~~R 121 (229)
T pfam01269 47 EYRVWNPFRSKLAAAILK----GLDD-IPIKPGSKVLYLGAASGTTVSHVSDIVGPEGVVYAVEFSPRVGRELINVAKKR 121 (229)
T ss_pred EEEEECCCCCHHHHHHHC----CCCC-CCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCC
T ss_conf 788878870188999975----8755-68589987999447779857678872288953999971735578999997427
Q ss_pred CCCCEEEECHH---HCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCC
Q ss_conf 68623653336---567754720200220247752299999999998469998899973387740345653276656557
Q gi|254780582|r 77 YFSSTALVSEG---NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPY 153 (242)
Q Consensus 77 ~~~~~~~~d~~---~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~ 153 (242)
.....++.|+. ....--+.+|+|++=-. .-++-.-++..+..-|||||+++++.-.+.--+..-.. -
T Consensus 122 ~NIvPIl~DAr~P~~Y~~lv~~VD~ifqDva--Q~~Qa~i~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~--------~ 191 (229)
T pfam01269 122 PNIVPILEDARHPQKYRMLVEMVDVIFADVA--QPDQARILALNAKYFLKNGGYFMISIKARSIDVTKEPE--------E 191 (229)
T ss_pred CCCEEEECCCCCHHHHHHHCCCCCEEEECCC--CHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHH--------H
T ss_conf 9944576677875676542556668996278--77789999999998612698899999713421678989--------9
Q ss_pred CHHHHHHHHHHCCCCCEEEEE
Q ss_conf 888999999962876212578
Q gi|254780582|r 154 SWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 154 ~~~~l~~~l~~~gf~~~~~~~ 174 (242)
.-.+..+.|+..+|++.+.-.
T Consensus 192 vf~~e~~~L~~~~~~~~e~i~ 212 (229)
T pfam01269 192 VFAREVEKLKEEGFKPKEQVT 212 (229)
T ss_pred HHHHHHHHHHHCCCCEEEEEC
T ss_conf 999999999876996589980
No 124
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.03 E-value=0.0097 Score=35.72 Aligned_cols=131 Identities=13% Similarity=0.075 Sum_probs=87.5
Q ss_pred HHHHHCCHH--HHHH--HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH-HCC---CCEEEEEECHHHHHHHHHCCCC
Q ss_conf 999612889--8999--9999999997501048975999653881113553-123---8748873058999832311686
Q gi|254780582|r 8 LRQFYSSFL--GKCT--TDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH-GKV---ERTLAFMPAGQGATNWPDQYFS 79 (242)
Q Consensus 8 l~~wY~s~~--G~~~--~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~ 79 (242)
++.|-.+|. |..+ -....+.+.+.+....|..|||+|.|+|-+.... +.. .....+..+.+-+....+....
T Consensus 16 ~k~wi~~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~ 95 (194)
T COG3963 16 FKGWIDNPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPG 95 (194)
T ss_pred HHHHHCCCCEEEEECCCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHCCC
T ss_conf 99985097311135578579999998434844597647776986676899996579954368998277999999975887
Q ss_pred C-EEEECHHHCC-----CCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCC
Q ss_conf 2-3653336567-----7547202002202477522--99999999998469998899973387740
Q gi|254780582|r 80 S-TALVSEGNLP-----LADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGM 138 (242)
Q Consensus 80 ~-~~~~d~~~LP-----f~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~ 138 (242)
. .+.+|..++- +.+..||.|+|---+-..+ .-.+.|++..--|.+||.++-....|.|.
T Consensus 96 ~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s~ 162 (194)
T COG3963 96 VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLSP 162 (194)
T ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC
T ss_conf 5130540565787786527974016886560024867789999999998568997279998468881
No 125
>KOG3191 consensus
Probab=96.96 E-value=0.016 Score=34.53 Aligned_cols=64 Identities=17% Similarity=0.099 Sum_probs=35.3
Q ss_pred HHHHHHHCCHHHHH-HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCC----CEEEEEECHHHH
Q ss_conf 89999612889899-999999999975010489759996538811135531238----748873058999
Q gi|254780582|r 6 VELRQFYSSFLGKC-TTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVE----RTLAFMPAGQGA 70 (242)
Q Consensus 6 ~~l~~wY~s~~G~~-~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~----~~~~~~~~~~~~ 70 (242)
.++++||+-....+ +.+++...... +......-+||||||+|.-..++.... ..++.|.++.+.
T Consensus 13 ~~f~dVYEPaEDTFlLlDaLekd~~e-L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~ 81 (209)
T KOG3191 13 LDFSDVYEPAEDTFLLLDALEKDAAE-LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEAL 81 (209)
T ss_pred HHHHHCCCCCCHHHHHHHHHHHHHHH-HHHCCCEEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCHHHH
T ss_conf 66651347641053899999999999-8614860589934884659999997417771699954998999
No 126
>TIGR00091 TIGR00091 tRNA (guanine-N(7)-)-methyltransferase; InterPro: IPR004395 This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria . It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In Escherichia coli, this protein flanks the DNA repair protein MutY, also called micA.; GO: 0008168 methyltransferase activity.
Probab=96.92 E-value=0.0024 Score=39.21 Aligned_cols=158 Identities=16% Similarity=0.063 Sum_probs=86.5
Q ss_pred CCCEEEEECCCCCHHHHHHHCCC---CEEEEEE--------CHHHHHHHH------HCC--CCCEEEECHHHCC---CCC
Q ss_conf 89759996538811135531238---7488730--------589998323------116--8623653336567---754
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGKVE---RTLAFMP--------AGQGATNWP------DQY--FSSTALVSEGNLP---LAD 93 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~--------~~~~~~~~~------~~~--~~~~~~~d~~~LP---f~~ 93 (242)
...-+||||||.|.+...++..+ ..+|+.. ....+..+- ... ....+++|+..++ +++
T Consensus 19 ~~p~~~EIGcG~G~fl~~~A~~nP~~~flGIE~RvqvtnYv~~p~v~~a~~~~~~~g~~~~Nl~~L~~DA~~l~~~~~~~ 98 (216)
T TIGR00091 19 QKPLVLEIGCGKGRFLIKMAKQNPDKNFLGIEIRVQVTNYVETPIVLKAINKANKLGLKLRNLHVLCGDANELLEKFFPD 98 (216)
T ss_pred CCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHCC
T ss_conf 45448984168760268997727997277789998874102272899887557661784421352213602320454007
Q ss_pred C--CCCCHHHHHHHHHHCCH-------------HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHH
Q ss_conf 7--20200220247752299-------------99999999846999889997338774034565327665655788899
Q gi|254780582|r 94 S--SVDCVLMVHYLEFAEDP-------------FLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQM 158 (242)
Q Consensus 94 ~--sfD~Vi~~h~LE~~~dp-------------~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l 158 (242)
. ++..|.+.- +|| ..+|.+++++|++||.+.+.+-|.. |--.-|
T Consensus 99 ~PP~l~k~f~~F-----PDPW~KkRH~KRR~~~~~Fl~~~~~~L~~~G~i~~~TD~~~----------------lfE~mL 157 (216)
T TIGR00091 99 GPPSLSKVFLNF-----PDPWPKKRHNKRRITQPHFLKEVANVLKKGGVIELKTDNEP----------------LFEDML 157 (216)
T ss_pred CCCCEEEEEEEC-----CCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCHH----------------HHHHHH
T ss_conf 898045688877-----88951021022342567899999997045968999707846----------------789999
Q ss_pred HHHHHHC-CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE
Q ss_conf 9999962-8762125789830865524676315899999976113214389999997
Q gi|254780582|r 159 ISLLREA-NFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFAGIYVIEARK 214 (242)
Q Consensus 159 ~~~l~~~-gf~~~~~~~~~~~pp~~~~~~~~~~~~~e~~~~~~~p~~g~~~~i~a~K 214 (242)
..+.+.. .|...+...-+.--|.....+-+..+-+.....+..---.++|-..+.|
T Consensus 158 ~~l~~~~q~f~~~~~~~dl~~~~~~~~r~nkLkkD~Te~e~~~~~l~~~~~~~~~~~ 214 (216)
T TIGR00091 158 KVLSENDQLFVIISKNTDLNNSPLSRPRINKLKKDITEYEQRFLELGHPVFDLLFER 214 (216)
T ss_pred HHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEEE
T ss_conf 999653641245210022255776521035554117688888886089805887675
No 127
>TIGR00438 rrmJ ribosomal RNA large subunit methyltransferase J; InterPro: IPR004512 The ribosomal RNA large subunit methyltransferase J 2.1.1 from EC methylates the 23S rRNA. It specifically methylates the uridine in position 2552 of 23s rRNA in the 50S particle using S-adenosyl-L-methionine as a substrate. It was previously known as cell division protein ftsJ.; GO: 0016436 rRNA (uridine) methyltransferase activity, 0006364 rRNA processing.
Probab=96.89 E-value=0.0034 Score=38.30 Aligned_cols=97 Identities=20% Similarity=0.047 Sum_probs=63.3
Q ss_pred CCCEEEEECCCCCHHHHHH----HCCCCEEEEEECHHHHHHHHHCCCCCEEEECH----------HHCCCCCCCCCCHHH
Q ss_conf 8975999653881113553----12387488730589998323116862365333----------656775472020022
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFH----GKVERTLAFMPAGQGATNWPDQYFSSTALVSE----------GNLPLADSSVDCVLM 101 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----------~~LPf~~~sfD~Vi~ 101 (242)
.|..|||+||..|-.+... .+.+.++++|..+- .--...+...+.+|. +.+|=.+..+|+|++
T Consensus 32 ~G~~VlDLGAAPGGWsQva~~~~G~kG~ViA~Dl~~~---k~FP~~nv~fi~GDftdee~l~ki~~~~g~dekk~DVV~S 108 (192)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPM---KGFPIENVDFIRGDFTDEEVLNKILERVGDDEKKVDVVMS 108 (192)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEECCCC---CCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEEE
T ss_conf 7886786578987387788776068533899854557---8856466147544767878999999857898743778985
Q ss_pred H--------HHHHH---HCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 0--------24775---2299999999998469998899973387
Q gi|254780582|r 102 V--------HYLEF---AEDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 102 ~--------h~LE~---~~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
= -..+| ++=-..+|+=|.+||+++|-+++=+|--
T Consensus 109 DaaP~~SG~~~iDh~Rs~dLv~~aL~ia~~vL~~~GnfvvKvFqG 153 (192)
T TIGR00438 109 DAAPNISGIWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 153 (192)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 268887898754344379999999999999861589899998537
No 128
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.89 E-value=0.033 Score=32.67 Aligned_cols=62 Identities=15% Similarity=0.040 Sum_probs=40.2
Q ss_pred HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHH--HHHCCCCEEEEEECHHHHHHHHHC
Q ss_conf 12889899999999999975010489759996538811135--531238748873058999832311
Q gi|254780582|r 12 YSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSC--FHGKVERTLAFMPAGQGATNWPDQ 76 (242)
Q Consensus 12 Y~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 76 (242)
|.||..- +...+.... ...+..|..|+|+|||+|.+.. .+.....+.+++.++..+.....+
T Consensus 24 Y~Tp~~~-Aa~il~~a~--~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N 87 (198)
T COG2263 24 YRTPAPL-AAYILWVAY--LRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARAN 87 (198)
T ss_pred CCCCHHH-HHHHHHHHH--HCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
T ss_conf 4798489-999999998--738847888888278847889999862971799993698999999988
No 129
>pfam01189 Nol1_Nop2_Fmu NOL1/NOP2/sun family.
Probab=96.80 E-value=0.0083 Score=36.09 Aligned_cols=110 Identities=13% Similarity=0.055 Sum_probs=69.4
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHH----HHHHHCCCCEEEEEECHHHHHHHHHC---CCCC---EEEECHHHC-C-C
Q ss_conf 999999750104897599965388111----35531238748873058999832311---6862---365333656-7-7
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFF----SCFHGKVERTLAFMPAGQGATNWPDQ---YFSS---TALVSEGNL-P-L 91 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~d~~~L-P-f 91 (242)
-.......+...+|.+|||+-++.|.- ...+...+..++.|.+...+...... .... ....|..+. + .
T Consensus 72 aS~l~~~~L~p~~g~~VLD~CAaPGgKt~~la~l~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~~~~~~~d~~~~~~~~ 151 (277)
T pfam01189 72 SSQLDAIALNPQEDEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRNKQRLKRVYANIQRLGVFNIIVQEGDARQIDQKL 151 (277)
T ss_pred HHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCC
T ss_conf 67789997188999989883678881699999875898779983797899999999999759974799966444557434
Q ss_pred CCCCCCCHHH----------------------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 5472020022----------------------02477522999999999984699988999733
Q gi|254780582|r 92 ADSSVDCVLM----------------------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 92 ~~~sfD~Vi~----------------------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
.++.||.|++ ..+.++..-...+|+.+++.|+|||+|+-++=
T Consensus 152 ~~~~fD~vLvDaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lvYsTC 215 (277)
T pfam01189 152 LGGEFDRILLDAPCSGTGVIRRDPDIKWLRREADIAQLAELQKELLKAAWDLVKPGGVLVYSTC 215 (277)
T ss_pred CCCCCCEEEECCCCCCCCEECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 6666657997289889863455853121199999999999999999999997176998999949
No 130
>PTZ00146 fibrillarin; Provisional
Probab=96.77 E-value=0.004 Score=37.90 Aligned_cols=151 Identities=13% Similarity=0.139 Sum_probs=85.5
Q ss_pred HHHHHH--HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHH---HHHHHC
Q ss_conf 899996--128898999999999999750104897599965388111355312----38748873058999---832311
Q gi|254780582|r 6 VELRQF--YSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGA---TNWPDQ 76 (242)
Q Consensus 6 ~~l~~w--Y~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~ 76 (242)
.|++.| |+|.++..+.. -+. .++-.+|.+||-+|.++|-.-...++ ...+++.+.++... ......
T Consensus 108 iEYRvWnPfRSKLAAaIl~----Gl~-~i~Ik~GskVLYLGAasGTTVSHVSDIVG~~G~VYAVEfSpr~~RdLl~lA~~ 182 (296)
T PTZ00146 108 IEYRVWNPFRSKLAAAIYG----GVA-SIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLVEMAKR 182 (296)
T ss_pred EEEEEECCCCHHHHHHHHC----CCC-CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 7878647550188999976----964-44437999899851467986556665017886199997064668899999722
Q ss_pred CC-CCEEEECHH---HCCCCCCCCCCHHHHHHHHHHCCHHH---HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCC
Q ss_conf 68-623653336---56775472020022024775229999---999999846999889997338774034565327665
Q gi|254780582|r 77 YF-SSTALVSEG---NLPLADSSVDCVLMVHYLEFAEDPFL---MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149 (242)
Q Consensus 77 ~~-~~~~~~d~~---~LPf~~~sfD~Vi~~h~LE~~~dp~~---~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~ 149 (242)
.. ...++.|+. ....--+.+|+|++- +..|.+ ++..+..-||+||+++|+.-.+ |. +.+....
T Consensus 183 R~NIvPIleDAr~P~kYr~lV~~VDvIf~D-----VAQpdQarI~~~Na~~FLK~gG~~~i~IKAr-sI----Dst~~p~ 252 (296)
T PTZ00146 183 RTNIVPIIEDARYPQKYRMLVPMVDCIFAD-----VAQPDQARIVALNAQHFLKNGGHFVISIKAN-CI----DSTADPE 252 (296)
T ss_pred CCCCEEEECCCCCHHHHHHHCCCCCEEEEC-----CCCHHHHHHHHHHHHHHHHCCCEEEEEEECC-CC----CCCCCHH
T ss_conf 798335777789746755424555589961-----7876589999999998531698899999726-63----2567989
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6557888999999962876212578
Q gi|254780582|r 150 GQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 150 ~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
-.-.+-.+.|++.+|++.+...
T Consensus 253 ---~VF~~Ev~kL~~~~f~~~e~v~ 274 (296)
T PTZ00146 253 ---VVFASEVQKLKKEGLKPKEQLT 274 (296)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEEE
T ss_conf ---9999999999872896368870
No 131
>TIGR00755 ksgA dimethyladenosine transferase; InterPro: IPR011530 This family of proteins represent the rRNA adenine dimethylases (e.g. KsgA). The bacterial enzyme KsgA catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In yeast, and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB .; GO: 0016433 rRNA (adenine) methyltransferase activity, 0006364 rRNA processing.
Probab=96.77 E-value=0.0032 Score=38.42 Aligned_cols=85 Identities=8% Similarity=-0.028 Sum_probs=60.0
Q ss_pred CCHHHHHHH--HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHH-HHCCCC-EEEEEECHHHHHHHHHCCC----CCE--E
Q ss_conf 288989999--99999999750104897599965388111355-312387-4887305899983231168----623--6
Q gi|254780582|r 13 SSFLGKCTT--DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCF-HGKVER-TLAFMPAGQGATNWPDQYF----SST--A 82 (242)
Q Consensus 13 ~s~~G~~~~--~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~----~~~--~ 82 (242)
...+||.+. ..+.+.+-+.+....+..|||||+|.|.+... +..... .+++..+...+........ ... +
T Consensus 4 ~K~lGQnFL~D~~~~~~Iv~~~~~~~~~~vlEIGPG~G~LT~~Ll~~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~~~~i 83 (277)
T TIGR00755 4 RKSLGQNFLIDESVIQKIVEAANVLENDVVLEIGPGLGALTEPLLKRAKKLVTAIEIDPRLAEILRKLLSEKLYENLEVI 83 (277)
T ss_pred CCCCCCCEEECHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHCCCCCCCCEEEE
T ss_conf 64227602408789999999743789977999738820789999982598489997267899998752154332425787
Q ss_pred EECHHHCCCC-CCCCC
Q ss_conf 5333656775-47202
Q gi|254780582|r 83 LVSEGNLPLA-DSSVD 97 (242)
Q Consensus 83 ~~d~~~LPf~-~~sfD 97 (242)
.+|.-..+++ ...|+
T Consensus 84 ~~Dalk~~~~~~~~~~ 99 (277)
T TIGR00755 84 EGDALKVDLNSLEDFP 99 (277)
T ss_pred ECCEEEECCCHHHHCC
T ss_conf 1444541232043316
No 132
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=96.69 E-value=0.019 Score=34.06 Aligned_cols=97 Identities=21% Similarity=0.110 Sum_probs=60.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHC--------CCCCCCCCCHHHH
Q ss_conf 4897599965388111355312----387488730589998323116862365333656--------7754720200220
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQYFSSTALVSEGNL--------PLADSSVDCVLMV 102 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L--------Pf~~~sfD~Vi~~ 102 (242)
.+|.+|||+||..|-+.....+ .+.++++|..+-. .......+.+|..+- -+....||+|++=
T Consensus 50 ~~~~~VlDLGaAPG~WsQva~~~~~~~g~VigVDl~~~~-----pi~gv~~i~gDi~~~~~~~~i~~~~~~~~~DvVlSD 124 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMD-----PIVGVDFLQGDFRDELVLKALLERVGDSKVDVVMSD 124 (209)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCCCC-----CCCCCEEECCCCCCHHHHHHHHHHHCCCCCCEEECC
T ss_conf 789989980689975789999973999739998653045-----378967640344588999999998589873089666
Q ss_pred H--------HHHHHC---CHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 2--------477522---999999999984699988999733877
Q gi|254780582|r 103 H--------YLEFAE---DPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 103 h--------~LE~~~---dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
. .++|.. =-..+|.=+.++|+|||.+++=+|.-.
T Consensus 125 mAPn~tG~~~~D~~~s~~L~~~al~~a~~~Lk~gG~fv~K~F~G~ 169 (209)
T PRK11188 125 MAPNMSGTPAVDIPRAMYLVELALDMCRQVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 665667870335999999999999999986267988999996487
No 133
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU; InterPro: IPR014088 Members of this protein family include S-adenosylmethionine-dependent C-20 methyltransferase (BchU), part of the pathway of bacteriochlorophyll c production in photosynthetic green sulphur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produce bacteriochlorophyll d..
Probab=96.69 E-value=0.012 Score=35.08 Aligned_cols=132 Identities=18% Similarity=0.149 Sum_probs=84.0
Q ss_pred CCEEEEECCCCCHHHHHHHCCCCEE--EE--EECH-----HHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 9759996538811135531238748--87--3058-----9998323116862365333656775472020022024775
Q gi|254780582|r 37 GCRLLGLGYAIPFFSCFHGKVERTL--AF--MPAG-----QGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEF 107 (242)
Q Consensus 37 g~~vLdiGcg~g~~~~~~~~~~~~~--~~--~~~~-----~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~ 107 (242)
-+++.|+|.|.|..+..+.+.+... ++ .|+. +++...--...-..+..|...=|+++. |.|+.+-.|--
T Consensus 150 V~~lIDVGGGIGDI~AAl~~~FP~L~~T~~NLP~A~DLV~EN~A~KG~ADR~~~~A~D~Y~E~YP~~--DAVLF~RILY~ 227 (306)
T TIGR02716 150 VKKLIDVGGGIGDIAAALLKAFPELDVTLLNLPSALDLVRENVAEKGLADRIRGVAVDIYKESYPEA--DAVLFSRILYS 227 (306)
T ss_pred CCEEEECCCCHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC--HHHHHHHHHHH
T ss_conf 3254333888778999999737752323120540556776655414510046631565033875771--16567788764
Q ss_pred HCCHHH--HHHHHHHHCCCCCEEEEE-----EC---CCCCCH--HHHHHCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 229999--999999846999889997-----33---877403--4565327665655788899999996287621
Q gi|254780582|r 108 AEDPFL--MLHEIWRVLTSGGRMIVV-----VP---NKRGMW--ARMEHTPFGSGQPYSWYQMISLLREANFTLS 170 (242)
Q Consensus 108 ~~dp~~--~L~Ei~RvLkPgG~lii~-----~~---n~~s~w--~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~ 170 (242)
....-. .++.++..|+.|||++|. -| |...+- =..-..+|.-..|-...+..+.|++.||+-.
T Consensus 228 ~N~Ql~T~l~~KAyDAl~SGGR~LILDMVI~DP~~PNyDYL~HY~~~~GM~FSVL~FK~~A~Y~~~L~~~Gy~DV 302 (306)
T TIGR02716 228 ANEQLSTILLKKAYDALRSGGRLLILDMVIDDPENPNYDYLSHYLLAIGMGFSVLEFKDQAVYKDLLRSLGYKDV 302 (306)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHCCCCEE
T ss_conf 467899999998875225788078654343185677714689999871666101211002300799985597201
No 134
>KOG1661 consensus
Probab=96.59 E-value=0.0047 Score=37.51 Aligned_cols=103 Identities=12% Similarity=0.086 Sum_probs=62.3
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH-----CCCCEEEEEECHH-------HHHHHHH---------CCCCCE
Q ss_conf 999999975010489759996538811135531-----2387488730589-------9983231---------168623
Q gi|254780582|r 23 AISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG-----KVERTLAFMPAGQ-------GATNWPD---------QYFSST 81 (242)
Q Consensus 23 ~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~-----~~~~~~~~~~~~~-------~~~~~~~---------~~~~~~ 81 (242)
...+.|+.. ..+|...|++|.|+||+..... ......+++--++ .+..+.. ......
T Consensus 71 ~~le~L~~~--L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661 71 TALEYLDDH--LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHH--HCCCCCEEECCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCEEE
T ss_conf 999999986--234731013378740899999999457776651444159999999987776504730455641486479
Q ss_pred EEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 6533365677547202002202477522999999999984699988999733
Q gi|254780582|r 82 ALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 82 ~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
+++|....--+.+.+|.|.+= ....+..++.-.-|+|||++++-+-
T Consensus 149 vvGDgr~g~~e~a~YDaIhvG------Aaa~~~pq~l~dqL~~gGrllip~~ 194 (237)
T KOG1661 149 VVGDGRKGYAEQAPYDAIHVG------AAASELPQELLDQLKPGGRLLIPVG 194 (237)
T ss_pred EECCCCCCCCCCCCCCEEEEC------CCCCCCHHHHHHHHCCCCEEEEEEC
T ss_conf 967762347756876657876------6762247999986343872898611
No 135
>pfam01728 FtsJ FtsJ-like methyltransferase. This family consists of FtsJ from various bacterial and archaeal sources FtsJ is a methyltransferase, but actually has no effect on cell division. FtsJ's substrate is the 23S rRNA. The 1.5 A crystal structure of FtsJ in complex with its cofactor S-adenosylmethionine revealed that FtsJ has a methyltransferase fold. This family also includes the N terminus of flaviviral NS5 protein. It has been hypothesized that the N-terminal domain of NS5 is a methyltransferase involved in viral RNA capping.
Probab=96.50 E-value=0.014 Score=34.86 Aligned_cols=95 Identities=21% Similarity=0.022 Sum_probs=54.6
Q ss_pred CCCCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHCCCCCEEEECHHHC-------CCCCCCCCCHHHHHH
Q ss_conf 48975999653881113553123---87488730589998323116862365333656-------775472020022024
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQYFSSTALVSEGNL-------PLADSSVDCVLMVHY 104 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L-------Pf~~~sfD~Vi~~h~ 104 (242)
..+..+||+||++|.+....... ..++++|..+. ........+.+|..+. -+..+.+|+|++=..
T Consensus 20 ~~~~~vlDLg~aPGgwsq~~~~~~~~~~v~~vDl~~~-----~~~~~~~~i~gDi~~~~~~~~i~~~~~~~~DlV~sD~a 94 (176)
T pfam01728 20 PGGKTVLDLGAAPGGFSQVLLERGAKGRVVAVDLGPM-----KPIQGVTFLRGDITDPETLEKLLELLPGKVDLVLCDGA 94 (176)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCC-----CCCCCCEEECCCCCCHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 7999999968999769999998566873999973446-----56778456516766878999999973998468973366
Q ss_pred H-----------HHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 7-----------75229999999999846999889997338
Q gi|254780582|r 105 L-----------EFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 105 L-----------E~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
- ...+--...+.=+.++|++||.+++-++.
T Consensus 95 ~~~~g~~~~d~~~s~~L~~~~l~~a~~~L~~gG~fv~K~f~ 135 (176)
T pfam01728 95 PNVSGLENTDSFISLRLVLAALLLALEVLRPGGNFVVKLFK 135 (176)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEE
T ss_conf 56567733478999999999999999982437639999982
No 136
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.50 E-value=0.019 Score=34.02 Aligned_cols=129 Identities=16% Similarity=0.175 Sum_probs=73.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH----HHHHHCCCCEEEEEECHHHHHHHH----HC
Q ss_conf 8899996128898999999999999750104897599965388111----355312387488730589998323----11
Q gi|254780582|r 5 IVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFF----SCFHGKVERTLAFMPAGQGATNWP----DQ 76 (242)
Q Consensus 5 i~~l~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~ 76 (242)
|.++.++|-|.--..+.+.....|.+.++ .+..++|+|||...- ...+......+.+|.|...+.... ..
T Consensus 34 It~lpEYY~tr~E~~IL~~~~~~Ia~~~~--~~~~lIElGsG~~~Kt~~LL~al~~~~~Y~plDIS~~~L~~s~~~l~~~ 111 (301)
T TIGR03438 34 ICELPEYYPTRTEAAILERHADEIAAATG--AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD 111 (301)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 97798668716899999988999998627--6764773178862378999998621563887756899999999999977
Q ss_pred CCC---CEEEECHH---HCCCCCCCCCCHHHHH--HHHHH--CCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 686---23653336---5677547202002202--47752--299999999998469998899973387
Q gi|254780582|r 77 YFS---STALVSEG---NLPLADSSVDCVLMVH--YLEFA--EDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 77 ~~~---~~~~~d~~---~LPf~~~sfD~Vi~~h--~LE~~--~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
.+. ..+++|.+ .+|-....-..+++.- ++=-. ++-.++|+.+.+.|.|||.++|.+--.
T Consensus 112 ~p~l~v~~v~~dy~~~l~~~~~~~~~~rl~~flGSsIGNf~~~ea~~fL~~~~~~l~~~d~lLiG~Dl~ 180 (301)
T TIGR03438 112 YPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGVDLV 180 (301)
T ss_pred CCCCEEEEEEECHHCHHHCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 899768999633315744566557887589970754478998999999999999719998489940445
No 137
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.49 E-value=0.027 Score=33.15 Aligned_cols=148 Identities=16% Similarity=0.073 Sum_probs=84.5
Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHCC----CCEEEEEECHHH--------HHHHH---HCCCCC-EEEECHHHCCC
Q ss_conf 997501048975999653881113553123----874887305899--------98323---116862-36533365677
Q gi|254780582|r 28 LSTTWDDVTGCRLLGLGYAIPFFSCFHGKV----ERTLAFMPAGQG--------ATNWP---DQYFSS-TALVSEGNLPL 91 (242)
Q Consensus 28 l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~----~~~~~~~~~~~~--------~~~~~---~~~~~~-~~~~d~~~LPf 91 (242)
+-.++...+|.+|.|+=-|.|++...++.. +.+.+..|+... -.... ....+. .+-...-.++
T Consensus 40 ~L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~- 118 (238)
T COG4798 40 VLAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG- 118 (238)
T ss_pred EEEEECCCCCCEEEEEECCCCCHHHHHCHHCCCCEEEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC-
T ss_conf 2677526899879998348850744411002875059885643432510140366666664222310455277500458-
Q ss_pred CCCCCCCHHH-------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHH
Q ss_conf 5472020022-------024775229999999999846999889997338774034565327665655788899999996
Q gi|254780582|r 92 ADSSVDCVLM-------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLRE 164 (242)
Q Consensus 92 ~~~sfD~Vi~-------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~ 164 (242)
+.+..|.+.. +.-.-|-..-.++.++++++|||||.+++.---..---+..+. .........-+..-...
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt---~~~~ri~~a~V~a~vea 195 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDT---ITLHRIDPAVVIAEVEA 195 (238)
T ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHH---HHHCCCCHHHHHHHHHH
T ss_conf 997654133211110011045685249999999998538884799874024689880022---44336575899999985
Q ss_pred CCCCCEEEEEEEEEC
Q ss_conf 287621257898308
Q gi|254780582|r 165 ANFTLSITSRSLFFP 179 (242)
Q Consensus 165 ~gf~~~~~~~~~~~p 179 (242)
+||..+.-+..+-.|
T Consensus 196 aGFkl~aeS~ilaNp 210 (238)
T COG4798 196 AGFKLEAESEILANP 210 (238)
T ss_pred HCCEEECEEHHHCCC
T ss_conf 132551111200688
No 138
>PRK04266 fibrillarin; Provisional
Probab=96.48 E-value=0.0083 Score=36.10 Aligned_cols=150 Identities=17% Similarity=0.115 Sum_probs=89.4
Q ss_pred HHHHHH--HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHH---HH-HC
Q ss_conf 899996--128898999999999999750104897599965388111355312---3874887305899983---23-11
Q gi|254780582|r 6 VELRQF--YSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATN---WP-DQ 76 (242)
Q Consensus 6 ~~l~~w--Y~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~---~~-~~ 76 (242)
.|++.| |+|.++..+.. -+. .++-.+|.+||-+|+++|-.-...++ .+.+++.+.|+..+.. .. ..
T Consensus 45 ~EyR~W~P~RSKLaAail~----g~~-~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R 119 (226)
T PRK04266 45 EEYREWNPRRSKLAAAILN----GLK-NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEER 119 (226)
T ss_pred EEEEEECCCCCHHHHHHHC----CCC-CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC
T ss_conf 4866578872199999976----975-56758998799954777984888987517964999982707789999998508
Q ss_pred CCCCEEEECH---HHC-CCCCCCCCCHHHHHHHHHHCCHHH---HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCC
Q ss_conf 6862365333---656-775472020022024775229999---999999846999889997338774034565327665
Q gi|254780582|r 77 YFSSTALVSE---GNL-PLADSSVDCVLMVHYLEFAEDPFL---MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149 (242)
Q Consensus 77 ~~~~~~~~d~---~~L-Pf~~~sfD~Vi~~h~LE~~~dp~~---~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~ 149 (242)
.....++.|+ +.. ++- +.+|+|++= +..|.+ ++..+..-|++||+++++.-...=-+..-..
T Consensus 120 ~NivPIl~DAr~P~~Y~~~v-~~VD~i~qD-----vAQ~dQa~I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~----- 188 (226)
T PRK04266 120 KNIIPILGDARKPEEYAHLV-EKVDVIYQD-----VAQPNQAEIAADNADIFLKPGGYLMLAIKARSIDVTKDPK----- 188 (226)
T ss_pred CCCEEEECCCCCHHHHHHHC-CCCCEEEEE-----CCCHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHH-----
T ss_conf 99625754678845644205-656589960-----6774289999999998601598899999742356468989-----
Q ss_pred CCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 6557888999999962876212578
Q gi|254780582|r 150 GQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 150 ~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
-.-.+..+.|++.+|++.+.-.
T Consensus 189 ---~vf~~~~~~L~~~~~~~~e~i~ 210 (226)
T PRK04266 189 ---EIFKEEIKKLEEGGFEILEVVD 210 (226)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEEE
T ss_conf ---9999999999876996689981
No 139
>KOG3201 consensus
Probab=96.42 E-value=0.0015 Score=40.41 Aligned_cols=126 Identities=16% Similarity=0.225 Sum_probs=73.8
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHH-HCC--CCEEEEEEC-HHHH---HHHHHCC--CCCEEE------ECHHHCCCCCCC
Q ss_conf 501048975999653881113553-123--874887305-8999---8323116--862365------333656775472
Q gi|254780582|r 31 TWDDVTGCRLLGLGYAIPFFSCFH-GKV--ERTLAFMPA-GQGA---TNWPDQY--FSSTAL------VSEGNLPLADSS 95 (242)
Q Consensus 31 ~l~~~~g~~vLdiGcg~g~~~~~~-~~~--~~~~~~~~~-~~~~---~~~~~~~--~~~~~~------~d~~~LPf~~~s 95 (242)
.-....|.+||++|.|.--++..+ +.. ...+-+.+. ...+ .+....+ .+.+-+ ....+...+...
T Consensus 24 ~~n~~rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~t 103 (201)
T KOG3201 24 DPNKIRGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHT 103 (201)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHEEEECCCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHCC
T ss_conf 60677678898726744655455204535873588716978999979999851200256500034787764488875170
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 02002202477522999999999984699988999733877403456532766565578889999999628762125
Q gi|254780582|r 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSIT 172 (242)
Q Consensus 96 fD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~ 172 (242)
||.|++..++=|.+.-..+.+-|++.|+|.|+.++.-|-+. -|..+..+.....||.++..
T Consensus 104 FDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fsPRRg----------------~sL~kF~de~~~~gf~v~l~ 164 (201)
T KOG3201 104 FDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFSPRRG----------------QSLQKFLDEVGTVGFTVCLE 164 (201)
T ss_pred CCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCC----------------CHHHHHHHHHHHCEEEEEEC
T ss_conf 22798601025889999999999998584666167667555----------------56999999987540699953
No 140
>PRK09329 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.39 E-value=0.011 Score=35.46 Aligned_cols=118 Identities=9% Similarity=-0.012 Sum_probs=64.8
Q ss_pred HHCCCCC-CCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHHCCCC-----CEEEECHHHCCCCCCCCCCHH
Q ss_conf 7501048-97599965388111355312---38748873058999832311686-----236533365677547202002
Q gi|254780582|r 30 TTWDDVT-GCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPDQYFS-----STALVSEGNLPLADSSVDCVL 100 (242)
Q Consensus 30 ~~l~~~~-g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~d~~~LPf~~~sfD~Vi 100 (242)
.++.... ...+||+|||+|-....+.. ....++.|.+..++..+..+... ..+.+|..+ |+ +..||+|+
T Consensus 102 ~~~~~~~~~~~~lDlGtGSG~I~isla~~~p~~~v~avDiS~~Al~~A~~Na~~~~~~v~~~~~dl~~-~~-~~~~DlIv 179 (285)
T PRK09329 102 GYLQSHKEIQTFYDVCCGSGCIGLAIKKHCPHVHVVLSDICPQALAVAKSNAKSNGLDVDFLLGDLFA-PF-SRPADAFV 179 (285)
T ss_pred HHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCEEEHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHH-HH-CCCCCEEE
T ss_conf 99861877777888454179999999985898658803376999999999999729947999763003-33-47678899
Q ss_pred HH--------------HHHHHHCCHHH--------------HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCC
Q ss_conf 20--------------24775229999--------------999999846999889997338774034565327665655
Q gi|254780582|r 101 MV--------------HYLEFAEDPFL--------------MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQP 152 (242)
Q Consensus 101 ~~--------------h~LE~~~dp~~--------------~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~ 152 (242)
+. +|.+| +|+. ++.++.+.|+|||.+++-.-.-
T Consensus 180 SNPPYI~~~e~~~l~~eV~~~--EP~~AL~gg~dGl~~~r~i~~~a~~~L~~~G~l~~Eig~~----------------- 240 (285)
T PRK09329 180 CNPPYLSFKEFFHVDPEVRCH--EPWKALVGGSSGLEFYQRIAQELPKILVPGGVGWLEIGSS----------------- 240 (285)
T ss_pred ECCCCCCHHHHHHCCHHHHHC--CCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCH-----------------
T ss_conf 899988844454498755436--7099884797389999999999999600498899996854-----------------
Q ss_pred CCHHHHHHHHHHCCCCC
Q ss_conf 78889999999628762
Q gi|254780582|r 153 YSWYQMISLLREANFTL 169 (242)
Q Consensus 153 ~~~~~l~~~l~~~gf~~ 169 (242)
-...+.++++..||..
