HHsearch alignment for GI: 254780582 and conserved domain: pfam09243
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=97.79 E-value=0.00026 Score=44.71 Aligned_cols=120 Identities=10% Similarity=-0.012 Sum_probs=69.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHH--H--HHHHCCCCEEEEEECHHHHHHHHHCC---CCC---EEE
Q ss_conf 8898999999999999750104897599965388111--3--55312387488730589998323116---862---365
Q gi|254780582|r 14 SFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFF--S--CFHGKVERTLAFMPAGQGATNWPDQY---FSS---TAL 83 (242)
Q Consensus 14 s~~G~~~~~~~~~~l~~~l~~~~g~~vLdiGcg~g~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~ 83 (242)
T Consensus 12 ~pa~Yaa~~~vl~Ei~~r~p~f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~~~ 91 (275)
T pfam09243 12 LPATYAAVRASLDELAERVPQFAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAWRA 91 (275)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCEEC
T ss_conf 45779999999999998679999875777277579999999988424768999748999999999998518434543111
Q ss_pred ECHHHCCCCCCCCCCHHHHHHHHHHC--CHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 33365677547202002202477522--99999999998469998899973387
Q gi|254780582|r 84 VSEGNLPLADSSVDCVLMVHYLEFAE--DPFLMLHEIWRVLTSGGRMIVVVPNK 135 (242)
Q Consensus 84 ~d~~~LPf~~~sfD~Vi~~h~LE~~~--dp~~~L~Ei~RvLkPgG~lii~~~n~ 135 (242)
T Consensus 92 ~~~~~~~~~~~~~DLVi~sy~L~El~~~~R~~~v~~LW~~~~--g~LVlVEpGt 143 (275)
T pfam09243 92 RDVIGAALDFEPADLVTISYVLDELTPASREKVIDNLWAKAA--QALVIVEPGT 143 (275)
T ss_pred CCCCCCCCCCCCCCEEEEECHHCCCCHHHHHHHHHHHHHHCC--CEEEEEECCC
T ss_conf 431011245898788996142207997899999999999539--9799991898