HHsearch alignment for GI: 254780582 and conserved domain: pfam05401
>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=98.80 E-value=8.3e-09 Score=70.33 Aligned_cols=133 Identities=13% Similarity=0.069 Sum_probs=89.1
Q ss_pred HCCCCCCCEEEEECCCCCHHHHHHH-CCCCEEEEEECHHHHHHHHHCCCC----CEEEEC-HHHCCCCCCCCCCHHHHHH
Q ss_conf 5010489759996538811135531-238748873058999832311686----236533-3656775472020022024
Q gi|254780582|r 31 TWDDVTGCRLLGLGYAIPFFSCFHG-KVERTLAFMPAGQGATNWPDQYFS----STALVS-EGNLPLADSSVDCVLMVHY 104 (242)
Q Consensus 31 ~l~~~~g~~vLdiGcg~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~d-~~~LPf~~~sfD~Vi~~h~ 104 (242)
T Consensus 38 aLp~~ry~~alE~GCa~G~lT~~LA~RCdrLla~Dvs~~Av~~Ar~Rla~~~hV~v~~~~vp~~--wP~~~FDLIV~SEV 115 (201)
T pfam05401 38 SLAQGTIANALEVGCAAGAFTERLAPYCQRLTVIDVMPEAIARARLRMKKWSHISWIVSDVQQF--STNELFDLIVVAEV 115 (201)
T ss_pred HCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEECCCCCC--CCCCCEEEEEEEHH
T ss_conf 6783433002043566248789999987467321362999999999855799828982566665--99888627975147
Q ss_pred HHHHCC---HHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
Q ss_conf 775229---999999999846999889997338774034565327665655788899999996287621257
Q gi|254780582|r 105 LEFAED---PFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITS 173 (242)
Q Consensus 105 LE~~~d---p~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~~~~~~~~r~~~~~~l~~~l~~~gf~~~~~~ 173 (242)
T Consensus 116 lYYL~d~a~lr~~~~~~v~~LaP~G~Lvfgsarda~c---r---rwgh--~~gaetv~~~~~e~l~eve~~~ 179 (201)
T pfam05401 116 LYYLGDVAEMRGAVRNLVSMLAPDGQLVFGSARDANC---R---RWGH--VAGAETVIALLNESLREVERRE 179 (201)
T ss_pred HHHHCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHH---H---HHCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7861879999999999999718996599730451066---5---5101--1118999999998877887765