T Consensus 241 -Q~~~v~~l~~~~g~~~ 256 (285)
T PRK09329 241 -QGESVKKIFAKHGISG 256 (285)
T ss_pred -HHHHHHHHHHHCCCCC
T ss_conf -8999999999669964
No 141
>PRK00536 speE spermidine synthase; Provisional
Probab=96.34 E-value=0.016 Score=34.54 Aligned_cols=100 Identities=13% Similarity=0.004 Sum_probs=57.1
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCCCEEEEEECHHHHHHHHHC--------CCCCEEEECHHHCCCCCCCCCCHHHHH
Q ss_conf 010489759996538811135531238748873058999832311--------686236533365677547202002202
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQ--------YFSSTALVSEGNLPLADSSVDCVLMVH 103 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~LPf~~~sfD~Vi~~h 103 (242)
+.+..-++||-||.|.|...+...+....+.+..--..+....+. .....+..-.+...-..++||+||.-
T Consensus 68 ~~Hp~Pk~VLIIGGGDGG~~REvlKH~~~v~~VEID~~Vv~~sk~ylP~~~~~~~dpr~~~~~~~~~~~~~~fDvIIvD- 146 (262)
T PRK00536 68 CTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIICL- 146 (262)
T ss_pred HCCCCCCEEEEECCCCHHHHHHHHCCCCEEEEEEECHHHHHHHHHHCHHHHHHHCCCCEEHHHHHHHHCCCCCCEEEEC-
T ss_conf 2189978799986875599999872897669999678999999997856565413996113999876154766889988-
Q ss_pred HHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 477522999999999984699988999733877
Q gi|254780582|r 104 YLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 104 ~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
+-+|....+.+.|.|+|||.++.-.-+|+
T Consensus 147 ----sl~~~~~~~~l~~~L~~~Gi~v~Q~esp~ 175 (262)
T PRK00536 147 ----QEPDIHKIDGLKRMLKEDGVFISVAKHPL 175 (262)
T ss_pred ----CCCCCCHHHHHHHHHCCCCEEEECCCCHH
T ss_conf ----99980549999998589989998389712
No 142
>PRK04457 spermidine synthase; Provisional
Probab=96.28 E-value=0.057 Score=31.34 Aligned_cols=110 Identities=13% Similarity=0.021 Sum_probs=62.3
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHH--C-----CCCCEEEECH-HHCCCCC
Q ss_conf 999997501048975999653881113553123---874887305899983231--1-----6862365333-6567754
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPD--Q-----YFSSTALVSE-GNLPLAD 93 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~d~-~~LPf~~ 93 (242)
+..+..++-.-...+||.||-|.|-+..+..+. ....+++.+++-+...+. . .....+++|+ +.+.-.+
T Consensus 55 r~Mm~~LLf~p~Pk~vl~iGLGgGsl~k~~~~~~P~~~i~~VEIdp~Vi~vAr~~F~lP~dd~Rl~V~~~Dg~~fv~~~~ 134 (262)
T PRK04457 55 RAMMGFLLFNPRPQHILQIGLGGGSFAKFIDTYLPDTRQTAVEINPQVIAVARNHFELPFEDEKFEIIEADGAEYIKVFP 134 (262)
T ss_pred HHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHCC
T ss_conf 99999986589978699992570199999998398675899987889999999865799999726999553899985486
Q ss_pred CCCCCHHHHH----HHHHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 7202002202----4775229999999999846999889997338
Q gi|254780582|r 94 SSVDCVLMVH----YLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 94 ~sfD~Vi~~h----~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
+++|+|++=- ..--.-....+++++.+.|+|+|.+++-.+.
T Consensus 135 ~~~DvI~vD~fd~~g~~~~L~t~~Fy~~c~~~L~~~Gvlv~Nl~~ 179 (262)
T PRK04457 135 ASTDVILVDGFDGEQIVDALVTQPFFRDCRNALSSDGVFVTNLWS 179 (262)
T ss_pred CCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 777889996889888860008299999999864989399998688
No 143
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.21 E-value=0.05 Score=31.64 Aligned_cols=168 Identities=15% Similarity=0.075 Sum_probs=89.8
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHH----HHHHHCCCC-EEEEEECHHHHHHHH---HCCCC---CEEEECHHHCC---
Q ss_conf 99999750104897599965388111----355312387-488730589998323---11686---23653336567---
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFF----SCFHGKVER-TLAFMPAGQGATNWP---DQYFS---STALVSEGNLP--- 90 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~----~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~---~~~~~d~~~LP--- 90 (242)
.......+...+|.+|||+=++.|.- ..++.+... +++.|.+..-+.... ...+. ..+..|...++
T Consensus 145 S~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~ 224 (355)
T COG0144 145 SQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL 224 (355)
T ss_pred HHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC
T ss_conf 76679971999979688807999769999999668998769974498789999999999719983489951330143113
Q ss_pred CCCCCCCCHHH----------------------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCC
Q ss_conf 75472020022----------------------02477522999999999984699988999733877403456532766
Q gi|254780582|r 91 LADSSVDCVLM----------------------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFG 148 (242)
Q Consensus 91 f~~~sfD~Vi~----------------------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~ 148 (242)
...+.||.|++ ....+...-..++|+.+.+.|||||.|+-++=.-...
T Consensus 225 ~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~e---------- 294 (355)
T COG0144 225 PGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPE---------- 294 (355)
T ss_pred CCCCCCCEEEECCCCCCCEEECCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH----------
T ss_conf 4557778599879998771133581232038999999999999999999998448798899990237500----------
Q ss_pred CCCCCCHHHHHHHHHHC-CCCCEEEEEE--EEECCCCCHHHHHHHHHHHHHHHHHHHHC---CEEEEEEEEEE
Q ss_conf 56557888999999962-8762125789--83086552467631589999997611321---43899999975
Q gi|254780582|r 149 SGQPYSWYQMISLLREA-NFTLSITSRS--LFFPPTHKKCILKLWSVFEKIGNIFGPGF---AGIYVIEARKI 215 (242)
Q Consensus 149 ~~r~~~~~~l~~~l~~~-gf~~~~~~~~--~~~pp~~~~~~~~~~~~~e~~~~~~~p~~---g~~~~i~a~K~ 215 (242)
=....+...|+.. +|+.+..... .+.+... ....-+.+++|.. .|+|+-..+|.
T Consensus 295 ----ENE~vV~~~L~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~r~~p~~~~~dGFFia~l~k~ 354 (355)
T COG0144 295 ----ENEEVVERFLERHPDFELEPVRLPWGPLFEGLG---------SELGKTRRLYPHVHGTDGFFIAKLRKK 354 (355)
T ss_pred ----CCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCC---------CCCCCEEEECCCCCCCCCEEEEEEEEC
T ss_conf ----288999999985899544114455444444445---------455661786787789786799999967
No 144
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.16 E-value=0.1 Score=29.93 Aligned_cols=174 Identities=13% Similarity=0.002 Sum_probs=105.7
Q ss_pred HHHHHHHHCCHHHHHH--HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH---CCCCEEEEEECHHHHHHHHHCC--
Q ss_conf 8899996128898999--99999999975010489759996538811135531---2387488730589998323116--
Q gi|254780582|r 5 IVELRQFYSSFLGKCT--TDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG---KVERTLAFMPAGQGATNWPDQY-- 77 (242)
Q Consensus 5 i~~l~~wY~s~~G~~~--~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 77 (242)
..++++|-+..+|+.- .+.++++|-..+.-....+||.+|++++.+.-... ..+.+..++.++..........
T Consensus 459 ~~~~~~w~~r~~~~~~~~l~~~~~rl~~~~~~qr~~~vl~l~~~sll~~~~~l~~~peggv~~~~~~~~~~~rL~aQl~l 538 (726)
T PRK13341 459 DPELERWLQRQLGQEGERLRILRDRLWSGITWQRHDRVLNLANRSLLWALEPLRAVPEGGVTVLCESSDDIVRLEAQLDL 538 (726)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 65789999998731437999999998433665634359983385126526778618998669983788899999999874
Q ss_pred ---CCC-E-EEE---CHHHCCCCCCCCCCHHHHHHHHHHCCHH--HHHHHHHHHCCCCCEEEEEECCCCCCHHHHH----
Q ss_conf ---862-3-653---3365677547202002202477522999--9999999846999889997338774034565----
Q gi|254780582|r 78 ---FSS-T-ALV---SEGNLPLADSSVDCVLMVHYLEFAEDPF--LMLHEIWRVLTSGGRMIVVVPNKRGMWARME---- 143 (242)
Q Consensus 78 ---~~~-~-~~~---d~~~LPf~~~sfD~Vi~~h~LE~~~dp~--~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~---- 143 (242)
-.+ . +.+ +...+ -++..||.|+--+++....+.. .+++.+...+.|+|.+.+....|----....
T Consensus 539 LdpL~RP~Ll~~~~~~l~~L-~~~~~FE~IgGR~~~~~l~~~~~~~~~q~L~~~l~p~g~l~Ll~S~P~~Gpa~all~~~ 617 (726)
T PRK13341 539 LDPLGRPVLLDAGLLALKYL-PANLQFEWIGGRNGLDDLLYKADEELWQQLTEKLTPNGGLRLLISQPEAGPALALLLKA 617 (726)
T ss_pred CCHHCCCCEEECCCHHHHHC-CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHCCC
T ss_conf 68111971121671146537-98764247833320023422569999999998659986699863577648078873569
Q ss_pred ------------HCCCCCCCCCCHHHHHHHHHHCCCCCEE--EEEEEEEC
Q ss_conf ------------3276656557888999999962876212--57898308
Q gi|254780582|r 144 ------------HTPFGSGQPYSWYQMISLLREANFTLSI--TSRSLFFP 179 (242)
Q Consensus 144 ------------~~~~~~~r~~~~~~l~~~l~~~gf~~~~--~~~~~~~p 179 (242)
..--|....-.+..|...|+.+|+.+.. +......+
T Consensus 618 ~~~~~~l~~L~~aEe~wl~~~~~~~~Lqq~le~~gwsl~~e~W~e~lsL~ 667 (726)
T PRK13341 618 PVEDKLLSALLEAEELWLKSQSMPALLQQQLEEAGWSLGIEEWTEELSLG 667 (726)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEHHCCCCCC
T ss_conf 40489999999999999626888599999999748845351300156787
No 145
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.16 E-value=0.03 Score=32.91 Aligned_cols=136 Identities=12% Similarity=-0.010 Sum_probs=77.1
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH--CCCCEEEEEECHHHHHHHHHCCC--------CCEEEECH-HHCCC
Q ss_conf 999999975010489759996538811135531--23874887305899983231168--------62365333-65677
Q gi|254780582|r 23 AISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG--KVERTLAFMPAGQGATNWPDQYF--------SSTALVSE-GNLPL 91 (242)
Q Consensus 23 ~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~-~~LPf 91 (242)
..++.+.... .|+++|++=|-||-++-... .+..++++|.|...+....++.. ...+++|. +.|.-
T Consensus 207 ~~R~~l~~~~---~GkrvLNlFsYTGgfsv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~ 283 (393)
T COG1092 207 DNRRALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRK 283 (393)
T ss_pred HHHHHHHHHC---CCCEEEEECCCCCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHH
T ss_conf 9999986131---6876788646676999999866997148982657899999999986299710105672239999999
Q ss_pred C---CCCCCCHHHH---------HHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 5---4720200220---------247752299999999998469998899973387740345653276656557888999
Q gi|254780582|r 92 A---DSSVDCVLMV---------HYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMI 159 (242)
Q Consensus 92 ~---~~sfD~Vi~~---------h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~ 159 (242)
. .+.||+||+= ....-..|-..++..+.++|+|||.++++.=...- ....-...+.
T Consensus 284 ~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~lL~pgG~l~~~s~~~~~------------~~~~f~~~i~ 351 (393)
T COG1092 284 AERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF------------SSDLFLEIIA 351 (393)
T ss_pred HHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCC------------CHHHHHHHHH
T ss_conf 9855995568997881003582100538989999999999970799689999367766------------9899999999
Q ss_pred HHHHHCCCCCEEEE
Q ss_conf 99996287621257
Q gi|254780582|r 160 SLLREANFTLSITS 173 (242)
Q Consensus 160 ~~l~~~gf~~~~~~ 173 (242)
+-+...+.......
T Consensus 352 ~a~~~~~~~~~~~~ 365 (393)
T COG1092 352 RAAAAAGRRAQEIE 365 (393)
T ss_pred HHHHHCCCCEEEEE
T ss_conf 99986487579961
No 146
>PRK00811 spermidine synthase; Provisional
Probab=96.13 E-value=0.019 Score=34.06 Aligned_cols=128 Identities=13% Similarity=0.003 Sum_probs=68.0
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHH-----------CCCCCEEEECHH-HCCCCCCCC
Q ss_conf 010489759996538811135531238---74887305899983231-----------168623653336-567754720
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPD-----------QYFSSTALVSEG-NLPLADSSV 96 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~~d~~-~LPf~~~sf 96 (242)
+.....++||-+|.|.|.......+.. .+...+.+..-+..... ......+..|+. -+.-.+++|
T Consensus 74 ~~h~~pk~VLIiGGGDGg~~rE~lkh~~v~~v~~VeiD~~Vi~~~~~~lp~~~~~~~~dprv~~~~~Dg~~fv~~~~~~y 153 (283)
T PRK00811 74 LAHPNPKKVLIIGGGDGGTLREVLKHPSVEKITMVEIDERVVEMSRKYLPEISGGAWDDPRVELVIGDGVKFVRETENSF 153 (283)
T ss_pred HHCCCCCEEEEECCCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHCCCCC
T ss_conf 73899774899568747999998427885679999468999999999838863133029715998278999998452355
Q ss_pred CCHHHHHHHHHHCCH---------HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 200220247752299---------99999999846999889997338774034565327665655788899999996287
Q gi|254780582|r 97 DCVLMVHYLEFAEDP---------FLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANF 167 (242)
Q Consensus 97 D~Vi~~h~LE~~~dp---------~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf 167 (242)
|+||+=- .|| ..+.+.+.+.|+|+|.++.-.-+|+.- .+ .-.++.+-++.. |
T Consensus 154 DvII~D~-----tDP~gpa~~Lft~~Fy~~~~~~L~~~Gi~v~Q~~sp~~~---~~----------~~~~~~~~l~~~-F 214 (283)
T PRK00811 154 DVIIVDS-----TDPVGPAEGLFTKEFYENCKRALKEGGIFVAQSESPFLQ---AD----------EIKDLHKKLREV-F 214 (283)
T ss_pred CEEEEEC-----CCCCCHHHHHCCHHHHHHHHHHCCCCCEEEECCCCHHHC---HH----------HHHHHHHHHHHH-C
T ss_conf 4899808-----998864455345999999998539995899927983206---99----------999999999986-8
Q ss_pred CCEEEEEEEEEC
Q ss_conf 621257898308
Q gi|254780582|r 168 TLSITSRSLFFP 179 (242)
Q Consensus 168 ~~~~~~~~~~~p 179 (242)
..... +..+.|
T Consensus 215 ~~v~~-y~~~vP 225 (283)
T PRK00811 215 PIVRP-YQAAVP 225 (283)
T ss_pred CCEEE-EEEECC
T ss_conf 86689-999555
No 147
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=95.99 E-value=0.12 Score=29.45 Aligned_cols=98 Identities=8% Similarity=0.014 Sum_probs=58.5
Q ss_pred HHHCCCCCCCEEEEECCCCCHHHHHHH--CCCCEEEEEECHHH-------HHHHHHCCCCCEEEECHHHCCCCCCCCCCH
Q ss_conf 975010489759996538811135531--23874887305899-------983231168623653336567754720200
Q gi|254780582|r 29 STTWDDVTGCRLLGLGYAIPFFSCFHG--KVERTLAFMPAGQG-------ATNWPDQYFSSTALVSEGNLPLADSSVDCV 99 (242)
Q Consensus 29 ~~~l~~~~g~~vLdiGcg~g~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~d~~~LPf~~~sfD~V 99 (242)
.++++. .+.+++|+|.|.|+...-++ .....+.+.++..- +...-.......+....|++.. ..+||+|
T Consensus 42 ~~~~~~-~~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~nv~v~~~R~E~~~~-~~~~D~v 119 (184)
T pfam02527 42 LEYLDN-IRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQH-EEQYDVI 119 (184)
T ss_pred HHHCCC-CCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCC-CCCCCEE
T ss_conf 774266-79868834798884679999967785599992828999999999998599976999560441464-4678789
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 220247752299999999998469998899973
Q gi|254780582|r 100 LMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 100 i~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
++-- +.....+++-+...++++|++++.=
T Consensus 120 ~aRA----~a~l~~ll~~~~~~l~~~g~~i~~K 148 (184)
T pfam02527 120 TSRA----VASLNELTEWALPLLKPGGYFLAYK 148 (184)
T ss_pred EECH----HCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9810----0579999999998638898999988
No 148
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=95.93 E-value=0.066 Score=30.95 Aligned_cols=98 Identities=13% Similarity=0.040 Sum_probs=45.9
Q ss_pred CCCCEEEEECCCCCHHHHHHH--CCCCEEEEEECHHHHHHHHHC--------CCCCEEEECHHHC-CCCCCCCCCHHH--
Q ss_conf 489759996538811135531--238748873058999832311--------6862365333656-775472020022--
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHG--KVERTLAFMPAGQGATNWPDQ--------YFSSTALVSEGNL-PLADSSVDCVLM-- 101 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~d~~~L-Pf~~~sfD~Vi~-- 101 (242)
..|++.|-+=|-||-.+-... .+...++.|.|...+....++ .....+++|.-++ .-..+.||+|++
T Consensus 551 a~gk~fLNLF~YTgt~sv~Aa~gGA~~t~sVD~S~tyl~Wa~~N~~lN~~~~~~h~~v~aD~~~wl~~~~~~fDli~~DP 630 (716)
T PRK11783 551 AKGKRFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRFIQADCLAWLKEAREQFDLIFIDP 630 (716)
T ss_pred HCCCCEEEEEECCCCEEHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHCCCCCCEEEECC
T ss_conf 07884643122256102133527961227862708799999999985499963473896408999985777667899889
Q ss_pred ---------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf ---------0247752299999999998469998899973
Q gi|254780582|r 102 ---------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 102 ---------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
..+++.-.|...+|+-+-+.|+|||.|+++.
T Consensus 631 PtFSnSk~m~~~~dvqrDh~~li~~~~~~L~~~G~l~FS~ 670 (716)
T PRK11783 631 PTFSNSKRMEDSFDVQRDHVALIKLAMRLLRPGGTLYFSN 670 (716)
T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 9998766678863220309999999998608996899962
No 149
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=95.91 E-value=0.059 Score=31.25 Aligned_cols=132 Identities=11% Similarity=-0.007 Sum_probs=87.8
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCC-C-EEEEEECHHHHHHHH---HCCC----CCEEEECHHHCCCC
Q ss_conf 9999999975010489759996538811135531238-7-488730589998323---1168----62365333656775
Q gi|254780582|r 22 DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVE-R-TLAFMPAGQGATNWP---DQYF----SSTALVSEGNLPLA 92 (242)
Q Consensus 22 ~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~-~-~~~~~~~~~~~~~~~---~~~~----~~~~~~d~~~LPf~ 92 (242)
..|+.++.+.... |.+|||.=+|.|+++.-.+..+ . +++++..+.+..... ..+. ...+++|..+.+.+
T Consensus 176 ~~ER~Rva~~v~~--GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~ 253 (341)
T COG2520 176 STERARVAELVKE--GETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE 253 (341)
T ss_pred HHHHHHHHHHHCC--CCEEEECCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHC
T ss_conf 4789999863069--98899835786540124665478639999459899999999998557655156796648885020
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 472020022024775229999999999846999889997338774034565327665655788899999996287621
Q gi|254780582|r 93 DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLS 170 (242)
Q Consensus 93 ~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~ 170 (242)
-..+|.|++.+. .+.+.++..+-+.+++||.+..-.+-+-..- . .....++.+.....|++++
T Consensus 254 ~~~aDrIim~~p----~~a~~fl~~A~~~~k~~g~iHyy~~~~e~~~-------~----~~~~~~i~~~~~~~~~~~~ 316 (341)
T COG2520 254 LGVADRIIMGLP----KSAHEFLPLALELLKDGGIIHYYEFVPEDDI-------E----ERPEKRIKSAARKGGYKVE 316 (341)
T ss_pred CCCCCEEEECCC----CCCHHHHHHHHHHHHCCCEEEEEECCCHHHC-------C----CCHHHHHHHHHHHCCCCCE
T ss_conf 466788983898----7202338999998514867999962243411-------1----1259999998764367632
No 150
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.90 E-value=0.083 Score=30.38 Aligned_cols=96 Identities=10% Similarity=-0.090 Sum_probs=56.5
Q ss_pred CEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHC----------CCCCEEEECHHHC-CCCCCCCCCHHHHH
Q ss_conf 759996538811135531238---748873058999832311----------6862365333656-77547202002202
Q gi|254780582|r 38 CRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQ----------YFSSTALVSEGNL-PLADSSVDCVLMVH 103 (242)
Q Consensus 38 ~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~----------~~~~~~~~d~~~L-Pf~~~sfD~Vi~~h 103 (242)
.+||.||-|.|.......+.. +.+..+.+++-+...+.- .....+..|.-+. .-..++||+|++=-
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEECC
T ss_conf 76999889766999999836884337999708899999998666754335797368996107999874887677899858
Q ss_pred HHHHHCCH------HHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 47752299------999999998469998899973387
Q gi|254780582|r 104 YLEFAEDP------FLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 104 ~LE~~~dp------~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
+ +.+ -| ..+.+.+.|.|+|+|.++.-.-++
T Consensus 158 t-dp~-gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~ 193 (282)
T COG0421 158 T-DPV-GPAEALFTEEFYEGCRRALKEDGIFVAQAGSP 193 (282)
T ss_pred C-CCC-CCCCCCCCHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 8-998-84302377999999998628896899944784
No 151
>KOG2915 consensus
Probab=95.77 E-value=0.037 Score=32.37 Aligned_cols=98 Identities=12% Similarity=0.134 Sum_probs=66.8
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHH----HHHCCCCC--EE-EECH--HHCCC
Q ss_conf 99999750104897599965388111355312----3874887305899983----23116862--36-5333--65677
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATN----WPDQYFSS--TA-LVSE--GNLPL 91 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~~--~~-~~d~--~~LPf 91 (242)
...|..+++-.+|.+|++-|.|+|-++.++++ .++.+.++...+.+.+ ++...... ++ .-|. .-.+.
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCC
T ss_conf 99999986579997898637886348899998637676269998328789999999997377863489996415677353
Q ss_pred CCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCE
Q ss_conf 547202002202477522999999999984699988
Q gi|254780582|r 92 ADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGR 127 (242)
Q Consensus 92 ~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~ 127 (242)
.+..+|.|++- ++.|..++-.++.+||.+|.
T Consensus 174 ks~~aDaVFLD-----lPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915 174 KSLKADAVFLD-----LPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred CCCCCCEEEEC-----CCCHHHHHHHHHHHHHHCCC
T ss_conf 13423569975-----89805522336777540682
No 152
>PRK11524 putative methyltransferase; Provisional
Probab=95.70 E-value=0.013 Score=35.01 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=22.6
Q ss_pred HHHCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 752299999999998469998899973387
Q gi|254780582|r 106 EFAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 106 E~~~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
++.+--..+++|+.|||+|+|.+++.....
T Consensus 54 ~y~~~~~~~l~e~~RvLk~~Gsi~i~~~~~ 83 (284)
T PRK11524 54 LFIDWLYEVIDECHRVLKKQGTMYIMNSTE 83 (284)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 999999999999999834057459962855
No 153
>KOG0820 consensus
Probab=95.64 E-value=0.052 Score=31.56 Aligned_cols=89 Identities=7% Similarity=-0.063 Sum_probs=57.8
Q ss_pred HHCCHHHHHHHH--HHHHHHHHHCCCCCCCEEEEECCCCCHHHH-HHHCCCCEEEEEECHHHHHHHHHCCCC-------C
Q ss_conf 612889899999--999999975010489759996538811135-531238748873058999832311686-------2
Q gi|254780582|r 11 FYSSFLGKCTTD--AISKVLSTTWDDVTGCRLLGLGYAIPFFSC-FHGKVERTLAFMPAGQGATNWPDQYFS-------S 80 (242)
Q Consensus 11 wY~s~~G~~~~~--~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 80 (242)
.+++..||++.+ .+.+.|.+-.+..++..|||+|-|+|.+.. .+..+..++++..++.++....+...+ .
T Consensus 31 kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLq 110 (315)
T KOG0820 31 KFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQ 110 (315)
T ss_pred CCCCCCCHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHCCCCCCCEEE
T ss_conf 65543014555477889999860478998779995798778999999720848999408078999999866998656046
Q ss_pred EEEECHHHCCCCCCCCCCHHH
Q ss_conf 365333656775472020022
Q gi|254780582|r 81 TALVSEGNLPLADSSVDCVLM 101 (242)
Q Consensus 81 ~~~~d~~~LPf~~~sfD~Vi~ 101 (242)
.+.+|.- ..+.-.||.+|.
T Consensus 111 V~~gD~l--K~d~P~fd~cVs 129 (315)
T KOG0820 111 VLHGDFL--KTDLPRFDGCVS 129 (315)
T ss_pred EEECCCC--CCCCCCCCEEEC
T ss_conf 8850312--578851031122
No 154
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=95.63 E-value=0.053 Score=31.48 Aligned_cols=87 Identities=10% Similarity=0.019 Sum_probs=54.7
Q ss_pred CHHHHHHH--HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH-HCCCCEEEEEECHHHHHHHHHCCC----CCEEEECH
Q ss_conf 88989999--999999997501048975999653881113553-123874887305899983231168----62365333
Q gi|254780582|r 14 SFLGKCTT--DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH-GKVERTLAFMPAGQGATNWPDQYF----SSTALVSE 86 (242)
Q Consensus 14 s~~G~~~~--~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~ 86 (242)
..+||.+. ..+.+.+.+......+.+|||||+|.|-+...+ .....++++..+...+........ ...+.+|.
T Consensus 6 K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~Da 85 (259)
T COG0030 6 KRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDA 85 (259)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCCCCCEEEEECCH
T ss_conf 77664541478799999985578999869997898778899999606957999968899999997506566559994724
Q ss_pred HHCCCCCC-CCCCHH
Q ss_conf 65677547-202002
Q gi|254780582|r 87 GNLPLADS-SVDCVL 100 (242)
Q Consensus 87 ~~LPf~~~-sfD~Vi 100 (242)
-...|++. .++.|+
T Consensus 86 Lk~d~~~l~~~~~vV 100 (259)
T COG0030 86 LKFDFPSLAQPYKVV 100 (259)
T ss_pred HCCCCHHHCCCCEEE
T ss_conf 247513515788899
No 155
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.63 E-value=0.0073 Score=36.40 Aligned_cols=98 Identities=8% Similarity=0.017 Sum_probs=60.0
Q ss_pred CCCEEEEECCCCCH----HHHHHHC-------CCCEEEEEECHHHHHHHHHCCC-------------------------C
Q ss_conf 89759996538811----1355312-------3874887305899983231168-------------------------6
Q gi|254780582|r 36 TGCRLLGLGYAIPF----FSCFHGK-------VERTLAFMPAGQGATNWPDQYF-------------------------S 79 (242)
Q Consensus 36 ~g~~vLdiGcg~g~----~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-------------------------~ 79 (242)
...+|.-.||.+|. ++..+.+ ....++.|.+...+..++...- .
T Consensus 115 ~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~~g 194 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCCCC
T ss_conf 97589976778872399999999997323777707999979888999998089888998459999995116415787666
Q ss_pred CE-E--------EECHHHC---CCC-CCCCCCHHHHHHHHHHCCH--HHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 23-6--------5333656---775-4720200220247752299--9999999984699988999733
Q gi|254780582|r 80 ST-A--------LVSEGNL---PLA-DSSVDCVLMVHYLEFAEDP--FLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 80 ~~-~--------~~d~~~L---Pf~-~~sfD~Vi~~h~LE~~~dp--~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
.. + .-...+| +++ .+.||+|+|-+||=+.+++ ..+++.+++.|+|||.|++.--
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfCRNVlIYFd~~~q~~vl~~~~~~L~pgG~L~lG~s 263 (287)
T PRK10611 195 LVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFCRNVMIYFDKTTQQEILRRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred EEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 187457876307771400679988888995199978405367899999999999998689928998388
No 156
>pfam02384 N6_Mtase N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.
Probab=95.62 E-value=0.073 Score=30.72 Aligned_cols=133 Identities=17% Similarity=0.080 Sum_probs=74.3
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC----------CCCEEEEEECHHHHHHHH-----H---CCCCCEEE
Q ss_conf 99999999750104897599965388111355312----------387488730589998323-----1---16862365
Q gi|254780582|r 22 DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK----------VERTLAFMPAGQGATNWP-----D---QYFSSTAL 83 (242)
Q Consensus 22 ~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~----------~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~ 83 (242)
+.+.+.+.+++....|.+|+|--||+|.+...... ....++.+..+....-.. + ........
T Consensus 32 r~Vv~lmv~ll~p~~~~~V~DPacGtGgfLi~a~~~i~~~~~~~~~~~i~G~E~~~~~~~la~mNm~lhgi~~~~~~i~~ 111 (312)
T pfam02384 32 REVSKLIVELLEPKPGESIYDPACGSGGFLIQADKFVKSHDGDTNDISIYGQELNPTTYRLARMNMILHGIEYNDFGIRH 111 (312)
T ss_pred HHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89999999982899999882168773378999999999843785565563688998999999999998479887455214
Q ss_pred ECHHHCCC--CCCCCCCHHHHHHHH--------HHCC--------------HHHHHHHHHHHCCCCCEEEEEECCCCCCH
Q ss_conf 33365677--547202002202477--------5229--------------99999999984699988999733877403
Q gi|254780582|r 84 VSEGNLPL--ADSSVDCVLMVHYLE--------FAED--------------PFLMLHEIWRVLTSGGRMIVVVPNKRGMW 139 (242)
Q Consensus 84 ~d~~~LPf--~~~sfD~Vi~~h~LE--------~~~d--------------p~~~L~Ei~RvLkPgG~lii~~~n~~s~w 139 (242)
+|.-.-|. .+..||+|++.=-.- ...| .-.++..+-..|++||+..+++|+-. +.
T Consensus 112 gdsl~~~~~~~~~kfD~IlsNPPFg~k~~~~~~~~~~~~~~~~~~~~~~~~e~~Fiqh~l~~Lk~~GraaiVlp~g~-Lf 190 (312)
T pfam02384 112 GDTLLSPKFEEDKKFDVVVANPPFNQKWDANDNLENDPRFRAYGVPPKSNADFAFLQHIIYHLSPNGRAAVVLPNGV-LF 190 (312)
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CC
T ss_conf 77655767665455118983786466766543210272110368788874429999999985699976999955823-10
Q ss_pred HHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 456532766565578889999999628
Q gi|254780582|r 140 ARMEHTPFGSGQPYSWYQMISLLREAN 166 (242)
Q Consensus 140 ~~~~~~~~~~~r~~~~~~l~~~l~~~g 166 (242)
+. . ....++++|-+.+
T Consensus 191 ---~~------~--~e~~iR~~lle~~ 206 (312)
T pfam02384 191 ---RG------G--AEGDIRKALVEKD 206 (312)
T ss_pred ---CC------C--HHHHHHHHHHHCC
T ss_conf ---46------5--0889999999759
No 157
>pfam03141 DUF248 Putative methyltransferase. Members of this family of hypothetical plant proteins are probably methyltransferases: several of the aligned sequences either match the methyltransferase profile, or contain a SAM-binding motif. A protein from Arabidopsis thaliana contains both. Several family members are described as ankyrin like.
Probab=95.58 E-value=0.054 Score=31.44 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=59.1
Q ss_pred CCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHCCC---CCEEEECH----HHCCCCCCCCCCHHHHH
Q ss_conf 0104897599965388111355312-3874887305899983231168---62365333----65677547202002202
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQYF---SSTALVSE----GNLPLADSSVDCVLMVH 103 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~----~~LPf~~~sfD~Vi~~h 103 (242)
+....-.+|+|.-++.|.|...+.+ .-.+.-..|... ....+ .+-+.+-. |..+--.-++|.+=+.|
T Consensus 361 i~~~~~RNVMDMnA~~GGFAAAL~~~~vWVMNVVP~~~-----~nTL~vIydRGLiG~yHDWCE~FsTYPRTYDLlHA~~ 435 (506)
T pfam03141 361 IDKGRVRNVMDMNAGFGGFAAALIDDPVWVMNVVPVDS-----PDTLPVIYDRGLIGIYHDWCEPFSTYPRTYDLLHADH 435 (506)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHCCCCEEEEEECCCCC-----CCCCCEEEECCCCCEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 55676012221244421588986379804998355899-----9875458754421010022455788885077773532
Q ss_pred HHHHHC---CHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 477522---9999999999846999889997
Q gi|254780582|r 104 YLEFAE---DPFLMLHEIWRVLTSGGRMIVV 131 (242)
Q Consensus 104 ~LE~~~---dp~~~L~Ei~RvLkPgG~lii~ 131 (242)
++-+.. +-..+|-|+.|+|+|+|.+||-
T Consensus 436 lfS~~~~rC~~~dillEMDRILRP~G~vIiR 466 (506)
T pfam03141 436 LFSLYKKRCNLEDILLEMDRILRPGGAVIIR 466 (506)
T ss_pred HHHHHCCCCCHHHHHHHHHHHCCCCCEEEEE
T ss_conf 3477617865899998887600688149994
No 158
>KOG3420 consensus
Probab=95.56 E-value=0.019 Score=34.05 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH--HCCCCEEEEEECHHHHHHHHHC
Q ss_conf 99999999997501048975999653881113553--1238748873058999832311
Q gi|254780582|r 20 TTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH--GKVERTLAFMPAGQGATNWPDQ 76 (242)
Q Consensus 20 ~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 76 (242)
++...-..+..-..+..|..++|+|||.|.++... .....++++|..+..+.....+
T Consensus 32 iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rN 90 (185)
T KOG3420 32 IAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRN 90 (185)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHC
T ss_conf 99999999986201204746225247611567775057873378640588999998616
No 159
>PRK00274 ksgA dimethyladenosine transferase; Reviewed
Probab=95.48 E-value=0.041 Score=32.12 Aligned_cols=80 Identities=14% Similarity=0.020 Sum_probs=52.5
Q ss_pred CHHHHHHH--HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCC
Q ss_conf 88989999--9999999975010489759996538811135531-23874887305899983231168623653336567
Q gi|254780582|r 14 SFLGKCTT--DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP 90 (242)
Q Consensus 14 s~~G~~~~--~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LP 90 (242)
..+||.+. ..+.+.+.+......+..|+|||.|.|.+...+. .....++++.+...............+.+|.-..+
T Consensus 15 K~lGQnFL~d~~ii~kIv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~ii~~D~L~~~ 94 (267)
T PRK00274 15 KSLGQNFLIDENIIDKIVRAADLQPGDRVLEIGPGLGALTEPLLERAAKVTAIEIDRDLAPILRETDNLTIIEGDALKVD 94 (267)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHCCCEEEEECHHHHCC
T ss_conf 77782214898999999996089999907996388888999999626805886368899999850478699965066478
Q ss_pred CCC
Q ss_conf 754
Q gi|254780582|r 91 LAD 93 (242)
Q Consensus 91 f~~ 93 (242)
+.+
T Consensus 95 ~~~ 97 (267)
T PRK00274 95 LEE 97 (267)
T ss_pred HHH
T ss_conf 677
No 160
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.43 E-value=0.14 Score=29.08 Aligned_cols=95 Identities=21% Similarity=0.050 Sum_probs=54.8
Q ss_pred CCCEEEEECCCCCHHHHHHHC----CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCC--------CCCCCCCCHHHHH
Q ss_conf 897599965388111355312----3874887305899983231168623653336567--------7547202002202
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGK----VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP--------LADSSVDCVLMVH 103 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LP--------f~~~sfD~Vi~~h 103 (242)
.|+.|+|+|+..|-.+...++ ...++++|..+-. .......+++|..+-+ +....+|+|++=.
