HHsearch alignment for GI: 254780582 and conserved domain: pfam07021
>pfam07021 MetW Methionine biosynthesis protein MetW. This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells.
Probab=99.83 E-value=1.3e-19 Score=131.96 Aligned_cols=144 Identities=19% Similarity=0.179 Sum_probs=109.3
Q ss_pred HHHHHHCCCCCCCEEEEECCCCCHHHHHHHC--CCCEEEEEECHHHHHHHHHCCCCCEEEECHHH--CCCCCCCCCCHHH
Q ss_conf 9999750104897599965388111355312--38748873058999832311686236533365--6775472020022
Q gi|254780582|r 26 KVLSTTWDDVTGCRLLGLGYAIPFFSCFHGK--VERTLAFMPAGQGATNWPDQYFSSTALVSEGN--LPLADSSVDCVLM 101 (242)
Q Consensus 26 ~~l~~~l~~~~g~~vLdiGcg~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--LPf~~~sfD~Vi~ 101 (242)
T Consensus 5 ~iI~~~I~--~~srVLDlGCG~G~ll~~L~~~k~v~~~GvEid~~~v~~a~~k-g~~Vi~~D~d~~l~~f~d~sFD~VIl 81 (193)
T pfam07021 5 RYIARLIP--PGSRVLDLGCGDGSLLYLLQEEKQVDGRGIELDAAGVAECVAK-GLSVIQGDADKGLEHFPDKSFDYVIL 81 (193)
T ss_pred HHHHHHCC--CCCEEEEECCCCCHHHHHHHHCCCCCEEEECCCHHHHHHHHHC-CCCEECCCHHHCHHHCCCCCCCEEEH
T ss_conf 99998658--9698998368898999999876698769833899999999864-79545077445974577678037869
Q ss_pred HHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHH-----HC------C-CC----CCCCCCHHHHHHHHHHC
Q ss_conf 024775229999999999846999889997338774034565-----32------7-66----56557888999999962
Q gi|254780582|r 102 VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARME-----HT------P-FG----SGQPYSWYQMISLLREA 165 (242)
Q Consensus 102 ~h~LE~~~dp~~~L~Ei~RvLkPgG~lii~~~n~~s~w~~~~-----~~------~-~~----~~r~~~~~~l~~~l~~~ 165 (242)
T Consensus 82 s~vLqhl~~P~~vL~EmlRV---gk~~IVSfPNf~hw~~R~~ll~~GrmPvt~~lp~~WydTpnih~~Ti~DFe~lc~~~ 158 (193)
T pfam07021 82 SQTLQATRNPREVLDELLRI---GRRAIVSFPNFGHWRVRWSLLSRGRMPVTDLLPYTWYDTPNIHFCTIRDFEELCEEL 158 (193)
T ss_pred HHHHHHHCCCHHHHHHHHHH---CCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 87998752819999998512---686999943614799999999478755589999761489984744599999999988
Q ss_pred CCCCEEEEEE
Q ss_conf 8762125789
Q gi|254780582|r 166 NFTLSITSRS 175 (242)
Q Consensus 166 gf~~~~~~~~ 175 (242)
T Consensus 159 ~i~I~~~~~l 168 (193)
T pfam07021 159 NLKVEDRAAL 168 (193)
T ss_pred CCEEEEEEEE
T ss_conf 9989999997