HHsearch alignment for GI: 254780582 and conserved domain: pfam05175

>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.06  E-value=6.4e-10  Score=76.68  Aligned_cols=110  Identities=12%  Similarity=0.093  Sum_probs=71.0

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHCC-----C-CCEEEECHHHCCCCCCCC
Q ss_conf             999975010489759996538811135531238---7488730589998323116-----8-623653336567754720
Q gi|254780582|r   26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQY-----F-SSTALVSEGNLPLADSSV   96 (242)
Q Consensus        26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~-~~~~~~d~~~LPf~~~sf   96 (242)
T Consensus        21 ~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~-~~~~~~f   99 (170)
T pfam05175        21 RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYS-AVEPGKF   99 (170)
T ss_pred             HHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCE
T ss_conf             999970897789949997764829899999978986798515449999999999998099848999744666-5778866


Q ss_pred             CCHHHH---HHHHHH--CCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             200220---247752--2999999999984699988999733877
Q gi|254780582|r   97 DCVLMV---HYLEFA--EDPFLMLHEIWRVLTSGGRMIVVVPNKR  136 (242)
Q Consensus        97 D~Vi~~---h~LE~~--~dp~~~L~Ei~RvLkPgG~lii~~~n~~  136 (242)
T Consensus       100 D~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l  144 (170)
T pfam05175       100 DLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIVANRHL  144 (170)
T ss_pred             EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf             089989772114203289999999999996164979999998999