T Consensus 45 ~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~-----~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ 119 (205)
T COG0293 45 PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----PIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDM 119 (205)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCC-----CCCCCEEEEEECCCCCHHHHHHHHCCCCCCCEEEECC
T ss_conf 89879983879984999999973888848999775455-----6789468841324843799999870778766687258
Q ss_pred --------HHHHH---CCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf --------47752---299999999998469998899973387
Q gi|254780582|r 104 --------YLEFA---EDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 104 --------~LE~~---~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
..+|. .--..++.-+.++|+|||.+++-+|--
T Consensus 120 ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg 162 (205)
T COG0293 120 APNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQG 162 (205)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEEEEC
T ss_conf 8776787220088999999999999987257898399999757
No 161
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=95.43 E-value=0.034 Score=32.58 Aligned_cols=68 Identities=10% Similarity=-0.016 Sum_probs=42.1
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHCCC----CCEEEECHHHCCCCC
Q ss_conf 9999750104897599965388111355312-3874887305899983231168----623653336567754
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQYF----SSTALVSEGNLPLAD 93 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~d~~~LPf~~ 93 (242)
+.+.+......+..|||||+|.|.+...+.+ ..+.+++.-+............ ...+.+|.-++++++
T Consensus 3 ~kIv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~n~~ii~~D~L~~~~~~ 75 (169)
T smart00650 3 DKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPK 75 (169)
T ss_pred HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHCCCCCEEEEECCHHCCCCCC
T ss_conf 8998863899949799968970299999997316353163788999999986410797799957111255311
No 162
>pfam04672 DUF574 Protein of unknown function (DUF574). Family of uncharacterized proteins.
Probab=95.28 E-value=0.23 Score=27.88 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=77.4
Q ss_pred CCEEEEECCCCCHH---HHHH---HCCCCEEEEEECHHHHHHHHH---CCC---CCEEEECH---HHC---CCCCCCCC-
Q ss_conf 97599965388111---3553---123874887305899983231---168---62365333---656---77547202-
Q gi|254780582|r 37 GCRLLGLGYAIPFF---SCFH---GKVERTLAFMPAGQGATNWPD---QYF---SSTALVSE---GNL---PLADSSVD- 97 (242)
Q Consensus 37 g~~vLdiGcg~g~~---~~~~---~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~d~---~~L---Pf~~~sfD- 97 (242)
-..-||||||.+-- .+.. ....+++-.|..+--+.+.+. ... ...+.+|. +.+ |-..+.+|
T Consensus 70 IrQFLDlGsGlPT~~nvHeVAq~~~P~aRVVYVD~DPvvlaHaraLL~~~~~~~t~~v~aDlrdp~~iL~~p~~~~~lD~ 149 (268)
T pfam04672 70 IRQFLDIGTGLPTEPNVHQVAQRVAPESRVVYVDNDPIVLTHARALLTSTPEGATDYIHADVRDPEEILEHPEARRTLDF 149 (268)
T ss_pred CEEEEEECCCCCCCCCCCHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHCCHHHHHHCCC
T ss_conf 50577605699999972146673299863999889827999999995689877469997777798998659878853787
Q ss_pred ----CHHHHHHHHHHC---CHHHHHHHHHHHCCCCCEEEEEECCCCCC----HHHH--HHCCCCCCCCCCHHHHHHHHHH
Q ss_conf ----002202477522---99999999998469998899973387740----3456--5327665655788899999996
Q gi|254780582|r 98 ----CVLMVHYLEFAE---DPFLMLHEIWRVLTSGGRMIVVVPNKRGM----WARM--EHTPFGSGQPYSWYQMISLLRE 164 (242)
Q Consensus 98 ----~Vi~~h~LE~~~---dp~~~L~Ei~RvLkPgG~lii~~~n~~s~----w~~~--~~~~~~~~r~~~~~~l~~~l~~ 164 (242)
.|++..+|+|+. +|.++++.....|.||-+|+|+-.-...- .... ......-.++.++.++..++
T Consensus 150 ~rPValll~~vLh~v~D~~~p~~iv~~l~d~l~pGS~L~ish~t~d~~p~~~~~~~~~~~~~~~p~~~Rs~~ei~~~f-- 227 (268)
T pfam04672 150 DRPVALSLVAILHFVPDDDDPYGIVRRLMDALPAGSYLVLSHGTSDLNPELVEAVADVYAKGGNPLRLRSRAEVARFF-- 227 (268)
T ss_pred CCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHC--
T ss_conf 886134533443457861049999999997269976599984358888889999999997079986405999999975--
Q ss_pred CCCCCEEE
Q ss_conf 28762125
Q gi|254780582|r 165 ANFTLSIT 172 (242)
Q Consensus 165 ~gf~~~~~ 172 (242)
.||++..-
T Consensus 228 ~g~elveP 235 (268)
T pfam04672 228 DGLELVEP 235 (268)
T ss_pred CCCCCCCC
T ss_conf 99840899
No 163
>PTZ00338 dimethyladenosine transferase; Provisional
Probab=95.20 E-value=0.056 Score=31.38 Aligned_cols=98 Identities=6% Similarity=-0.080 Sum_probs=57.4
Q ss_pred CCHHHHHHH--HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH-HCCCCEEEEEECHHHHHHHHHC-------CCCCEE
Q ss_conf 288989999--999999997501048975999653881113553-1238748873058999832311-------686236
Q gi|254780582|r 13 SSFLGKCTT--DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH-GKVERTLAFMPAGQGATNWPDQ-------YFSSTA 82 (242)
Q Consensus 13 ~s~~G~~~~--~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 82 (242)
...+||.+. ..+.+.+.+......+..|||||.|.|-+...+ .....++++..+...+...... .....+
T Consensus 13 ~K~lGQnFL~D~~i~~~Iv~~a~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~n~~ii 92 (296)
T PTZ00338 13 NKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLQVI 92 (296)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHCCCCCCCCEEE
T ss_conf 98776220589899999999607898995799668542999999835891799994889999999998514456673577
Q ss_pred EECHHHCCCCCCCCCCHH-----------HHHHHHHHCCHH
Q ss_conf 533365677547202002-----------202477522999
Q gi|254780582|r 83 LVSEGNLPLADSSVDCVL-----------MVHYLEFAEDPF 112 (242)
Q Consensus 83 ~~d~~~LPf~~~sfD~Vi-----------~~h~LE~~~dp~ 112 (242)
.+|.-...++ .||.|| +.+.|++.+.+.
T Consensus 93 ~~D~Lk~d~~--~~~~vVaNLPY~ISSpii~kll~~~~~~~ 131 (296)
T PTZ00338 93 EGDALKTEFP--YFDVCVANVPYQISSPLVFKLLSHRPLFR 131 (296)
T ss_pred CCHHHHCCCC--CCCEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 0505318564--11446635870447999999985598532
No 164
>KOG1663 consensus
Probab=95.17 E-value=0.17 Score=28.67 Aligned_cols=103 Identities=14% Similarity=0.035 Sum_probs=64.7
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHH----HHHHHCCCCEEEEEECHHHHHHHHHCC-------CCCEEEEC----HHHC-
Q ss_conf 9999750104897599965388111----355312387488730589998323116-------86236533----3656-
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFF----SCFHGKVERTLAFMPAGQGATNWPDQY-------FSSTALVS----EGNL- 89 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d----~~~L- 89 (242)
+.+.-++.....+++||+|.=+|+- ...+...+++++++...+......... ....+.+. .++|
T Consensus 63 ~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~ 142 (237)
T KOG1663 63 QFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELL 142 (237)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHH
T ss_conf 99999999858733899812127899999974599965999961868888759999860633034234252566699998
Q ss_pred -CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf -775472020022024775229999999999846999889997
Q gi|254780582|r 90 -PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVV 131 (242)
Q Consensus 90 -Pf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~ 131 (242)
-.+.++||.++.=| .=++=....+++-+.+|+||.+++-
T Consensus 143 ~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663 143 ADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred HCCCCCCEEEEEECC---CHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 557998425999736---6677899999998562135389992
No 165
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=95.15 E-value=0.18 Score=28.50 Aligned_cols=174 Identities=10% Similarity=0.004 Sum_probs=82.2
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH----HHHHHCC---CCEEEEEECHHHHHHHHHC-
Q ss_conf 8899996128898999999999999750104897599965388111----3553123---8748873058999832311-
Q gi|254780582|r 5 IVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFF----SCFHGKV---ERTLAFMPAGQGATNWPDQ- 76 (242)
Q Consensus 5 i~~l~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~- 76 (242)
|.++.++|-|.--..+.+.-...|.+.++ .+..++|+|||.+.- ...+... ...+.+|.+...+......
T Consensus 47 It~lpEYYptR~E~~IL~~~~~eIa~~i~--~~~~lVElGsG~~~Kt~~LL~al~~~~~~~~Y~piDIS~~~L~~s~~~l 124 (319)
T TIGR03439 47 ITYSPEYYLTNDEIEILKKHSSDIAASIP--SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAEL 124 (319)
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 87798668537899999998999998558--9976997468872458999999985499742886517699999999874
Q ss_pred ----CCC---CEEEECHHH----CCCCCC-CCCCHHHH--HHHHHH--CCHHHHHHHHHH-HCCCCCEEEEEECCCCCCH
Q ss_conf ----686---236533365----677547-20200220--247752--299999999998-4699988999733877403
Q gi|254780582|r 77 ----YFS---STALVSEGN----LPLADS-SVDCVLMV--HYLEFA--EDPFLMLHEIWR-VLTSGGRMIVVVPNKRGMW 139 (242)
Q Consensus 77 ----~~~---~~~~~d~~~----LPf~~~-sfD~Vi~~--h~LE~~--~dp~~~L~Ei~R-vLkPgG~lii~~~n~~s~w 139 (242)
.+. ..+++|.++ ++.++. .--.+++. .++=-. ++-.++|+.++| +|.|||.++|.+--....-
T Consensus 125 ~~~~~~~l~v~~i~gdy~~~~~~l~~~~~~~~~~l~~flGStIGNf~~~eA~~fL~~~~~~~l~~~d~lLiG~Dl~Kd~~ 204 (319)
T TIGR03439 125 PLGNFSHVRCAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCKDPD 204 (319)
T ss_pred HHCCCCCCEEEEEEECHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHH
T ss_conf 24048975588887537876542057544678759996165446789799999999999972598875896566777989
Q ss_pred HHHH--HCCCCCCCCCCHH---HHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 4565--3276656557888---999999962876212578983086
Q gi|254780582|r 140 ARME--HTPFGSGQPYSWY---QMISLLREANFTLSITSRSLFFPP 180 (242)
Q Consensus 140 ~~~~--~~~~~~~r~~~~~---~l~~~l~~~gf~~~~~~~~~~~pp 180 (242)
-... ..+-+..+.|... ++.+.|..-+|.+..+.+..++=+
T Consensus 205 ~l~~AYnD~~GvTa~FnlN~L~riNr~Lg~d~F~~~~f~h~a~yn~ 250 (319)
T TIGR03439 205 KVLRAYNDPGGVTRRFVLNGLVHANEILGSEAFREEDWEFLGEWDE 250 (319)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCEEEEEECC
T ss_conf 9897630885410999985999999984734576530679999847
No 166
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.13 E-value=0.068 Score=30.87 Aligned_cols=112 Identities=13% Similarity=0.087 Sum_probs=63.0
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH--HCCCCEEEEEECHHHHHHHH--HCCCCCEEEECHHHCCCCCCCCCC
Q ss_conf 99999997501048975999653881113553--12387488730589998323--116862365333656775472020
Q gi|254780582|r 23 AISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH--GKVERTLAFMPAGQGATNWP--DQYFSSTALVSEGNLPLADSSVDC 98 (242)
Q Consensus 23 ~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~LPf~~~sfD~ 98 (242)
...+++...=+...|++|||+|.|+|.-.... .....++..+..+....... .......+..-..++-..+..||+
T Consensus 66 ~lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl 145 (218)
T COG3897 66 VLARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDL 145 (218)
T ss_pred HHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCEEE
T ss_conf 78778760863103653244156667088999985037887627884788885306221562167743133689864038
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEE-EECCC
Q ss_conf 02202477522999999999984699988999-73387
Q gi|254780582|r 99 VLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIV-VVPNK 135 (242)
Q Consensus 99 Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii-~~~n~ 135 (242)
+++..+.---..-+.++. ..+-|+-.|..++ .-|.+
T Consensus 146 ~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 146 LLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred EEEECEECCCHHHHHHHH-HHHHHHHCCCEEEEECCCC
T ss_conf 985030028358898899-9999985797799728997
No 167
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=95.12 E-value=0.25 Score=27.61 Aligned_cols=120 Identities=8% Similarity=-0.041 Sum_probs=69.2
Q ss_pred CCEEEEECCCCCHHHHH--HHCCCCEEEEEECH-------HHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 97599965388111355--31238748873058-------9998323116862365333656775472020022024775
Q gi|254780582|r 37 GCRLLGLGYAIPFFSCF--HGKVERTLAFMPAG-------QGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEF 107 (242)
Q Consensus 37 g~~vLdiGcg~g~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~ 107 (242)
+.+++|||.|.|+...- .......+.+.++. +.+...-.......+.+..|++.-+..-||+|++--
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA---- 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA---- 143 (215)
T ss_pred CCEEEEECCCCCCCHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEHHHHHHCCCCCCCCCEEEEEE----
T ss_conf 8879985799997317688856688189971675079999999998599974986312766014466575898542----
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 22999999999984699988999733877403456532766565578889999999628762125789
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
+.+-..+.+=+...+++||.+++.-+. ++.- -..+...-....++.++.+...
T Consensus 144 va~L~~l~e~~~pllk~~g~~~~~k~~----~~~~-----------e~~e~~~a~~~~~~~~~~~~~~ 196 (215)
T COG0357 144 VASLNVLLELCLPLLKVGGGFLAYKGL----AGKD-----------ELPEAEKAILPLGGQVEKVFSL 196 (215)
T ss_pred ECCHHHHHHHHHHHCCCCCCCHHHHHH----HHHH-----------HHHHHHHHHHHHCCCEEEEEEE
T ss_conf 025688999999843468832026587----6555-----------6899999987626817999986
No 168
>TIGR00138 gidB methyltransferase GidB; InterPro: IPR003682 GidB (glucose-inhibited division protein B) appears to be present and in a single copy in all complete eubacterial genomes so far. Its mode of action is unknown, but a methytransferase fold is reported from the crystal structure. It may be a family of bacterial glucose inhibited division proteins that are involved in the regulation of cell division .; GO: 0007049 cell cycle.
Probab=95.10 E-value=0.11 Score=29.61 Aligned_cols=91 Identities=12% Similarity=0.093 Sum_probs=56.1
Q ss_pred CCEEEEECCCCCHHH--HH-HHCCCCEEEEEECH-------HHHHHHHHCCCCCEEEECHHHC--CCCCCCCCCHHHHHH
Q ss_conf 975999653881113--55-31238748873058-------9998323116862365333656--775472020022024
Q gi|254780582|r 37 GCRLLGLGYAIPFFS--CF-HGKVERTLAFMPAG-------QGATNWPDQYFSSTALVSEGNL--PLADSSVDCVLMVHY 104 (242)
Q Consensus 37 g~~vLdiGcg~g~~~--~~-~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~L--Pf~~~sfD~Vi~~h~ 104 (242)
+.+++|||.|.|+.. .. +......+.+.++. +.+...-.......+.+..|+. .=...+||.|++--.
T Consensus 50 ~~~~~DiGSG~GfPGipL~Ci~~p~~~~~Lles~~KK~~FL~~v~~~L~L~N~~i~~~R~E~~g~~~~~~~~D~~~~RAl 129 (197)
T TIGR00138 50 GKKVIDIGSGAGFPGIPLACILRPELKLTLLESNKKKVNFLKEVKKELGLNNVEILNGRVEDLGSKQHEEQFDVITSRAL 129 (197)
T ss_pred CCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHEEHHHHHCCCCCCCCCCCEEEECCC
T ss_conf 31267734789714565342205764289842774068999999998389982420011255055453335787898031
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 775229999999999846999889997
Q gi|254780582|r 105 LEFAEDPFLMLHEIWRVLTSGGRMIVV 131 (242)
Q Consensus 105 LE~~~dp~~~L~Ei~RvLkPgG~lii~ 131 (242)
. .-..+++=+...++++|.+++.
T Consensus 130 ~----~l~~~~e~~~~L~~~~G~~~~~ 152 (197)
T TIGR00138 130 V----SLNELLELTLPLLKVGGYFLAY 152 (197)
T ss_pred H----HHHHHHHHHHHCCCCCCEEEEE
T ss_conf 0----2468888663037889789997
No 169
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=94.85 E-value=0.19 Score=28.32 Aligned_cols=116 Identities=6% Similarity=-0.087 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHH-HHHHCCCCEEEEEE-CHHHHHHHHH------CCCCCEEEECHH
Q ss_conf 989999999999997501048975999653881113-55312387488730-5899983231------168623653336
Q gi|254780582|r 16 LGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFS-CFHGKVERTLAFMP-AGQGATNWPD------QYFSSTALVSEG 87 (242)
Q Consensus 16 ~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~------~~~~~~~~~d~~ 87 (242)
.-..+++.+...|.. ...|.++||+=||+|-+. +.++++...+.+.+ +......... ......+..|..
T Consensus 35 T~drvREalFn~L~~---~i~~~~vLDLFAGSGalGlEALSRGA~~v~fVE~~~~~~~~i~~N~~~l~~~~~~ii~~da~ 111 (198)
T PRK10909 35 TTDRVRETLFNWLAP---VIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVSQQLIKNLATLKAGNARVVNTNAL 111 (198)
T ss_pred CCHHHHHHHHHHHHH---HCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEHHHH
T ss_conf 838899999987576---42998799827774688999998799789999789999999999999848886799955699
Q ss_pred H-CCCCCCCCCCHHHHHHHHHHCCHHHHHHHH--HHHCCCCCEEEEEECCC
Q ss_conf 5-677547202002202477522999999999--98469998899973387
Q gi|254780582|r 88 N-LPLADSSVDCVLMVHYLEFAEDPFLMLHEI--WRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 88 ~-LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei--~RvLkPgG~lii~~~n~ 135 (242)
. |.-..+.||+|++==--+. .....+++.+ ...|+++|.+++-....
T Consensus 112 ~~L~~~~~~fDlIF~DPPY~~-~~~~~~l~~l~~~~~L~~~gliiiE~~~~ 161 (198)
T PRK10909 112 SFLAQPGTPHNVVFVDPPFRK-GLLEETINLLEQNGWLADDALIYVESEVE 161 (198)
T ss_pred HHHHCCCCCEEEEEECCCCCC-CHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 986255995218998999765-55999999999888918996999995488
No 170
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=94.81 E-value=0.31 Score=27.16 Aligned_cols=113 Identities=12% Similarity=0.057 Sum_probs=63.5
Q ss_pred HHHHHHHHHHCC---CCCCCEEEEECCCCCHHH-HHHHCCCCEEEE-EECHHHHHHHHHC-----CCCCEEEEC-HH---
Q ss_conf 999999997501---048975999653881113-553123874887-3058999832311-----686236533-36---
Q gi|254780582|r 22 DAISKVLSTTWD---DVTGCRLLGLGYAIPFFS-CFHGKVERTLAF-MPAGQGATNWPDQ-----YFSSTALVS-EG--- 87 (242)
Q Consensus 22 ~~~~~~l~~~l~---~~~g~~vLdiGcg~g~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~~d-~~--- 87 (242)
..+++.|..++. ...|.++||+=||+|-+. +.++++...+.+ +-+.......... .....+..+ ..
T Consensus 26 ~rvrEalFniL~~~~~i~~~~~LDLFaGSGslglEAlSRGA~~v~fvE~~~~a~~~i~~N~~~l~~~~~~~~~~~~~~~~ 105 (181)
T pfam03602 26 DRVREALFNILAPYFELGGARVLDLFAGSGALGLEALSRGASSVVFVEKDKKAVATLKENLEALGLEGAVLRMDAARALL 105 (181)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 88999999750134554898799827872698999997699889999699999999999999858997799810899998
Q ss_pred HCCCCCCCCCCHHHHHHHHHHCCHHHHHHHH--HHHCCCCCEEEEEECCC
Q ss_conf 5677547202002202477522999999999--98469998899973387
Q gi|254780582|r 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEI--WRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 88 ~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei--~RvLkPgG~lii~~~n~ 135 (242)
.+.-....||+|++==--+. +.-..++..+ ..+|+++|.+++-....
T Consensus 106 ~~~~~~~~fdiIF~DPPY~~-~~~~~~l~~l~~~~~l~~~~iiiiE~~~~ 154 (181)
T pfam03602 106 RLAGKGPPFDLVFLDPPYAK-GLIEEALELLAEKGWLNPNALIVVETESD 154 (181)
T ss_pred HHCCCCCCCCEEECCCCCCC-HHHHHHHHHHHHCCCCCCCEEEEEEECCC
T ss_conf 75335788876635997542-06999999999666657980999996687
No 171
>PRK10083 putative dehydrogenase; Provisional
Probab=94.79 E-value=0.32 Score=27.07 Aligned_cols=138 Identities=11% Similarity=-0.010 Sum_probs=68.5
Q ss_pred HHCCCCCCCEEEEECCCC-CHHHH-HHHC---CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCC--CCCCCCCCHHHH
Q ss_conf 750104897599965388-11135-5312---3874887305899983231168623653336567--754720200220
Q gi|254780582|r 30 TTWDDVTGCRLLGLGYAI-PFFSC-FHGK---VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP--LADSSVDCVLMV 102 (242)
Q Consensus 30 ~~l~~~~g~~vLdiGcg~-g~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LP--f~~~sfD~Vi~~ 102 (242)
.......|.++|-+|||. |.+.. .+.. ....++.+.+........+......+....+++. +.....|..+
T Consensus 154 ~~~~~~~g~~VlV~G~G~iGl~~~~~~~~~~ga~~Vi~~d~~~~rl~~A~~~GAd~vi~~~~~~~~~~~~~~G~~~dv-- 231 (339)
T PRK10083 154 GRTGPTEQDVALIYGAGPVGLTIVQVLKGVYGVKNVIVADRIDERLALAKESGADWVINNAQESLAEALAEKGVKPTL-- 231 (339)
T ss_pred HHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHCCCCCCE--
T ss_conf 861899998899958765999999999985699789993798999999997199899848876699999853999619--
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC----CHHHHHHCCCCCCCCCC---HHHHHHHHHHCCCCCEE
Q ss_conf 24775229999999999846999889997338774----03456532766565578---88999999962876212
Q gi|254780582|r 103 HYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRG----MWARMEHTPFGSGQPYS---WYQMISLLREANFTLSI 171 (242)
Q Consensus 103 h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s----~w~~~~~~~~~~~r~~~---~~~l~~~l~~~gf~~~~ 171 (242)
++|.+..+ ..++++-++++|||++++.+..... ......+..--.+..+. ..++.+|+.+..+.+..
T Consensus 232 -vid~~g~~-~~~~~a~~~~~~gG~iv~~G~~~~~~~i~~~~~~~k~l~i~gs~~~~~~~~~~~~li~~g~i~~~~ 305 (339)
T PRK10083 232 -IFDAACHP-SILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELTIYSSRLNANKFPVVIDWLAKGLIDPEK 305 (339)
T ss_pred -EEECCCCH-HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHCEEEEEECCCCHHHHHHHHHHHHCCCCCHHH
T ss_conf -99666688-999999998518809999925899875368887426789999226888999999999859999157
No 172
>pfam10672 Methyltrans_SAM S-adenosylmethionine-dependent methyltransferase. Members of this family are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases.
Probab=94.75 E-value=0.16 Score=28.81 Aligned_cols=123 Identities=18% Similarity=0.095 Sum_probs=71.2
Q ss_pred CCCCCEEEEECCCCCHHHHHH--HCCCCEEEEEECHHHHHHHHHCCC--------CCEEEECHHH-CC-C-CCCCCCCHH
Q ss_conf 048975999653881113553--123874887305899983231168--------6236533365-67-7-547202002
Q gi|254780582|r 34 DVTGCRLLGLGYAIPFFSCFH--GKVERTLAFMPAGQGATNWPDQYF--------SSTALVSEGN-LP-L-ADSSVDCVL 100 (242)
Q Consensus 34 ~~~g~~vLdiGcg~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~~~-LP-f-~~~sfD~Vi 100 (242)
...|.+||++=|-+|-+.... ..+..++.+|.|...+....++.. ...+.+|.-+ |. + ..+.||+||
T Consensus 121 ~~~g~rvLn~Fsytg~fsv~A~~~GA~~v~~vD~S~~al~~a~~N~~lN~~~~~~~~~~~~D~f~~l~~~~~~~~fD~Vi 200 (286)
T pfam10672 121 NAKGKNVLNLFAYTCGFSVAAIAGGASQVVNVDMARGSLSKGRDNHRLNGHDLGRVSFLGHDIFKSWGKIKKLGPYDLVI 200 (286)
T ss_pred HCCCCCEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHCCCCCCEEE
T ss_conf 72898325311478699999876798779999198899999999999769995436999830999999986179998799
Q ss_pred H--------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 2--------02477522999999999984699988999733877403456532766565578889999999628762125
Q gi|254780582|r 101 M--------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSIT 172 (242)
Q Consensus 101 ~--------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~ 172 (242)
+ ...+ ..+-..+++.+-++|+|||.|+.+.=.+ ..+...+.+.+..++=+++..
T Consensus 201 lDPPsf~k~~~~~--~~~Y~~l~~~a~~ll~~gG~L~~~s~s~----------------~l~~~~~~~~~~~~~~~~~~~ 262 (286)
T pfam10672 201 IDPPSFQKGSFAL--TKDYKKILRRLPELLVEGGTVLACVNSP----------------AVGPDFLIEEMAEEAPSLHFV 262 (286)
T ss_pred ECCCCCCCCHHHH--HHHHHHHHHHHHHHCCCCCEEEEECCCC----------------CCCHHHHHHHHHHHCCCEEEE
T ss_conf 8799988872478--8789999999998608996899981886----------------589999999999858762999
Q ss_pred EE
Q ss_conf 78
Q gi|254780582|r 173 SR 174 (242)
Q Consensus 173 ~~ 174 (242)
+.
T Consensus 263 ~r 264 (286)
T pfam10672 263 ER 264 (286)
T ss_pred EE
T ss_conf 98
No 173
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=94.63 E-value=0.21 Score=28.10 Aligned_cols=96 Identities=13% Similarity=0.047 Sum_probs=55.5
Q ss_pred CCCCCCCEEEEECCCC-CHHHHHHHC---CCCEEEEEECHHHHHHHHHCCCCCEEE-E---CHHHCCCCCCCCCCHHHHH
Q ss_conf 0104897599965388-111355312---387488730589998323116862365-3---3365677547202002202
Q gi|254780582|r 32 WDDVTGCRLLGLGYAI-PFFSCFHGK---VERTLAFMPAGQGATNWPDQYFSSTAL-V---SEGNLPLADSSVDCVLMVH 103 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---d~~~LPf~~~sfD~Vi~~h 103 (242)
.....|.++|-+|+|. |.+.....+ ...+++.+.+...+....+ .....+. . +.++..-....+|+|
T Consensus 165 ~~~~~g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~~rl~~a~~-~Ga~~~i~~~~~~~~~~~~~~g~~Dvv---- 239 (343)
T PRK09880 165 AGDLQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSPRSLSLARQ-MGADVLVNPQNDDMDHWKAEKGYFDVS---- 239 (343)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-CCCCEEECCCCCCHHHHHHHCCCCCEE----
T ss_conf 477569889998477679999999998699879999797899999997-299799879874399999636997789----
Q ss_pred HHHHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 4775229999999999846999889997338
Q gi|254780582|r 104 YLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 104 ~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
+|.+..+. .++.+.+.++|||++++++..
T Consensus 240 -ie~~G~~~-~~~~al~~~r~gG~iv~vG~~ 268 (343)
T PRK09880 240 -FEVSGHPS-SVNTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred -EEECCCHH-HHHHHHHHCCCCEEEEEEECC
T ss_conf -99219999-999999737798399999727
No 174
>TIGR00080 pimt protein-L-isoaspartate O-methyltransferase; InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase () (PCMT) (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyzes the transfer of a methyl group from S- adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerization of normal L-aspartyl and L- asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process.
Probab=94.58 E-value=0.022 Score=33.67 Aligned_cols=100 Identities=10% Similarity=0.117 Sum_probs=57.7
Q ss_pred HHHHHCC--CCCCCEEEEECCCCCHHHHHHHCC----CCEEEEEECHHHHHHHHH----------CCCC-CEEEECHHHC
Q ss_conf 9997501--048975999653881113553123----874887305899983231----------1686-2365333656
Q gi|254780582|r 27 VLSTTWD--DVTGCRLLGLGYAIPFFSCFHGKV----ERTLAFMPAGQGATNWPD----------QYFS-STALVSEGNL 89 (242)
Q Consensus 27 ~l~~~l~--~~~g~~vLdiGcg~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~----------~~~~-~~~~~d~~~L 89 (242)
...++|+ -.++.+|||||||+||....++.. +.++++.--++-...+.+ ..++ ....+|.. .
T Consensus 71 ~m~~yL~nhL~~~~~vLeiG~GSGY~aavlA~~v~~~G~V~SiEri~~L~~~A~~~Lk~hhseqL~~~NV~v~~GDG~-~ 149 (228)
T TIGR00080 71 KMTEYLENHLKPGAKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELVEKARRRLKKHHSEQLGLDNVIVIEGDGR-Q 149 (228)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-C
T ss_conf 999988852140355665047855899999998713971899853578899999876543144406886589977886-5
Q ss_pred CCC-CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 775-47202002202477522999999999984699988999733
Q gi|254780582|r 90 PLA-DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 90 Pf~-~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
=|+ -.-||.|+..-+=--+ |.++++. |+.||+|++=+-
T Consensus 150 G~~~~APYd~I~~~AA~k~i--P~AL~~Q----L~eGG~L~~Pv~ 188 (228)
T TIGR00080 150 GWEEKAPYDAILVTAAAKEI--PKALIDQ----LEEGGILVLPVG 188 (228)
T ss_pred CHHHCCCCCEEEEECCCCCC--CHHHHHH----HHHCCEEEECCE
T ss_conf 71024883527752378987--6578999----972898862000
No 175
>KOG2904 consensus
Probab=94.50 E-value=0.15 Score=28.90 Aligned_cols=36 Identities=14% Similarity=-0.026 Sum_probs=21.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHH
Q ss_conf 104897599965388111355312---387488730589
Q gi|254780582|r 33 DDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQ 68 (242)
Q Consensus 33 ~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~ 68 (242)
....+.++||+|||+|-.+..+.. ....+++|.+..
T Consensus 145 ~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~ 183 (328)
T KOG2904 145 EHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKA 183 (328)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHH
T ss_conf 532666688705783188999983478734899853288
No 176
>pfam01564 Spermine_synth Spermine/spermidine synthase. Spermine and spermidine are polyamines. This family includes spermidine synthase that catalyses the fifth (last) step in the biosynthesis of spermidine from arginine, and spermine synthase.
Probab=94.27 E-value=0.34 Score=26.89 Aligned_cols=133 Identities=8% Similarity=-0.151 Sum_probs=69.2
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHH----------CCCCCEEEECHHH-CCCCCCCCCCH
Q ss_conf 0489759996538811135531238---74887305899983231----------1686236533365-67754720200
Q gi|254780582|r 34 DVTGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPD----------QYFSSTALVSEGN-LPLADSSVDCV 99 (242)
Q Consensus 34 ~~~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~~~~~~d~~~-LPf~~~sfD~V 99 (242)
....++||-+|.|.|.......+.. ++...+.+..-+...+. ......+.+|+.+ +.-..+.||+|
T Consensus 73 ~~~pk~VLIiGGGDG~~~rEvlk~~~v~~v~~VEiD~~Vv~~~~~~lp~~~~~~~dprv~l~~~Dg~~~l~~~~~~yDvI 152 (240)
T pfam01564 73 HPNPKKVLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEFSKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVI 152 (240)
T ss_pred CCCCCEEEEECCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCCCEE
T ss_conf 88855367645865799999856799538999757889999999987985243479855999816899998572544589
Q ss_pred HHHHHHHH--H--CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 22024775--2--2999999999984699988999733877403456532766565578889999999628762125789
Q gi|254780582|r 100 LMVHYLEF--A--EDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 100 i~~h~LE~--~--~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
++=-+=.. . --...+.+.+.|+|+|||.++.-.-+|+. . ...-..+..-++... ... ..+.
T Consensus 153 I~D~~DP~~~~~~Lfs~eFy~~~~~~L~~~Gi~v~Q~~sp~~---~----------~~~~~~i~~~l~~~F-~~v-~~y~ 217 (240)
T pfam01564 153 IVDSTDPVGPAENLFSKEFYDLLKRALKEDGVFVTQAESPWL---H----------LELIINILKNGKKVF-PVV-MPYV 217 (240)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHH---C----------HHHHHHHHHHHHHHC-CCC-EEEE
T ss_conf 995899765334442299999999865999789992488343---7----------999999999999778-982-6998
Q ss_pred EEECCC
Q ss_conf 830865
Q gi|254780582|r 176 LFFPPT 181 (242)
Q Consensus 176 ~~~pp~ 181 (242)
.+.|-+
T Consensus 218 ~~vPsy 223 (240)
T pfam01564 218 VPVPTY 223 (240)
T ss_pred EECCCC
T ss_conf 674668
No 177
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.35 Score=26.82 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=87.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH-HC-CCCEEEEEECHHHHHHHHHCCCCCEEEEC--
Q ss_conf 961288989999999999997501048975999653881113553-12-38748873058999832311686236533--
Q gi|254780582|r 10 QFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH-GK-VERTLAFMPAGQGATNWPDQYFSSTALVS-- 85 (242)
Q Consensus 10 ~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-- 85 (242)
.=|.|.=|-.+. ..+..+-=...|..+||+|.+||-|...+ .+ +.+++++|.....+ .+.-....+.+..+
T Consensus 57 ~~yVSRG~~KL~----~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql-~~kLR~d~rV~~~E~t 131 (245)
T COG1189 57 QPYVSRGGLKLE----KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQL-HWKLRNDPRVIVLERT 131 (245)
T ss_pred CCCCCCHHHHHH----HHHHHCCCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEECCCCCC-CHHHHCCCCEEEEECC
T ss_conf 676261899999----99996486889978998267876299999875874799997037743-7867359847998527
Q ss_pred -HHHCC---CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCC-----CCCCCCHH
Q ss_conf -36567---7547202002202477522999999999984699988999733877403456532766-----56557888
Q gi|254780582|r 86 -EGNLP---LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFG-----SGQPYSWY 156 (242)
Q Consensus 86 -~~~LP---f~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~-----~~r~~~~~ 156 (242)
...+- |.. ..|.++|--.. + ....+|-.+..+++|+|.++..+-- ..--|+..-..-+ ..+.-...
T Consensus 132 N~r~l~~~~~~~-~~d~~v~DvSF--I-SL~~iLp~l~~l~~~~~~~v~LvKP-QFEagr~~v~kkGvv~d~~~~~~v~~ 206 (245)
T COG1189 132 NVRYLTPEDFTE-KPDLIVIDVSF--I-SLKLILPALLLLLKDGGDLVLLVKP-QFEAGREQVGKKGVVRDPKLHAEVLS 206 (245)
T ss_pred CHHHCCHHHCCC-CCCEEEEEEEH--H-HHHHHHHHHHHHCCCCCEEEEEECC-HHHHHHHHCCCCCEECCCCHHHHHHH
T ss_conf 831189878176-77847996423--3-1998889999742788638997365-55540432276863448015899999
Q ss_pred HHHHHHHHCCCCCEEEEE
Q ss_conf 999999962876212578
Q gi|254780582|r 157 QMISLLREANFTLSITSR 174 (242)
Q Consensus 157 ~l~~~l~~~gf~~~~~~~ 174 (242)
++.+|+...||.+.....
T Consensus 207 ~i~~~~~~~g~~~~gl~~ 224 (245)
T COG1189 207 KIENFAKELGFQVKGLIK 224 (245)
T ss_pred HHHHHHHHCCCEEEEEEC
T ss_conf 999888645957865572
No 178
>pfam00398 RrnaAD Ribosomal RNA adenine dimethylase.
