RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780582|ref|YP_003064995.1| Methyltransferase type 11 [Candidatus Liberibacter asiaticus str. psy62] (242 letters) >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 Score = 65.6 bits (159), Expect = 9e-12 Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149 P + + ++ ++ LE+ E+P L+EI RVL S G + + + Sbjct: 111 PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYG 170 Query: 150 GQP----YSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFA 205 ++ L++E F + + ++ ++K + +L + ++ F Sbjct: 171 KDVVCNTMMPWEFEQLVKEQGFKV-VDGIGVYKRGVNEKMLGQLSTDLQQSLT-----FL 224 Query: 206 GIYVIEARK 214 +++++ K Sbjct: 225 WVFMLKRHK 233 >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 Score = 58.4 bits (140), Expect = 1e-09 Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 22/223 (9%) Query: 11 FYSSFLGK--CTTDAISKVLSTTWDDVT-GCRLL----GLGYAIPFFSCFHGKVERTLAF 63 +Y F K + + + L R+L G G + + Sbjct: 13 YYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDIN 72 Query: 64 MPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEF--AEDPFLMLHEIWRV 121 + + S E L D +D V++ H++E E F +L + Sbjct: 73 EDMIKFCEGKFNVVKSDA---IEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSK 129 Query: 122 LTSGGRMIVVVPNKRGMWARME-HTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180 + +++ PN +++ + + +P + +L F Sbjct: 130 MKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFEECEE 189 Query: 181 THKKCILKLWSVFEKIGNIFGPGFAGI---------YVIEARK 214 K + +V E++ + + Y I A+K Sbjct: 190 LTKLAKIDSNTVSEEVIRVINENIEKLNRILFGPQDYAIIAKK 232 >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA; HET: SAH; 2.60A {Thermus thermophilus HB8} Length = 211 Score = 54.7 bits (130), Expect = 2e-08 Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 11/169 (6%) Query: 37 GCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSV 96 G LL +G ++ ++ A ++ LP S Sbjct: 37 GESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESF 96 Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM-------EHTPFGS 149 D VL+ LEF ED +L E RVL GG ++V V WA + P+ Sbjct: 97 DVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQ 156 Query: 150 GQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGN 198 + + + +LL ++F P + + GN Sbjct: 157 ARFLAREDLKALLGPPEA----EGEAVFLAPEAHPPYEEADLAGRRAGN 201 >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 Score = 52.0 bits (124), Expect = 1e-07 Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 14/117 (11%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK------------ 135 +LP DSS D + + LE + P L + +VL GG + V+ + Sbjct: 98 SLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKA 157 Query: 136 -RGMWARMEHTPFGSGQPYSWYQMISLLREANFT-LSITSRSLFFPPTHKKCILKLW 190 + + G Q+ LL+E+ F + + R ++ + + + Sbjct: 158 IEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPRMVYIDSSKPELVDGFI 214 >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3hca_A* 3hce_A* 2obf_A* 2onz_A* 2opb_A* 1hnn_A* 1n7i_A* 1n7j_A* Length = 289 Score = 49.9 bits (118), Expect = 5e-07 Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 11/121 (9%) Query: 85 SEGNLPLADSSVDCVLMVHYLEFA----EDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWA 140 G A D ++ LE L I +L GG ++++ + + Sbjct: 164 PLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL 223 Query: 141 RMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVF----EKI 196 E S ++ L + + + R+ P + + + VF +K+ Sbjct: 224 AGEARLTVVP--VSEEEVREALVRSGYKV-RDLRTYIMPAHLQTGVDDVKGVFFAWAQKV 280 Query: 197 G 197 G Sbjct: 281 G 281 >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 Score = 49.6 bits (117), Expect = 6e-07 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 6/86 (6%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM----- 142 D + M+ L + +D L +L + +M+++V + W ++ Sbjct: 128 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYG 187 Query: 143 EHTPFGSGQPYSW-YQMISLLREANF 167 P Y + +L Sbjct: 188 SRFPQDDLCQYITSDDLTQMLDNLGL 213 >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 Score = 48.4 bits (114), Expect = 1e-06 Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 5/82 (6%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF 147 +PL D++VD + M +P L E+ RV + ++ K + P Sbjct: 99 KIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE----ERDKGPP 154 Query: 148 GSGQPYSWYQMISLLREANFTL 169 + YS +++ +L +A + Sbjct: 155 PE-EVYSEWEVGLILEDAGIRV 175 >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 Score = 46.7 bits (110), Expect = 4e-06 Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 10/99 (10%) Query: 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149 + D+SVD +L + +D ++ E+ R+L GR+I++ K E+T G Sbjct: 70 EIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK-------ENTGIGP 122 Query: 150 GQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILK 188 + + +NF + + P H +LK Sbjct: 123 PLSIRMDEKDYMGWFSNFVV---EKRFNPTPYHFGLVLK 158 >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 Score = 46.4 bits (110), Expect = 6e-06 Identities = 10/88 (11%), Positives = 29/88 (32%), Gaps = 13/88 (14%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF 147 + + + + ++ + + + ++++ L GG I+ E + Sbjct: 87 DFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP-------EQLQY 139 Query: 148 GSGQP------YSWYQMISLLREANFTL 169 +G P + S L N+ + Sbjct: 140 NTGGPKDLDLLPKLETLQSELPSLNWLI 167 >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 Score = 44.2 bits (104), Expect = 3e-05 Identities = 9/92 (9%), Positives = 31/92 (33%), Gaps = 11/92 (11%) Query: 89 LPLADSSVDCVLMVHYLEFAEDP--FLMLHEIWRVLTSGGRMIVV---------VPNKRG 137 + D V++ L + + ++ ++ GG ++++ P Sbjct: 242 RNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSA 301 Query: 138 MWARMEHTPFGSGQPYSWYQMISLLREANFTL 169 ++ G+ + + ++R+A + Sbjct: 302 DFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV 333 >2p7i_A Hypothetical protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 Score = 43.8 bits (102), Expect = 4e-05 Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 27/145 (18%) Query: 97 DCVLMVHYLEFAEDPFLMLHEIW-RVLTSGGRMIVVVPNKRGMWARMEHT---------- 145 D +++ H LE +DP +L I L GGR+ +V PN + ++ Sbjct: 105 DNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAV 164 Query: 146 -----PFGSGQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSV-------- 192 G Y+ + A + +FF ++ Sbjct: 165 TEAEFAHGHRCTYALDTLERDASRAGLQV-TYRSGIFFKALANFQWDQILQTDILSKEYL 223 Query: 193 --FEKIGNIFGPGFAGIYVIEARKI 215 ++G + A I+++ + I Sbjct: 224 DGCYQLGQQYPDLCASIFLLCEKGI 248 >3ege_A Putative methyltransferase from antibiotic biosynthesis pathway; YP_324569.1, structural genomics; 2.40A {Anabaena variabilis atcc 29413} Length = 261 Score = 43.7 bits (102), Expect = 4e-05 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 12/137 (8%) Query: 37 GCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSV 96 G G G + + A P+ NL L D SV Sbjct: 42 GA---GTGG---YSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSV 95 Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK--RGMWARMEHTPFGSGQPYS 154 D V+ + + E+ R++ G +++ + + +W ++ PF Sbjct: 96 DGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLY-DYFPFLWEDALR 154 Query: 155 WY---QMISLLREANFT 168 + + I+LL+E Sbjct: 155 FLPLDEQINLLQENTKR 171 >1vlm_A SAM-dependent methyltransferase; possible histamine N-methyltransferase, structural genomics, JCSG, protein structure initiative, PSI; 2.20A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Length = 219 Score = 43.6 bits (101), Expect = 5e-05 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 15/123 (12%) Query: 98 CVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM------EHTPFGSGQ 151 LMV + F +DP L E +R+L GG +IV + ++ R + + + + Sbjct: 105 FALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNAR 164 Query: 152 PYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFAGIYVIE 211 +S +++ L+R+A F ++LF P+ I + G G VI Sbjct: 165 FFSTEELMDLMRKAGFEEFKVVQTLFKHPSELSEIEPVKE---------GYGEGAFVVIR 215 Query: 212 ARK 214 K Sbjct: 216 GTK 218 >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 Score = 43.3 bits (101), Expect = 5e-05 Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 9/133 (6%) Query: 7 ELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLG-----YAIPFFSCFHGKVERTL 61 ++ + + K+L D +L LG + I KV Sbjct: 19 QMPRSKEGLKAAGEWHELKKMLP----DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGID 74 Query: 62 AFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRV 121 A + ++ + + + VL L + + +++ Sbjct: 75 LSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYIN 134 Query: 122 LTSGGRMIVVVPN 134 L S G I V + Sbjct: 135 LKSSGSFIFSVEH 147 >2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 182 Score = 43.1 bits (101), Expect = 5e-05 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 9/103 (8%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFL-MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTP 146 +SS D +L +L EI R+L GG + + P +E Sbjct: 59 QSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP--------VETAV 110 Query: 147 FGSGQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKL 189 + + + ++ S L + + P + + + Sbjct: 111 DNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREH 153 >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 Score = 43.2 bits (101), Expect = 6e-05 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 7/52 (13%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMW 139 LP +D+S+D ++ ++ AE E+ RV+ GG +I P R + Sbjct: 141 RLPFSDTSMDAIIRIYAPCKAE-------ELARVVKPGGWVITATPGPRHLM 185 >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, nucleus, phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 Score = 42.9 bits (100), Expect = 6e-05 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 +PL D SVD + L + L E RVL GG + V + R Sbjct: 108 QVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSR 155 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 42.2 bits (99), Expect = 1e-04 Identities = 47/226 (20%), Positives = 69/226 (30%), Gaps = 101/226 (44%) Query: 35 VTGCRLLGLGYAIP--FFSCFHGKVERTLAFMPAG--QG---------ATNWPDQYFSS- 80 VT +LLG P S G G QG +W + +F S Sbjct: 251 VT-AKLLGFT---PGELRSYLKGA---------TGHSQGLVTAVAIAETDSW-ESFFVSV 296 Query: 81 ----TALVSEG----------NLP---LADSSVD-------CVLMVHYLEFAE-DPFL-- 113 T L G +LP L DS ++ +L + L + ++ Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDS-LENNEGVPSPMLSISNLTQEQVQDYVNK 355 Query: 114 ---MLHEIWRV---LTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREAN- 166 L +V L +G + +VV SG P S Y + LR+A Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVV-----------------SGPPQSLYGLNLTLRKAKA 398 Query: 167 ----------FT---LSITSRSLFFP---PTHKKCILKLWSVFEKI 196 F+ L ++R F P P H L + I Sbjct: 399 PSGLDQSRIPFSERKLKFSNR--FLPVASPFHSHL---LVPASDLI 439 Score = 32.2 bits (73), Expect = 0.095 Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 74/215 (34%) Query: 4 DIVE--LRQFYSSFLGKCTTDAISKVLSTTWDDVT--------------GCRLLGLGYAI 47 ++ L +F + +L D + ++ T + + Sbjct: 82 QVLNLCLTEFENCYL--EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139 Query: 48 P-----FFSCFHGKVERTLA-FMPAGQGATNWPDQYFS------ST--ALVSEGNLPLAD 93 F + G + +A F GQG T D YF T LV L Sbjct: 140 KSNSALFRAVGEGNA-QLVAIF--GGQGNT---DDYFEELRDLYQTYHVLVG----DLIK 189 Query: 