HHsearch alignment for GI: 254780582 and conserved domain: pfam05175
>pfam05175 MTS Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases .
Probab=99.06 E-value=6.4e-10 Score=76.68 Aligned_cols=110 Identities=12% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHCCC---CEEEEEECHHHHHHHHHCC-----C-CCEEEECHHHCCCCCCCC
Q ss_conf 999975010489759996538811135531238---7488730589998323116-----8-623653336567754720
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVE---RTLAFMPAGQGATNWPDQY-----F-SSTALVSEGNLPLADSSV 96 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-----~-~~~~~~d~~~LPf~~~sf 96 (242)
T Consensus 21 ~lLl~~l~~~~~g~vLDlGcG~G~i~~~la~~~p~~~v~~vDi~~~Al~~a~~N~~~n~l~~v~v~~~D~~~-~~~~~~f 99 (170)
T pfam05175 21 RLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLYS-AVEPGKF 99 (170)
T ss_pred HHHHHCCCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHCCCEEEEEECCCCC-CCCCCCE
T ss_conf 999970897789949997764829899999978986798515449999999999998099848999744666-5778866
Q ss_pred CCHHHH---HHHHHH--CCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 200220---247752--2999999999984699988999733877
Q gi|254780582|r 97 DCVLMV---HYLEFA--EDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 (242)
Q Consensus 97 D~Vi~~---h~LE~~--~dp~~~L~Ei~RvLkPgG~lii~~~n~~ 136 (242)
T Consensus 100 D~IvsNPP~h~g~~~~~~~~~~~i~~A~~~L~pgG~l~~V~n~~l 144 (170)
T pfam05175 100 DLIISNPPFHAGKATDYDVAQRFIAGAARHLKPGGELWIVANRHL 144 (170)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 089989772114203289999999999996164979999998999