Probab=94.18 E-value=0.16 Score=28.71 Aligned_cols=79 Identities=6% Similarity=-0.042 Sum_probs=49.0
Q ss_pred HHHHHHH--HHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHCC----CCCEEEECHH
Q ss_conf 8989999--9999999975010489759996538811135531-2387488730589998323116----8623653336
Q gi|254780582|r 15 FLGKCTT--DAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQY----FSSTALVSEG 87 (242)
Q Consensus 15 ~~G~~~~--~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~ 87 (242)
.+||.+. ..+.+.+.+......+..|||||.|.|.+...+. .....+++..+...+....... ....+.+|.-
T Consensus 7 ~lGQnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~L~~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~ii~~D~l 86 (258)
T pfam00398 7 SYGQNFLTNKKVINRIVDKANLQESDTVLEIGPGKGALTEELAKRAKQVVAIEIDPRLAKRLQKKLALHPNVEVVHQDFL 86 (258)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCHH
T ss_conf 67753138999999999970899999799979962399999996169479995447799999986442897799966301
Q ss_pred HCCCCC
Q ss_conf 567754
Q gi|254780582|r 88 NLPLAD 93 (242)
Q Consensus 88 ~LPf~~ 93 (242)
.+.+++
T Consensus 87 ~~d~~~ 92 (258)
T pfam00398 87 KFSFPK 92 (258)
T ss_pred CCCCCC
T ss_conf 057545
No 179
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=94.11 E-value=0.25 Score=27.64 Aligned_cols=64 Identities=5% Similarity=-0.027 Sum_probs=41.0
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHH
Q ss_conf 996128898999999999999750104897599965388111355312-387488730589998323
Q gi|254780582|r 9 RQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWP 74 (242)
Q Consensus 9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (242)
.+||+.... ..+.+-+.+.+++....+.+|||+-||.|.+...++. ...+++++.+..++..+.
T Consensus 208 ~sFfQvN~~--~~~~L~~~~~~~~~~~~~~~vlDlycG~G~~sl~lA~~~~~V~gvE~~~~av~~A~ 272 (375)
T PRK03522 208 QSFFQTNPA--VAAQLYATARDWVRELPPKSMWDLFCGVGGFGLHCATPDMQLTGIEISAEAIACAK 272 (375)
T ss_pred CCCCCCCHH--HHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCEEEEEEECHHHHHHHH
T ss_conf 321465999--99999999999863158978999657853888987641788999984599999999
No 180
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=93.90 E-value=0.42 Score=26.35 Aligned_cols=145 Identities=16% Similarity=0.088 Sum_probs=86.6
Q ss_pred HHHHHHHCC---CCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHCC------------------CCCEE
Q ss_conf 999997501---04897599965388111355312-387488730589998323116------------------86236
Q gi|254780582|r 25 SKVLSTTWD---DVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQY------------------FSSTA 82 (242)
Q Consensus 25 ~~~l~~~l~---~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------------------~~~~~ 82 (242)
...|.++++ ...|.+|+-=|||.+.-...+.+ +..+++++.+..++...-..+ .....
T Consensus 23 np~L~~~~~~L~~~~~~rVlVPlCGKs~Dm~wLa~~G~~VvGvEls~~Av~~ff~e~~l~~~~~~~~~~~~y~~~~i~i~ 102 (218)
T PRK13255 23 NPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQVRQSGEFEHYQAGEISLY 102 (218)
T ss_pred CHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEECHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCEEEE
T ss_conf 97999999960878898699948986776999984897269983529999999997389863013676037753882799
Q ss_pred EECHHHCCCC-CCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHH
Q ss_conf 5333656775-47202002202477522--99999999998469998899973387740345653276656557888999
Q gi|254780582|r 83 LVSEGNLPLA-DSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMI 159 (242)
Q Consensus 83 ~~d~~~LPf~-~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~ 159 (242)
++|.-+|.-+ -+.||.|.=...|.-++ .-.+-.+.+.+.|+|||+.++++.+...- .....|| ..+..+++
T Consensus 103 ~gDfF~L~~~~~g~~DaIyDRaal~ALpp~~R~~Y~~~l~~ll~~g~~~LLitl~Y~q~--~~~GPPF----sv~~~Ev~ 176 (218)
T PRK13255 103 CGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQE--ELAGPPF----SVSDEEVE 176 (218)
T ss_pred ECCCCCCCHHHCCCCCEEEECCCEECCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCC--CCCCCCC----CCCHHHHH
T ss_conf 66420278635477488997538012898999999999998649987489999862765--5689699----89999999
Q ss_pred HHHHHCCCCCEEEEEEE
Q ss_conf 99996287621257898
Q gi|254780582|r 160 SLLREANFTLSITSRSL 176 (242)
Q Consensus 160 ~~l~~~gf~~~~~~~~~ 176 (242)
.+.. ..|+++..+...
T Consensus 177 ~ly~-~~~~i~~L~~~~ 192 (218)
T PRK13255 177 ALFA-GDFEIELLERQD 192 (218)
T ss_pred HHHC-CCCEEEEEEEEC
T ss_conf 9843-786799976313
No 181
>pfam11899 DUF3419 Protein of unknown function (DUF3419). This family of proteins are functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=93.89 E-value=0.052 Score=31.53 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=36.7
Q ss_pred CCCCCCCCCHHHHHHHHHHCCH--HHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 7754720200220247752299--99999999846999889997338
Q gi|254780582|r 90 PLADSSVDCVLMVHYLEFAEDP--FLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 90 Pf~~~sfD~Vi~~h~LE~~~dp--~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
-.+++|+|.++++...+++++. .+.++++.|+++|||++++=...
T Consensus 287 ~~~~~s~d~~vLlD~~DWm~~~~~~~~~~~i~r~a~pgaRVl~Rsa~ 333 (376)
T pfam11899 287 RLPAGSLTRAVLLDAMDWMDPEQLNALWREITRTAAPGARVLFRSAA 333 (376)
T ss_pred HCCCCCEEEEEECCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 38998733899702553499999999999999974899689983389
No 182
>KOG2798 consensus
Probab=93.86 E-value=0.09 Score=30.19 Aligned_cols=80 Identities=15% Similarity=0.185 Sum_probs=58.7
Q ss_pred CCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCC--CCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 472020022024775229999999999846999889997338774034565327--665655788899999996287621
Q gi|254780582|r 93 DSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTP--FGSGQPYSWYQMISLLREANFTLS 170 (242)
Q Consensus 93 ~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~--~~~~r~~~~~~l~~~l~~~gf~~~ 170 (242)
.+++|+|+...-++-..|--..|+-|..+|||||..+-.+|--+. ..+... ....--++...|....+..||+++
T Consensus 257 ~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlYH---F~d~~g~~~~~siEls~edl~~v~~~~GF~~~ 333 (369)
T KOG2798 257 AGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLYH---FEDTHGVENEMSIELSLEDLKRVASHRGFEVE 333 (369)
T ss_pred CCCCCEEEEEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCEEEE---CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 775554899987524377999999999851578389932562551---36788876553102469999999984582787
Q ss_pred EEEEE
Q ss_conf 25789
Q gi|254780582|r 171 ITSRS 175 (242)
Q Consensus 171 ~~~~~ 175 (242)
..+..
T Consensus 334 ke~~I 338 (369)
T KOG2798 334 KERGI 338 (369)
T ss_pred EEEEE
T ss_conf 74001
No 183
>PRK01581 speE spermidine synthase; Validated
Probab=93.80 E-value=0.52 Score=25.84 Aligned_cols=127 Identities=17% Similarity=0.101 Sum_probs=72.5
Q ss_pred CCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHC-------------CCCCEEEECHH-HCCCCCCCCCC
Q ss_conf 89759996538811135531238---748873058999832311-------------68623653336-56775472020
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQ-------------YFSSTALVSEG-NLPLADSSVDC 98 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------~~~~~~~~d~~-~LPf~~~sfD~ 98 (242)
.-.+||-+|.|.|...+..-+.. .+.-.+.++.+..-.+.. .....+.+|+- -|--..+.||+
T Consensus 139 ~~~rVLILGGGDGLAlREVLKyp~Ve~VTLVDLDP~mt~Lar~~p~L~~LN~~AL~DPRV~Vvn~DAf~wL~~~~~~FDv 218 (363)
T PRK01581 139 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMIDMARNVPELVSLNKSAFFDNRVNTHVCDAKEFLSSPSSLYDV 218 (363)
T ss_pred CCCEEEEEECCCHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCCE
T ss_conf 87738998076439999987179856278995699999987519799875120014980499921089998616754428
Q ss_pred HHHHHHHHHHCCH----------HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 0220247752299----------999999998469998899973387740345653276656557888999999962876
Q gi|254780582|r 99 VLMVHYLEFAEDP----------FLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFT 168 (242)
Q Consensus 99 Vi~~h~LE~~~dp----------~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~ 168 (242)
||.=. +|| ..+.+-+.+.|+|+|.+++-.-.|+.- .-+-..+..-++.+||.
T Consensus 219 IIVDl-----PDP~n~~L~KLYS~eFY~Ll~~~La~dG~~vVQSTSPyfA-------------pkaFWsI~~Tl~aAGl~ 280 (363)
T PRK01581 219 IIIDF-----PDPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA-------------PLVYWSIGNTIEHAGLT 280 (363)
T ss_pred EEEEC-----CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC-------------CCCEEEHHHHHHHCCCC
T ss_conf 99958-----9998624666735999999998619885399960797657-------------62336777779873675
Q ss_pred CEEEEEEEEECCCC
Q ss_conf 21257898308655
Q gi|254780582|r 169 LSITSRSLFFPPTH 182 (242)
Q Consensus 169 ~~~~~~~~~~pp~~ 182 (242)
+...+ .+.|-++
T Consensus 281 t~pYH--v~VPSFG 292 (363)
T PRK01581 281 VKSYH--TIVPSFG 292 (363)
T ss_pred CCCCE--ECCCCCC
T ss_conf 41342--0688886
No 184
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=93.68 E-value=0.44 Score=26.23 Aligned_cols=96 Identities=11% Similarity=0.008 Sum_probs=54.2
Q ss_pred CCCCCCCEEEEECCCC-CHHHHHHHC---CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHC-----CCCCC-CCCCHHH
Q ss_conf 0104897599965388-111355312---387488730589998323116862365333656-----77547-2020022
Q gi|254780582|r 32 WDDVTGCRLLGLGYAI-PFFSCFHGK---VERTLAFMPAGQGATNWPDQYFSSTALVSEGNL-----PLADS-SVDCVLM 101 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L-----Pf~~~-sfD~Vi~ 101 (242)
.....|.+||-+|+|. |.+.....+ ...+++.+.+...+....+......+....+++ .+-++ -+|+|+
T Consensus 172 ~~~~~g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~~rl~~A~~lGa~~~i~~~~~~~~~~v~~~t~g~G~Dvvi- 250 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVI- 250 (358)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCCEEE-
T ss_conf 0799998899967376999999999983991899991988999999965990997399878899999985898874999-
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 02477522999999999984699988999733
Q gi|254780582|r 102 VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 102 ~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
|.+..+. .++++-+.++|+|++++.+.
T Consensus 251 ----e~~G~~~-~~~~al~~~~~gG~iv~~G~ 277 (358)
T TIGR03451 251 ----DAVGRPE-TYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred ----ECCCCHH-HHHHHHHHHCCCCEEEEEEC
T ss_conf ----9999989-99999997627969999922
No 185
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=93.21 E-value=0.4 Score=26.47 Aligned_cols=63 Identities=17% Similarity=0.033 Sum_probs=39.2
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHH
Q ss_conf 996128898999999999999750104897599965388111355312-387488730589998323
Q gi|254780582|r 9 RQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWP 74 (242)
Q Consensus 9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~ 74 (242)
.+||+....+ .+.+-+...+++....+ +|+|+=||.|.+...++. ...+++++.+..++..+.
T Consensus 173 ~sFfQvN~~~--~~~l~~~a~~~~~~~~~-~vlDlYcG~Gtfsl~lA~~~~~V~GvE~~~~AV~~A~ 236 (353)
T pfam05958 173 NSFTQPNAAV--NIKMLEWACEVTQGSKG-DLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred CCEECCCHHH--HHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHH
T ss_conf 9977869899--99999999998626899-5899846888888999864787999962599999999
No 186
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=93.09 E-value=0.34 Score=26.90 Aligned_cols=127 Identities=15% Similarity=0.100 Sum_probs=71.1
Q ss_pred CHHHHHHHHC----CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH---HCCCCEEEEEECHHHHHHH---
Q ss_conf 7889999612----88989999999999997501048975999653881113553---1238748873058999832---
Q gi|254780582|r 4 DIVELRQFYS----SFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH---GKVERTLAFMPAGQGATNW--- 73 (242)
Q Consensus 4 di~~l~~wY~----s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~---~~~~~~~~~~~~~~~~~~~--- 73 (242)
|+..|++ |+ .--|...-..+.+.++. +.-..++.-+|+|||.|..-... .....++++......+..+
T Consensus 8 ~~~~L~~-Y~~fs~~vYGEllp~fis~ii~~-~~l~~~dvF~DLGSGVGnvv~QaAl~tgc~~s~GiEi~~~~a~~A~~~ 85 (205)
T pfam08123 8 DANKLNH-YKAFSNEVYGELLPEFLSDVLDK-CNLGPQDVFVDLGSGVGNCVLQAALEFGCKLSFGCEIMDNASNLAELQ 85 (205)
T ss_pred CHHHHCC-CCCCCCCCCCCCCHHHHHHHHHH-HCCCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHHH
T ss_conf 9678606-78999755113588999999998-398976889985888329999999870965388888656689999999
Q ss_pred ----H--------HCCCCCEEEECHHHCCCCCC---CCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf ----3--------11686236533365677547---202002202477522999999999984699988999733
Q gi|254780582|r 74 ----P--------DQYFSSTALVSEGNLPLADS---SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 74 ----~--------~~~~~~~~~~d~~~LPf~~~---sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
+ +......+.+|..+-+..++ .-|+|++.+ +-|-++...-|.|+.+-||+|-+++-+-+
T Consensus 86 ~~~~~~~~~~~G~~~~~~~l~~gdFl~~~~~~~~~~~a~VI~vNN-~~F~~~Ln~~L~e~f~~lk~GtkIVS~k~ 159 (205)
T pfam08123 86 DEEFKKRCKLFGKKLGKIEFIRGSFLDNERVEEIIPEADVILVNN-FAFDPELNLQLKEMLQDLKDGCKIISLKS 159 (205)
T ss_pred HHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHCCCCCCEEEECCC
T ss_conf 999999999958876873899777788588998634798899943-24698899999999972999888997765
No 187
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=92.83 E-value=0.45 Score=26.21 Aligned_cols=63 Identities=13% Similarity=0.000 Sum_probs=38.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHH
Q ss_conf 96128898999999999999750104897599965388111355312-3874887305899983231
Q gi|254780582|r 10 QFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPD 75 (242)
Q Consensus 10 ~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 75 (242)
+||+.... ..+..-+.+.+++.... .++||+=||.|.+...++. ...+++++.+..++..+..
T Consensus 184 sFfQvN~~--~~e~l~~~a~~~~~~~~-~~vlDLYcG~Gtfsl~LA~~~~~V~gVE~~~~aV~~A~~ 247 (363)
T PRK05031 184 SFTQPNAA--VNEKMLEWALDATKGSK-GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQY 247 (363)
T ss_pred CCCCCCHH--HHHHHHHHHHHHHHCCC-CCEEEEECCCCHHHHHHHHHCCEEEEEECCHHHHHHHHH
T ss_conf 84247989--99999999999761389-828986058664269988626879999538999999999
No 188
>PRK03612 spermidine synthase; Provisional
Probab=92.78 E-value=0.75 Score=24.95 Aligned_cols=133 Identities=12% Similarity=-0.051 Sum_probs=72.9
Q ss_pred CCCCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHC-------------CCCCEEEECHH-HCCCCCCCC
Q ss_conf 0489759996538811135531238---748873058999832311-------------68623653336-567754720
Q gi|254780582|r 34 DVTGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQ-------------YFSSTALVSEG-NLPLADSSV 96 (242)
Q Consensus 34 ~~~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------------~~~~~~~~d~~-~LPf~~~sf 96 (242)
+..-++||-+|.|.|....+..+.. ++...+.++..+.-.++. .....+..|.. .+.-.++.|
T Consensus 291 ~~~p~~VLiiGGGdG~a~revLk~~~ve~v~lVelD~~vv~lar~~~~l~~~n~~a~~DpRv~v~~~Da~~~l~~~~~~y 370 (516)
T PRK03612 291 SPRARRVLILGGGDGLALREVLKYPDVEQVTLVDLDPAVTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLPETF 370 (516)
T ss_pred CCCCCEEEEECCCCCHHHHHHHCCCCCCEEEEEECCHHHHHHHHHCCCHHHHHCCCCCCCCEEEEEHHHHHHHHHCCCCC
T ss_conf 99977389983776087999864899663789951889999998572144441232349964898537899998688878
Q ss_pred CCHHHHH--HHHHH---CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 2002202--47752---299999999998469998899973387740345653276656557888999999962876212
Q gi|254780582|r 97 DCVLMVH--YLEFA---EDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSI 171 (242)
Q Consensus 97 D~Vi~~h--~LE~~---~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~ 171 (242)
|+|++=- --+.. =-..++.+.+.+.|+|||.+++-.-.|..- . -+-..+.+-++.+||.+..
T Consensus 371 DvIi~D~pdP~~~~~~~LYs~eFY~~~~~~L~~~G~~v~qs~Sp~~~-----------~--~~f~~i~~T~~~~~~~~~~ 437 (516)
T PRK03612 371 DAIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA-----------P--KAFWSIEATLEAAGFATTP 437 (516)
T ss_pred CEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCC-----------C--HHHHHHHHHHHHHCCCCCC
T ss_conf 88998189979952246753999999998449995899936897552-----------2--0346899999983880413
Q ss_pred EEEEEEECCC
Q ss_conf 5789830865
Q gi|254780582|r 172 TSRSLFFPPT 181 (242)
Q Consensus 172 ~~~~~~~pp~ 181 (242)
|..+.|-+
T Consensus 438 --y~~~vpsf 445 (516)
T PRK03612 438 --YHVNVPSF 445 (516)
T ss_pred --CEECCCCC
T ss_conf --24558886
No 189
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=92.76 E-value=0.58 Score=25.58 Aligned_cols=149 Identities=16% Similarity=0.222 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC-CHHHHHHHC---CCCEEEEEECHHHHHHHHHCCCCC-EEEECHH
Q ss_conf 28898999999999999750104897599965388-111355312---387488730589998323116862-3653336
Q gi|254780582|r 13 SSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAI-PFFSCFHGK---VERTLAFMPAGQGATNWPDQYFSS-TALVSEG 87 (242)
Q Consensus 13 ~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~ 87 (242)
+.|+|..+.-.+.. +..|.++|-.|||. |++...-++ +..++..|++ +.-.+.++..... .+....|
T Consensus 145 qePlGNAVhTvL~~-------~~~G~~vlv~GaGPiGlma~AVAKa~GA~~Vi~~d~n-eyRleLAkk~Gat~~vn~~kE 216 (341)
T TIGR00692 145 QEPLGNAVHTVLES-------DLAGEDVLVIGAGPIGLMAVAVAKAAGARNVIVIDKN-EYRLELAKKMGATRVVNVAKE 216 (341)
T ss_pred HCCCCHHHHHHHCC-------CCCCCCEEEECCCHHHHHHHHHHHHHCCCEEEEECCC-HHHHHHHHHCCCCEEEECCCC
T ss_conf 15411044465257-------7688718998577478999999877278405996586-479999987098658701014
Q ss_pred HCC------CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCC---H-------HHHHHCCCCCCC
Q ss_conf 567------754720200220247752299999999998469998899973387740---3-------456532766565
Q gi|254780582|r 88 NLP------LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM---W-------ARMEHTPFGSGQ 151 (242)
Q Consensus 88 ~LP------f~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~---w-------~~~~~~~~~~~r 151 (242)
++- -..+-+|+ +||++..|.+ |+..-....+|||+-+++.-|... | ++.-+...++.=
T Consensus 217 d~~k~v~~lt~geG~Dv-----~lEmSGaP~A-~~~gL~~~~~gGR~~~Lglpp~~vtID~tNkviFKgLtI~GItGR~m 290 (341)
T TIGR00692 217 DLVKVVAELTSGEGVDV-----VLEMSGAPKA-LEQGLDAVANGGRVALLGLPPSDVTIDLTNKVIFKGLTIKGITGRKM 290 (341)
T ss_pred CHHHHHHHHCCCCCEEE-----EEECCCCCHH-HHHHHHHHCCCCEEEECCCCCCCEEEEECCCEEEEEEEEEEECCCCH
T ss_conf 76898884038896479-----9864899179-99999985068808981368976126303747886427720007504
Q ss_pred CCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 578889999999628762125789
Q gi|254780582|r 152 PYSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 152 ~~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
|-+.+++.++++..+.+..-+-+.
T Consensus 291 feTWy~vs~LiqS~~ldL~PiITH 314 (341)
T TIGR00692 291 FETWYKVSRLIQSNKLDLSPIITH 314 (341)
T ss_pred HHHHHHHHHHHCCCCCCCCCEEEC
T ss_conf 678999999842688356845540
No 190
>pfam10354 DUF2431 Domain of unknown function (DUF2431). This is the N-terminal domain of a family of proteins found from plants to humans. The function is not known.
Probab=92.61 E-value=0.52 Score=25.83 Aligned_cols=77 Identities=21% Similarity=0.291 Sum_probs=53.0
Q ss_pred ECHHHC----CCCCCCCCCHHHHHHH-------------HHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCC
Q ss_conf 333656----7754720200220247-------------75229999999999846999889997338774034565327
Q gi|254780582|r 84 VSEGNL----PLADSSVDCVLMVHYL-------------EFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTP 146 (242)
Q Consensus 84 ~d~~~L----Pf~~~sfD~Vi~~h~L-------------E~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~ 146 (242)
.|+..| ++....||.||...-. .|=.=-..+++.+..+|+|+|.+.|+...
T Consensus 60 VDAt~l~~~~~~~~~~fD~IiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~sa~~~l~~~G~i~vTl~~------------ 127 (166)
T pfam10354 60 VDATKLKKHFSLKKNRFDRIIFNFPHAGGKIKDSDRNIRLNRELLRGFFKNASELLKPGGEIHVTLKD------------ 127 (166)
T ss_pred EECCCCCCCCCCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC------------
T ss_conf 74453666844347835789987998888774125558999999999999999982799899999538------------
Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 66565578889999999628762125789
Q gi|254780582|r 147 FGSGQPYSWYQMISLLREANFTLSITSRS 175 (242)
Q Consensus 147 ~~~~r~~~~~~l~~~l~~~gf~~~~~~~~ 175 (242)
+.+|..+++..+.+.+|+.......+
T Consensus 128 ---g~py~~W~i~~lA~~~gl~l~~~~~F 153 (166)
T pfam10354 128 ---GEPYNSWNIEALAAEAGLKLEESVKF 153 (166)
T ss_pred ---CCCCCEECHHHHHHHCCCEEEEEECC
T ss_conf ---99987303889997479589887557
No 191
>KOG1122 consensus
Probab=92.36 E-value=0.87 Score=24.58 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=64.1
Q ss_pred HCCCCCCCEEEEECCCCCH----HHHHHHCCCCEEEEEECHHHHHHH----HHCCCCCEEEEC--HHHCC---CCCCCCC
Q ss_conf 5010489759996538811----135531238748873058999832----311686236533--36567---7547202
Q gi|254780582|r 31 TWDDVTGCRLLGLGYAIPF----FSCFHGKVERTLAFMPAGQGATNW----PDQYFSSTALVS--EGNLP---LADSSVD 97 (242)
Q Consensus 31 ~l~~~~g~~vLdiGcg~g~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~d--~~~LP---f~~~sfD 97 (242)
.+...+|.+|||.-+..|. .+.++.+.+..++.|.....+... .+.....++.++ ..++| |.. +||
T Consensus 236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fD 314 (460)
T KOG1122 236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFD 314 (460)
T ss_pred ECCCCCCCEECCHHCCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCC-CCC
T ss_conf 2079988711212107995077899987277469961354377999998899748774489736763255333676-423
Q ss_pred CHHH----------------------HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 0022----------------------02477522999999999984699988999733
Q gi|254780582|r 98 CVLM----------------------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 98 ~Vi~----------------------~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
.|++ ..++++..=..++|-.+-..++|||.|+-++=
T Consensus 315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122 315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 1453487777755545510133012999987279999999998731157708999853
No 192
>pfam08468 MTS_N Methyltransferase small domain N-terminal. This domain is found to the N-terminus of the methyltransferase small domain (pfam05175) in bacterial proteins.
Probab=92.31 E-value=0.88 Score=24.54 Aligned_cols=110 Identities=11% Similarity=0.006 Sum_probs=62.0
Q ss_pred HHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 99750104897599965388111355312-38748873058999832311686236533365677547202002202477
Q gi|254780582|r 28 LSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLE 106 (242)
Q Consensus 28 l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE 106 (242)
|.+..+...|.+||-+|.-...+...+.. ...+.+..-................. -..++|. +..||.||..-.=.
T Consensus 4 llR~~~~f~gk~VL~ag~~~D~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~-~~~~D~vi~y~PKa 80 (155)
T pfam08468 4 LLRHLELFEGKHVLFAGEIADDLPQQLATHCSSVHVWTWHFGYQLQLQAHNNIRFY--FGVEAPE-VADADLLIYYWPKA 80 (155)
T ss_pred HHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEEEEEHHHHHHHHHHCCCCCEE--EECCCCC-CCCCCEEEEECCCC
T ss_conf 51139987898089953864025899876337789976259999987614586487--6246787-67778899983787
Q ss_pred HHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHH
Q ss_conf 52299999999998469998899973387740345
Q gi|254780582|r 107 FAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR 141 (242)
Q Consensus 107 ~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~ 141 (242)
- +.-.-.|..+.-.|++||.++|++-|+.+.-+.
T Consensus 81 K-~e~~~lL~~l~s~l~~g~ei~vVGENr~GIkSa 114 (155)
T pfam08468 81 K-QEAEYLLNNLLSKLPIGTEIFIVGENRSGVRSA 114 (155)
T ss_pred H-HHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHH
T ss_conf 8-999999999997289997799996672307689
No 193
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.28 E-value=0.6 Score=25.47 Aligned_cols=151 Identities=16% Similarity=0.125 Sum_probs=82.9
Q ss_pred HHHHHH--HCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHH----HHC
Q ss_conf 899996--128898999999999999750104897599965388111355312---38748873058999832----311
Q gi|254780582|r 6 VELRQF--YSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNW----PDQ 76 (242)
Q Consensus 6 ~~l~~w--Y~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~----~~~ 76 (242)
.|++.| |+|.++..+. .-|. .++-..|.+||-+|+.+|-.....++ .+...+..-|+...... ...
T Consensus 49 ~eYR~Wnp~RSKLaAaIl----~Gl~-~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R 123 (231)
T COG1889 49 EEYREWNPRRSKLAAAIL----KGLK-NFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR 123 (231)
T ss_pred CCEEEECCCHHHHHHHHH----CCCC-CCCCCCCCEEEEEECCCCCCHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHC
T ss_conf 505656765137799997----3700-27769998789950367985767776047870899996444699999998747
Q ss_pred CCCCEEEECHH---HCCCCCCCCCCHHHHHHHHHHCCHHH---HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCC
Q ss_conf 68623653336---56775472020022024775229999---9999998469998899973387740345653276656
Q gi|254780582|r 77 YFSSTALVSEG---NLPLADSSVDCVLMVHYLEFAEDPFL---MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSG 150 (242)
Q Consensus 77 ~~~~~~~~d~~---~LPf~~~sfD~Vi~~h~LE~~~dp~~---~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~ 150 (242)
...-.++.|+. ..-+-=+.+|+|+.- +..|.| +.+.+..-|++||.++++.-.+ |. +.+-- .
T Consensus 124 ~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D-----VAQp~Qa~I~~~Na~~FLk~~G~~~i~iKAr-SI----dvT~d--p 191 (231)
T COG1889 124 PNIIPILEDARKPEKYRHLVEKVDVIYQD-----VAQPNQAEILADNAEFFLKKGGYVVIAIKAR-SI----DVTAD--P 191 (231)
T ss_pred CCCEEEECCCCCCHHHHHHCCCCCEEEEE-----CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEE-CC----CCCCC--H
T ss_conf 87400201368837765312454389983-----6881078999988997321697399999851-23----04589--8
Q ss_pred CCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 557888999999962876212578
Q gi|254780582|r 151 QPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 151 r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
. ---.+..+.|++.+|++...-.
T Consensus 192 ~-~vf~~ev~kL~~~~f~i~e~~~ 214 (231)
T COG1889 192 E-EVFKDEVEKLEEGGFEILEVVD 214 (231)
T ss_pred H-HHHHHHHHHHHHCCCEEEEEEC
T ss_conf 9-9999999999856950467763
No 194
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=92.24 E-value=0.9 Score=24.49 Aligned_cols=96 Identities=16% Similarity=0.149 Sum_probs=53.6
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHC---CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCC-----C-CCCCCCCHHHHH
Q ss_conf 04897599965388-111355312---3874887305899983231168623653336567-----7-547202002202
Q gi|254780582|r 34 DVTGCRLLGLGYAI-PFFSCFHGK---VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP-----L-ADSSVDCVLMVH 103 (242)
Q Consensus 34 ~~~g~~vLdiGcg~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LP-----f-~~~sfD~Vi~~h 103 (242)
...|+++|-+|+|. |.+...+.+ ....++.+.+...............+....+++. + ...-+|+|
T Consensus 161 ~~~g~~VlV~GaG~vGl~~~~~ak~~Ga~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~~~~~~~~~~t~~~G~Dvv---- 236 (341)
T PRK05396 161 DLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELGMTEGFDVG---- 236 (341)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEEECCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCCCCEEE----
T ss_conf 7788869998997543299999998499289999489999998986499499968850689999997489997699----
Q ss_pred HHHHHCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 47752299999999998469998899973387
Q gi|254780582|r 104 YLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 104 ~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
+|.+..+. .++++.+.++++|++++.+...
T Consensus 237 -id~~G~~~-~~~~~~~~l~~gG~vv~~G~~~ 266 (341)
T PRK05396 237 -LEMSGAPS-AFRQMLDAMNHGGRIAMLGIPP 266 (341)
T ss_pred -EECCCCHH-HHHHHHHHHHCCCEEEEEECCC
T ss_conf -98789899-9999999863598999995579
No 195
>PRK13168 rumA 23S rRNA 5-methyluridine methyltransferase; Reviewed
Probab=92.21 E-value=0.91 Score=24.47 Aligned_cols=150 Identities=16% Similarity=0.118 Sum_probs=74.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHC---C---CCCE
Q ss_conf 996128898999999999999750104897599965388111355312-38748873058999832311---6---8623
Q gi|254780582|r 9 RQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQ---Y---FSST 81 (242)
Q Consensus 9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~---~~~~ 81 (242)
.+||+.... ..+.+-+...++++...+.+|||+-||.|.+...++. ...+++++.+...+..+..+ + ....
T Consensus 269 ~sFfQvN~~--~ae~L~~~a~~~l~~~~~~~VlDLYcGvGtfsl~LA~~~~~V~gvE~~~~av~~A~~Na~~n~i~n~~f 346 (440)
T PRK13168 269 TDFIQVNAQ--VNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVPAMVERARENARRNGLDNVTF 346 (440)
T ss_pred CCEEEECHH--HHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEE
T ss_conf 987865999--999999999998526789889986238562111135306768876057999999999999749998789
Q ss_pred EEECHHH-C---CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHH
Q ss_conf 6533365-6---77547202002202477522999999999984699988999733877403456532766565578889
Q gi|254780582|r 82 ALVSEGN-L---PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQ 157 (242)
Q Consensus 82 ~~~d~~~-L---Pf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~ 157 (242)
+.+|.+. + +...+.+|+||+-=-=. . -..+++.+.+ ++|. +++-+.=||. +..|
T Consensus 347 ~~~d~~~~l~~~~~~~~~~D~vi~DPPR~--G-~~~~i~~l~~-~~p~-~IvYVSCnPa-----------------TlAR 404 (440)
T PRK13168 347 YHANLFEDFTDQPWAKGGFDKVLLDPPRA--G-AFEVMQALAK-LKPK-RIVYVSCNPA-----------------TLAR 404 (440)
T ss_pred EECCHHHHHHHHHHHCCCCCEEEECCCCC--C-HHHHHHHHHH-CCCC-EEEEECCCHH-----------------HHHH
T ss_conf 97464566355786379999899998852--7-8999999984-7989-7999938989-----------------9999
Q ss_pred HHHHHHHCCCCCEEEEEEEEECCCC
Q ss_conf 9999996287621257898308655
Q gi|254780582|r 158 MISLLREANFTLSITSRSLFFPPTH 182 (242)
Q Consensus 158 l~~~l~~~gf~~~~~~~~~~~pp~~ 182 (242)
=...|.+.||++....-+..||-..
T Consensus 405 Dl~~L~~~GY~l~~i~~vDmFP~T~ 429 (440)
T PRK13168 405 DAGVLVEAGYRLKRAGVLDMFPHTG 429 (440)
T ss_pred HHHHHHHCCCEEEEEEEEECCCCCC
T ss_conf 9999987894895999960699998
No 196
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=91.87 E-value=0.22 Score=27.97 Aligned_cols=39 Identities=3% Similarity=-0.222 Sum_probs=27.0
Q ss_pred CEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHC
Q ss_conf 759996538811135531-238748873058999832311
Q gi|254780582|r 38 CRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQ 76 (242)
Q Consensus 38 ~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 76 (242)
..|||++||.|.....++ ...+++++|.++..+...+++
T Consensus 2 ~ivlD~fcG~Ggn~I~fA~~~~~Vi~vDi~~~~l~~A~~N 41 (165)
T pfam09445 2 RIILDVFCGAGGNTIQFANVFCSVIGIDINPEHLACAQHN 41 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHH
T ss_conf 7999937780799999997589899997989999999998
No 197
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=91.82 E-value=0.92 Score=24.44 Aligned_cols=96 Identities=11% Similarity=0.036 Sum_probs=58.9
Q ss_pred CCCCCCCEEEEECCCCCH--HHHHHH--CCCCEEEEEECHHHHHHHHHCCCCCEEEEC-HHHCCCCCCCCCCHHHHHHHH
Q ss_conf 010489759996538811--135531--238748873058999832311686236533-365677547202002202477
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPF--FSCFHG--KVERTLAFMPAGQGATNWPDQYFSSTALVS-EGNLPLADSSVDCVLMVHYLE 106 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~LPf~~~sfD~Vi~~h~LE 106 (242)
+...+|++|+-+|+| |. ...... ...++++++-+..-.....+......+... .+..+--.+.||.|+..
T Consensus 162 ~~~~pG~~V~I~G~G-GlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t---- 236 (339)
T COG1064 162 ANVKPGKWVAVVGAG-GLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT---- 236 (339)
T ss_pred CCCCCCCEEEEECCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCEEEEC----
T ss_conf 389999899998774-899999999998699699995787799999984882899767811667767347399998----
Q ss_pred HHCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 52299999999998469998899973387
Q gi|254780582|r 107 FAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 107 ~~~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
+. ...+...-+.|++||++++++--.
T Consensus 237 -v~--~~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 237 -VG--PATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred -CC--HHHHHHHHHHHHCCCEEEEECCCC
T ss_conf -77--455999999864297899978888
No 198
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=91.77 E-value=0.49 Score=26.00 Aligned_cols=93 Identities=17% Similarity=0.152 Sum_probs=52.8
Q ss_pred CCCCCCCEEEEECCCC-CHHHHH-HHC--CCCEEEEEECHHHHHHHHHCCCCCEEEECHHH------CCCCCCCCCCHHH
Q ss_conf 0104897599965388-111355-312--38748873058999832311686236533365------6775472020022
Q gi|254780582|r 32 WDDVTGCRLLGLGYAI-PFFSCF-HGK--VERTLAFMPAGQGATNWPDQYFSSTALVSEGN------LPLADSSVDCVLM 101 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~-g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------LPf~~~sfD~Vi~ 101 (242)
.....|.++|-+|+|. |.+... +.. ...++..+.+........+. ...... +.++ .-.....+|+|+
T Consensus 116 ~~~~~g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~~rl~~a~~~-Ga~~~i-~~~~~~~~~~~~~~g~g~D~vi- 192 (280)
T TIGR03366 116 AGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF-GATALA-EPEVLAERQGGLQNGRGVDVAL- 192 (280)
T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHC-CCCEEE-CCCCHHHHHHHHHCCCCCCEEE-
T ss_conf 1789999899990786899999999984998799991998999999973-998983-7757799999972788870999-
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 0247752299999999998469998899973
Q gi|254780582|r 102 VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 102 ~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
|.+..+ ..++++-+.++|||++++++
T Consensus 193 ----e~~G~~-~~~~~a~~~l~~gG~iv~vG 218 (280)
T TIGR03366 193 ----EFSGAT-AAVRACLESLDVGGTAVLAG 218 (280)
T ss_pred ----ECCCCH-HHHHHHHHHHHCCCEEEEEC
T ss_conf ----878988-99999999860498999980
No 199
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=91.28 E-value=1.2 Score=23.87 Aligned_cols=116 Identities=14% Similarity=0.007 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHCCC--CCCCEEEEECCCCCHH-HHHHHCCCCEEE-EEECHHHHHHHHH-------CCCCCEEEECHHH
Q ss_conf 999999999975010--4897599965388111-355312387488-7305899983231-------1686236533365
Q gi|254780582|r 20 TTDAISKVLSTTWDD--VTGCRLLGLGYAIPFF-SCFHGKVERTLA-FMPAGQGATNWPD-------QYFSSTALVSEGN 88 (242)
Q Consensus 20 ~~~~~~~~l~~~l~~--~~g~~vLdiGcg~g~~-~~~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~~~~~~d~~~ 88 (242)
....+++.|..++.. ..|.++||+=+|+|-+ .+.++++..... ++-+......... ......+..|...