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM----W-ARMEHTP-- 146 S + + E + +V T +G+ W +TP Sbjct: 190 FSAETL-----SELIRTT----LDAEKVFT------------QGLNILEWLENPSNTPDK 228 Query: 147 -FGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180 + P S +I +++ A++ +T++ L F P Sbjct: 229 DYLLSIPIS-CPLIGVIQLAHYV--VTAKLLGFTP 260 >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus HB8} PDB: 2yr0_A Length = 263 Score = 41.9 bits (97), Expect = 1e-04 Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 12/86 (13%) Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK------------RGMWARM 142 SV V++VH D +L E RVL GG ++ R A Sbjct: 104 SVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEE 163 Query: 143 EHTPFGSGQPYSWYQMISLLREANFT 168 ++ LR Sbjct: 164 GFPVERGLHAKRLKEVEEALRRLGLK 189 >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.30A {Bacillus cereus atcc 14579} PDB: 2gh1_A Length = 284 Score = 41.7 bits (97), Expect = 1e-04 Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 21/95 (22%) Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN-------------------K 135 D + +L P ML ++ + GG++I P+ + Sbjct: 89 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQ 148 Query: 136 RGMWARMEHTPFGS--GQPYSWYQMISLLREANFT 168 G+ ++ + ++ L E Sbjct: 149 LGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVK 183 >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 Score = 41.2 bits (96), Expect = 2e-04 Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 8/81 (9%) Query: 97 DCVLMVHYLEFA--EDPFLMLHEIWRVLTSGGRMIV---VVPNKRGMWAR---MEHTPFG 148 D L+ H L +D +L I + R++V ++ + + Sbjct: 270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLV 329 Query: 149 SGQPYSWYQMISLLREANFTL 169 G S + +LL ++ + Sbjct: 330 GGAERSESEFAALLEKSGLRV 350 >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 Score = 40.7 bits (94), Expect = 3e-04 Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 4/79 (5%) Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHT----PFGSG 150 D V A + + L GG M++ P R + A E + Sbjct: 103 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTS 162 Query: 151 QPYSWYQMISLLREANFTL 169 + ++ + + + Sbjct: 163 DFLTLPGLVGAFDDLGYDV 181 >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 Score = 40.3 bits (93), Expect = 4e-04 Identities = 22/185 (11%), Positives = 52/185 (28%), Gaps = 24/185 (12%) Query: 7 ELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERT-LAFMP 65 E+ Y L + VL + G G G V + Sbjct: 29 EVFAHYEDILEDVVNKSFGNVL-----EF-GV---GTGNLTNKLLLAGRTVYGIEPSREM 79 Query: 66 AGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSG 125 P ++ + +P + ++ H+L ++ + + + ++L G Sbjct: 80 RMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT-DDEKNVAIAKYSQLLNKG 138 Query: 126 GRMIVVVPNKRGM--------WARMEHTPFGSGQPYSWY-----QMISLLREANFTLSIT 172 G+++ A+ + + Y M ++ F ++ T Sbjct: 139 GKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198 Query: 173 SRSLF 177 + F Sbjct: 199 RLNHF 203 >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 Score = 40.4 bits (93), Expect = 4e-04 Identities = 13/73 (17%), Positives = 25/73 (34%) Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSW 155 ++YL+ D R+LT GG+++ V + M + + S Sbjct: 101 TILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSS 160 Query: 156 YQMISLLREANFT 168 Y + E + Sbjct: 161 YIWFADPGEEPLS 173 >2avn_A Ubiquinone/menaquinone biosynthesis methyltransferase-related protein; TM1389, structural genomics; HET: SAI; 2.35A {Thermotoga maritima MSB8} SCOP: c.66.1.41 Length = 260 Score = 40.0 bits (92), Expect = 4e-04 Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 2/110 (1%) Query: 37 GCRLLGLGYAIPFFS-CFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSS 95 CR+L LG +S + + P+ + ++ + +LP + Sbjct: 55 PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGA 114 Query: 96 VDCVLMVHY-LEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEH 144 + VL + L + E+ EI RVL G +I V N +M Sbjct: 115 FEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIE 164 >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 Score = 40.0 bits (93), Expect = 5e-04 Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 7/64 (10%) Query: 86 EGNLPLAD-SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEH 144 +G LP + ++ P ++ + + + V P Sbjct: 101 KGELPAGLGAPFGLIVS------RRGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERL 154 Query: 145 TPFG 148 G Sbjct: 155 AAVG 158 >1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 Score = 39.8 bits (92), Expect = 5e-04 Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 24/181 (13%) Query: 7 ELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLL----GLGYAIPFFSCFHGKVERTLA 62 E ++ + + + + ++ G G K++ + Sbjct: 159 EYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVF 218 Query: 63 FMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDP--FLMLHEIWR 120 P + + G++ + + D VL+ + L D +L + Sbjct: 219 DRPQVVENLSGSNNLT-----YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKE 273 Query: 121 VLTSGGRMIVVVPNKRGMWARMEHTPFG-------------SGQPYSWYQMISLLREANF 167 +T+ G+ V + + + +G+ + + L EA F Sbjct: 274 AVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF 333 Query: 168 T 168 Sbjct: 334 Q 334 >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 Score = 39.1 bits (90), Expect = 8e-04 Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 4/88 (4%) Query: 97 DCVLMVHYLEFAEDPFLM--LHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYS 154 +L + L L L + + GG +++ + + + P + + Sbjct: 104 AGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPM--YHPVATAYRWP 161 Query: 155 WYQMISLLREANFTLSITSRSLFFPPTH 182 ++ L A F ++ + FP + Sbjct: 162 LPELAQALETAGFQVTSSHWDPRFPHAY 189 >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; NP_988299.1, structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 Score = 39.1 bits (90), Expect = 0.001 Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 12/83 (14%) Query: 98 CVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR------------MEHT 145 ++ + F ED EI+R+L SGG+ + + Sbjct: 114 LIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEF 173 Query: 146 PFGSGQPYSWYQMISLLREANFT 168 + + + ++L E + Sbjct: 174 NRKNISQENVERFQNVLDEIGIS 196 >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* Length = 225 Score = 38.4 bits (88), Expect = 0.001 Identities = 13/111 (11%), Positives = 28/111 (25%), Gaps = 3/111 (2%) Query: 62 AFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRV 121 P+ G +N ++ +L E S+ + +L + + Sbjct: 69 IKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADL 128 Query: 122 LTSGGRMIVVVPNKRGM---WARMEHTPFGSGQPYSWYQMISLLREANFTL 169 V + P S + Q + L + F + Sbjct: 129 AKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRI 179 >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 Score = 38.4 bits (89), Expect = 0.001 Identities = 6/41 (14%), Positives = 16/41 (39%) Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKR 136 + +++YLE + + ++L GG ++ Sbjct: 118 IVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158 >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase- like protein, methyltransferase domain; 1.85A {Lactobacillus casei atcc 334} Length = 275 Score = 38.5 bits (88), Expect = 0.002 Identities = 8/102 (7%), Positives = 24/102 (23%), Gaps = 18/102 (17%) Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN-----------------KRG 137 D V++ H L + + + + V + + Sbjct: 122 HFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGL 181 Query: 138 MWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFP 179 ++A + + + + +T + P Sbjct: 182 LYAIAPSDVANIRTLITPDTLAQIAHDNTWTY-TAGTIVEDP 222 >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 Score = 38.1 bits (88), Expect = 0.002 Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 9/137 (6%) Query: 42 GLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLM 101 G G + H ++ L + V EG+ D ++ Sbjct: 194 GRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVL 253 Query: 102 VHYLEFAEDP--FLMLHEIWRVLTSGGRMIV---VVPNKRGMWAR----MEHTPFGSGQP 152 L D +L RV+ + GR++V VVP +GQ Sbjct: 254 KRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQE 313 Query: 153 YSWYQMISLLREANFTL 169 + ++ L A L Sbjct: 314 RTAAELEPLFTAAGLRL 330 >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 Score = 36.5 bits (83), Expect = 0.005 Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 18/88 (20%) Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN---------KRGMWARMEHTP 146 + + + +D +L + +L GG +++ + + G Sbjct: 120 ICANFALLH----QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGF 175 Query: 147 FGSGQPYSWY-----QMISLLREANFTL 169 G QP WY ++ L A L Sbjct: 176 AGDWQPMPWYFRTLASWLNALDMAGLRL 203 >2i6g_A Putative methyltransferase; 16420133, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2} SCOP: c.66.1.44 Length = 199 Score = 36.3 bits (83), Expect = 0.006 Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF 147 + +++ +LE P ++ + R GG ++V + PF Sbjct: 100 ILSTVVMMFLEAQTIP-GLIANMQRCTXPGGYNLIVAAMDTPDFPCTVGFPF 150 >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 Score = 36.0 bits (82), Expect = 0.008 Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 7/79 (8%) Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK-------RGMWARMEHTPFGS 149 D + + D + E+ RVL GR ++V + Sbjct: 89 DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSH 148 Query: 150 GQPYSWYQMISLLREANFT 168 + S + ++ Sbjct: 149 VRESSLSEWQAMFSANQLA 167 >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 Length = 541 Score = 35.7 bits (81), Expect = 0.009 Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 12/145 (8%) Query: 87 GNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTP 146 N P ++ + + + I L GGR V + Sbjct: 267 TNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV-------VVPDNVLFE 319 Query: 147 FGSGQPYSWYQMISLLREANFTLSITSRS-LFFPPTHKKCILKLWSVFEKIGNIFGPGFA 205 G G L+ + + + + +F+ K +L N Sbjct: 320 GGKGTDIRRD----LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTD 375 Query: 206 GIYVIEARKILYQGLPITESKKKHI 230 ++V + R + T +H+ Sbjct: 376 DVWVYDLRTNMPSFGKRTPFTDEHL 400 >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in europe; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 Score = 35.6 bits (81), Expect = 0.011 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 11/88 (12%) Query: 93 DSSVDCVLMVHYLEFA--EDPFLMLHEIWRVLTSGGRMIVV---------VPNKRGMWAR 141 + D VL+ L ED +L R L GGR++V+ Sbjct: 246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLD 305 Query: 142 MEHTPFGSGQPYSWYQMISLLREANFTL 169 + F G+ + +++ L A L Sbjct: 306 LRMLTFMGGRVRTRDEVVDLAGSAGLAL 333 >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltransferase, structural genomics, PSI-2, protein structure initiative; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 Score = 35.0 bits (79), Expect = 0.015 Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 6/77 (7%) Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK------RGMWARMEHTPFGSG 150 D + ++ D +L ++ L SGG + V +P+ M + P+ Sbjct: 97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDA 156 Query: 151 QPYSWYQMISLLREANF 167 + L +++ Sbjct: 157 FSGGGLRRKPLPPPSDY 173 >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 Score = 34.7 bits (78), Expect = 0.017 Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMW-----ARMEHTPFGSG 150 + V + L I R L + GR ++ RG E Sbjct: 111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELE 170 Query: 151 QPYSWYQMISLLREANFTLSITSR 174 + + + ++ + F +++ ++ Sbjct: 171 NAFESWDLKPFVQGSEFLVAVFTK 194 >3fzg_A 16S rRNA methylase; methyltransferase, plasmid; HET: SAM; 2.00A {Escherichia coli} Length = 200 Score = 34.8 bits (79), Expect = 0.019 Identities = 4/58 (6%), Positives = 17/58 (29%) Query: 84 VSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR 141 + + D V ++ L + + + + ++ + +I + Sbjct: 104 FLNKESDVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEK 161 >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, S-adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 Score = 34.6 bits (78), Expect = 0.020 Identities = 18/163 (11%), Positives = 42/163 (25%), Gaps = 14/163 (8%) Query: 16 LGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPD 75 L + D + K++ G + P + A + A Sbjct: 183 LEEAKLDGVKKMI--DVGGGIGDISAAMLKHFPELDSTILNLPG--AIDLVNENAAEKGV 238 Query: 76 QYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIV---VV 132 V ++ + Y + +M + + + SGGR+++ V+ Sbjct: 239 ADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298 Query: 133 PNKRG-------MWARMEHTPFGSGQPYSWYQMISLLREANFT 168 + + PF + +L + Sbjct: 299 DDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYK 341 >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317 Score = 34.6 bits (79), Expect = 0.021 Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 6/55 (10%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM 142 S D + + ++ + + L GGR+IV + K Sbjct: 137 YGVPEFSPYDVIFVTVGVDE------VPETWFTQLKEGGRVIVPINLKLSRRQPA 185 >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 Score = 34.6 bits (78), Expect = 0.022 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 8/64 (12%) Query: 114 MLHEIWRVLTSGGRMIVV--------VPNKRGMWARMEHTPFGSGQPYSWYQMISLLREA 165 +L L GGR+++ N++ + F G + + L A Sbjct: 270 ILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASA 329 Query: 166 NFTL 169 + Sbjct: 330 GLVV 333 >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 Score = 34.5 bits (78), Expect = 0.023 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 4/65 (6%) Query: 109 EDPFLMLHEIWRVLTSGGRMIVVVP----NKRGMWARMEHTPFGSGQPYSWYQMISLLRE 164 +L SGG ++V+ G + + G+ S ++ L + Sbjct: 251 LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQ 310 Query: 165 ANFTL 169 A + Sbjct: 311 AGLAV 315 >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 Score = 34.4 bits (78), Expect = 0.026 Identities = 25/189 (13%), Positives = 44/189 (23%), Gaps = 24/189 (12%) Query: 12 YSSFLGKCTTDAISKVLSTTWDDVTGCRLL----GLGYAIPFFSCFHGKVERTLAFMPAG 67 Y + A L +L G GY S +V Sbjct: 22 YDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMI 81 Query: 68 QGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFL--MLHEIWRVLTSG 125 A D D V H+L D + + G Sbjct: 82 AEAGRHGLDNVEFRQQDLFD--WTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG 139 Query: 126 GRMIVV--VPNKRGMWARMEHTP-------FGSGQPYSWY-------QMISLLREANFTL 169 G + V ++R + + + P G+ + ++ L ++ Sbjct: 140 GVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199 Query: 170 SITSRSLFF 178 S+ F Sbjct: 200 SVDEVHPGF 208 >1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.31 Length = 416 Score = 33.6 bits (76), Expect = 0.040 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 88 NLPLADSSVDC-VLMVHYLEFAEDPFLMLHEIWRVLTSGGRMI 129 + + + V+ V+ F + L E + + GGR++ Sbjct: 225 SEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 267 >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 Length = 433 Score = 33.2 bits (75), Expect = 0.050 Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 22/117 (18%) Query: 88 NLPLADSSVDC-VLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIV---VVPNKRGMWARME 143 N +A+ C V++V+ F ED + +I + G ++I + + Sbjct: 314 NNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQINFYNV 373 Query: 144 HTPFG----------------SGQPYSWYQ--MISLLREANFTLSITSRSLFFPPTH 182 F + +Y ++ + E+ F+ + R P Sbjct: 374 ENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRGTPVK 430 >1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein, structural genomics, JCSG, protein structure initiative, PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP: c.66.1.41 Length = 260 Score = 33.4 bits (75), Expect = 0.052 Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 13/143 (9%) Query: 37 GCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLAD 93 G G+ F+ F KV + T + + +P D Sbjct: 45 AT---GGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 Query: 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR-------MEHTP 146 V +P + E +RVL GG++++V + A + Sbjct: 102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERD 161 Query: 147 FGSGQPYSWYQMISLLREANFTL 169 + + + + +L EA F L Sbjct: 162 YSHHRAWKKSDWLKMLEEAGFEL 184 >3dmg_A Probable ribosomal RNA small subunit methyltransferase; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* Length = 381 Score = 33.3 bits (75), Expect = 0.052 Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 19/126 (15%) Query: 33 DDVTGCRLLGLGYAIPFFSCFHGK----------VERTLAFMPAGQGATNWPDQYFSSTA 82 + V G ++L LG + + ++ + G A Q S Sbjct: 230 EGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDV 289 Query: 83 LVSEGNLPLADSSVDCVLMVHYLEFA-----EDPFLMLHEIWRVLTSGGRMIVVVPNKRG 137 ++ D ++ + ++ L GG +V Sbjct: 290 D----EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLK 345 Query: 138 MWARME 143 +E Sbjct: 346 YEPLLE 351 >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 Length = 359 Score = 33.0 bits (75), Expect = 0.059 Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 86 EGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHT 145 +GN+ +A++ VL +Y +F ED L L + + GGRM++ + R Sbjct: 163 KGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL------GRRSED 216 Query: 146 PFGSGQPYSWYQMISLLRE 164 + W + L + Sbjct: 217 RASTECCLIWQLLAMALNQ 235 >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27} Length = 258 Score = 33.1 bits (75), Expect = 0.060 Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 34/129 (26%) Query: 91 LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSG 150 L ++ ++ +P+ +L + L ++ +PN + Sbjct: 157 LEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQV------------ 204 Query: 151 QPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFAGI--- 207 +++ F L + + W V + P F + Sbjct: 205 -----LELVRAAEAHPFRLERV----------LEVGWREWEV---RLPVAHPRFQQVGHT 246 Query: 208 -YVIEARKI 215 +++ R+ Sbjct: 247 AFLVALRRW 255 >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research, nysgxrc; 2.33A {Bacteroides vulgatus atcc 8482} Length = 363 Score = 32.9 bits (74), Expect = 0.064 Identities = 19/205 (9%), Positives = 58/205 (28%), Gaps = 23/205 (11%) Query: 7 ELRQFYSSFLGKCTTDAISKVLS-------TTWDDV---TGCRLLGLGYAIPFFSCFHGK 56 ++++ + F + + K L D+ TG Sbjct: 151 QVQKSWFGFDHFYSDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVD 210 Query: 57 VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAE-DPFLML 115 + + L M + ++ A + + ++P + F+E + +L Sbjct: 211 LPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISIL 270 Query: 116 HEIWRVLTSGGRMIVV------------VPNKRGMWARMEHTPFGSGQPYSWYQMISLLR 163 + + + ++ ++ + G+ + + +I + Sbjct: 271 TRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIE 330 Query: 164 EANFTLSITSRSLFFPPTHKKCILK 188 A + ++ + +C LK Sbjct: 331 NAGLEVEEIQDNIGLGHSILQCRLK 355 >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 Score = 32.4 bits (73), Expect = 0.091 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 10/70 (14%) Query: 97 DCVLMVHYLEFAEDPFL--MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYS 154 D ++ F + ++ + GG ++V M P+S Sbjct: 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA--------MSTDDVPCPLPFS 237 Query: 155 WYQMISLLRE 164 + + L+E Sbjct: 238 FTFAENELKE 247 >2imh_A Hypothetical protein UNP Q5LQD5_silpo; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE; 1.57A {Silicibacter pomeroyi} SCOP: d.153.1.7 Length = 231 Score = 32.2 bits (73), Expect = 0.11 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 8/64 (12%) Query: 58 ERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHE 117 R LA + A +GA + S+ LV + P +D ++P L + Sbjct: 144 RRLLAALIAAEGAGSDFRGLLSAAMLVLHPDRPPVTLRID--------YHPDNPIGALEQ 195 Query: 118 IWRV 121 +++ Sbjct: 196 LYQK 199 >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 Score = 32.0 bits (72), Expect = 0.13 Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 21/168 (12%) Query: 37 GCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGAT-------NWPDQYFSSTALVSEGNL 89 GC G G+ + + V A A F + + Sbjct: 74 GC---GGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT 130 Query: 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149 L D D V ++ +L G +I ++ + + P+ Sbjct: 131 ELFDLIFDYVFFCAIEPE--MRPAWAKSMYELLKPDGELITLM---YPITDHVGGPPYK- 184 Query: 150 GQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIG 197 +L F + PT K + ++KI Sbjct: 185 ---VDVSTFEEVLVPIGFKAVSVEENPHAIPTRKG--KEKLGRWKKIN 227 >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas aeruginosa PAO1} Length = 334 Score = 31.8 bits (71), Expect = 0.14 Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 9/82 (10%) Query: 97 DCVLMVHYLEFAEDPFLM--LHEIWRVLTSGGRMIV---VVPNKRGMWAR----MEHTPF 147 D L+ + ++ + L + GR++V + + Sbjct: 235 DIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMA 294 Query: 148 GSGQPYSWYQMISLLREANFTL 169 +G+ + +++ LL F + Sbjct: 295 CAGRHRTTEEVVDLLGRGGFAV 316 >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A Length = 267 Score = 31.8 bits (71), Expect = 0.14 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 4/83 (4%) Query: 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF-- 147 P + +D + + L+E + L GG + V + E F Sbjct: 109 PFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWM 167 Query: 148 -GSGQPYSWYQMISLLREANFTL 169 + + ++ + +A + Sbjct: 168 DAYPEIDTIPNQVAKIHKAGYLP 190 >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics, joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 Score = 31.7 bits (70), Expect = 0.14 Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 2/119 (1%) Query: 61 LAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWR 120 +A ++ ++ + + D+++ H++ E L+ + Sbjct: 93 IAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIP-VEKRELLGQSLRI 151 Query: 121 VLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFP 179 +L G M ++ G GQ ++ + L+FP Sbjct: 152 LLGKQGAMYLIELG-TGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYFP 209 >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43 Length = 252 Score = 31.6 bits (70), Expect = 0.15 Identities = 7/37 (18%), Positives = 10/37 (27%) Query: 98 CVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 ED + ++ L GG I P Sbjct: 111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147 >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine; HET: SAH; 2.7A {Vaccinia virus} Length = 302 Score = 31.3 bits (70), Expect = 0.17 Identities = 9/80 (11%), Positives = 27/80 (33%), Gaps = 3/80 (3%) Query: 72 NWPDQYFSSTALVSEGNLPLADSSVDCVLM---VHYLEFAEDPFLMLHEIWRVLTSGGRM 128 ++ + S VS + + +HY +++ + + SGG++ Sbjct: 106 DYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKV 