RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780582|ref|YP_003064995.1| Methyltransferase type 11
[Candidatus Liberibacter asiaticus str. psy62]
         (242 letters)



>gnl|CDD|149353 pfam08241, Methyltransf_11, Methyltransferase domain.  Members of
           this family are SAM dependent methyltransferases.
          Length = 95

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 17/43 (39%), Positives = 23/43 (53%)

Query: 88  NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIV 130
           +LP  D S D V+    L    DP   L EI RVL  GG++++
Sbjct: 53  DLPFPDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 95


>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional.
          Length = 241

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 24/47 (51%)

Query: 85  SEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVV 131
               LP  D S D V     L+  EDP   L EI RVL  GGR++V+
Sbjct: 77  DADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123


>gnl|CDD|162613 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
           methyltransferases.  Note that a number of
           non-orthologous genes which are members of pfam03737
           have been erroneously annotated as MenG
           methyltransferases.
          Length = 223

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 88  NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIV 130
            LP  D+S D V +   L    D    L E++RVL  GGR+++
Sbjct: 99  ALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVI 141


>gnl|CDD|183351 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed.
          Length = 272

 Score = 36.1 bits (84), Expect = 0.007
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 10/48 (20%)

Query: 88  NLPLADSSVD-----CVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIV 130
            LP+AD+SVD     CV+       + D   +  E +RVL  GGR  +
Sbjct: 139 ALPVADNSVDVIISNCVI-----NLSPDKERVFKEAFRVLKPGGRFAI 181


>gnl|CDD|178932 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis
           methyltransferase; Reviewed.
          Length = 239

 Score = 33.6 bits (78), Expect = 0.051
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 12/49 (24%)

Query: 88  NLPLADSSVDCVLM------VHYLEFAEDPFLMLHEIWRVLTSGGRMIV 130
            LP  D+S D V +      V       D    L E++RVL  GGR+++
Sbjct: 114 ALPFPDNSFDAVTIAFGLRNVP------DIDKALREMYRVLKPGGRLVI 156


>gnl|CDD|115661 pfam07021, MetW, Methionine biosynthesis protein MetW.  This family
           consists of several bacterial and one archaeal
           methionine biosynthesis MetW proteins. Biosynthesis of
           methionine from homoserine in Pseudomonas putida takes
           place in three steps. The first step is the acylation of
           homoserine to yield an acyl-L-homoserine. This reaction
           is catalysed by the products of the metXW genes and is
           equivalent to the first step in enterobacteria,
           gram-positive bacteria and fungi, except that in these
           microorganisms the reaction is catalysed by a single
           polypeptide (the product of the metA gene in Escherichia
           coli and the met5 gene product in Neurospora crassa). In
           Pseudomonas putida, as in gram-positive bacteria and
           certain fungi, the second and third steps are a direct
           sulfhydrylation that converts the O-acyl-L-homoserine
           into homocysteine and further methylation to yield
           methionine. The latter reaction can be mediated by
           either of the two methionine synthetases present in the
           cells.
          Length = 193

 Score = 33.6 bits (77), Expect = 0.053
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 92  ADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARME-------H 144
            D S D V++   L+   +P  +L E+ R+   G R IV  PN  G W R+         
Sbjct: 72  PDKSFDYVILSQTLQATRNPREVLDELLRI---GRRAIVSFPN-FGHW-RVRWSLLSRGR 126

Query: 145 TPFGSGQPYSWY 156
            P     PY+WY
Sbjct: 127 MPVTDLLPYTWY 138


>gnl|CDD|149354 pfam08242, Methyltransf_12, Methyltransferase domain.  Members of
           this family are SAM dependent methyltransferases.
          Length = 98

 Score = 32.0 bits (73), Expect = 0.13
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 91  LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGR 127
           L   S D V+  + L    DP  +L  + R+L  GG 
Sbjct: 61  LDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGV 97


>gnl|CDD|185563 PTZ00337, PTZ00337, surface protease GP63; Provisional.
          Length = 567

 Score = 29.9 bits (67), Expect = 0.58
 Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 11/36 (30%)

Query: 103 HYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM 138
           H L F  D FLMLH           MI  VPN RGM
Sbjct: 239 HALGFVRDQFLMLH-----------MISEVPNVRGM 263


>gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase.
          Length = 160

 Score = 29.7 bits (66), Expect = 0.77
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 88  NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135
           +LP  D   D V M + L    D    + E++RVL  G R+ ++  NK
Sbjct: 37  DLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNK 84


>gnl|CDD|173476 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small
           subunit; Provisional.
          Length = 330

 Score = 28.6 bits (64), Expect = 1.5
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 25/68 (36%)

Query: 100 LMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMI 159
           LM  Y+EF  D         R+L + G     VP             + S  P+ W  MI
Sbjct: 260 LMAQYIEFVAD---------RLLVALG-----VPKI-----------YNSKNPFDWMDMI 294

Query: 160 SLLREANF 167
           SL  + NF
Sbjct: 295 SLQGKTNF 302


>gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase.
          Length = 261

 Score = 28.7 bits (64), Expect = 1.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 88  NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135
           +LP  D   D + M + L    D    + E++RVL  G R+ ++  NK
Sbjct: 138 DLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNK 185


>gnl|CDD|178414 PLN02819, PLN02819, lysine-ketoglutarate reductase/saccharopine
           dehydrogenase.
          Length = 1042

 Score = 27.8 bits (62), Expect = 2.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)

Query: 37  GCRLLGLGYAIPFFSC 52
           G RLL LGY+ PF S 
Sbjct: 154 GQRLLSLGYSTPFLSL 169


>gnl|CDD|181600 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated.
          Length = 560

 Score = 27.7 bits (62), Expect = 2.8
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 23  AISKVLSTTWDDVTGCRLL---GLGYAIPFFSC 52
           A+ + ++  W  +TG  LL   GL    P  S 
Sbjct: 336 AVQQAVAERWVKLTGQYLLEGYGLTECSPLVSV 368


>gnl|CDD|115806 pfam07176, DUF1400, Alpha/beta hydrolase of unknown function
          (DUF1400).  This family contains a number of
          hypothetical proteins of unknown function that seem to
          be specific to cyanobacteria. Members of this family
          have an alpha/beta hydrolase fold.
          Length = 127

 Score = 27.7 bits (62), Expect = 3.0
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 1  MRVDIVELRQFYSSFLGKCTTDAISKVLSTTWD 33
          + ++ V L QF +S +GK     +S+++ T  D
Sbjct: 57 LPLNPVTLSQFLNSPIGKDILAQLSQIIHTPSD 89


>gnl|CDD|178110 PLN02492, PLN02492, ribonucleoside-diphosphate reductase.
          Length = 324

 Score = 26.2 bits (58), Expect = 7.1
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 25/68 (36%)

Query: 100 LMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMI 159
           LM  Y+EF  D         R+L + G            + ++    +    P+ W ++I
Sbjct: 249 LMSQYIEFVAD---------RLLVALG------------YEKV----YNVVNPFDWMELI 283

Query: 160 SLLREANF 167
           SL  + NF
Sbjct: 284 SLQGKTNF 291


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.324    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0660    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,033,822
Number of extensions: 250295
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 506
Number of HSP's successfully gapped: 20
Length of query: 242
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 151
Effective length of database: 4,028,145
Effective search space: 608249895
Effective search space used: 608249895
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.5 bits)