T Consensus 25 T~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~ 104 (187)
T COG0742 25 TTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104 (187)
T ss_pred CCHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECHHH
T ss_conf 71688899998734344579889994687647689998578856999965989999999999984876125998400899
Q ss_pred C-CCCCC--CCCCHHHHHHHH-HHCCHHHHHHH--HHHHCCCCCEEEEEECCC
Q ss_conf 6-77547--202002202477-52299999999--998469998899973387
Q gi|254780582|r 89 L-PLADS--SVDCVLMVHYLE-FAEDPFLMLHE--IWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 89 L-Pf~~~--sfD~Vi~~h~LE-~~~dp~~~L~E--i~RvLkPgG~lii~~~n~ 135 (242)
. +-... .||.|++==-.+ -.-++...+.. -..+|+|+|.+++-....
T Consensus 105 ~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~~~~ 157 (187)
T COG0742 105 ALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVVEHDKD 157 (187)
T ss_pred HHHHCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEECCC
T ss_conf 98722778851289968997536066899998887658778896899982787
No 200
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA; InterPro: IPR001566 This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA .; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing.
Probab=91.24 E-value=0.35 Score=26.86 Aligned_cols=153 Identities=12% Similarity=0.067 Sum_probs=96.7
Q ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHCCCCC-----
Q ss_conf 99996128898999999999999750104897599965388111355312-387488730589998323116862-----
Q gi|254780582|r 7 ELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQYFSS----- 80 (242)
Q Consensus 7 ~l~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----- 80 (242)
+.++||+-..|. .+.+-..+.+++....-++|||+=||-|-+...+++ ...+++++...+.+....++...+
T Consensus 267 saR~F~QVN~~~--~~~l~~~a~~~l~Lqg~e~V~DayCG~GtftLpLA~qak~v~G~E~v~e~v~~a~~NAe~Ng~~N~ 344 (434)
T TIGR00479 267 SARDFFQVNSEQ--TEKLVDRALEALELQGEEKVVDAYCGVGTFTLPLAKQAKSVVGVEVVPESVEDAKRNAELNGIANV 344 (434)
T ss_pred CCCCCEECCHHH--HHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCCH
T ss_conf 576502018767--799999999997159865578631575520044440121888871437678999888886035320
Q ss_pred -EEEECH----HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf -365333----656775472020022024775229999999999846999889997338774034565327665655788
Q gi|254780582|r 81 -TALVSE----GNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSW 155 (242)
Q Consensus 81 -~~~~d~----~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~ 155 (242)
...++. -.+|-+..+||.|++==.= ..=...+|++|-+ |||.=.++|+ =||..|
T Consensus 345 ~F~~g~~E~~~p~~~~e~~~~D~~llDPPR--~GCa~~~L~~I~~-~kP~rivYVS-CNP~TL----------------- 403 (434)
T TIGR00479 345 EFLAGTLETVLPKQPWEGISPDVVLLDPPR--KGCAAEVLRTIIK-LKPKRIVYVS-CNPATL----------------- 403 (434)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEEEECCCC--CCCHHHHHHHHHH-CCCEEEEEEE-CCCHHH-----------------
T ss_conf 133312321101442226778988888889--8745899998862-0770599984-485347-----------------
Q ss_pred HHHHHHHHHCC-CCCEEEEEEEEECCCC
Q ss_conf 89999999628-7621257898308655
Q gi|254780582|r 156 YQMISLLREAN-FTLSITSRSLFFPPTH 182 (242)
Q Consensus 156 ~~l~~~l~~~g-f~~~~~~~~~~~pp~~ 182 (242)
.+=.+.|...| |.+..+.-..+||-+.
T Consensus 404 ARDl~~L~~~GfY~i~~~q~~DmFPhT~ 431 (434)
T TIGR00479 404 ARDLEVLCKEGFYKIEKVQPVDMFPHTA 431 (434)
T ss_pred HHHHHHHHHCCCEEEEEEEEEECCCCCC
T ss_conf 9999999737962678885430578876
No 201
>PRK11760 putative RNA 2'-O-ribose methyltransferase; Provisional
Probab=90.71 E-value=0.76 Score=24.91 Aligned_cols=119 Identities=13% Similarity=-0.010 Sum_probs=65.5
Q ss_pred CCCCCEEEEECCCCCHHHHH-HHCCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCC--CCCCCCHHHHHHHHHHCC
Q ss_conf 04897599965388111355-312387488730589998323116862365333656775--472020022024775229
Q gi|254780582|r 34 DVTGCRLLGLGYAIPFFSCF-HGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLA--DSSVDCVLMVHYLEFAED 110 (242)
Q Consensus 34 ~~~g~~vLdiGcg~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~--~~sfD~Vi~~h~LE~~~d 110 (242)
...|.+.+|+|...|...-. ..+.-.+.++|.... ....-.......+..|.. -|. ...+|-+||=. ++.
T Consensus 208 l~~Gm~aVDLGAaPGGWT~qLv~rg~~V~AVDnG~m-~~~L~~~~~V~H~~~dgf--~f~P~~~~vdwlVCDm----vek 280 (356)
T PRK11760 208 LASGMRAVDLGACPGGWTYQLVRRGMFVTAVDNGPM-AESLMDTGQVEHLRADGF--KFRPTRKNVDWLVCDM----VEK 280 (356)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCCCEEEEECCCCC-CHHHHCCCCEEEEECCCE--EECCCCCCEEEEEEEC----CCC
T ss_conf 169975875586997058999977988998658767-875752887578814670--5636998520899705----368
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCC----CHHHHHHHHHHCCCCC
Q ss_conf 9999999998469998899973387740345653276656557----8889999999628762
Q gi|254780582|r 111 PFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPY----SWYQMISLLREANFTL 169 (242)
Q Consensus 111 p~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~----~~~~l~~~l~~~gf~~ 169 (242)
|..+.+-+.+.|..| ..=-.+||=--+ -..|+- ....+.+.|...|...
T Consensus 281 P~rva~lm~~Wl~~g-w~~~aifnLKLP---------MKkR~~eV~~~l~~i~~~l~~~g~~~ 333 (356)
T PRK11760 281 PARVAELMAQWLVNG-WCREAIFNLKLP---------MKKRYEEVRQCLERIEEQLDENGINF 333 (356)
T ss_pred HHHHHHHHHHHHHCC-CCHHEEEEECCC---------CCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 899999999987556-002057885167---------76639999999999999998648762
No 202
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=90.56 E-value=1.3 Score=23.48 Aligned_cols=92 Identities=20% Similarity=0.201 Sum_probs=49.9
Q ss_pred CCCCCCCEEEEECCCCC--HHHHHHHC--CCCEEEEEECHHHHHHHHHCCCCCEEEEC--HHHCCCCCCCCCCHHHHHHH
Q ss_conf 01048975999653881--11355312--38748873058999832311686236533--36567754720200220247
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIP--FFSCFHGK--VERTLAFMPAGQGATNWPDQYFSSTALVS--EGNLPLADSSVDCVLMVHYL 105 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~LPf~~~sfD~Vi~~h~L 105 (242)
....+|++||-.|++.| .....+.+ ...+++.+.+....... .......+..+ .+++. .-..+|+|+
T Consensus 158 ~~~~~g~~VlI~Ga~G~vG~~aiqlak~~Ga~vi~v~~~~~k~~~~-~~~~~~~i~~~~~~~~~~-~~~g~Dvvi----- 230 (332)
T PRK13771 158 AGVSEGETVLVTGAGGGVGIHAVQVAKAYGAKVIAVTTSESKAKAV-GKYADYVIVGSKFSEEVK-KLGGADIVI----- 230 (332)
T ss_pred HCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HHCCCEEEECCCHHHHHH-HCCCCCEEE-----
T ss_conf 1999999999977877589999999998699899994999999999-856998983630578887-346863898-----
Q ss_pred HHHCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 752299999999998469998899973
Q gi|254780582|r 106 EFAEDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 106 E~~~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
|.+..+ .+++..+.|+|+|++++.+
T Consensus 231 d~~G~~--~~~~~~~~l~~~G~iv~~G 255 (332)
T PRK13771 231 ETVGGP--TLEESLRSLNWGGKIVLIG 255 (332)
T ss_pred ECCCHH--HHHHHHHHHCCCCEEEEEE
T ss_conf 457668--8998888625896999993
No 203
>KOG2539 consensus
Probab=90.19 E-value=0.35 Score=26.83 Aligned_cols=115 Identities=13% Similarity=0.105 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCC--H-HHHHHHCC-CCEE-EEEECHHHHHHHHHCCCC-----CE----EEEC
Q ss_conf 99999999997501048975999653881--1-13553123-8748-873058999832311686-----23----6533
Q gi|254780582|r 20 TTDAISKVLSTTWDDVTGCRLLGLGYAIP--F-FSCFHGKV-ERTL-AFMPAGQGATNWPDQYFS-----ST----ALVS 85 (242)
Q Consensus 20 ~~~~~~~~l~~~l~~~~g~~vLdiGcg~g--~-~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~-----~~----~~~d 85 (242)
........+...-+...-..+.++|-|.| . ....+.+. ...+ .++.+..+.........+ .. .+..
T Consensus 184 ~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~ 263 (491)
T KOG2539 184 LVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFH 263 (491)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCHHHCCCHHCCCCCHH
T ss_conf 99989999851072117079999874315551035343002122067632555888888876247333275021553201
Q ss_pred HHHCCCCCCC-CCCHHHHHHHHHHCCHHH---HHHHHHH-HCCCCCEEEEEECC
Q ss_conf 3656775472-020022024775229999---9999998-46999889997338
Q gi|254780582|r 86 EGNLPLADSS-VDCVLMVHYLEFAEDPFL---MLHEIWR-VLTSGGRMIVVVPN 134 (242)
Q Consensus 86 ~~~LPf~~~s-fD~Vi~~h~LE~~~dp~~---~L~Ei~R-vLkPgG~lii~~~n 134 (242)
-.-+|..... +|+|+++|.|.+..++.. +.++.|| ..++||+++++..-
T Consensus 264 r~~~pi~~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539 264 RQRLPIDIKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred CCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 012788855532368866343014782046563699998606877417998558
No 204
>pfam03492 Methyltransf_7 SAM dependent carboxyl methyltransferase. This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine.
Probab=89.62 E-value=1.1 Score=24.04 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=53.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHC-C-----------------------HHH---------------HHHHHHHHCCCCCEEE
Q ss_conf 677547202002202477522-9-----------------------999---------------9999998469998899
Q gi|254780582|r 89 LPLADSSVDCVLMVHYLEFAE-D-----------------------PFL---------------MLHEIWRVLTSGGRMI 129 (242)
Q Consensus 89 LPf~~~sfD~Vi~~h~LE~~~-d-----------------------p~~---------------~L~Ei~RvLkPgG~li 129 (242)
==|+++|++.+.++..|++.. - |.. +|+-=.+=|+|||+++
T Consensus 98 RLfP~~Slh~~~Ss~slHWLS~vP~~l~~~~~~~~Nkg~I~i~~~s~~~V~~AY~~Qf~~D~~~FL~~Ra~Elv~GG~mv 177 (331)
T pfam03492 98 RLFPRNSLHFVHSSYSLHWLSQVPKGLEDKESPAWNKGNIYISGASPEEVYKAYLDQFKKDFSLFLRARAEELVSGGLMV 177 (331)
T ss_pred CCCCCCCEEEEEEHHHHHHHHHCCHHHHCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 55787645887532256776408700106787556788569716998899999999999999999998899854686599
Q ss_pred EEECCCCC----------CHHHHH-------------------HCCCCCCCCCCHHHHHHHHHHCC-CCCEEEEEEE
Q ss_conf 97338774----------034565-------------------32766565578889999999628-7621257898
Q gi|254780582|r 130 VVVPNKRG----------MWARME-------------------HTPFGSGQPYSWYQMISLLREAN-FTLSITSRSL 176 (242)
Q Consensus 130 i~~~n~~s----------~w~~~~-------------------~~~~~~~r~~~~~~l~~~l~~~g-f~~~~~~~~~ 176 (242)
++.+-+.+ .|.+.. .+.+.+. .+..+++......| |++++.+.+-
T Consensus 178 l~~~Gr~~~d~~~~~~~~~~~ll~~aL~dlv~eGlI~eekldsFNiP~Y~--ps~eEv~~~Ie~eGsF~I~~le~~~ 252 (331)
T pfam03492 178 LTFLGRPSVDPSETECGIFWDLLGDALNDLVSEGLIEEEKLDSFNIPIYA--PSPEEVKEIIEKEGSFTIERLEIIK 252 (331)
T ss_pred EEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCC--CCHHHHHHHHHHCCCEEEEEEEEEC
T ss_conf 99605689986656644399999999999998599679998324887607--9999999997106975656779851
No 205
>PRK13699 putative methylase; Provisional
Probab=89.39 E-value=0.34 Score=26.92 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHCCCCCEEEEE
Q ss_conf 999999999846999889997
Q gi|254780582|r 111 PFLMLHEIWRVLTSGGRMIVV 131 (242)
Q Consensus 111 p~~~L~Ei~RvLkPgG~lii~ 131 (242)
-...+.|+.|||||+|.+++.
T Consensus 51 ~~~~~~e~~Rvlk~~g~~~~~ 71 (227)
T PRK13699 51 LQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred HHHHHHHHHHHHCCCCEEEEE
T ss_conf 999999999995688169999
No 206
>KOG2920 consensus
Probab=89.02 E-value=0.39 Score=26.56 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=17.5
Q ss_pred CCCCCEEEEECCCCCHHHHHHHC
Q ss_conf 04897599965388111355312
Q gi|254780582|r 34 DVTGCRLLGLGYAIPFFSCFHGK 56 (242)
Q Consensus 34 ~~~g~~vLdiGcg~g~~~~~~~~ 56 (242)
...|++|||+|||.+....+...
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~ 136 (282)
T KOG2920 114 SFSGKRVLELGCGAALPGIFAFV 136 (282)
T ss_pred EECCCEEEECCCCCCCCCHHHHH
T ss_conf 74475568637864564166664
No 207
>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=88.99 E-value=1.8 Score=22.76 Aligned_cols=136 Identities=11% Similarity=0.047 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCC-CHHHHHHHC-CCC---EEEEEECHHHHHHHH---HCC----C-CCEEEECHH
Q ss_conf 999999999750104897599965388-111355312-387---488730589998323---116----8-623653336
Q gi|254780582|r 21 TDAISKVLSTTWDDVTGCRLLGLGYAI-PFFSCFHGK-VER---TLAFMPAGQGATNWP---DQY----F-SSTALVSEG 87 (242)
Q Consensus 21 ~~~~~~~l~~~l~~~~g~~vLdiGcg~-g~~~~~~~~-~~~---~~~~~~~~~~~~~~~---~~~----~-~~~~~~d~~ 87 (242)
.+.|-..+....... -.+|.-||||. |.-+..+.. ... ...+|.++....... ... . -..+.+|..
T Consensus 107 ~~lE~~~l~~~~~~~-p~~vAFIGSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~ 185 (277)
T pfam03059 107 SKLEFDLLSQHVTGV-PSRIAFIGSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVL 185 (277)
T ss_pred HHHHHHHHHCCCCCC-CCEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCC
T ss_conf 999987762157899-7448996378861389999885088731433127889999999999865530047289952644
Q ss_pred HCCCCCCCCCCHHHHHHH-HHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 567754720200220247-7522999999999984699988999733877403456532766565578889999999628
Q gi|254780582|r 88 NLPLADSSVDCVLMVHYL-EFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREAN 166 (242)
Q Consensus 88 ~LPf~~~sfD~Vi~~h~L-E~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~g 166 (242)
+...+-..||+|++.--. ---++-.++++.+.++++||..+++- |-||.+... |..-...+ ..|
T Consensus 186 ~~~~~l~~~DvV~lAALVGm~~e~K~~I~~hL~k~m~~Ga~l~~R-----sa~GlR~~L-------Yp~vd~~~---~~G 250 (277)
T pfam03059 186 DVTTELKAYDVVFLAALVGMDKEEKAKVIDHLGKHMAPGALLVLR-----SAHGARAFL-------YPVVDPCD---LRG 250 (277)
T ss_pred CCCCCCCCCCEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCEEEEE-----CCHHHHHHC-------CCCCCHHH---CCC
T ss_conf 444444547689872113543335999999999745899679996-----112178762-------88789667---387
Q ss_pred CCCEEE
Q ss_conf 762125
Q gi|254780582|r 167 FTLSIT 172 (242)
Q Consensus 167 f~~~~~ 172 (242)
|++...
T Consensus 251 Fe~l~~ 256 (277)
T pfam03059 251 FEVLSV 256 (277)
T ss_pred CEEEEE
T ss_conf 079999
No 208
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=88.18 E-value=2 Score=22.44 Aligned_cols=151 Identities=14% Similarity=0.095 Sum_probs=81.3
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHC---CCC---CE
Q ss_conf 99612889899999999999975010489759996538811135531-238748873058999832311---686---23
Q gi|254780582|r 9 RQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQ---YFS---ST 81 (242)
Q Consensus 9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~---~~ 81 (242)
.+||+.... +.+...+...+++....+.+++|+=||.|.+...++ ....+.+.+.+...+..+..+ +.. ..
T Consensus 268 ~sF~Q~N~~--~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f 345 (432)
T COG2265 268 RSFFQVNPA--VAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEF 345 (432)
T ss_pred CCCEEECHH--HHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEE
T ss_conf 974133999--999999999999743699779993558870135531246579999648999999999999739887799
Q ss_pred EEECHHHCCCCC---CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHH
Q ss_conf 653336567754---72020022024775229999999999846999889997338774034565327665655788899
Q gi|254780582|r 82 ALVSEGNLPLAD---SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQM 158 (242)
Q Consensus 82 ~~~d~~~LPf~~---~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l 158 (242)
+.++.+...-.. ..+|.|+.-=-= ..=...+++++.+ ++|...++|+ =|| -+-.+=
T Consensus 346 ~~~~ae~~~~~~~~~~~~d~VvvDPPR--~G~~~~~lk~l~~-~~p~~IvYVS-CNP-----------------~TlaRD 404 (432)
T COG2265 346 IAGDAEEFTPAWWEGYKPDVVVVDPPR--AGADREVLKQLAK-LKPKRIVYVS-CNP-----------------ATLARD 404 (432)
T ss_pred EECCHHHHHHHHCCCCCCCEEEECCCC--CCCCHHHHHHHHH-CCCCCEEEEE-CCH-----------------HHHHHH
T ss_conf 958688886510025799989989999--9999899999985-5898689997-687-----------------888989
Q ss_pred HHHHHHCCCCCEEEEEEEEECCCC
Q ss_conf 999996287621257898308655
Q gi|254780582|r 159 ISLLREANFTLSITSRSLFFPPTH 182 (242)
Q Consensus 159 ~~~l~~~gf~~~~~~~~~~~pp~~ 182 (242)
...|...||++++..-+..||...
T Consensus 405 l~~L~~~gy~i~~v~~~DmFP~T~ 428 (432)
T COG2265 405 LAILASTGYEIERVQPFDMFPHTH 428 (432)
T ss_pred HHHHHHCCEEEEEEEEEECCCCCC
T ss_conf 999985790487876671179966
No 209
>pfam06859 Bin3 Bicoid-interacting protein 3 (Bin3). This family represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation. Note that family members contain a conserved HLN motif.
Probab=87.44 E-value=0.32 Score=27.01 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHC------CHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCC-----CCCCCCCHHHHHHHHH
Q ss_conf 202002202477522------99999999998469998899973387740345653276-----6565578889999999
Q gi|254780582|r 95 SVDCVLMVHYLEFAE------DPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF-----GSGQPYSWYQMISLLR 163 (242)
Q Consensus 95 sfD~Vi~~h~LE~~~------dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~-----~~~r~~~~~~l~~~l~ 163 (242)
.||+|+|..+.-++. --..+++.+++.|+|||.+++ .|-||......++..- ...-.+.+.+..+.|.
T Consensus 1 ~fD~i~clSvtkWIHLN~GD~Gl~~~f~~~~~~l~pgg~lil-EpQ~w~sY~k~kkl~~~~~~ny~~I~~rPd~F~~yLl 79 (110)
T pfam06859 1 EFDVILCLSVTKWVHLNWGDEGLKRFFRRIYRLLRPGGILIL-EPQPWDSYKKRKKLSETIYKNYERIKLKPDQFEEYLL 79 (110)
T ss_pred CCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEE-ECCCCHHHHHHHHCCHHHHHHHHHHEECHHHHHHHHH
T ss_conf 965899966202455546428899999999996188988999-6788466887731479998535542778788899980
Q ss_pred H--CCCCCEE
Q ss_conf 6--2876212
Q gi|254780582|r 164 E--ANFTLSI 171 (242)
Q Consensus 164 ~--~gf~~~~ 171 (242)
. .||.-.+
T Consensus 80 ~~evGF~s~e 89 (110)
T pfam06859 80 SPEVGFSSYE 89 (110)
T ss_pred CCCCCEEEEE
T ss_conf 5466807899
No 210
>pfam04816 DUF633 Family of unknown function (DUF633). This family of proteins are uncharacterized have no known function.
Probab=87.28 E-value=2.3 Score=22.13 Aligned_cols=109 Identities=12% Similarity=0.046 Sum_probs=61.9
Q ss_pred EEEECCCCCHHHHHHHCC---CCEEEEEECHHHHHHHHHCC---C-C---CEEEECHHHCCCCC-CCCCCHHHHH-HHHH
Q ss_conf 999653881113553123---87488730589998323116---8-6---23653336567754-7202002202-4775
Q gi|254780582|r 40 LLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQY---F-S---STALVSEGNLPLAD-SSVDCVLMVH-YLEF 107 (242)
Q Consensus 40 vLdiGcg~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~-~---~~~~~d~~~LPf~~-~sfD~Vi~~h-~LE~ 107 (242)
+.||||-.||+..++... ...++.|.+...+..+...- . . ...++|.-+ +++. +.+|+|+... .=+
T Consensus 1 vADIGtDHayLpi~L~~~g~~~~aiA~Dv~~gPl~~A~~~i~~~gl~~~I~~rlgdGL~-~l~~~e~vd~ivIAGMGG~- 78 (204)
T pfam04816 1 LADIGSDHAYLPIYLVKNNLASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLA-VIEELDLIDVIVIAGMGGT- 78 (204)
T ss_pred CCEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEECCCHH-CCCCCCCCCEEEEECCCHH-
T ss_conf 97105450899999997799877999616674999999999975997538999778422-0586776577999486899-
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEE
Q ss_conf 2299999999998469998899973387740345653276656557888999999962876212
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSI 171 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~ 171 (242)
--...|++-..+++.--+|| .-||. ....++.||.+.||.+..
T Consensus 79 --lI~~IL~~~~~~~~~~~~lI-LQP~~------------------~~~~lR~~L~~~g~~I~~ 121 (204)
T pfam04816 79 --LIADILEQGKNKLAGVKRLI-LQPNI------------------NEEELREWLSQNSWQIKA 121 (204)
T ss_pred --HHHHHHHHCHHHHCCCCEEE-EECCC------------------CHHHHHHHHHHCCCEEEE
T ss_conf --99999981845535757799-95797------------------859999999988997888
No 211
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=87.20 E-value=2.4 Score=22.10 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=53.0
Q ss_pred CCCCCCCEEEEECCCC-CHHHHHHHC-CC--CEEEEEECHHHHHHHHHCCCCCEEEECHHHCC-------CCCCCCCCHH
Q ss_conf 0104897599965388-111355312-38--74887305899983231168623653336567-------7547202002
Q gi|254780582|r 32 WDDVTGCRLLGLGYAI-PFFSCFHGK-VE--RTLAFMPAGQGATNWPDQYFSSTALVSEGNLP-------LADSSVDCVL 100 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~-g~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LP-------f~~~sfD~Vi 100 (242)
.....|+++|-+|+|. |.+...+.+ .+ .+++.+.+.+......+ ..... ..|..+.. .....+|.|
T Consensus 156 ~~~~~g~~vlV~GaG~vGl~aiq~ak~~Ga~~V~~~d~~~~kl~~a~~-lGAd~-~i~~~~~~~~~~~~~~~~~~~d~v- 232 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-LGAMQ-TFNSREMSAPQIQSVLRELRFDQL- 232 (347)
T ss_pred CCCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHH-CCCCE-EECCCCCCHHHHHHHHCCCCCCEE-
T ss_conf 058889869998998389999999998599769999289999999997-29989-986887799999998629988869-
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 202477522999999999984699988999733
Q gi|254780582|r 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 101 ~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
++|.+..+ ..++.+.++++|+|++++.+.
T Consensus 233 ---vid~~G~~-~~~~~a~~~~~~~G~iv~~G~ 261 (347)
T PRK10309 233 ---ILETAGVP-QTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred ---EEECCCCH-HHHHHHHHHHCCCEEEEEEEC
T ss_conf ---99799998-999999996189749999805
No 212
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=86.85 E-value=2.5 Score=21.99 Aligned_cols=134 Identities=13% Similarity=0.067 Sum_probs=74.6
Q ss_pred CCCCCEEEEECCCC-CHHHHHHHC---CCCEEEEEECHHHHHHHHHCCCCCEEEECHHH------CCCCC-CCCCCHHHH
Q ss_conf 04897599965388-111355312---38748873058999832311686236533365------67754-720200220
Q gi|254780582|r 34 DVTGCRLLGLGYAI-PFFSCFHGK---VERTLAFMPAGQGATNWPDQYFSSTALVSEGN------LPLAD-SSVDCVLMV 102 (242)
Q Consensus 34 ~~~g~~vLdiGcg~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~------LPf~~-~sfD~Vi~~ 102 (242)
...+.+++-+|||. |++.....+ ....+..+.+...+..+........+.-..++ +.... .-+|+++=
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie- 244 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIE- 244 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCEEEE-
T ss_conf 7889989998888999999999987698279997999899999998779718724630147889998608987999999-
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCC-----HHHHHH--CCCCC---CCCCCHHHHHHHHHHCCCCCEEE
Q ss_conf 247752299999999998469998899973387740-----345653--27665---65578889999999628762125
Q gi|254780582|r 103 HYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM-----WARMEH--TPFGS---GQPYSWYQMISLLREANFTLSIT 172 (242)
Q Consensus 103 h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~-----w~~~~~--~~~~~---~r~~~~~~l~~~l~~~gf~~~~~ 172 (242)
.+.. ..+++.+-+.++|+|++++.+...... +....+ ...+. .......++.+++...-+.....
T Consensus 245 ----~~G~-~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~g~~~~~~~~~~~~~~~ll~~g~i~~~~l 319 (350)
T COG1063 245 ----AVGS-PPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDPEKL 319 (350)
T ss_pred ----CCCC-HHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHH
T ss_conf ----9899-79999999960259899999515886665688899753508973456656401999999998599880773
Q ss_pred E
Q ss_conf 7
Q gi|254780582|r 173 S 173 (242)
Q Consensus 173 ~ 173 (242)
-
T Consensus 320 i 320 (350)
T COG1063 320 I 320 (350)
T ss_pred C
T ss_conf 0
No 213
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein; InterPro: IPR014182 Members of this entry form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases. Some current members of this entry carry designations as putative alginate lyase, however none have been characterised as such..
Probab=86.70 E-value=2.5 Score=21.94 Aligned_cols=166 Identities=13% Similarity=0.051 Sum_probs=85.5
Q ss_pred HHHHHHHHHHCCC-CCCCEEEEECCCCCH--HHHHHHCC--CCEEEEEECHHHHHHHHHCCCCCEEEEC-------HHHC
Q ss_conf 9999999975010-489759996538811--13553123--8748873058999832311686236533-------3656
Q gi|254780582|r 22 DAISKVLSTTWDD-VTGCRLLGLGYAIPF--FSCFHGKV--ERTLAFMPAGQGATNWPDQYFSSTALVS-------EGNL 89 (242)
Q Consensus 22 ~~~~~~l~~~l~~-~~g~~vLdiGcg~g~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------~~~L 89 (242)
+.+.++|.=.-+. ..+..+|=+|.+.|- ..-.+.+. +-.+...-|...-..|-...+.+.++-+ .++|
T Consensus 135 ElLFDRL~~~~~~~~~~~~lLIiGgAGGVGSI~iQLAR~LT~ltVIaTASRpEs~~Wv~~LGAH~VIDHskPL~~ql~~L 214 (338)
T TIGR02817 135 ELLFDRLGINDPVAGAKRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELGAHHVIDHSKPLKAQLEKL 214 (338)
T ss_pred HHHHHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf 99886615897688888747897388517899999999854964999728578999999739918865884368999982
Q ss_pred CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEE-CCCCCCHHHHHHCCC-----CCCC--CCCH-----H
Q ss_conf 7754720200220247752299999999998469998899973-387740345653276-----6565--5788-----8
Q gi|254780582|r 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV-PNKRGMWARMEHTPF-----GSGQ--PYSW-----Y 156 (242)
Q Consensus 90 Pf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~-~n~~s~w~~~~~~~~-----~~~r--~~~~-----~ 156 (242)
-++ +.|.|++.. +..+-+.|+..+|+|.|+|-++= |..+..--+..+..- -+.| |-+. +
T Consensus 215 ~l~--~v~~V~SlT------~TDqH~~~ive~laPQGrlaLIDDP~~LD~~~lK~KSiSlHWE~MfTRS~f~T~Dmi~QH 286 (338)
T TIGR02817 215 GLE--AVSYVFSLT------HTDQHFKEIVELLAPQGRLALIDDPAELDVSPLKRKSISLHWEFMFTRSMFQTEDMIEQH 286 (338)
T ss_pred CCC--CCCEEECCC------HHHHHHHHHHHHHCCCCCEECCCCCCCCCHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHH
T ss_conf 889--985575166------078999999998567874000028700163132101302112455417766746699999
Q ss_pred HHH-HHHHHCCCCCEEEEEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 999-999962876212578983086552467631589999
Q gi|254780582|r 157 QMI-SLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEK 195 (242)
Q Consensus 157 ~l~-~~l~~~gf~~~~~~~~~~~pp~~~~~~~~~~~~~e~ 195 (242)
+|. +.-++-+==+.+..-.-.+=.++-..+.|.-.++|.
T Consensus 287 ~LLn~VA~LvD~G~irTTl~e~~G~INAanLkrAHaliEs 326 (338)
T TIGR02817 287 ELLNRVARLVDAGKIRTTLAETFGAINAANLKRAHALIES 326 (338)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHCC
T ss_conf 9999998886498465311034785466889999864207
No 214
>KOG2187 consensus
Probab=86.44 E-value=2.4 Score=22.08 Aligned_cols=64 Identities=8% Similarity=0.039 Sum_probs=43.9
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHH
Q ss_conf 99612889899999999999975010489759996538811135531-2387488730589998323
Q gi|254780582|r 9 RQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWP 74 (242)
Q Consensus 9 ~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~ 74 (242)
.+||++.- ..++.+-..+.+++....+..+||+=||+|.+...++ ...+++++..+++.+..+.
T Consensus 358 ~AFFQ~Nt--~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187 358 GAFFQTNT--SAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE 422 (534)
T ss_pred CHHHCCCC--HHHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEHHHHCCCCCEEEEECCHHHCCHHH
T ss_conf 31411470--888999999999708998847998630688400001026661210233845444355
No 215
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=86.14 E-value=2.7 Score=21.77 Aligned_cols=93 Identities=14% Similarity=0.128 Sum_probs=61.0
Q ss_pred CCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHHC------CCCCEEEECHHHCCCCCCCCCCHHHHH--HH
Q ss_conf 4897599965388111355312-38748873058999832311------686236533365677547202002202--47
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPDQ------YFSSTALVSEGNLPLADSSVDCVLMVH--YL 105 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~d~~~LPf~~~sfD~Vi~~h--~L 105 (242)
......-|+|.|+|.++...+. +.+++++.-++..+....++ .....+.+|+...-| +.-|+|+|-. +.
T Consensus 31 va~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 31 VAEDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred HHHHCEEECCCCCCHHHHHHHHHHCEEEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCC--CCCCEEHHHHHHHH
T ss_conf 8641056346886328898875320278874180787776505777887646898055321332--34534087776677
Q ss_pred HHHCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 752299999999998469998899
Q gi|254780582|r 106 EFAEDPFLMLHEIWRVLTSGGRMI 129 (242)
Q Consensus 106 E~~~dp~~~L~Ei~RvLkPgG~li 129 (242)
=..+....+++.+-.-|+-+|.++
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred HHCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 633421289999999863388252
No 216
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.89 E-value=1.8 Score=22.71 Aligned_cols=98 Identities=10% Similarity=-0.010 Sum_probs=52.5
Q ss_pred CCCCCCEEEEECCCC-CHHHHHHHC--CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCC-----------CCCCCC
Q ss_conf 104897599965388-111355312--387488730589998323116862365333656775-----------472020
Q gi|254780582|r 33 DDVTGCRLLGLGYAI-PFFSCFHGK--VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLA-----------DSSVDC 98 (242)
Q Consensus 33 ~~~~g~~vLdiGcg~-g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~-----------~~sfD~ 98 (242)
.-.+|++++-+|||. |.+.....+ ...+++++.+........+. ... ...+..+...+ ..-+|.
T Consensus 163 ~v~~g~~V~V~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~~rle~a~~~-Ga~-~~i~~~~~~~~~~~~~~~~~~~~~G~~~ 240 (349)
T TIGR03201 163 GLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF-GAD-LTLNPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCC-EEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 78999889998974899999999998599799994999999999964-998-9987876778999999975414567565
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 022024775229999999999846999889997338
Q gi|254780582|r 99 VLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 99 Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
.- ..++|.+..+ ..++.+.+.+++||++++.+..
T Consensus 241 ~~-~~v~e~~G~~-~~~~~a~~~~~~gG~iv~vG~~ 274 (349)
T TIGR03201 241 TG-WKIFECSGSK-PGQESALSLLSHGGTLVVVGYT 274 (349)
T ss_pred CC-CEEEEECCCH-HHHHHHHHHCCCCCEEEEECCC
T ss_conf 56-3699824888-9999999973589799997505
No 217
>KOG3115 consensus
Probab=85.53 E-value=1.8 Score=22.72 Aligned_cols=96 Identities=10% Similarity=0.063 Sum_probs=46.9
Q ss_pred CEEEEECCCCCHHHHHHHCCCCE---EEEEE---CHHHHH----HHH---HCCCCC-EEEECHHHCCCCCCCCCCHHHHH
Q ss_conf 75999653881113553123874---88730---589998----323---116862-36533365677547202002202
Q gi|254780582|r 38 CRLLGLGYAIPFFSCFHGKVERT---LAFMP---AGQGAT----NWP---DQYFSS-TALVSEGNLPLADSSVDCVLMVH 103 (242)
Q Consensus 38 ~~vLdiGcg~g~~~~~~~~~~~~---~~~~~---~~~~~~----~~~---~~~~~~-~~~~d~~~LPf~~~sfD~Vi~~h 103 (242)
-...|||||.|-+...++..+.. +++.. .++.+. ..+ +..... ..+.....+-|-.+.|..=.++-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred CEEEEECCCCCCHHHHCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHCCCHHHHCCCCC
T ss_conf 42786046765010120546863012200126888899999999975265433456530342120220510343123344
Q ss_pred HHHHHCCHH-------------HHHHHHHHHCCCCCEEEEEEC
Q ss_conf 477522999-------------999999984699988999733
Q gi|254780582|r 104 YLEFAEDPF-------------LMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 104 ~LE~~~dp~-------------~~L~Ei~RvLkPgG~lii~~~ 133 (242)
..-..+||| ..+.|..=+|++||.++.+.-
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitD 184 (249)
T KOG3115 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITD 184 (249)
T ss_pred CEEECCCHHHHHHHCCCEEECHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 4032588057665212101203479877742213844899700
No 218
>pfam07091 FmrO Ribosomal RNA methyltransferase (FmrO). This family consists of several bacterial ribosomal RNA methyltransferase (aminoglycoside-resistance methyltransferase) proteins.
Probab=84.81 E-value=3.1 Score=21.39 Aligned_cols=129 Identities=12% Similarity=0.044 Sum_probs=70.6
Q ss_pred CCCEEEEECCCC-CHHHHHH--HCCCCEEEEEECHHHHHHHHH-----CCCCCEEEECHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 897599965388-1113553--123874887305899983231-----16862365333656775472020022024775
Q gi|254780582|r 36 TGCRLLGLGYAI-PFFSCFH--GKVERTLAFMPAGQGATNWPD-----QYFSSTALVSEGNLPLADSSVDCVLMVHYLEF 107 (242)
Q Consensus 36 ~g~~vLdiGcg~-g~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~ 107 (242)
.-.+|+|+|||. ++-...+ ......++.|.+...+.-... .-.....+.|...-| +..+.|+.++.-+|..