165 Query: 129 IVVVPNKRGMWARMEHTPFG 148 ++ + + + F Sbjct: 166 LITTMDGDKLSKLTDKKTFI 185 >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural genomics consortium, SGC; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Length = 336 Score = 30.9 bits (69), Expect = 0.27 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 5/65 (7%) Query: 70 ATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMI 129 WPD +S + + D V + +P + L + L GG Sbjct: 162 VEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCA 216 Query: 130 VVVPN 134 V V N Sbjct: 217 VYVVN 221 >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics, protein structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 Score = 30.7 bits (68), Expect = 0.30 Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 9/56 (16%) Query: 86 EGNLPLADSSVDCVLM---------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132 + D V V+ E L + +L +GG + VV+ Sbjct: 84 QNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139 >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics, JCSG, PSI, protein structure initiative; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277 Score = 30.7 bits (69), Expect = 0.32 Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 34/119 (28%) Query: 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMIS 160 + DP+ + + W L GGR V P + + Sbjct: 182 VDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT-------TNQV----------QETLK 224 Query: 161 LLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFAGI----YVIEARKI 215 L+E F + + + + + P + Y+I A K+ Sbjct: 225 KLQELPFIR----------IEVWESLFRPYKP---VPERLRPVDRMVAHTAYMIFATKV 270 >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 Score = 30.7 bits (68), Expect = 0.33 Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 4/68 (5%) Query: 80 STALVSEGNLPLADSSVDCVL----MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135 S+ + D + E E +ML L+ GG I PN Sbjct: 99 SSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158 Query: 136 RGMWARME 143 + R+E Sbjct: 159 FELIRRLE 166 >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 Score = 29.9 bits (66), Expect = 0.51 Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 12/104 (11%) Query: 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSG-----QPYSW 155 + +E + I R L GG I+ VP++ + R + + Sbjct: 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKME 202 Query: 156 YQMISLLREANFTL--SITSRSLFFPPTHKKCILKLWSVFEKIG 197 + +RE FTL S+ + +F ++ F+++G Sbjct: 203 DVPMESVREYRFTLLDSVNNCIEYFVDFT-----RMVDGFKRLG 241 >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 Score = 29.9 bits (67), Expect = 0.55 Identities = 6/34 (17%), Positives = 12/34 (35%) Query: 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 + H + P ++ + L GG + P Sbjct: 163 VDHVILDLPQPERVVEHAAKALKPGGFFVAYTPC 196 >2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc 73102} Length = 335 Score = 29.6 bits (65), Expect = 0.62 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 9/82 (10%) Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVV---------VPNKRGMWARMEHTP 146 + + + +L +I L G++IV P ++ + Sbjct: 235 LVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLAT 294 Query: 147 FGSGQPYSWYQMISLLREANFT 168 +G Y++ + S+ A F+ Sbjct: 295 TPNGDAYTFAEYESMFSNAGFS 316 >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 Score = 29.6 bits (65), Expect = 0.73 Identities = 9/98 (9%), Positives = 23/98 (23%), Gaps = 14/98 (14%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFL--MLHEIWRVLTSGGRMIVVVPN----------K 135 D ++ +E + L ++ +IV PN Sbjct: 95 YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI-VIVTTPNIEYNVKFANLP 153 Query: 136 RGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITS 173 G +H + + + + + + Sbjct: 154 AGKLRHKDHRFEWTRSQFQNW-ANKITERFAYNVQFQP 190 >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 Score = 29.3 bits (65), Expect = 0.76 Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 2/50 (4%) Query: 96 VDCVLMVHYLEFAEDPFL--MLHEIWRVLTSGGRMIVVVPNKRGMWARME 143 + H ++ R L SGG + +V ++ Sbjct: 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLD 314 >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, PSI, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 Score = 29.1 bits (65), Expect = 0.83 Identities = 8/25 (32%), Positives = 15/25 (60%) Query: 110 DPFLMLHEIWRVLTSGGRMIVVVPN 134 P+ +L + R+L +GG ++V V Sbjct: 181 APWEVLDAVSRLLVAGGVLMVYVAT 205 >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291; HET: SAH; 1.30A {Homo sapiens} Length = 215 Score = 29.3 bits (64), Expect = 0.85 Identities = 30/153 (19%), Positives = 43/153 (28%), Gaps = 31/153 (20%) Query: 37 GCRLLGLGYAIPFFS------CFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP 90 R+L LG S F + + + + L Sbjct: 43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD 102 Query: 91 LADSSVDCVLMVHYL---------------EFAEDPFLMLHEIWRVLTSGGRMIVV---V 132 +S D VL L E +L E+ RVL GGR I + Sbjct: 103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162 Query: 133 PNKRGMWAR-------MEHTPFGSGQPYSWYQM 158 P+ R + H +GSG + Y M Sbjct: 163 PHFRTRHYAQAYYGWSLRHATYGSGFHFHLYLM 195 >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics, hypothetical protein, structure 2 function project, S2F; HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP: c.66.1.14 Length = 244 Score = 29.0 bits (64), Expect = 1.0 Identities = 10/105 (9%), Positives = 29/105 (27%), Gaps = 24/105 (22%) Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMW-------- 139 ++ + ++S+ + ED +L +I+ L G +++ + Sbjct: 122 HVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLID 181 Query: 