T Consensus 102 ~p~sVlDlaCGlNPLa~pwm~~~~~~~Y~a~DId~~~i~fi~~~l~~l~v~~~~~~~Dl~~~~-p~~~~DvaLllK~lp~ 180 (248)
T pfam07091 102 PPRSVLDLACGLNPLAVPWMPLAPDATYHAYDIDRALIEFIRAFLALLGVPGEVRVRDLLTDP-PAEPADVALLLKTLPL 180 (248)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCEEEEEECCCC-CCCCCCCHHHHHHHHH
T ss_conf 986442000268830142336899867999707778999999999862987637987610479-9887340047552778
Q ss_pred HCCHHH--HHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 229999--999999846999889997338774034565327665655788899999996287621257
Q gi|254780582|r 108 AEDPFL--MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 108 ~~dp~~--~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
.+.... .++=+.++=.| +++++.|- .|+-|+... .... -...+..++...++.+++..
T Consensus 181 LE~q~~G~g~~ll~~l~~~--~vVVSFPt-rsLgGR~kG----m~~~-y~~~fe~~~~~r~~~~~~~~ 240 (248)
T pfam07091 181 LEQQRRGAGLDLLDALNAP--HVVVSFPT-RSLGGRSKG----MEAT-YSAWFEALVAGRGWIVDRLE 240 (248)
T ss_pred HHHHCCCCHHHHHHHHCCC--EEEEECCC-CCCCCCCCC----CCCC-HHHHHHHHCCCCCCEEEEEE
T ss_conf 9887026078999983798--38996564-122676664----4466-88999976036874345666
No 219
>pfam10237 N6-adenineMlase Probable N6-adenine methyltransferase. This is a protein of approximately 200 residues which is conserved from plants to humans. It contains a highly conserved QFW motif close to the N-terminus and a DPPF motif in the centre. The DPPF motif is characteristic of N-6 adenine-specific DNA methylases, and this family is found in eukaryotes.
Probab=83.44 E-value=3.6 Score=21.05 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=56.7
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH--HCCCCEEEEEECHHHHHHHHHCCCCCEEEE---
Q ss_conf 961288989999999999997501048975999653881113553--123874887305899983231168623653---
Q gi|254780582|r 10 QFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFH--GKVERTLAFMPAGQGATNWPDQYFSSTALV--- 84 (242)
Q Consensus 10 ~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 84 (242)
=||+..-...+.+.+ .+. ...|.+|.-+.|.+-+..... .....+..++-+..-.. .+...+.-
T Consensus 5 FWYs~~Ta~~La~~~----~~~--~~~~~~IA~lS~PSly~~l~~~~~~~~~v~LfEyD~RF~~-----~~~~FvfYDyn 73 (161)
T pfam10237 5 FWYSDETAEKLAKAL----LEG--ADEGTVIACVSAPSVYAALKERPIPTKNVYLLEYDKRFAV-----YGGEFVFYDYN 73 (161)
T ss_pred CCCCHHHHHHHHHHH----HHH--CCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEECHHHHH-----CCCCEEECCCC
T ss_conf 307878999999999----973--6899879998586899999843488773799654305876-----79941677789
Q ss_pred CHHHCC--CCCCCCCCHHHHHHHHHHCC-HHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 336567--75472020022024775229-999999999846999889997338
Q gi|254780582|r 85 SEGNLP--LADSSVDCVLMVHYLEFAED-PFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 85 d~~~LP--f~~~sfD~Vi~~h~LE~~~d-p~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
.++++| + .++||+||+==-. .+++ ....-.-+.-.+||+|+++++.--
T Consensus 74 ~P~~lp~~l-~~~fD~vi~DPPF-Lseec~~K~a~t~~~L~k~~~kli~~Tg~ 124 (161)
T pfam10237 74 KPLELPEQL-KGKFDRVIADPPF-LSEECLTKTAITIKLLLKPDSKLLLCTGE 124 (161)
T ss_pred CCCCCHHHH-HCCCCEEEECCCC-CCHHHHHHHHHHHHHHHCCCCEEEEECHH
T ss_conf 801087997-0867889989999-89999999999999980899879993489
No 220
>KOG2793 consensus
Probab=82.85 E-value=3.4 Score=21.16 Aligned_cols=100 Identities=13% Similarity=0.113 Sum_probs=56.3
Q ss_pred CCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHHHHHHHH---------CCCC-CE---EE--ECHHHCCCCCCC-CCCH
Q ss_conf 97599965388111355312-3874887305899983231---------1686-23---65--333656775472-0200
Q gi|254780582|r 37 GCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQGATNWPD---------QYFS-ST---AL--VSEGNLPLADSS-VDCV 99 (242)
Q Consensus 37 g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------~~~~-~~---~~--~d~~~LPf~~~s-fD~V 99 (242)
..++|++|.|+|.-....+. ....+...+.+.-+..... .... .. .+ ++....-+--.. ||++
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHCCCCCCCEE
T ss_conf 40589966875589999998736645127750267888886656566664037823699874688655755268765579
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 2202477522999999999984699988999733877
Q gi|254780582|r 100 LMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 100 i~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
+.+.+.-+-+.+..++.-+.-.|.-+|.+++..+-+.
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~~lr~ 203 (248)
T KOG2793 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAYPLRR 203 (248)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 9853055177614699999999743884899986002
No 221
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=82.68 E-value=3.2 Score=21.37 Aligned_cols=71 Identities=17% Similarity=0.276 Sum_probs=43.7
Q ss_pred CCEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHH
Q ss_conf 62365333656775472020022024775229999999999846999889997338774034565327665655788899
Q gi|254780582|r 79 SSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQM 158 (242)
Q Consensus 79 ~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l 158 (242)
...+.-+...||=.|.++ + -..+....+|+.+...|+|||.+.++.-. +.-+. .-....+
T Consensus 47 i~~~~FNLGYLPggDk~i--~------T~~~tTi~Al~~al~lL~~gG~i~i~~Y~--GH~gG----------~eE~~aV 106 (140)
T pfam06962 47 VKAAIFNLGYLPGGDKSI--T------TKPDTTLEAIKKLLELLKPGGLIILVIYH--GHEEG----------KKEKDAV 106 (140)
T ss_pred CCEEEEECCCCCCCCCCC--E------ECCHHHHHHHHHHHHHHCCCCEEEEEEEC--CCCCC----------HHHHHHH
T ss_conf 668999667688999875--8------77720999999999963669899999979--99987----------9999999
Q ss_pred HHHHHHCCCCC
Q ss_conf 99999628762
Q gi|254780582|r 159 ISLLREANFTL 169 (242)
Q Consensus 159 ~~~l~~~gf~~ 169 (242)
.+|++.+.-+-
T Consensus 107 ~~~~~~L~~~~ 117 (140)
T pfam06962 107 LDFVSNLDQKK 117 (140)
T ss_pred HHHHHHCCHHH
T ss_conf 99998489605
No 222
>PRK09422 alcohol dehydrogenase; Provisional
Probab=81.77 E-value=4.2 Score=20.68 Aligned_cols=96 Identities=8% Similarity=-0.028 Sum_probs=51.1
Q ss_pred CCCCCCCEEEEECCCC-CHHHHHHHC---CCCEEEEEECHHHHHHHHHCCCCCEEEE--CHH----HCCCCCCCCCCHHH
Q ss_conf 0104897599965388-111355312---3874887305899983231168623653--336----56775472020022
Q gi|254780582|r 32 WDDVTGCRLLGLGYAI-PFFSCFHGK---VERTLAFMPAGQGATNWPDQYFSSTALV--SEG----NLPLADSSVDCVLM 101 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~-g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~----~LPf~~~sfD~Vi~ 101 (242)
..-..|+++|-+|+|. |.+...+.. ..++++.+.+........+. ....+.- +.+ .+....+.+|.++.
T Consensus 158 ~~~~~G~~VlV~GaGgvG~~aiq~ak~~~g~~Vi~~~~~~~k~~~a~~l-Gad~vi~~~~~~~~~~~~~~~~gg~~~~v~ 236 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEV-GADLTINSKRVEDVAKIIQEKTGGAHAAVV 236 (338)
T ss_pred HCCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCCEEECCCCCCCHHHHHHHHCCCCCEEEE
T ss_conf 4899998899968868999999999980898699998999999999972-998998188743499999995099776999
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 024775229999999999846999889997338
Q gi|254780582|r 102 VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 102 ~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
.. .. ...+.++.+.|+++|++++++..
T Consensus 237 ~~-----~~-~~~~~~~~~~l~~gG~~v~vG~~ 263 (338)
T PRK09422 237 TA-----VA-KAAFNQAVDAVRAGGRVVAVGLP 263 (338)
T ss_pred EC-----CC-HHHHHHHHHHHHCCCEEEEECCC
T ss_conf 67-----87-89999999981169999998778
No 223
>pfam01795 Methyltransf_5 MraW methylase family. Members of this family are probably SAM dependent methyltransferases based on Escherichia coli mraW. This family appears to be related to pfam01596.
Probab=79.70 E-value=2 Score=22.52 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 999999999846999889997338
Q gi|254780582|r 111 PFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 111 p~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
...+|..+..+|+|||+++++.|+
T Consensus 220 L~~~L~~~~~~L~~gGrl~VISFH 243 (310)
T pfam01795 220 LKEALEQAPDLLAPGGRLSVISFH 243 (310)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 999999999836899689999854
No 224
>pfam01555 N6_N4_Mtase DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.
Probab=78.72 E-value=2.1 Score=22.34 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=23.2
Q ss_pred HHHCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 752299999999998469998899973387
Q gi|254780582|r 106 EFAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 106 E~~~dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
|+.+.-...++|+.|+|+|+|.+++.....
T Consensus 27 ~y~~~~~~~~~~~~rvLk~~G~~~~~~~~~ 56 (221)
T pfam01555 27 EYLEWLEEWLKEVRRVLKPGGSIFINIGDK 56 (221)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEECCCH
T ss_conf 999999999999999826886599976717
No 225
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=78.41 E-value=2.2 Score=22.23 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 999999999846999889997338
Q gi|254780582|r 111 PFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 111 p~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
...+|..+.++|+|||+|+|+.|+
T Consensus 223 L~~~L~~a~~~L~~~GRl~VIsFH 246 (314)
T COG0275 223 LEEALEAALDLLKPGGRLAVISFH 246 (314)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEC
T ss_conf 999999999961889679999953
No 226
>pfam07757 AdoMet_MTase Predicted AdoMet-dependent methyltransferase. Proteins in this family have been predicted to function as AdoMet-dependent methyltransferases.
Probab=78.00 E-value=2.2 Score=22.29 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=26.4
Q ss_pred HHHHHHHHCCCCCC----CEEEEECCCCCHHHHH-HHCCCCEEEEEE
Q ss_conf 99999975010489----7599965388111355-312387488730
Q gi|254780582|r 24 ISKVLSTTWDDVTG----CRLLGLGYAIPFFSCF-HGKVERTLAFMP 65 (242)
Q Consensus 24 ~~~~l~~~l~~~~g----~~vLdiGcg~g~~~~~-~~~~~~~~~~~~ 65 (242)
|...|-.+|.+..+ ..-+|+|||.|.+-.. ...+....++|.
T Consensus 42 IAayLi~LW~~~~~~~~~~~FvDlGCGNGlLV~IL~~EGy~G~GiD~ 88 (112)
T pfam07757 42 IAAYLIMLWRQTRSAESLQSFVDIGCGNGLLVYILASEGYRGYGIDL 88 (112)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999998614257885377147722899989867887733141
No 227
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=76.63 E-value=6.1 Score=19.73 Aligned_cols=113 Identities=14% Similarity=0.122 Sum_probs=61.9
Q ss_pred CCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHH----HCCCCCE---EEECHHHCCCCCC-CCCCHHHHHH
Q ss_conf 89759996538811135531238---7488730589998323----1168623---6533365677547-2020022024
Q gi|254780582|r 36 TGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWP----DQYFSST---ALVSEGNLPLADS-SVDCVLMVHY 104 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~---~~~d~~~LPf~~~-sfD~Vi~~h~ 104 (242)
.|.++.|+||..+|+..++...+ ..++.+........+. +...... -++|. ..+++.+ .+|+++....
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIAGM 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-LAVLELEDEIDVIVIAGM 94 (226)
T ss_pred CCCCEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCCCCCCCCCCEEEEECC
T ss_conf 5994553267625768999965983268983106678999999887458852077752687-312576677687999578
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 775229999999999846999889997338774034565327665655788899999996287621
Q gi|254780582|r 105 LEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLS 170 (242)
Q Consensus 105 LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~ 170 (242)
=- .--..+|+|-..-|+.- .=++.-||- ....|+.||...+|++.
T Consensus 95 GG--~lI~~ILee~~~~l~~~-~rlILQPn~------------------~~~~LR~~L~~~~~~I~ 139 (226)
T COG2384 95 GG--TLIREILEEGKEKLKGV-ERLILQPNI------------------HTYELREWLSANSYEIK 139 (226)
T ss_pred CH--HHHHHHHHHHHHHHCCC-CEEEECCCC------------------CHHHHHHHHHHCCCEEE
T ss_conf 67--89999999866550574-107878887------------------88999999996795144
No 228
>PRK00050 mraW S-adenosyl-methyltransferase MraW; Provisional
Probab=76.06 E-value=2.2 Score=22.22 Aligned_cols=41 Identities=7% Similarity=-0.130 Sum_probs=19.5
Q ss_pred CCCCCCCEEEEECCCCCHH-HHHHH---CCCCEEEEEECHHHHHH
Q ss_conf 0104897599965388111-35531---23874887305899983
Q gi|254780582|r 32 WDDVTGCRLLGLGYAIPFF-SCFHG---KVERTLAFMPAGQGATN 72 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~g~~-~~~~~---~~~~~~~~~~~~~~~~~ 72 (242)
+...+|...+|--.|.|.- ...+. .....+++|-++.....
T Consensus 19 L~~~~~g~yvD~T~G~GGHS~~iL~~l~~~~~li~iDrD~~ai~~ 63 (309)
T PRK00050 19 LAIKPDGIYVDGTFGRGGHSRAILSQLGPGGRLIAIDRDPQAIAA 63 (309)
T ss_pred CCCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 682899999993889839999999727999889999898899999
No 229
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=75.89 E-value=4.4 Score=20.56 Aligned_cols=44 Identities=11% Similarity=0.264 Sum_probs=28.7
Q ss_pred HHHCCH-HHHHHHHHHHHHHHHHCCCCCC---CEEEEECCCCCHHHHH
Q ss_conf 961288-9899999999999975010489---7599965388111355
Q gi|254780582|r 10 QFYSSF-LGKCTTDAISKVLSTTWDDVTG---CRLLGLGYAIPFFSCF 53 (242)
Q Consensus 10 ~wY~s~-~G~~~~~~~~~~l~~~l~~~~g---~~vLdiGcg~g~~~~~ 53 (242)
+|++.| +++.+-+.+...+.+.|..... ..++++|.|.|.+..-
T Consensus 47 DFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~D 94 (370)
T COG1565 47 DFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASD 94 (370)
T ss_pred CEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHH
T ss_conf 745244268899999999999999983689984489967996769999
No 230
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=75.15 E-value=6.7 Score=19.50 Aligned_cols=108 Identities=12% Similarity=-0.011 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHCCCCCC----CEEEEECCCCCHH-HHHHH---CC---CCEEEEEECHHHHHHHHHC-------CCCCE
Q ss_conf 999999999975010489----7599965388111-35531---23---8748873058999832311-------68623
Q gi|254780582|r 20 TTDAISKVLSTTWDDVTG----CRLLGLGYAIPFF-SCFHG---KV---ERTLAFMPAGQGATNWPDQ-------YFSST 81 (242)
Q Consensus 20 ~~~~~~~~l~~~l~~~~g----~~vLdiGcg~g~~-~~~~~---~~---~~~~~~~~~~~~~~~~~~~-------~~~~~ 81 (242)
..+++...|.+..+.... ..|+-+|+|-|-+ ...+. .. ...+++.-.+++....... .....
T Consensus 166 Ye~AI~~aL~D~~~~~~~~~~~~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~V~i 245 (447)
T pfam05185 166 YERAIRKALLDWVPEKKKTSGTLVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDKVTL 245 (447)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 99999999986330013677756999985896489999999999819966999995687799999998505431780699
Q ss_pred EEECHHHCCCCCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHCCCCCEE
Q ss_conf 65333656775472020022024775229--999999999846999889
Q gi|254780582|r 82 ALVSEGNLPLADSSVDCVLMVHYLEFAED--PFLMLHEIWRVLTSGGRM 128 (242)
Q Consensus 82 ~~~d~~~LPf~~~sfD~Vi~~h~LE~~~d--p~~~L~Ei~RvLkPgG~l 128 (242)
+.+|..++.- ++.+|++|+--.=-|=+| --++|.-+.|.|+|+|.-
T Consensus 246 i~~DMR~w~~-p~k~Di~VSELLGSFGDNELSPECLdg~q~~lk~~gIs 293 (447)
T pfam05185 246 ISSDMREWKG-PEKADILVSELLGSFGDNELSPECLDGAQRFLKPDGIS 293 (447)
T ss_pred EECCHHCCCC-CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 9080005799-87735897521166666557977877899746898468
No 231
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase; InterPro: IPR011023 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are primarily restricted to the euryarchaeota and proteobacteria respectively; where they are either described as either nucleolar protein or tRNA/rRNA cytosine-C5-methylase. They all have the S-adenosyl methionine (SAM) binding domain and are related to bacterial Fmu (16S rRNA m5C 967 methyltransferase) where the structure of the methyl transferase domain has been determined . In the eukaryota, the majority are annotated as being 'nucleolar protein'. None of the eukaryotic members in this family have a the SAM binding signature. Despite this, the yeast Nop2p is a probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis ; localised to the nucleolus and is essential for viability . Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing . There is substantial identity between Nop2p and human p120 (NOL1), which is also called the proliferation-associated nucleolar antigen , . .
Probab=74.41 E-value=7 Score=19.39 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHH-CCCC--CCCEEEEECCCCC----HHHHHHHCCCCEEEEEECHHHHHH---HHHCCC-CCE--E
Q ss_conf 9899999999999975-0104--8975999653881----113553123874887305899983---231168-623--6
Q gi|254780582|r 16 LGKCTTDAISKVLSTT-WDDV--TGCRLLGLGYAIP----FFSCFHGKVERTLAFMPAGQGATN---WPDQYF-SST--A 82 (242)
Q Consensus 16 ~G~~~~~~~~~~l~~~-l~~~--~g~~vLdiGcg~g----~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~--~ 82 (242)
.|.++.+.....|=.. +... .+++|||+-+..| +++..+.+.+.+++-+.+..-+.. .-.+.+ ..+ +
T Consensus 54 ~G~y~~q~aSSmiPp~aL~p~Gn~~~~vlD~AAaPGgKTT~is~~m~N~G~i~Ane~~ksR~k~L~~NI~R~G~~n~~v~ 133 (284)
T TIGR00446 54 LGYYYVQEASSMIPPLALEPEGNEKERVLDMAAAPGGKTTQISALMKNEGAIVANEVSKSRTKVLIANINRMGVLNVAVI 133 (284)
T ss_pred HHHHHHHHHHHCCCCEEECCCCCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHEEEEEE
T ss_conf 53789987873676030177876888799974088964899999865885189973763410667865556210033324
Q ss_pred EECHHHCCCCCCC----CCCHH----------------------HHHHHHHHCCHHHHHHHHHHHCCC----CCEEEEEE
Q ss_conf 5333656775472----02002----------------------202477522999999999984699----98899973
Q gi|254780582|r 83 LVSEGNLPLADSS----VDCVL----------------------MVHYLEFAEDPFLMLHEIWRVLTS----GGRMIVVV 132 (242)
Q Consensus 83 ~~d~~~LPf~~~s----fD~Vi----------------------~~h~LE~~~dp~~~L~Ei~RvLkP----gG~lii~~ 132 (242)
..|....|---.. ||.|+ .-...+-+.-..++|--+...||| ||.++=++
T Consensus 134 ~~DgR~f~~~~~~~eifFD~iLLDAPCSG~GvI~KD~~~~~~~~~eD~~~~s~lQkeL~~~A~d~lk~nskhGGv~VYST 213 (284)
T TIGR00446 134 NVDGRKFGAVVLKMEIFFDRILLDAPCSGEGVIRKDPSRKKNRSEEDILEISKLQKELILAAFDALKPNSKHGGVLVYST 213 (284)
T ss_pred ECCCCHHHHHHCCCEEEEEEEEECCCCCCCCEEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
T ss_conf 13763001231443034321452578798833765723311477245776467679999999875044566688889850
Q ss_pred C
Q ss_conf 3
Q gi|254780582|r 133 P 133 (242)
Q Consensus 133 ~ 133 (242)
=
T Consensus 214 C 214 (284)
T TIGR00446 214 C 214 (284)
T ss_pred C
T ss_conf 3
No 232
>TIGR00006 TIGR00006 S-adenosyl-methyltransferase MraW; InterPro: IPR002903 This is a family of methyltransferases. Methyltransferases are responsible for the transfer of methyl groups between two molecules.; GO: 0008168 methyltransferase activity.
Probab=74.05 E-value=3.1 Score=21.40 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.2
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 29999999999846999889997338
Q gi|254780582|r 109 EDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 109 ~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
+.-..+|..+-.+|+|||+|.|++|+
T Consensus 228 ~~Le~~L~~~~~~L~~~Grl~vIsFH 253 (323)
T TIGR00006 228 EELEEALQQAPNLLKPGGRLSVISFH 253 (323)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEHH
T ss_conf 99999999999841789718987400
No 233
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase B; InterPro: IPR004573 This family consists of bacterial sequences related to Escherichia coli rsmB, an rRNA SAM-dependent methyltransferase. All, are likely to be functionally equivalent and based on comparison of core motifs would appear to belong to a larger superfamily of S-adenosyl-methionine (AdoMet)-dependent RNA m5C methyltransferases . In E. coli, originally, the reading frame, encoding this protein, was interpreted as two reading frames, fmu and fmv. It has since been renamed, rsmB (Alternate Gene Symbols: rrmB, sun, fmu, fmv, yhdB). The recombinant protein, commonly referred to as Fmu, has been demonstrated to methylate only C967 of the 16S ribosomal RNA and to produce only m5C at that position. . The structure of the E. coli protein (Fmu) has been determined . Fmu contains three subdomains which share structural homology to DNA m5C methyltransferases and two RNA binding protein families. The N-terminal sequence of Fmu shares homology to another (noncatalytic) RNA binding protein, e.g. the ribosomal RNA antiterminator protein NusB (IPR011605 from INTERPRO). The catalytic lobe of Fmu, N1 domain, comprises the conserved core identified in all of the putative RNA m5C MTase sequences. Although the N1 domain is structurally homologous to known RNA binding proteins, there is no clear sequence motif that defines its role in RNA binding and recognition. At the functional centre of the catalytic lobe is the MTase domain of Fmu (residues 232-429), which adopts a fold typical of known AdoMet-dependent methyltransferases. In spite of the lack of a conserved RNA binding motif in the N1 domain, the close association of the N1 and MTase domains suggest that any RNA bound in the active site of the MTase domain is likely to interact with the N1 domain. ; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing.
Probab=70.07 E-value=8.9 Score=18.81 Aligned_cols=114 Identities=13% Similarity=0.047 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHCCCCCCCEEEEECCCCCH----HHHHHHCCCCEEEEEECHHHHHHHHHC---CCCCEEE-----ECHH
Q ss_conf 999999999975010489759996538811----135531238748873058999832311---6862365-----3336
Q gi|254780582|r 20 TTDAISKVLSTTWDDVTGCRLLGLGYAIPF----FSCFHGKVERTLAFMPAGQGATNWPDQ---YFSSTAL-----VSEG 87 (242)
Q Consensus 20 ~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~d~~ 87 (242)
+++.=.+....++....+++|||+=+..|. ..+.+.+.+.++++|....-+.+.... -+-..+. ++..
T Consensus 255 vQD~Saq~va~~L~P~~~E~iLD~CAAPGGKttHI~EL~~~~g~v~a~D~~~~rl~~~~~~~~RLGl~~i~~~~~~~~~~ 334 (487)
T TIGR00563 255 VQDASAQWVATLLDPKNEETILDACAAPGGKTTHIAELMPDQGQVVALDLHKHRLKRVKENLDRLGLTIIKVEEVDGDKA 334 (487)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHCCEEEEEEEECCCCC
T ss_conf 32168999999738898874773114845704767742479720898862125788999999861883788772025677
Q ss_pred HCCC---CCC----CCCCHHH------HHHH----------------HHHCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 5677---547----2020022------0247----------------7522999999999984699988999733
Q gi|254780582|r 88 NLPL---ADS----SVDCVLM------VHYL----------------EFAEDPFLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 88 ~LPf---~~~----sfD~Vi~------~h~L----------------E~~~dp~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
.-.+ |-+ .||.|++ ..|+ +-++=...+|++||-.+|+||.|+-++=
T Consensus 335 ~~~~W~~e~~ksaa~fDRiLlDaPCSg~GvirR~PD~kw~~~~~diA~L~~LQ~~iL~aiaP~vK~GGtLvYsTC 409 (487)
T TIGR00563 335 GPKEWLAEVEKSAAQFDRILLDAPCSGTGVIRRHPDIKWLRKPADIARLAELQKEILKAIAPLVKKGGTLVYSTC 409 (487)
T ss_pred CCCCCCCCCHHHHHHHCEEEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 665444520102333142156078774433001787555668565178999999999988565357975888614
No 234
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=67.14 E-value=10 Score=18.45 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=51.4
Q ss_pred CEEEEECCCC-C-HHHHHHHCCCCEEEEEECHHH-HHHHHHCCC-------CCEEEECHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 7599965388-1-113553123874887305899-983231168-------62365333656775472020022024775
Q gi|254780582|r 38 CRLLGLGYAI-P-FFSCFHGKVERTLAFMPAGQG-ATNWPDQYF-------SSTALVSEGNLPLADSSVDCVLMVHYLEF 107 (242)
Q Consensus 38 ~~vLdiGcg~-g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~ 107 (242)
.+|+-+|+|. | ++...+.+.++.+.+....+. ........- .........+-+-+...+|+|++.- -
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~ag~~V~li~r~~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~D~iiv~v---K 77 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQAGHDVTLVARGATLAEALNENGLRLLEGGEVFVVPVPAADDPAELGPQDLVILAV---K 77 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCEEEECCCCEEECCCCCCCCHHHCCCCCEEEEEC---C
T ss_conf 9899999149999999999848998899978888999999689399528976980550348866748988899980---6
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 229999999999846999889997338774
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRG 137 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s 137 (242)
..+..++++++...+.|+..+ ++.=|-.+
T Consensus 78 s~~~~~a~~~l~~~l~~~t~i-v~lqNG~g 106 (307)
T PRK06522 78 AYQLPAALPDLAPLLGPETVV-LFLQNGVG 106 (307)
T ss_pred CCCHHHHHHHHHHHCCCCCEE-EEEECCCC
T ss_conf 668999999998645999489-99616867
No 235
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=67.05 E-value=8.8 Score=18.82 Aligned_cols=71 Identities=10% Similarity=-0.044 Sum_probs=33.2
Q ss_pred CCCCCCEEEEECCC-CCH-HHHHHHCCC-CEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 10489759996538-811-135531238-748873058999832311686236533365677547202002202477
Q gi|254780582|r 33 DDVTGCRLLGLGYA-IPF-FSCFHGKVE-RTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLE 106 (242)
Q Consensus 33 ~~~~g~~vLdiGcg-~g~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE 106 (242)
|..+|++|+-+|.| +|. ...++.+.+ .+.+.|......... .......+......-.+ ..+|+||.+-..-
T Consensus 8 ~~~~Gk~V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~d~vV~SPGI~ 81 (487)
T PRK03369 8 PLTPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH-AERGVATVSSSDAVQQI--ADYALVVTSPGFP 81 (487)
T ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCHHHHHH-HHCCCCEECCCCCHHHH--CCCCEEEECCCCC
T ss_conf 65798989999156838999999997869799998982577999-86599486376226564--6778899899579
No 236
>pfam04989 CmcI Cephalosporin hydroxylase. Members of this family are about 220 amino acids long. The CmcI protein is presumed to represent the cephalosporin-7--hydroxylase. However this has not been experimentally verified.
Probab=66.69 E-value=10 Score=18.40 Aligned_cols=140 Identities=14% Similarity=0.062 Sum_probs=67.2
Q ss_pred HHHCCCCCCCEEEEECCCCCH----HHHHHH---CCCCEEEEEECHHHHHH-HHHCCCCCEEEECHHHCC-------CC-
Q ss_conf 975010489759996538811----135531---23874887305899983-231168623653336567-------75-
Q gi|254780582|r 29 STTWDDVTGCRLLGLGYAIPF----FSCFHG---KVERTLAFMPAGQGATN-WPDQYFSSTALVSEGNLP-------LA- 92 (242)
Q Consensus 29 ~~~l~~~~g~~vLdiGcg~g~----~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~LP-------f~- 92 (242)
++++-..+...+.|+|...|- ++..+. ..+.++++|..-....+ .........+.++..+.- +.
T Consensus 25 qeii~~~kPd~IIE~G~a~GGS~l~~A~~l~~~~~~~~VigiDi~i~~~~~~~i~~~~I~lieg~s~d~~~~~~v~~~~~ 104 (202)
T pfam04989 25 QELIWELKPDLIIETGIAHGGSALFFASMLELLGSDGKVLGIDIDIREHNRPAIEAPRITFIQGSSTDPEIIEQVRSLAE 104 (202)
T ss_pred HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHCCCCEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999859998999616766289999999997389987999957644335435316876999768567889988999853
Q ss_pred -CCCCCCHH-HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH-CCCCCCCCCCHHHHHHHHHHCC-CC
Q ss_conf -47202002-20247752299999999998469998899973387740345653-2766565578889999999628-76
Q gi|254780582|r 93 -DSSVDCVL-MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEH-TPFGSGQPYSWYQMISLLREAN-FT 168 (242)
Q Consensus 93 -~~sfD~Vi-~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~-~~~~~~r~~~~~~l~~~l~~~g-f~ 168 (242)
...+-++. +.|+-||+ -+-|+-....+++|.++++.--+-..+...... .+++.+ .-....++++|+... |+
T Consensus 105 ~~~~vlVilDs~Ht~~hV---l~eL~~y~~lv~~GsY~IVeDTii~~~p~~~~~~r~w~~g-nnP~~Av~eFL~~~~~F~ 180 (202)
T pfam04989 105 PPHPVLVILDSDHTHEHV---LAELRAYAPLVSEGSYLVVEDTIIEDLPESPFPDRPWGKG-NNPKTAVTEFLAEHPEFE 180 (202)
T ss_pred CCCCEEEEECCCCCHHHH---HHHHHHHHHHCCCCCEEEEECCCHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCCE
T ss_conf 798589996488656889---9999987521576889999576243175566788868789-897999999998789938
Q ss_pred CEEE
Q ss_conf 2125
Q gi|254780582|r 169 LSIT 172 (242)
Q Consensus 169 ~~~~ 172 (242)
++..
T Consensus 181 iD~~ 184 (202)
T pfam04989 181 IDTA 184 (202)
T ss_pred ECCC
T ss_conf 6532
No 237
>KOG1253 consensus
Probab=66.36 E-value=8.8 Score=18.83 Aligned_cols=103 Identities=14% Similarity=0.055 Sum_probs=63.4
Q ss_pred CCCEEEEECCCCCHH----HHHHHCCCCEEEEEECHHHHHHHHHCCCCC-------EEEECHH----HCCCCCCCCCCHH
Q ss_conf 897599965388111----355312387488730589998323116862-------3653336----5677547202002
Q gi|254780582|r 36 TGCRLLGLGYAIPFF----SCFHGKVERTLAFMPAGQGATNWPDQYFSS-------TALVSEG----NLPLADSSVDCVL 100 (242)
Q Consensus 36 ~g~~vLdiGcg~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~d~~----~LPf~~~sfD~Vi 100 (242)
.+-++||.=+++|.- ..++.....+++.|.+.+.+.....+-... ....|+. ..|-.+.+||+|=
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCCEEE
T ss_conf 75008987645517888998870424531036787778899986655067322112441027789875645212466672
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH
Q ss_conf 202477522999999999984699988999733877403456
Q gi|254780582|r 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM 142 (242)
Q Consensus 101 ~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~ 142 (242)
|+--..|..+|+.+.+.++.||.|.++--.-..+-|-.
T Consensus 189 ----LDPyGs~s~FLDsAvqav~~gGLL~vT~TD~aVL~gn~ 226 (525)
T KOG1253 189 ----LDPYGSPSPFLDSAVQAVRDGGLLCVTCTDMAVLAGNA 226 (525)
T ss_pred ----CCCCCCCCHHHHHHHHHHHCCCEEEEEECCHHHHCCCC
T ss_conf ----37889962779999998640877999823357661687
No 238
>KOG2651 consensus
Probab=65.90 E-value=10 Score=18.46 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=22.7
Q ss_pred CCCCEEEEECCCCCHHHHHHHC-CCCEEEEEECHHH
Q ss_conf 4897599965388111355312-3874887305899
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCFHGK-VERTLAFMPAGQG 69 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~~~~-~~~~~~~~~~~~~ 69 (242)
..-..++|+|.|.|+++.+++- .+..+...++++.
T Consensus 152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~ 187 (476)
T KOG2651 152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQR 187 (476)
T ss_pred CCCCHHHCCCCCCCHHHHHHHHCCCCEEEEECCCHH
T ss_conf 187114115777328999986426816999646368
No 239
>pfam09832 DUF2059 Uncharacterized protein conserved in bacteria (DUF2059). This domain, found in various prokaryotic proteins, has no known function.
Probab=61.76 E-value=11 Score=18.37 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=18.4
Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 78899996128898999999999999
Q gi|254780582|r 4 DIVELRQFYSSFLGKCTTDAISKVLS 29 (242)
Q Consensus 4 di~~l~~wY~s~~G~~~~~~~~~~l~ 29 (242)
++.++-+||.||.|+.+.+..-....
T Consensus 50 El~~~~~Fy~sp~G~k~~~~~p~~~~ 75 (92)
T pfam09832 50 ELKDIIAFYKSPAGQKLLAKMPALTQ 75 (92)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 99999999738798999998589999
No 240
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=60.91 E-value=14 Score=17.77 Aligned_cols=99 Identities=12% Similarity=0.050 Sum_probs=53.9
Q ss_pred CEEEEECCCC-C-HHHHHHHCCCCEEEEEECHHHHHHHHHCC-------CCCEEEECHHHCC-CCCCCCCCHHHHHHHHH
Q ss_conf 7599965388-1-11355312387488730589998323116-------8623653336567-75472020022024775
Q gi|254780582|r 38 CRLLGLGYAI-P-FFSCFHGKVERTLAFMPAGQGATNWPDQY-------FSSTALVSEGNLP-LADSSVDCVLMVHYLEF 107 (242)
Q Consensus 38 ~~vLdiGcg~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~d~~~LP-f~~~sfD~Vi~~h~LE~ 107 (242)
.+|+-+|+|. | ++...+.+.++.+.+.-....+....... ............+ -..+.||+|++.- -
T Consensus 1 MkI~I~GaGAiG~~~a~~L~~~g~~V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~D~viva~---K 77 (306)
T PRK12921 1 MKIAVVGAGAVGGTFGARLLEAGRDVTFLGRSARAEALREKGLVIRSDHGDVTVPGPVITDPEEITGPFDLVILAV---K 77 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEECCCEEEEECCCCCCCHHHCCCCCEEEEEE---C
T ss_conf 9899999249999999999836998899970009999997896999779769980610508056568976899970---4
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
Q ss_conf 229999999999846999889997338774034
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWA 140 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~ 140 (242)
..+...+++.+...+.|+..+ ++.=|-.+.+.