140 ----------------ARMEHTPFGSGQPYSWYQMISLLREANFT 168 ++ + S L+ F+ Sbjct: 182 LHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFS 226 >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} Length = 257 Score = 28.5 bits (62), Expect = 1.4 Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 4/78 (5%) Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF---GSGQ 151 +D + + ++E + L GG + V + E F + Sbjct: 114 ELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPE 172 Query: 152 PYSWYQMISLLREANFTL 169 I + A +T Sbjct: 173 ISVIPTCIDKMERAGYTP 190 >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm 1728} SCOP: c.66.1.13 Length = 275 Score = 27.7 bits (61), Expect = 2.7 Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%) Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134 D + + DP+ + +I ++ G +PN Sbjct: 177 DQMYDAVIADIP-DPWNHVQKIASMMKPGSVATFYLPN 213 >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 Score = 27.5 bits (60), Expect = 2.8 Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 21/94 (22%) Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR-------------- 141 + + Y + W+ L GG ++ + Sbjct: 191 LTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDL 250 Query: 142 -MEHTPFGSGQPYSWY------QMISLLREANFT 168 ++ F W Q + L EA FT Sbjct: 251 QLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFT 284 >1or8_A Protein arginine N-methyltransferase 1; protein arginine methylation, adoMet-dependent methylation, transferase; HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB: 1orh_A* 1ori_A* Length = 340 Score = 27.4 bits (60), Expect = 2.9 Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%) Query: 88 NLPLADSSVDCVLMV---HYLEFAEDPFLMLHEIWRVLTSGGRMI 129 + L VD ++ + L + +LH + L G + Sbjct: 117 EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 161 >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* Length = 384 Score = 27.6 bits (61), Expect = 2.9 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 8/88 (9%) Query: 51 SCFHGKV--ERTLAFMPAGQGATNWPDQYFSS-----TALVSEGNLPLADSSVDCVLMVH 103 F+ ++ E ++ F+ + +W Q S V++G + + +S + + Sbjct: 138 GSFYSRLFPEESMHFLHSC-YCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAY 196 Query: 104 YLEFAEDPFLMLHEIWRVLTSGGRMIVV 131 +F +D L L S GRM++ Sbjct: 197 LDQFTKDFTTFLRIHSEELISRGRMLLT 224 >1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A* 1wk8_A* 1udz_A 1ue0_A Length = 186 Score = 26.8 bits (58), Expect = 4.4 Identities = 9/35 (25%), Positives = 15/35 (42%) Query: 181 THKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKI 215 T + L L ++ G + F G+Y EA + Sbjct: 132 TARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRA 166 >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein, transferase; HET: TNA MTA; 1.66A {Methanothermobacterthermautotrophicus} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* Length = 298 Score = 26.6 bits (58), Expect = 4.6 Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 3/63 (4%) Query: 72 NWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVV 131 +++ + D +++ AE + I R + + R+I Sbjct: 165 VIEGLGVDGVNVITGDETVIDGLEFDVLMVAA---LAEPKRRVFRNIHRYVDTETRIIYR 221 Query: 132 VPN 134 Sbjct: 222 TYT 224 >3es5_A Putative capsid protein; partitivirus, RNA virus, double stranded RNA virus, dsRNA virus, "T=2" capsid, icosahedral virus; 3.30A {Penicillium stoloniferum virus F} Length = 420 Score = 26.7 bits (58), Expect = 5.2 Identities = 13/45 (28%), Positives = 20/45 (44%) Query: 53 FHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVD 97 F +VE P G T + Q SST + PL+D+ ++ Sbjct: 333 FKWRVESIFKVGPPPAGTTGYGAQTVSSTGNTARWQFPLSDADIN 377 >1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia coli} SCOP: c.66.1.5 PDB: 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 292 Score = 26.3 bits (56), Expect = 6.0 Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 7/72 (9%) Query: 82 ALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLH-------EIWRVLTSGGRMIVVVPN 134 L + ++P D + + + D I ++ GG +++ N Sbjct: 117 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 Query: 135 KRGMWARMEHTP 146 + + P Sbjct: 177 YDYILSTGCAPP 188 >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, alternative splicing; 2.55A {Rattus norvegicus} Length = 480 Score = 26.2 bits (57), Expect = 7.7 Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%) Query: 94 SSVDCVL--MVHYLEFAEDPFLMLHEIWRVLTSGGRMI 129 VD ++ + Y+ F E + L G M Sbjct: 223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260 >1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related protein, heteronuclear structure; NMR {Prunus avium} SCOP: d.129.3.1 PDB: 1h2o_A Length = 159 Score = 25.9 bits (57), Expect = 8.2 Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 16/68 (23%) Query: 147 FGSGQPYSWY-QMISLLREANFTL---------------SITSRSLFFPPTHKKCILKLW 190 FG G Y + I + + N++ I+ + I+K Sbjct: 58 FGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKST 117 Query: 191 SVFEKIGN 198 S + GN Sbjct: 118 SHYHTKGN 125 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.324 0.139 0.442 Gapped Lambda K H 0.267 0.0443 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,174,728 Number of extensions: 96966 Number of successful extensions: 406 Number of sequences better than 10.0: 1 Number of HSP's gapped: 385 Number of HSP's successfully gapped: 92 Length of query: 242 Length of database: 5,693,230 Length adjustment: 90 Effective length of query: 152 Effective length of database: 3,511,270 Effective search space: 533713040 Effective search space used: 533713040 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 55 (25.7 bits)