T Consensus 78 s~~~~~a~~~l~~~~~~~t~i-l~lQNG~g~~~ 109 (306)
T PRK12921 78 AYQLDAAIPDLKPLVGEDTVI-IPLQNGIGHLE 109 (306)
T ss_pred CCCHHHHHHHHHHHCCCCCEE-EEECCCCCHHH
T ss_conf 567799999998633999489-99348775388
No 241
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=60.20 E-value=14 Score=17.69 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=52.9
Q ss_pred CEEEEECCCC--CHHHHHHHCCCCEEEEEEC-HHHHHHHHHCCCCCEEE--------ECHHHCCCCCCCCCCHHHHHHHH
Q ss_conf 7599965388--1113553123874887305-89998323116862365--------33365677547202002202477
Q gi|254780582|r 38 CRLLGLGYAI--PFFSCFHGKVERTLAFMPA-GQGATNWPDQYFSSTAL--------VSEGNLPLADSSVDCVLMVHYLE 106 (242)
Q Consensus 38 ~~vLdiGcg~--g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--------~d~~~LPf~~~sfD~Vi~~h~LE 106 (242)
.+++-+|+|. +++...+...++.+.+... ........+.. ...+. -.....+-.++.+|.|++.-
T Consensus 3 MkI~IiGaGAiG~~~a~~L~~ag~dV~lv~r~~~~~~~~~~~g-~~~~~~~~~~~~~~v~~~~~~~~~~~D~vivav--- 78 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAG-GLTLVEQGQASLYAIPAETADAPEPIHRLLVAC--- 78 (305)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCC-CEEEEECCCEEEEECCCCCCCCCCCCCEEEEEE---
T ss_conf 8899988239999999999848997399994789999999789-989986895578740465766578877899980---
Q ss_pred HHCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 522999999999984699988999733877
Q gi|254780582|r 107 FAEDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 107 ~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
-..+..++++++...+.|++.+ ++.=|-.
T Consensus 79 K~~~~~~a~~~l~~~l~~~t~I-v~lQNGl 107 (305)
T PRK05708 79 KAYDAEPAVASLAHRLAPGAEL-LLLQNGL 107 (305)
T ss_pred CCCCHHHHHHHHHHHCCCCCEE-EEECCCC
T ss_conf 4256899999988644999589-9943776
No 242
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=59.78 E-value=14 Score=17.65 Aligned_cols=84 Identities=14% Similarity=0.194 Sum_probs=49.7
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHH-HHHCCCCCEEEEEEEEECCCCC
Q ss_conf 775229999999999846999889997338774034565327665655788899999-9962876212578983086552
Q gi|254780582|r 105 LEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISL-LREANFTLSITSRSLFFPPTHK 183 (242)
Q Consensus 105 LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~-l~~~gf~~~~~~~~~~~pp~~~ 183 (242)
.||-.--.+++++++.+|+++|.++....+.... +.-.+.+. ++.+||.+.. .+|+.+
T Consensus 561 ~~fe~l~~~a~~~~rEll~ddg~lv~y~ahk~~e---------------aW~tlveA~~Rragl~iTr------~~p~~T 619 (875)
T COG1743 561 EEFENLFREAFQAVRELLKDDGRLVTYYAHKAPE---------------AWITLVEAGWRRAGLQITR------AWPVRT 619 (875)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCC---------------CHHHHHHHHHHHCCCEEEC------CCCCCC
T ss_conf 9999999999999998638886179998626875---------------3176888887525640330------355312
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEE
Q ss_conf 467631589999997611321438999999751
Q gi|254780582|r 184 KCILKLWSVFEKIGNIFGPGFAGIYVIEARKIL 216 (242)
Q Consensus 184 ~~~~~~~~~~e~~~~~~~p~~g~~~~i~a~K~~ 216 (242)
....+... ++-..++...+++++||-
T Consensus 620 Es~~~v~~-------rgk~aL~tsiV~v~RpR~ 645 (875)
T COG1743 620 ESLASVRA-------RGKAALETSIVVVWRPRK 645 (875)
T ss_pred CCHHHHHH-------HHHHHHHCEEEEEECCCC
T ss_conf 21677998-------766432101589974677
No 243
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=58.63 E-value=15 Score=17.54 Aligned_cols=92 Identities=10% Similarity=0.107 Sum_probs=46.2
Q ss_pred EEECCCC--CHHHHHHHCCCCEEEEEECHHHHHHHHHCCCC------CEEEEC--HHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 9965388--11135531238748873058999832311686------236533--3656775472020022024775229
Q gi|254780582|r 41 LGLGYAI--PFFSCFHGKVERTLAFMPAGQGATNWPDQYFS------STALVS--EGNLPLADSSVDCVLMVHYLEFAED 110 (242)
Q Consensus 41 LdiGcg~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~d--~~~LPf~~~sfD~Vi~~h~LE~~~d 110 (242)
+-+|+|. +++...+.+.++.+.+...........+.... ...... ..+.+.+.+.+|+|++.- -..+
T Consensus 2 ~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~~~~~i~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v---Ka~~ 78 (150)
T pfam02558 2 AILGAGAVGSLYGARLARAGHDVTLIARGRHLEAIRENGLRITSPGGERTVPPPVATSASEELGPADLVIVAV---KAYQ 78 (150)
T ss_pred EEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCEEEEECCCCEEEECCEECCCHHHCCCCCEEEEEE---CCCC
T ss_conf 9996689999999999977992899975636788774976999479838980741038657658867999972---2458
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 99999999984699988999733877
Q gi|254780582|r 111 PFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 111 p~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
...+++.+...+.|+..+ ++.=|-.
T Consensus 79 ~~~al~~l~~~l~~~t~i-v~lqNG~ 103 (150)
T pfam02558 79 TAEALEDLAPLLGPNTVV-LLLQNGL 103 (150)
T ss_pred HHHHHHHHHHHCCCCCEE-EEEECCC
T ss_conf 899999988652888389-9942587
No 244
>PRK10201 G/U mismatch-specific DNA glycosylase; Provisional
Probab=55.92 E-value=16 Score=17.33 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=17.2
Q ss_pred HHCCCCCEEEEEECCCCCCHHHHHHCCC
Q ss_conf 8469998899973387740345653276
Q gi|254780582|r 120 RVLTSGGRMIVVVPNKRGMWARMEHTPF 147 (242)
Q Consensus 120 RvLkPgG~lii~~~n~~s~w~~~~~~~~ 147 (242)
.+|+||=.+++++.|| |+|+-.....|
T Consensus 4 D~l~p~L~vlF~GiNP-gl~Sa~~g~~f 30 (168)
T PRK10201 4 DILAPGLRVVFCGINP-GLSSAGTGFPF 30 (168)
T ss_pred CCCCCCCEEEEEEECC-CHHHHHCCCCC
T ss_conf 5458998489997497-88888539877
No 245
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=53.85 E-value=18 Score=17.07 Aligned_cols=117 Identities=15% Similarity=0.025 Sum_probs=60.9
Q ss_pred CCCC-EEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHH------HCC-----CCC--EEEECHHHC-CCCCCCC
Q ss_conf 4897-59996538811135531238---7488730589998323------116-----862--365333656-7754720
Q gi|254780582|r 35 VTGC-RLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWP------DQY-----FSS--TALVSEGNL-PLADSSV 96 (242)
Q Consensus 35 ~~g~-~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~------~~~-----~~~--~~~~d~~~L-Pf~~~sf 96 (242)
.+|. ++|-+|-|.|.-.+++-+.- +..-.+.++.+..-.. +.+ +.+ .+..|+.++ --..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHCCCC
T ss_conf 66642699972875187999971888552789743889998730026766603677668756999654788997413455
Q ss_pred CCHHHHHHHHHHCCH----------HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCC
Q ss_conf 200220247752299----------9999999984699988999733877403456532766565578889999999628
Q gi|254780582|r 97 DCVLMVHYLEFAEDP----------FLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREAN 166 (242)
Q Consensus 97 D~Vi~~h~LE~~~dp----------~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~g 166 (242)
|.||.-- +|| ..+-+-+.|-|+++|.+++---.+++-- . .-.++..-++++|
T Consensus 367 D~vIVDl-----~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp-----~--------vfw~i~aTik~AG 428 (508)
T COG4262 367 DVVIVDL-----PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTP-----R--------VFWRIDATIKSAG 428 (508)
T ss_pred CEEEEEC-----CCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCC-----C--------EEEEEHHHHHHCC
T ss_conf 5799968-----99899513432108999999973375754999548876577-----3--------0112054787376
Q ss_pred CCC
Q ss_conf 762
Q gi|254780582|r 167 FTL 169 (242)
Q Consensus 167 f~~ 169 (242)
|.+
T Consensus 429 ~~~ 431 (508)
T COG4262 429 YRV 431 (508)
T ss_pred CEE
T ss_conf 255
No 246
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=53.24 E-value=18 Score=17.02 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHCC--HHHHHHHHHHHCCCCCEEEE
Q ss_conf 472020022024775229--99999999984699988999
Q gi|254780582|r 93 DSSVDCVLMVHYLEFAED--PFLMLHEIWRVLTSGGRMIV 130 (242)
Q Consensus 93 ~~sfD~Vi~~h~LE~~~d--p~~~L~Ei~RvLkPgG~lii 130 (242)
.+++|.+++..+=+++.| ...++.||.|-+.||.++|+
T Consensus 325 ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vif 364 (414)
T COG5379 325 AGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVIF 364 (414)
T ss_pred CCCCCEEEEECCHHHCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 7874448982443204431399999998621577857998
No 247
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=53.24 E-value=18 Score=17.02 Aligned_cols=107 Identities=17% Similarity=0.214 Sum_probs=52.8
Q ss_pred HHHHHCCCCCCCEEEEECCC-CCH-HHHHHHCCCCEE-EEEECHHH----HHHHHHCCCCCEEEEC-HHHCCCCCCCCCC
Q ss_conf 99975010489759996538-811-135531238748-87305899----9832311686236533-3656775472020
Q gi|254780582|r 27 VLSTTWDDVTGCRLLGLGYA-IPF-FSCFHGKVERTL-AFMPAGQG----ATNWPDQYFSSTALVS-EGNLPLADSSVDC 98 (242)
Q Consensus 27 ~l~~~l~~~~g~~vLdiGcg-~g~-~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~d-~~~LPf~~~sfD~ 98 (242)
.+..+.++..|++|+-+|.| +|. ...++...+..+ ..|..... ....-+........+. .++++ +.+|+
T Consensus 4 ~~~~~~~~~~gk~v~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~---~~~d~ 80 (481)
T PRK01438 4 SLHSWHDDWSGLRVVVAGLGVSGFPAADALHELGASVTVVADGDDDRSRERAALLEVLGATVRLGDGETTLP---EGTEL 80 (481)
T ss_pred CCCCHHHHCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHH---CCCCE
T ss_conf 203376771899899995758899999999967998999979987448689998885498899688756662---48999
Q ss_pred HHHHHHHHHHCCHH--HH-------HHH---HHHHCCCCC----EEEEEECCCCC
Q ss_conf 02202477522999--99-------999---998469998----89997338774
Q gi|254780582|r 99 VLMVHYLEFAEDPF--LM-------LHE---IWRVLTSGG----RMIVVVPNKRG 137 (242)
Q Consensus 99 Vi~~h~LE~~~dp~--~~-------L~E---i~RvLkPgG----~lii~~~n~~s 137 (242)
||.+=.+-. .+|. .+ +.| ++|.+...+ .+.|++-|--+
T Consensus 81 vV~SPGI~~-~~p~~~~a~~~gi~i~~eiel~~~~~~~~~~~~~~IaVTGTnGKT 134 (481)
T PRK01438 81 VVTSPGWRP-THPLLAAAAEAGIPVWGDVELAWRLRDPDGTPAPWLAVTGTNGKT 134 (481)
T ss_pred EEECCCCCC-CCHHHHHHHHCCCCEECHHHHHHHHHHCCCCCCCEEEEECCCCCH
T ss_conf 998997899-899999999869938618999998752136888789993899746
No 248
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=53.03 E-value=18 Score=17.00 Aligned_cols=101 Identities=15% Similarity=0.102 Sum_probs=52.2
Q ss_pred HHHHHCCCCCCCEEEEECCC--CCHHHHHHHCC--CCEEEEEECHHHHHHHHHCCCCCEEEECHHHC-----CCC-CCCC
Q ss_conf 99975010489759996538--81113553123--87488730589998323116862365333656-----775-4720
Q gi|254780582|r 27 VLSTTWDDVTGCRLLGLGYA--IPFFSCFHGKV--ERTLAFMPAGQGATNWPDQYFSSTALVSEGNL-----PLA-DSSV 96 (242)
Q Consensus 27 ~l~~~l~~~~g~~vLdiGcg--~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L-----Pf~-~~sf 96 (242)
.+.+......|+++|-.|.+ .|.....+.+. .++++.+.+........+......+....+++ .+. ...+
T Consensus 131 ~l~~~~~~~~g~~vLi~gaaGgVG~~avQlAk~~Ga~Vi~t~~s~~k~e~~~~lGA~~vi~~~~~~~~~~i~~~t~g~gv 210 (327)
T PRK10754 131 LLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRALKAGAWQVINYREENIVERVKEITGGKKV 210 (327)
T ss_pred HHHHCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCC
T ss_conf 76531378999999998177611268999999869999999898999999996699999989999999999998689983
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 20022024775229999999999846999889997338
Q gi|254780582|r 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 97 D~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
|+|+ |.+. ...+....++|+|+|+++..+..
T Consensus 211 dvv~-----D~vG--~~~~~~~~~~l~~~G~iv~~G~~ 241 (327)
T PRK10754 211 RVVY-----DSVG--KDTWEASLDCLQRRGLMVSFGNA 241 (327)
T ss_pred EEEE-----ECCC--HHHHHHHHHHHHCCCEEEEEECC
T ss_conf 6999-----8988--89999999986349899998068
No 249
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=50.82 E-value=8 Score=19.07 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=12.7
Q ss_pred CCCCEEEEECCCCCHHHHH
Q ss_conf 4897599965388111355
Q gi|254780582|r 35 VTGCRLLGLGYAIPFFSCF 53 (242)
Q Consensus 35 ~~g~~vLdiGcg~g~~~~~ 53 (242)
..|++||||||-.=.-+-|
T Consensus 26 ~~GkkVlQIGCDPKhDSTF 44 (275)
T TIGR01281 26 KKGKKVLQIGCDPKHDSTF 44 (275)
T ss_pred HCCCEEEEECCCCCCCCCC
T ss_conf 4699189852578888774
No 250
>PRK11727 putative SAM-dependent methyltransferase; Provisional
Probab=48.93 E-value=16 Score=17.40 Aligned_cols=87 Identities=9% Similarity=-0.063 Sum_probs=39.9
Q ss_pred CCCCCCEEEEECCCCCHHHHHHH--CCCC-EEEEEECHHHHHHHHHC---CCC--CEE----EECHHHC----CCCCCCC
Q ss_conf 10489759996538811135531--2387-48873058999832311---686--236----5333656----7754720
Q gi|254780582|r 33 DDVTGCRLLGLGYAIPFFSCFHG--KVER-TLAFMPAGQGATNWPDQ---YFS--STA----LVSEGNL----PLADSSV 96 (242)
Q Consensus 33 ~~~~g~~vLdiGcg~g~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~---~~~--~~~----~~d~~~L----Pf~~~sf 96 (242)
+....-+.||||+|.--.-..+. ..+. -++.|.+...+..+... +.. ..+ +.+.+.+ =-+++.|
T Consensus 114 p~g~~v~gLDIGtGAncIYPLLG~~~ygW~fvgtDId~~sl~~A~~~v~~N~~L~~~I~lr~q~~~~~If~gii~~~e~f 193 (326)
T PRK11727 114 PKGANVRVLDIGVGANCIYPIIGVQEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERF 193 (326)
T ss_pred CCCCCCEEEECCCCCCEEEEECCCEECCCEEEEECCCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHCCCCCCCCEE
T ss_conf 88887236750567431121014300176379961798999999999984820105279996278676532458876657
Q ss_pred CCHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 2002202477522999999999984
Q gi|254780582|r 97 DCVLMVHYLEFAEDPFLMLHEIWRV 121 (242)
Q Consensus 97 D~Vi~~h~LE~~~dp~~~L~Ei~Rv 121 (242)
|..+|.=-.. +...++...-.|-
T Consensus 194 dftmCNPPF~--~S~eea~~gt~Rk 216 (326)
T PRK11727 194 DLTLCNPPFH--ASAAEARAGSERK 216 (326)
T ss_pred EEEECCCCCC--CCHHHHHHHHHHH
T ss_conf 7785189876--7899997420454
No 251
>TIGR00478 tly hemolysin A; InterPro: IPR004538 Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture. The mechanism of action is not well defined. Hemolysin A is induced by sodium ribonucleate, and is produced by pathogenic bacterial strains. Hemolysin A from Treponema hyodysenteriae causes swine dysentry.; GO: 0003723 RNA binding, 0019836 hemolysis by symbiont of host red blood cells.
Probab=47.45 E-value=23 Score=16.48 Aligned_cols=145 Identities=14% Similarity=0.093 Sum_probs=77.1
Q ss_pred HHHHHCCCCCCCEEEEECCCCCHHHHH-HHC-CCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCC-CCCCCCCCHH---
Q ss_conf 999750104897599965388111355-312-3874887305899983231168623653336567-7547202002---
Q gi|254780582|r 27 VLSTTWDDVTGCRLLGLGYAIPFFSCF-HGK-VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP-LADSSVDCVL--- 100 (242)
Q Consensus 27 ~l~~~l~~~~g~~vLdiGcg~g~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LP-f~~~sfD~Vi--- 100 (242)
.+..+-=...|.-+||+|..+|-|... +.+ +..+.++|.+...+. +.-....+..+.+-.+.- |.. ..|..-
T Consensus 68 ~L~~F~~~vk~ki~lD~GsS~GGFtd~aL~~GAk~VY~vDVG~~ql~-~kLR~D~Rv~~~eR~N~rGy~T-~~d~~~~qP 145 (240)
T TIGR00478 68 ALEEFEVDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLA-EKLRQDERVKVLERTNIRGYVT-PADIVKDQP 145 (240)
T ss_pred HCCCCCEEECCEEEEEECCCCCHHHHHHHHCCCCEEEEEEECCHHHH-HHCCCCCEEEEEECCCCCCCCC-HHHHHCCCC
T ss_conf 53543313378689970567304899998705846777860321334-3236366268964578744466-565407888
Q ss_pred H--HHHHHHH-CCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH--HHCCC-C--C---CCCCCHHHHHHHHHHCCCCC
Q ss_conf 2--0247752-2999999999984699988999733877403456--53276-6--5---65578889999999628762
Q gi|254780582|r 101 M--VHYLEFA-EDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM--EHTPF-G--S---GQPYSWYQMISLLREANFTL 169 (242)
Q Consensus 101 ~--~h~LE~~-~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~--~~~~~-~--~---~r~~~~~~l~~~l~~~gf~~ 169 (242)
+ .-+++-+ -....++.+++..|.|+-.+++.+ -|..-.++. +...+ + . +..---.++.+.....+|.+
T Consensus 146 ~P~lA~~DvSFiSl~~il~~L~~lL~P~~~~~~L~-kPqFe~~R~nl~~~~kkGvV~d~~~~~~~l~~~~~~~~~~~~~~ 224 (240)
T TIGR00478 146 MPDLAVVDVSFISLISILPELLLLLNPDNDLLLLV-KPQFEVGRLNLEKKNKKGVVRDKEAIAEALEKVIEKGESKDFQV 224 (240)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCEEEECCEEEECCCCCEECHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 97314444578879999998887508896078850-77523330223111577701155899999999987321578412
Q ss_pred EEEEE
Q ss_conf 12578
Q gi|254780582|r 170 SITSR 174 (242)
Q Consensus 170 ~~~~~ 174 (242)
..+..
T Consensus 225 ~~~~~ 229 (240)
T TIGR00478 225 KKILF 229 (240)
T ss_pred EEEEE
T ss_conf 10220
No 252
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=47.38 E-value=23 Score=16.47 Aligned_cols=131 Identities=12% Similarity=0.059 Sum_probs=69.0
Q ss_pred CEEEEECCCC-C-HHHHHHHCCCCEEEEEECHHHHHHHHHCCC------CCEEEEC-----HHHCCCCCCCCCCHHHHHH
Q ss_conf 7599965388-1-113553123874887305899983231168------6236533-----3656775472020022024
Q gi|254780582|r 38 CRLLGLGYAI-P-FFSCFHGKVERTLAFMPAGQGATNWPDQYF------SSTALVS-----EGNLPLADSSVDCVLMVHY 104 (242)
Q Consensus 38 ~~vLdiGcg~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~d-----~~~LPf~~~sfD~Vi~~h~ 104 (242)
.+|+=+|+|. | ++...+...++.+.+..-++.+........ ....... ....|-+...+|+|++.-
T Consensus 3 mkI~IiGaGAvG~~~a~~L~~aG~~V~lv~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~v- 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDEIRAHGLRLTDYRGRDVRVPPDAIAFSTDPAALATADLVLVTV- 81 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHCCCEEECCCCCEEEECCCEEEECCCHHHCCCCCEEEEEE-
T ss_conf 7799989679999999999858998799956789999996790996389976896366156148865658999899970-
Q ss_pred HHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHH-H-----------------HCCCCC------CC-----CCCH
Q ss_conf 77522999999999984699988999733877403456-5-----------------327665------65-----5788
Q gi|254780582|r 105 LEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM-E-----------------HTPFGS------GQ-----PYSW 155 (242)
Q Consensus 105 LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~-~-----------------~~~~~~------~r-----~~~~ 155 (242)
-..+..++++.+.-.+.|++. +++.=|-.+--... . ...+++ ++ .-..
T Consensus 82 --Ka~~~~~a~~~l~~~l~~~t~-il~lQNGlg~~e~l~~~~~~~~v~~g~~~~~~~~~gpg~~~~~~~g~~~~~~~~~~ 158 (341)
T PRK08229 82 --KSAATADAAAALAGHARPGAV-VVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGHFHQGTSGALAIEASPAL 158 (341)
T ss_pred --CCCCHHHHHHHHHHHCCCCCE-EEEEECCCCCHHHHHHHCCCCCEEEEEEEECEEEECCCEEEECCCCCCCCCCCHHH
T ss_conf --757889999999864389968-99950477719999986899829999978550996694799637886067888789
Q ss_pred HHHHHHHHHCCCCCEEE
Q ss_conf 89999999628762125
Q gi|254780582|r 156 YQMISLLREANFTLSIT 172 (242)
Q Consensus 156 ~~l~~~l~~~gf~~~~~ 172 (242)
.++.+.|...|+..+..
T Consensus 159 ~~l~~~l~~agi~~~~~ 175 (341)
T PRK08229 159 RPFAAAFERAGLPLVTH 175 (341)
T ss_pred HHHHHHHHHCCCCCEEC
T ss_conf 99999998479997767
No 253
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase; InterPro: IPR005758 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) , MurD (6.3.2.9 from EC) , MurE (6.3.2.13 from EC) and MurF (6.3.2.10 from EC) . These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales . This entry represents UDP-N-acetylmuramate-alanine ligase (MurC). MurC is an essential, cytoplasmic peptidoglycan biosynthetic enzyme, catalyzes the ATP-dependent ligation of L-alanine (Ala) and UDP-N-acetylmuramic acid (UNAM) to form UDP-N-acetylmuramyl-L-alanine (UNAM-Ala). The enzyme is a nonribosomal peptide ligase which utilises ATP to form an amide bond between L-alanine and UNAM.1 Mechanistic studies on the Escherichia coli MurC enzyme using oxygen isotope analyses demonstrated that the enzyme-catalyzed reaction proceeds through an acyl phosphate UNAM intermediate prior to L-alanine addition.; GO: 0005524 ATP binding, 0008763 UDP-N-acetylmuramate-L-alanine ligase activity, 0008360 regulation of cell shape, 0009252 peptidoglycan biosynthetic process, 0009273 peptidoglycan-based cell wall biogenesis, 0051301 cell division, 0005737 cytoplasm.
Probab=46.81 E-value=23 Score=16.42 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=4.9
Q ss_pred HHHHHHCCCCCEEEE
Q ss_conf 999984699988999
Q gi|254780582|r 116 HEIWRVLTSGGRMIV 130 (242)
Q Consensus 116 ~Ei~RvLkPgG~lii 130 (242)
++.-.=|..+|.+++
T Consensus 208 ~~F~~~l~~~G~~v~ 222 (491)
T TIGR01082 208 EKFIHNLPFYGLAVI 222 (491)
T ss_pred HHHHHHCCCCCEEEE
T ss_conf 999982788879999
No 254
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=45.40 E-value=24 Score=16.29 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=46.9
Q ss_pred HHHHCCCCCCCEEEEEC-CC-CCHHHHHHHC--CCCEEEEEECHHHHHHHHHCCCCCEEEECH--HH----C-C-CCCCC
Q ss_conf 99750104897599965-38-8111355312--387488730589998323116862365333--65----6-7-75472
Q gi|254780582|r 28 LSTTWDDVTGCRLLGLG-YA-IPFFSCFHGK--VERTLAFMPAGQGATNWPDQYFSSTALVSE--GN----L-P-LADSS 95 (242)
Q Consensus 28 l~~~l~~~~g~~vLdiG-cg-~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~----L-P-f~~~s 95 (242)
+.+...-.+|++||-.| +| .|.....+.+ ...+++...+..................+. ++ + . ....-
T Consensus 96 l~~~~~i~~g~~VlI~gg~G~vG~~aiqlak~~Ga~Vi~t~~s~~k~~~~~~lG~~~~~v~~~~~~~~~~~v~~~t~g~g 175 (288)
T smart00829 96 LVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRATGGRG 175 (288)
T ss_pred HHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHCCCC
T ss_conf 99750889999999978986777999999997398300340888999999976999607621799509999998708988
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 0200220247752299999999998469998899973
Q gi|254780582|r 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132 (242)
Q Consensus 96 fD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~ 132 (242)
+|+|+- .+. ...+.+..+.|+|+|+++.++
T Consensus 176 vDvv~d-----~vg--g~~~~~~~~~l~~~G~~v~ig 205 (288)
T smart00829 176 VDVVLN-----SLA--GEFLDASLRCLAPGGRFVEIG 205 (288)
T ss_pred CEEEEE-----CCC--HHHHHHHHHHHCCCCEEEEEC
T ss_conf 279998-----986--899999999753698899975
No 255
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=42.86 E-value=25 Score=16.24 Aligned_cols=136 Identities=20% Similarity=0.145 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC-CCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCC
Q ss_conf 288989999999999997501048975999653881113553123-8748873058999832311686236533365677
Q gi|254780582|r 13 SSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV-ERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPL 91 (242)
Q Consensus 13 ~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf 91 (242)
..|-|....+-+.-.+ +......|..+||+=||.|.|+..++.. .++.+-..|...+..+. .=+
T Consensus 181 tQPNa~vn~kMLeWA~-~~~~~~~g~DLLELYCGNGNFsLaLA~~f~rVLATEiaK~SV~aAq--------------~Ni 245 (361)
T TIGR02143 181 TQPNAAVNQKMLEWAL-EVTQNSKGMDLLELYCGNGNFSLALAQNFERVLATEIAKPSVNAAQ--------------YNI 245 (361)
T ss_pred CCCCHHHHHHHHHHHH-HHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH--------------HHH
T ss_conf 4751899999999999-9835888872010002675310445653334554302402479999--------------998
Q ss_pred CCCCCCCHHHH-H-HHHHHCCHHHHHHHHHHHCCCCCE--------EEEEECCCCCCHHHHHHCCCCCCCC----CCHHH
Q ss_conf 54720200220-2-477522999999999984699988--------9997338774034565327665655----78889
Q gi|254780582|r 92 ADSSVDCVLMV-H-YLEFAEDPFLMLHEIWRVLTSGGR--------MIVVVPNKRGMWARMEHTPFGSGQP----YSWYQ 157 (242)
Q Consensus 92 ~~~sfD~Vi~~-h-~LE~~~dp~~~L~Ei~RvLkPgG~--------lii~~~n~~s~w~~~~~~~~~~~r~----~~~~~ 157 (242)
+.+.+|-|-.. . +=|++ +--.--||..| |+.+|. =|++=|-+.|+-.---+..-.+.|- -.|.-
T Consensus 246 ~~N~idNv~i~RlSAEEft-~A~~~~R~F~R-L~d~gIdL~~Y~f~tiFVDPPRaGlD~~t~~Lv~~y~rIlYISCNP~T 323 (361)
T TIGR02143 246 AANKIDNVQIIRLSAEEFT-EAMNGVREFRR-LKDGGIDLKSYNFNTIFVDPPRAGLDPDTVKLVQKYERILYISCNPET 323 (361)
T ss_pred HCCCCCCEEHHHHHHHHHH-HHHCCCCCCCC-CCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHCCCEEEEECCHHH
T ss_conf 7179883101023279999-98603776546-566886334202560267798888898999999625987998469689
Q ss_pred HHHHHHHC
Q ss_conf 99999962
Q gi|254780582|r 158 MISLLREA 165 (242)
Q Consensus 158 l~~~l~~~ 165 (242)
|.+-|..+
T Consensus 324 L~~NL~~L 331 (361)
T TIGR02143 324 LKENLEQL 331 (361)
T ss_pred HHHHHHHH
T ss_conf 99999988
No 256
>pfam07090 DUF1355 Protein of unknown function (DUF1355). This family consists of several hypothetical bacterial proteins of around 250 residues in length. The function of this family is unknown.
Probab=42.72 E-value=20 Score=16.77 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=38.2
Q ss_pred ECCCCCHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHH----H-------HHHCCH
Q ss_conf 65388111355312387488730589998323116862365333656775472020022024----7-------752299
Q gi|254780582|r 43 LGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHY----L-------EFAEDP 111 (242)
Q Consensus 43 iGcg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~----L-------E~~~dp 111 (242)
...|..++...+.+.+..+..+|+.+....++.. .++| +.+|+||++.+ | ......
T Consensus 27 ~~~ga~~~~~al~~~~~~v~~mp~h~a~~~FP~t---------~eeL----~~YD~VILSDiGantllL~p~t~~~g~~~ 93 (183)
T pfam07090 27 YDEGADLLLFAILRSPYDVDYMPAHDAQIAFPVT---------LEEL----SAYDAVILSDIGSNTLLLQPDTWYRSKRP 93 (183)
T ss_pred HHCCHHHHHHHHHHCCCEEEEECCCCCHHHCCCC---------HHHH----HCCCEEEEEECCCCEEECCCHHHHCCCCC
T ss_conf 0048799999998679518974231046457738---------8888----40888999505766053183366526508
Q ss_pred HHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 9999999984699988999733
Q gi|254780582|r 112 FLMLHEIWRVLTSGGRMIVVVP 133 (242)
Q Consensus 112 ~~~L~Ei~RvLkPgG~lii~~~ 133 (242)
..-|+.+.+-.+-||-|++++-
T Consensus 94 pnrl~li~~yV~~GG~l~MiGG 115 (183)
T pfam07090 94 PNRLDLIADYVANGGALLMVGG 115 (183)
T ss_pred CCHHHHHHHHHHHCCCEEEECC
T ss_conf 3099999999980896799643
No 257
>TIGR01177 TIGR01177 conserved hypothetical protein TIGR01177; InterPro: IPR005885 This family of largely hypothetical proteins is found exclusively in the Archaea and contain a putative RNA methylase domain..
Probab=42.58 E-value=27 Score=16.04 Aligned_cols=121 Identities=21% Similarity=0.090 Sum_probs=75.8
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCCHHHHHHH-CCCCEEEE-EECHHHHHHHH------HCCC--CCEEEECHHHCCCC-
Q ss_conf 99999975010489759996538811135531-23874887-30589998323------1168--62365333656775-
Q gi|254780582|r 24 ISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHG-KVERTLAF-MPAGQGATNWP------DQYF--SSTALVSEGNLPLA- 92 (242)
Q Consensus 24 ~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~-~~~~~~~~~~~------~~~~--~~~~~~d~~~LPf~- 92 (242)
+.+.+........|..++|--||+|.+..... .....++. +.....+.-.. .... ......|...+|..
T Consensus 191 ~~~~~~~~~~~~~g~~~~dp~~g~gg~~~~~gl~g~~~~g~gd~~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 270 (358)
T TIGR01177 191 LARALVNLAGVKEGDRLLDPFCGTGGFLIEAGLLGAKPIGCGDLDWKLVEGARLNLEHYGIEDKVFSVKRGDAKDLPLRL 270 (358)
T ss_pred HHHHHHHHHHCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCCHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCHHCCCCC
T ss_conf 77777654202467510042226660332333321100024403567642521113330554315676403300111003
Q ss_pred -C--CCCCCHHHHH--------HHH-HHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHH
Q ss_conf -4--7202002202--------477-52299999999998469998899973387740345653
Q gi|254780582|r 93 -D--SSVDCVLMVH--------YLE-FAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEH 144 (242)
Q Consensus 93 -~--~sfD~Vi~~h--------~LE-~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~ 144 (242)
+ +++|.+..-. .-+ ...--...++++.++++++|...+..+....+-.....
T Consensus 271 ~~~~~~~~~~~~d~p~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 334 (358)
T TIGR01177 271 PGLDESVDAIATDPPYGRSTTAAGDGLEELYEKSLEELHEVLKGGGWLAVAVPTDLDLESLAEG 334 (358)
T ss_pred CCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
T ss_conf 5310112222125654531112210368888888888888642687179974033464665411
No 258
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=42.10 E-value=24 Score=16.36 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=19.7
Q ss_pred HCCCCCCCEEEEECCC-CCH-HHHHHHCCCCEEEEEE
Q ss_conf 5010489759996538-811-1355312387488730
Q gi|254780582|r 31 TWDDVTGCRLLGLGYA-IPF-FSCFHGKVERTLAFMP 65 (242)
Q Consensus 31 ~l~~~~g~~vLdiGcg-~g~-~~~~~~~~~~~~~~~~ 65 (242)
.+....|++|+-+|.| +|. ...++...+..+.+.+
T Consensus 3 ~~~~~~~k~i~viGlG~sG~s~a~~L~~~G~~V~~~D 39 (450)
T PRK02472 3 TITTFQNKKVLVLGLAKSGYAAAKLLHKLGANVTVND 39 (450)
T ss_pred CCCCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEE
T ss_conf 6303589989999778999999999998869899984
No 259
>pfam05430 DUF752 Protein of unknown function (DUF752). This family contains several uncharacterized bacterial proteins with no known function.
Probab=41.91 E-value=28 Score=15.98 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=56.4
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHH
Q ss_conf 99999750104897599965388111355312387488730589998323116862365333656775472020022024
Q gi|254780582|r 25 SKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHY 104 (242)
Q Consensus 25 ~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~ 104 (242)
.+.+..+-+...|.+-+.+..| +....+.+.++.+.+ +--+..+|++++-.
T Consensus 8 ~~L~~~yP~~~~G~hri~f~~g---------~v~L~L~~GDa~~~l-------------------~~l~~~~DawflDg- 58 (124)
T pfam05430 8 EALLKQWPLPPAGCHRIEFAGG---------RVTLDLWFGDARAAL-------------------PELDFKADAWFLDG- 58 (124)
T ss_pred HHHHHHCCCCCCCEEEEEECCC---------CEEEEEEECCHHHHH-------------------HHCCCCEEEEEECC-
T ss_conf 9999838977997189996699---------689999964099998-------------------84623010999779-
Q ss_pred HHHHCCH----HHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEE
Q ss_conf 7752299----999999998469998899973387740345653276656557888999999962876212578
Q gi|254780582|r 105 LEFAEDP----FLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSR 174 (242)
Q Consensus 105 LE~~~dp----~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~ 174 (242)
+--..|| ..+++++.|.+++||.+. ++ -+...+++-|..+||+++....
T Consensus 59 FsP~~nPemWs~~~f~~i~~~~~~~~~l~--Ty-------------------s~a~~Vr~~L~~aGF~v~k~~G 111 (124)
T pfam05430 59 FSPAKNPEMWTVEFFALLARRSKPGGTLA--TY-------------------SSAGFVRRGLIAAGFHVGKRPG 111 (124)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCEEE--EE-------------------ECCHHHHHHHHHCCCEEEECCC
T ss_conf 89531810321999999999726898899--87-------------------5568999999987988997898
No 260
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=41.10 E-value=29 Score=15.90 Aligned_cols=134 Identities=12% Similarity=0.073 Sum_probs=72.2
Q ss_pred CCCCCCCEEEEECCCC-CHHH---HHHHCCCCEEEEEECHHHHHHHHHCCCCCEEEECHHHCC-------CCCCCCCCHH
Q ss_conf 0104897599965388-1113---553123874887305899983231168623653336567-------7547202002
Q gi|254780582|r 32 WDDVTGCRLLGLGYAI-PFFS---CFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP-------LADSSVDCVL 100 (242)
Q Consensus 32 l~~~~g~~vLdiGcg~-g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LP-------f~~~sfD~Vi 100 (242)
..-.+|.++.-+|||. |.-. .......+.+++|....-.....+-.....+... +..+ +.+.-.|
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~-~~~~vv~~i~~~T~gG~d--- 256 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK-EVDDVVEAIVELTDGGAD--- 256 (366)
T ss_pred CCCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCEEECCC-CHHHHHHHHHHHCCCCCC---
T ss_conf 4689998489990427669999989874885499993777899999863982465540-025489999986278877---
Q ss_pred HHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC---------CHHHHHH--CCCCCCCC-CCHHHHHHHHHHCCCC
Q ss_conf 2024775229999999999846999889997338774---------0345653--27665655-7888999999962876
Q gi|254780582|r 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRG---------MWARMEH--TPFGSGQP-YSWYQMISLLREANFT 168 (242)
Q Consensus 101 ~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s---------~w~~~~~--~~~~~~r~-~~~~~l~~~l~~~gf~ 168 (242)
+++|.+.+.. +++.+...+.++|..++++....+ +-..+.+ ..++..++ .--.++.+|-.+--|.
T Consensus 257 --~~~e~~G~~~-~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~ 333 (366)
T COG1062 257 --YAFECVGNVE-VMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLP 333 (366)
T ss_pred --EEEECCCCHH-HHHHHHHHHHCCCEEEEEECCCCCCEECCCHHHEECCCEEEEEEECCCCCCCHHHHHHHHHHCCCCC
T ss_conf --8999259989-9999999874378189995279875420276880415579887505766601016799999849986
Q ss_pred CEEE
Q ss_conf 2125
Q gi|254780582|r 169 LSIT 172 (242)
Q Consensus 169 ~~~~ 172 (242)
++..
T Consensus 334 ~d~l 337 (366)
T COG1062 334 LDRL 337 (366)
T ss_pred HHHH
T ss_conf 6777
No 261
>KOG0822 consensus
Probab=39.79 E-value=30 Score=15.78 Aligned_cols=126 Identities=12% Similarity=0.053 Sum_probs=67.5
Q ss_pred CCHHHHHHHHCCHHH-HHHHHHHHHHHHHHCCCCCC---CEEEEECCCCCHHH-HHH---HCCCCE---EEEEECHHHHH
Q ss_conf 678899996128898-99999999999975010489---75999653881113-553---123874---88730589998
Q gi|254780582|r 3 VDIVELRQFYSSFLG-KCTTDAISKVLSTTWDDVTG---CRLLGLGYAIPFFS-CFH---GKVERT---LAFMPAGQGAT 71 (242)
Q Consensus 3 ~di~~l~~wY~s~~G-~~~~~~~~~~l~~~l~~~~g---~~vLdiGcg~g~~~-~~~---~~~~~~---~~~~~~~~~~~ 71 (242)
+|.+.++-|-+.+.- ...++++...|.+..++... ..++-+|.|-|-+- ..+ ....+. .++.-.+++..
T Consensus 330 Le~~TYetFEkD~VKY~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAiv 409 (649)
T KOG0822 330 LENQTYETFEKDPVKYDQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIV 409 (649)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCHHH
T ss_conf 44443556514635799999999999975475011473289999638876078899999987247157999933854404
Q ss_pred HHHH------CCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCC--HHHHHHHHHHHCCCCCEE
Q ss_conf 3231------16862365333656775472020022024775229--999999999846999889
Q gi|254780582|r 72 NWPD------QYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAED--PFLMLHEIWRVLTSGGRM 128 (242)
Q Consensus 72 ~~~~------~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~d--p~~~L~Ei~RvLkPgG~l 128 (242)
.... ......+-+|...++-+.+..|++|+--.=-|-+| --++|.-+.+.|||+|.-
T Consensus 410 tL~~~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSELLGSFGDNELSPECLDG~q~fLkpdgIs 474 (649)
T KOG0822 410 TLQNRNFECWDNRVTIISSDMRKWNAPREQADIIVSELLGSFGDNELSPECLDGAQKFLKPDGIS 474 (649)
T ss_pred HHHHHCHHHHCCEEEEEECCCCCCCCCHHHCCCHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCEE
T ss_conf 24542436546816999343124688444212039976422467667977877788515888557
No 262
>COG3184 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.19 E-value=18 Score=17.04 Aligned_cols=58 Identities=10% Similarity=0.047 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHCCHHHHHHHH--HHHCCCCCEEEEEECCCCCCHHHHH-HCCCCCCCCCCHHHHHHHHHH
Q ss_conf 02002202477522999999999--9846999889997338774034565-327665655788899999996
Q gi|254780582|r 96 VDCVLMVHYLEFAEDPFLMLHEI--WRVLTSGGRMIVVVPNKRGMWARME-HTPFGSGQPYSWYQMISLLRE 164 (242)
Q Consensus 96 fD~Vi~~h~LE~~~dp~~~L~Ei--~RvLkPgG~lii~~~n~~s~w~~~~-~~~~~~~r~~~~~~l~~~l~~ 164 (242)
++--...+.++-.+|....+-|- .++|+ ..+-|.-.. ....-+.+-|+..+|...-.-
T Consensus 59 ~a~~l~~~liqa~p~~~~~i~~r~~ekal~-----------lA~~~~dle~e~~~~Ya~~FT~eEl~ai~aF 119 (183)
T COG3184 59 YAQMLAAELIQAKPDQQALILERYDEKALK-----------LAPRRADLEREAALLYAKIFTEEELNAITAF 119 (183)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHH-----------HCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 999999887644957899999999999998-----------6500877519999999986479999999999
No 263
>KOG1501 consensus
Probab=38.88 E-value=31 Score=15.70 Aligned_cols=107 Identities=11% Similarity=0.013 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHCCCCCCC--EEEEECCCCCHHHHHHHCCC--CEEEEEECHHHHHHHH---HCCCCCE----EEECHHH
Q ss_conf 9999999999750104897--59996538811135531238--7488730589998323---1168623----6533365
Q gi|254780582|r 20 TTDAISKVLSTTWDDVTGC--RLLGLGYAIPFFSCFHGKVE--RTLAFMPAGQGATNWP---DQYFSST----ALVSEGN 88 (242)
Q Consensus 20 ~~~~~~~~l~~~l~~~~g~--~vLdiGcg~g~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~----~~~d~~~ 88 (242)
++..+...+.+-.....+. .+||||.|+|+++....+.+ .+.++..-..++...+ ..++-.. +.-...+
T Consensus 48 y~~gi~~tIte~kh~~~~gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501 48 YRLGIEKTITEPKHVLDIGKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred HHHHHHHHHCCCCEECCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEEHHHCHHHHHHHHHHHCCCCCCCEEEECCCCCE
T ss_conf 99888987356201136743899972688108999988735770775212221899999988418876522662036631
Q ss_pred CCCC-CCCCCCHHHHHHH-HHHCC-HHHHHHHHHHHCCCCC
Q ss_conf 6775-4720200220247-75229-9999999998469998
Q gi|254780582|r 89 LPLA-DSSVDCVLMVHYL-EFAED-PFLMLHEIWRVLTSGG 126 (242)
Q Consensus 89 LPf~-~~sfD~Vi~~h~L-E~~~d-p~~~L~Ei~RvLkPgG 126 (242)
+..- ...-|+++.-... |.+.. .-..++++++.|.-+|
T Consensus 128 v~vg~~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~n 168 (636)
T KOG1501 128 VKVGGSSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDN 168 (636)
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
T ss_conf 55557624443457665455522343043899999862368
No 264
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=34.88 E-value=17 Score=17.25 Aligned_cols=62 Identities=19% Similarity=0.040 Sum_probs=43.4
Q ss_pred HCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 229999999999846999889997338774034565327665655788899999996287621
Q gi|254780582|r 108 AEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLS 170 (242)
Q Consensus 108 ~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~ 170 (242)
++|-...|.|+..+++.-|.=|+++.-...--...+ ...-..+-..+..+.+.|+..||++.
T Consensus 8 V~Dr~G~La~va~i~~~~~iNI~Sv~vyp~~~~~~~-ilv~Rv~T~~p~~li~~L~~~Gy~Vl 69 (72)
T cd04883 8 VPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNK-ILVFRVQTMNPRPIIEDLRRAGYEVL 69 (72)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEE-EEEEEECCCCHHHHHHHHHHCCCEEC
T ss_conf 579867299999999975975899998416889858-99999725996999999998879712
No 265
>TIGR01743 purR_Bsub pur operon repressor; InterPro: IPR010078 This entry represents the pur operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.; GO: 0003677 DNA binding, 0016564 transcription repressor activity, 0016481 negative regulation of transcription, 0045982 negative regulation of purine base metabolic process.
Probab=33.76 E-value=5.5 Score=20.01 Aligned_cols=14 Identities=29% Similarity=0.527 Sum_probs=8.5
Q ss_pred CCCCCCCCCHHHHH
Q ss_conf 77547202002202
Q gi|254780582|r 90 PLADSSVDCVLMVH 103 (242)
Q Consensus 90 Pf~~~sfD~Vi~~h 103 (242)
+|.|..+|+|+...
T Consensus 123 ~F~d~~ID~V~TV~ 136 (269)
T TIGR01743 123 VFIDKEIDAVMTVE 136 (269)
T ss_pred HCCCCCCCEEEEEE
T ss_conf 32685578789952
No 266
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=32.46 E-value=40 Score=15.10 Aligned_cols=85 Identities=11% Similarity=0.042 Sum_probs=48.9
Q ss_pred CEEEEECCCC--CHHHHHHHCCC---CEEEEEECHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHHHHHHHHHCCHH
Q ss_conf 7599965388--11135531238---748873058999832311686236533365677547202002202477522999
Q gi|254780582|r 38 CRLLGLGYAI--PFFSCFHGKVE---RTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPF 112 (242)
Q Consensus 38 ~~vLdiGcg~--g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~dp~ 112 (242)
.+|+-+|.|. |-+...+.+.+ +.++.+.+.+................+..+. -...|+||+..-.+. -.
T Consensus 7 ~~I~IiGlGLIGgSlA~alk~~~~~~~I~g~d~~~~~l~~A~~~g~id~~~~~~~e~---~~~~DlIilatPv~~---~~ 80 (307)
T PRK07502 7 DRVALIGLGLIGSSLARAIRRQGLAGEIVGAARSAETRARARELGLGDRVTTSAAEA---VKGADLVILCVPVGA---SG 80 (307)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHCCCCCHHCCCHHHH---HCCCCEEEEECCHHH---HH
T ss_conf 668999278799999999985499857999849999999999869975112777664---045897999178999---99
Q ss_pred HHHHHHHHHCCCCCEE
Q ss_conf 9999999846999889
Q gi|254780582|r 113 LMLHEIWRVLTSGGRM 128 (242)
Q Consensus 113 ~~L~Ei~RvLkPgG~l 128 (242)
.+++++...++|+..+
T Consensus 81 ~vl~~l~~~l~~~~iv 96 (307)
T PRK07502 81 AVAAEIAPHLKPGAIV 96 (307)
T ss_pred HHHHHHHHHCCCCCEE
T ss_conf 9999998555899689
No 267
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=32.01 E-value=40 Score=15.05 Aligned_cols=92 Identities=16% Similarity=0.169 Sum_probs=50.0
Q ss_pred CCEEEEECCCC-C-HHHHHHHCCCCEEEEEECHHHHHHHHHCC-------CCCE-----EEECHHHCCCCCCCCCCHHHH
Q ss_conf 97599965388-1-11355312387488730589998323116-------8623-----653336567754720200220
Q gi|254780582|r 37 GCRLLGLGYAI-P-FFSCFHGKVERTLAFMPAGQGATNWPDQY-------FSST-----ALVSEGNLPLADSSVDCVLMV 102 (242)
Q Consensus 37 g~~vLdiGcg~-g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-----~~~d~~~LPf~~~sfD~Vi~~ 102 (242)
..+|+-+|+|. | ++...+...++.+.+.-.+.. ....... .... ...+.+++ ..+|+|++.
T Consensus 5 ~~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~~~-~ai~~~Gl~i~~~~g~~~~~~~~~~~~~~~~----~~~D~viv~ 79 (313)
T PRK06249 5 TPRIAIIGTGAIGGFYGAMLARAGFDVHFLLRSDY-EAVRENGLQVDSVHGDFHLPQVQAYRSAEDM----PPCDWVLVG 79 (313)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHH-HHHHHCCEEEEECCCCEEECCCEEECCHHHC----CCCCEEEEE
T ss_conf 88899999149999999999966995699967559-9998688599966982897684023697783----996589995
Q ss_pred HHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCC
Q ss_conf 24775229999999999846999889997338774
Q gi|254780582|r 103 HYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRG 137 (242)
Q Consensus 103 h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s 137 (242)
- -..+..++++.+..++.|++.+ ++.=|-.+
T Consensus 80 v---Ks~~~~~~~~~l~~~~~~~t~i-l~lQNG~g 110 (313)
T PRK06249 80 L---KTTANALLAPLIPQVAAPGAKV-LLLQNGLG 110 (313)
T ss_pred C---CCCCHHHHHHHHHHHCCCCCEE-EEECCCCC
T ss_conf 3---6677899999878644899589-99447666
No 268
>COG4422 Bacteriophage protein gp37 [Function unknown]
Probab=31.94 E-value=35 Score=15.43 Aligned_cols=92 Identities=18% Similarity=0.311 Sum_probs=49.7
Q ss_pred HHCCCCCCCEEEEECCCCCHHHHHHHCC----CCEEEEEECHHHHHHHHHCCCCCEEEECHHHC--CCCCCCCCCH--HH
Q ss_conf 7501048975999653881113553123----87488730589998323116862365333656--7754720200--22
Q gi|254780582|r 30 TTWDDVTGCRLLGLGYAIPFFSCFHGKV----ERTLAFMPAGQGATNWPDQYFSSTALVSEGNL--PLADSSVDCV--LM 101 (242)
Q Consensus 30 ~~l~~~~g~~vLdiGcg~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~L--Pf~~~sfD~V--i~ 101 (242)
.-|....|.++|.-||..-|.....++. ......++-.. ..+..-.-.+..|...| |+.=.+=-.| -+
T Consensus 12 aTWNPVaGCti~saGCtnCYAM~mA~RLeAMg~dKY~GltRts----G~ra~wtG~v~~d~~sL~iP~tW~kPR~vFVNS 87 (250)
T COG4422 12 ATWNPVAGCTILSAGCTNCYAMRMAKRLEAMGVDKYQGLTRTS----GGRAKWTGVVTIDPKSLDIPATWSKPRRVFVNS 87 (250)
T ss_pred CCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCCCC----CCCCCEEEEEEECHHHCCCCCCCCCCCEEEEHH
T ss_conf 6446556745416776408999999999861722214765456----875414667886724406864357870541010
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCC
Q ss_conf 024775229999999999846999
Q gi|254780582|r 102 VHYLEFAEDPFLMLHEIWRVLTSG 125 (242)
Q Consensus 102 ~h~LE~~~dp~~~L~Ei~RvLkPg 125 (242)
+.-|=|.+-|..+++|+|.|++.-
T Consensus 88 MsDLFH~~V~~~FI~~Vw~VM~~T 111 (250)
T COG4422 88 MSDLFHADVPLDFIREVWEVMRAT 111 (250)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 677730226599999999999858
No 269
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=30.29 E-value=26 Score=16.17 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCEEEECH---HHCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf 62365333---656775472020022024775229999999999846999889997338774034565327665655788
Q gi|254780582|r 79 SSTALVSE---GNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSW 155 (242)
Q Consensus 79 ~~~~~~d~---~~LPf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~ 155 (242)
..+.++.. |++-=..--||+||.. +|--..+..+-|||-|-| +-|||-+-= -. .-.
T Consensus 89 GAD~VG~~DLie~Ik~G~~dFDV~IAT------PDmM~~VGkLG~iLGPRG----LMPNPK~GT--VT---------~dv 147 (227)
T TIGR01169 89 GADYVGSDDLIEKIKKGWLDFDVVIAT------PDMMRKVGKLGRILGPRG----LMPNPKTGT--VT---------ADV 147 (227)
T ss_pred CCEEECCHHHHHHHHCCCCCEEEEECC------HHHHHHHHHHHHHCCCCC----CCCCCCCCC--CC---------HHH
T ss_conf 980444887999995589850258827------577688763310047888----475359665--22---------437
Q ss_pred HHHHHHHHH--CCCCCEEEEEEEEEC----CCCC-HHHHHHHHHHHHHHHHHHHHCCEEEEE
Q ss_conf 899999996--287621257898308----6552-467631589999997611321438999
Q gi|254780582|r 156 YQMISLLRE--ANFTLSITSRSLFFP----PTHK-KCILKLWSVFEKIGNIFGPGFAGIYVI 210 (242)
Q Consensus 156 ~~l~~~l~~--~gf~~~~~~~~~~~p----p~~~-~~~~~~~~~~e~~~~~~~p~~g~~~~i 210 (242)
.+-..-++. -.|+.+. ..-++.+ -|.. ...-+...+++.+-+.-++..-|.|+-
T Consensus 148 a~Av~~~K~G~vefR~DK-~G~iH~~~GK~SF~~~~L~eN~~Al~~~i~k~KP~~~KG~Yik 208 (227)
T TIGR01169 148 AKAVKEAKKGRVEFRADK-AGNIHAPIGKVSFDEEKLKENLEALLDAIKKAKPSGAKGQYIK 208 (227)
T ss_pred HHHHHHHHCCCEEEEECC-CEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 999998727950465158-5158777526668889999999999999985088301230788
No 270
>PHA02056 putative methyltransferase
Probab=29.57 E-value=45 Score=14.81 Aligned_cols=128 Identities=11% Similarity=0.009 Sum_probs=63.1
Q ss_pred CCEEEEECCCCCHHHHHHHC---CCCEEEEEECHHHHHHHHHCCCC-CEEEECHHHCCCCCCCCCCHHHHHHHHHHC--C
Q ss_conf 97599965388111355312---38748873058999832311686-236533365677547202002202477522--9
Q gi|254780582|r 37 GCRLLGLGYAIPFFSCFHGK---VERTLAFMPAGQGATNWPDQYFS-STALVSEGNLPLADSSVDCVLMVHYLEFAE--D 110 (242)
Q Consensus 37 g~~vLdiGcg~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~LPf~~~sfD~Vi~~h~LE~~~--d 110 (242)
+.+++|+++|.|.++-.+.. ..+.++..-.+..+....+..+. .-+.+|.-+.++. +.||++|+.--+--+. |
T Consensus 65 tG~iiDLCAGIG~LSy~~~~r~kp~~ivCVErN~~y~~vGkkilPeAtWI~~Dv~~~~~~-~~FD~aIsNPPFG~i~~~~ 143 (279)
T PHA02056 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESN-EKFDVVISNPPFGKINTTD 143 (279)
T ss_pred CCEEEEECCCCCHHHHHHHHCCCCCCEEEEEECHHHHHHHHHCCCCCEEEECCEECCCCC-CCEEEEECCCCCCCCCCCC
T ss_conf 853888214612357999850688635899408579886432076402773231303566-6200453389976433333
Q ss_pred HH------------HHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCE
Q ss_conf 99------------9999999846999889997338774034565327665655788899999996287621
Q gi|254780582|r 111 PF------------LMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLS 170 (242)
Q Consensus 111 p~------------~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~ 170 (242)
.. .++ ++..-++.-|.+||---....-.+. .+.... .-..+....|+++-|...+
T Consensus 144 sK~~~~ytg~~FE~~Vi-~~a~~~Ad~G~FIiPqmSA~F~YSG---~~~y~~-~~~s~k~~Kf~~qTGl~~~ 210 (279)
T PHA02056 144 TKDVFEYTGGEFEFKVM-TLGQKFADVGYFIVPSGSAGFAYSG---RPYYDG-TMKSNKYLKWSKQTGLVTY 210 (279)
T ss_pred CCCCCCCCCCCEEEEEE-HHHHHHHCCCEEEEECCCCCCCCCC---CCCCCC-CCCCHHHHHHHHHCCEEEC
T ss_conf 57886645761157732-4566763063499614666767578---733366-6664266767864474740
No 271
>pfam06557 DUF1122 Protein of unknown function (DUF1122). This family consists of several hypothetical archaeal and bacterial proteins of unknown function.
Probab=29.33 E-value=45 Score=14.79 Aligned_cols=60 Identities=23% Similarity=0.212 Sum_probs=41.4
Q ss_pred HHHHHHHHHHCCCCCEEEEEECC-CCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEEEECC
Q ss_conf 99999999846999889997338-7740345653276656557888999999962876212578983086
Q gi|254780582|r 112 FLMLHEIWRVLTSGGRMIVVVPN-KRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180 (242)
Q Consensus 112 ~~~L~Ei~RvLkPgG~lii~~~n-~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~~~~~~pp 180 (242)
..+++=+.+.|.|||+|++.-.- +-..+.+.+ +-+....+|...|..+||+...-.| +|-
T Consensus 66 ~~l~~l~~~~l~pgg~lfVeY~~D~eT~~~L~~------G~pp~~TrLG~~Ll~~GFtwfKdWY---~PE 126 (170)
T pfam06557 66 AELFDFLSDYLPPGGRLFVEYVWDKETMYELQR------GFPPADTRLGFSLLKAGFTWFKDWY---YPE 126 (170)
T ss_pred HHHHHHHHHHCCCCCEEEEEEECCHHHHHHHHC------CCCCCCCHHHHHHHHCCCEEEEEEE---CCC
T ss_conf 999999999649897499999628889999975------8994215457999977867881115---468
No 272
>pfam06618 DUF1148 Protein of unknown function (DUF1148). This family consists of several Maize streak virus proteins of unknown function.
Probab=29.26 E-value=28 Score=15.93 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=23.0
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHH
Q ss_conf 699988999733877403456532766565578889
Q gi|254780582|r 122 LTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQ 157 (242)
Q Consensus 122 LkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~ 157 (242)
.-|+|.+++++|.-+|.|-.++...--.-..|++.+
T Consensus 5 tppegtvimvvpacwsvwiwrdglsallpalfspae 40 (114)
T pfam06618 5 TPPEGTVIMVVPACWSVWIWRDGLSALLPALFSPAE 40 (114)
T ss_pred CCCCCEEEEEECCCEEEEEEECCHHHHHHHHCCCHH
T ss_conf 899863999960101887540758777577439200
No 273
>pfam06816 NOD NOTCH protein. NOTCH signalling plays a fundamental role during a great number of developmental processes in multicellular animals. NOD and NODP represent a region present in many NOTCH proteins and NOTCH homologs in multiple species such as NOTCH2 and NOTCH3, LIN12, SC1 and TAN1. Role of NOD domain remains to be elucidated.
Probab=26.47 E-value=38 Score=15.21 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEE
Q ss_conf 75472020022024775229999999999846999889
Q gi|254780582|r 91 LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRM 128 (242)
Q Consensus 91 f~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~l 128 (242)
++.+..-+|+....-|+-.+..++|+|+.++|+-.=++
T Consensus 4 lA~G~lvivvlm~p~ef~~~~~~FLr~ls~~Lrt~v~i 41 (56)
T pfam06816 4 LAEGTLVIVVLIPPEELRNNSVQFLRELSHLLRTNVRI 41 (56)
T ss_pred CCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_conf 45525999998099999987989999999876306999
No 274
>pfam05971 Methyltransf_10 Protein of unknown function (DUF890). This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of this family is unknown.
Probab=26.31 E-value=51 Score=14.47 Aligned_cols=97 Identities=11% Similarity=-0.081 Sum_probs=43.2
Q ss_pred HHHHHHHHHHCC-CCCCCEEEEECCCCCHHHHHHHC--CC-CEEEEEECHHHHHHHHHCCCCC-----EE----EECHHH
Q ss_conf 999999997501-04897599965388111355312--38-7488730589998323116862-----36----533365
Q gi|254780582|r 22 DAISKVLSTTWD-DVTGCRLLGLGYAIPFFSCFHGK--VE-RTLAFMPAGQGATNWPDQYFSS-----TA----LVSEGN 88 (242)
Q Consensus 22 ~~~~~~l~~~l~-~~~g~~vLdiGcg~g~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~-----~~----~~d~~~ 88 (242)
..+.+.|...-. ...+.++||||+|.--.-.++.. .+ +-++.|.+...+..++..-... .+ +-+...
T Consensus 50 h~l~DLL~~~~~~~~~~v~gLDIGtGAscIYPLLg~~~y~W~fvgtDId~~sl~~A~~nv~~N~~L~~~I~l~~q~~~~~ 129 (254)
T pfam05971 50 HWVADLLGHQDSDIPTLRRALDIGTGANCIYPLLGVTEYGWRFVGSEVDPQSLNSAKAIVEANPNLSDAIELRRQPQSTL 129 (254)
T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCHHCEEEEECCCCCC
T ss_conf 99999975427887777467773366415777540400486379762798999999999985833231169996378110
Q ss_pred C----CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 6----7754720200220247752299999999998
Q gi|254780582|r 89 L----PLADSSVDCVLMVHYLEFAEDPFLMLHEIWR 120 (242)
Q Consensus 89 L----Pf~~~sfD~Vi~~h~LE~~~dp~~~L~Ei~R 120 (242)
+ --+++.||.++|.=-.. ++..++.....|
T Consensus 130 if~gii~~~e~fdftmCNPPF~--~S~~ea~~~~~r 163 (254)
T pfam05971 130 IFNGLIGENERYDFTLCNPPFH--ASLAEAKGGSSR 163 (254)
T ss_pred CCCCCCCCCCCEEEEECCCCCC--CCHHHHHHHHHC
T ss_conf 2234468766066630379866--788888777644
No 275
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.85 E-value=52 Score=14.42 Aligned_cols=37 Identities=8% Similarity=-0.025 Sum_probs=19.2
Q ss_pred CCCCCCCEEEEECCC-CCHH-HHHHHCCC-CEEEEEECHH
Q ss_conf 010489759996538-8111-35531238-7488730589
Q gi|254780582|r 32 WDDVTGCRLLGLGYA-IPFF-SCFHGKVE-RTLAFMPAGQ 68 (242)
Q Consensus 32 l~~~~g~~vLdiGcg-~g~~-~~~~~~~~-~~~~~~~~~~ 68 (242)
+...+|++|+-+|.| +|.- ..++...+ .+.+.|..+.
T Consensus 4 ~~~~~gk~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~~~ 43 (457)
T PRK01390 4 VTSFKGKTVALFGLGGSGLATARALKAGGAEVIAWDDNPD 43 (457)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCH
T ss_conf 3202899899994369999999999978997999939920
No 276
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=24.46 E-value=55 Score=14.27 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=65.4
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHCC-------CCEEEEEECHHHH----HHH
Q ss_conf 88999961288989999999999997501048975999653881113553123-------8748873058999----832
Q gi|254780582|r 5 IVELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKV-------ERTLAFMPAGQGA----TNW 73 (242)
Q Consensus 5 i~~l~~wY~s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~-------~~~~~~~~~~~~~----~~~ 73 (242)
|.+|-++|-|.-...+.+.....+.+... +.+++|+|.|+..-...+-+. .+.+-+|.+..-+ ...
T Consensus 50 I~~LPEYYpTRtEaaIl~~~a~Eia~~~g---~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai 126 (321)
T COG4301 50 ITRLPEYYPTRTEAAILQARAAEIASITG---ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAI 126 (321)
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHHHHHHC---CCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
T ss_conf 96163006732689999999999997608---654897168962889999997521377403554022289999899999
Q ss_pred HHCCCCCEE---EECH----HHCCCCCCCCCC-HHHHHHH-HHHCCH-HHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 311686236---5333----656775472020-0220247-752299-99999999846999889997338
Q gi|254780582|r 74 PDQYFSSTA---LVSE----GNLPLADSSVDC-VLMVHYL-EFAEDP-FLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 74 ~~~~~~~~~---~~d~----~~LPf~~~sfD~-Vi~~h~L-E~~~dp-~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
........+ .+|. .++| ..+--+ ++.-.+| .+.+++ ..+|..+..+|.||-.+++.+-.
T Consensus 127 ~~~y~~l~v~~l~~~~~~~La~~~--~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl 195 (321)
T COG4301 127 LREYPGLEVNALCGDYELALAELP--RGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDL 195 (321)
T ss_pred HHHCCCCEEEEHHHHHHHHHHCCC--CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 986799767631256888875156--887289998365336888678999999998428976669981212
No 277
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=24.39 E-value=56 Score=14.26 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=60.5
Q ss_pred HHHHHHCCCCCCCEEEEECCCC-CHH-HHHHHCCC-CEEEEEE-CHHHHHHHHHCCCCCEEEECHHHCCCCCCCCCCHHH
Q ss_conf 9999750104897599965388-111-35531238-7488730-589998323116862365333656775472020022
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAI-PFF-SCFHGKVE-RTLAFMP-AGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLM 101 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~-g~~-~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~LPf~~~sfD~Vi~ 101 (242)
+...+.+++..+.++|-+|.|. |.+ ...+...+ ..+.+.- ....+.......+. -..+.++++-.=..+|+||+
T Consensus 167 ~~a~~~~~~l~~~~vLviGaGem~~l~~~~L~~~g~~~i~v~nRt~~ra~~la~~~g~--~~~~~~~l~~~l~~~Dvvis 244 (311)
T cd05213 167 ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG--NAVPLDELLELLNEADVVIS 244 (311)
T ss_pred HHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCC--EEECHHHHHHHHHHCCEEEE
T ss_conf 9999871872116799986879999999999965998259976867899999997498--99729999999976899999
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHH
Q ss_conf 02477522999999999984699988999733877403456532766565578889999999
Q gi|254780582|r 102 VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLR 163 (242)
Q Consensus 102 ~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~ 163 (242)
... +++|....+++...-+....+++=.-.|.-.-..... .-....|....|.+..+
T Consensus 245 aT~---s~~~~~~~~~~~~~~~~~~~~iiDLavPRdid~~v~~--l~~v~L~~iDdL~~i~~ 301 (311)
T cd05213 245 ATG---APHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGE--LEGVRLYTIDDLEEVVE 301 (311)
T ss_pred ECC---CCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHCC--CCCEEEEEHHHHHHHHH
T ss_conf 279---9962035999975347997699991799987733477--69979987899999999
No 278
>PRK04148 hypothetical protein; Provisional
Probab=21.64 E-value=63 Score=13.94 Aligned_cols=95 Identities=9% Similarity=0.088 Sum_probs=45.9
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCH-HHHHHHCC-CCEEEEEECHHHHHHHHHCCCCCEEEECHHH--CCCCCCCCCC
Q ss_conf 999999975010489759996538811-13553123-8748873058999832311686236533365--6775472020
Q gi|254780582|r 23 AISKVLSTTWDDVTGCRLLGLGYAIPF-FSCFHGKV-ERTLAFMPAGQGATNWPDQYFSSTALVSEGN--LPLADSSVDC 98 (242)
Q Consensus 23 ~~~~~l~~~l~~~~g~~vLdiGcg~g~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--LPf~~~sfD~ 98 (242)
.+.+.+.+..++..+.+++++|-|.-+ -+..+.+. ..+++.|.....+.. +...+...+.-|..+ +-+- +..|+
T Consensus 3 ~iaeyI~~~y~~~~~~kIvEvGIGf~~~vA~~L~e~g~dv~~~Din~~aV~~-a~~~Gl~~v~DDif~P~l~iY-~~a~l 80 (135)
T PRK04148 3 TIAEYIARNYPHLKNGKIAELGIGFYFKVAKKLKESGFDVIVIDINKKAVEK-AKKLGLNAFVDDIFNPNLEIY-KNAKL 80 (135)
T ss_pred HHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEEECCHHHHHH-HHHCCCCEEECCCCCCCHHHH-CCCCE
T ss_conf 6999999854211287389992366678999998749988999576554322-123287637515889988885-17887
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 022024775229999999999846
Q gi|254780582|r 99 VLMVHYLEFAEDPFLMLHEIWRVL 122 (242)
Q Consensus 99 Vi~~h~LE~~~dp~~~L~Ei~RvL 122 (242)
+.+.- --.+-+..+-++.+-.
T Consensus 81 IYSIR---Pp~Elq~~il~lakkv 101 (135)
T PRK04148 81 IYSIR---PPRDLQPFILELAKKL 101 (135)
T ss_pred EEEEC---CCHHHHHHHHHHHHHC
T ss_conf 99818---9878889999999975
No 279
>pfam00107 ADH_zinc_N Zinc-binding dehydrogenase.
Probab=21.07 E-value=65 Score=13.87 Aligned_cols=35 Identities=29% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCCCHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 72020022024775229999999999846999889997338
Q gi|254780582|r 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 (242)
Q Consensus 94 ~sfD~Vi~~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n 134 (242)
..+|+|+- .+. -...++.+-+.++|+|++++.+.-
T Consensus 58 ~g~d~vid-----~~g-~~~~~~~~~~~~~~~G~iv~~G~~ 92 (131)
T pfam00107 58 RGVDVVID-----CVG-APATLEQALELLRPGGRVVVVGLP 92 (131)
T ss_pred CCCEEEEE-----CCC-CHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 77649886-----688-666799998753599789999467
No 280
>TIGR00507 aroE shikimate 5-dehydrogenase; InterPro: IPR011342 The shikimate pathway links the metabolism of carbohydrates to the biosynthesis of aromatic compounds and is essential for the biosynthesis of aromatic amino acids and other aromatic compounds in bacteria, eukaryotic microorganisms and plants . It is a seven-step pathway which converts phosphoenolpyruvate and erythrose 4-phosphate to chorismate, the common precursor for the synthesis of folic acid, ubiquinone, vitamins E and K, and aromatic amino acids. Since this pathway is absent in metazoans, which must therefore obtain the essential amino acids phenylalanine and tryptophan from their diet, the enzymes in this pathway are important targets for the development of novel herbicides and antimicrobial compounds. This entry represents shikimate 5-dehydrogenases from prokaryotes and functionally equivalent C-terminal domains from larger, multifunctional proteins, the majority of which have an N-terminal quinate dehydrogenase domain. These multifunctional proteins occur in plants, chlamydiae, planctomycetes and a limited number of marine proteobacteria. Shikimate 5-dehydrogenase catalyses the fourth step of the shikimate pathway, which is the NADP-dependent reduction of 3-dehydroshikimate to shikimate . Structural studies suggests that some shikimate dehydrogenases are monmers while others form homodimers , . Each shikimate dehydrogenase monomer forms a compact two-domain alpha/beta sandwich with a deep interdomain cleft. The N-terminal substrate-binding domain forms a three layer alpha-beta-alpha sandwich, while the C-terminal NADP-binding domain forms a nearly typical Rossman fold. The active site is thought to be located within the interdomain cleft, with substrate binding causing a conformational change which closes the active site cleft, forming a productive active site.; GO: 0004764 shikimate 5-dehydrogenase activity, 0050661 NADP binding.
Probab=20.16 E-value=68 Score=13.76 Aligned_cols=106 Identities=14% Similarity=0.126 Sum_probs=55.3
Q ss_pred HHHHCCCCC-CCEEEEECCCCC---HHHHHHHCCCCEEEEEE-----CHHHHHHHHH---CCCCCEEEECHHHCCCCCCC
Q ss_conf 997501048-975999653881---11355312387488730-----5899983231---16862365333656775472
Q gi|254780582|r 28 LSTTWDDVT-GCRLLGLGYAIP---FFSCFHGKVERTLAFMP-----AGQGATNWPD---QYFSSTALVSEGNLPLADSS 95 (242)
Q Consensus 28 l~~~l~~~~-g~~vLdiGcg~g---~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~d~~~LPf~~~s 95 (242)
|.+.+.... ++++|=+|+|.- .+..+.......+.+.- +.+.+...++ ...........+++|...+.
T Consensus 111 L~~~l~~l~~~~~~li~GAGGAa~a~a~~L~~~t~~~~~i~NRT~~ka~~La~~~~~kln~~~G~~~~~~~~~~~l~~G~ 190 (286)
T TIGR00507 111 LEQELSKLKPNQRVLIIGAGGAAKAVALELLKATDCNVIIANRTVEKAEELAERFQRKLNKKYGEIQAFSLDEVPLHKGK 190 (286)
T ss_pred HHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 88874036899779999428678999999986009978998287789999999989885342485365211335555785
Q ss_pred CCCHHHHHHHHHHCCH--HHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 0200220247752299--9999999984699988999733877
Q gi|254780582|r 96 VDCVLMVHYLEFAEDP--FLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 96 fD~Vi~~h~LE~~~dp--~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
||+||=....=-..+- ..+.. ..++++-.++=++-||.
T Consensus 191 ~DlIINATs~G~~~~~~~~~v~~---~~~~~~~~v~D~~Y~p~ 230 (286)
T TIGR00507 191 VDLIINATSAGMSGNIDEPPVPA---ELLKEGKLVYDLVYNPL 230 (286)
T ss_pred EEEEEECCCCCCCCCCCCCCCCH---HHCCCCCEEEECCCCCC
T ss_conf 67998546778888988745685---34168868995146886
No 281
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg^2+ . 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin .; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid and derivative biosynthetic process.
Probab=20.03 E-value=44 Score=14.84 Aligned_cols=12 Identities=25% Similarity=0.636 Sum_probs=4.5
Q ss_pred CCCCCHHHHHHH
Q ss_conf 538811135531
Q gi|254780582|r 44 GYAIPFFSCFHG 55 (242)
Q Consensus 44 Gcg~g~~~~~~~ 55 (242)
|+|.||++.+++
T Consensus 134 GyGgGyYDR~L~ 145 (183)
T TIGR02727 134 GYGGGYYDRFLA 145 (183)
T ss_pred ECCCCHHHHHHH
T ss_conf 056874678755
Done!