RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780582|ref|YP_003064995.1| Methyltransferase type 11
[Candidatus Liberibacter asiaticus str. psy62]
(242 letters)
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 65.6 bits (159), Expect = 9e-12
Identities = 20/129 (15%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149
P + + ++ ++ LE+ E+P L+EI RVL S G + + +
Sbjct: 111 PFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLYG 170
Query: 150 GQP----YSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFA 205
++ L++E F + + ++ ++K + +L + ++ F
Sbjct: 171 KDVVCNTMMPWEFEQLVKEQGFKV-VDGIGVYKRGVNEKMLGQLSTDLQQSLT-----FL 224
Query: 206 GIYVIEARK 214
+++++ K
Sbjct: 225 WVFMLKRHK 233
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein
structure initiative; 2.46A {Archaeoglobus fulgidus}
Length = 240
Score = 58.4 bits (140), Expect = 1e-09
Identities = 31/223 (13%), Positives = 66/223 (29%), Gaps = 22/223 (9%)
Query: 11 FYSSFLGK--CTTDAISKVLSTTWDDVT-GCRLL----GLGYAIPFFSCFHGKVERTLAF 63
+Y F K + + + L R+L G G + +
Sbjct: 13 YYFLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDIN 72
Query: 64 MPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEF--AEDPFLMLHEIWRV 121
+ + S E L D +D V++ H++E E F +L +
Sbjct: 73 EDMIKFCEGKFNVVKSDA---IEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSK 129
Query: 122 LTSGGRMIVVVPNKRGMWARME-HTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180
+ +++ PN +++ + + +P + +L F
Sbjct: 130 MKYSSYIVIESPNPTSLYSLINFYIDPTHKKPVHPETLKFILEYLGFRDVKIEFFEECEE 189
Query: 181 THKKCILKLWSVFEKIGNIFGPGFAGI---------YVIEARK 214
K + +V E++ + + Y I A+K
Sbjct: 190 LTKLAKIDSNTVSEEVIRVINENIEKLNRILFGPQDYAIIAKK 232
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural
genomics, NPPSFA; HET: SAH; 2.60A {Thermus thermophilus
HB8}
Length = 211
Score = 54.7 bits (130), Expect = 2e-08
Identities = 34/169 (20%), Positives = 55/169 (32%), Gaps = 11/169 (6%)
Query: 37 GCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSV 96
G LL +G ++ ++ A ++ LP S
Sbjct: 37 GESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESF 96
Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM-------EHTPFGS 149
D VL+ LEF ED +L E RVL GG ++V V WA + P+
Sbjct: 97 DVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRRLGEKGVLPWAQ 156
Query: 150 GQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGN 198
+ + + +LL ++F P + + GN
Sbjct: 157 ARFLAREDLKALLGPPEA----EGEAVFLAPEAHPPYEEADLAGRRAGN 201
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 52.0 bits (124), Expect = 1e-07
Identities = 22/117 (18%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK------------ 135
+LP DSS D + + LE + P L + +VL GG + V+ +
Sbjct: 98 SLPFEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKA 157
Query: 136 -RGMWARMEHTPFGSGQPYSWYQMISLLREANFT-LSITSRSLFFPPTHKKCILKLW 190
+ + G Q+ LL+E+ F + + R ++ + + +
Sbjct: 158 IEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVEPRMVYIDSSKPELVDGFI 214
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3hca_A* 3hce_A* 2obf_A* 2onz_A* 2opb_A*
1hnn_A* 1n7i_A* 1n7j_A*
Length = 289
Score = 49.9 bits (118), Expect = 5e-07
Identities = 19/121 (15%), Positives = 39/121 (32%), Gaps = 11/121 (9%)
Query: 85 SEGNLPLADSSVDCVLMVHYLEFA----EDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWA 140
G A D ++ LE L I +L GG ++++ + +
Sbjct: 164 PLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYL 223
Query: 141 RMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVF----EKI 196
E S ++ L + + + R+ P + + + VF +K+
Sbjct: 224 AGEARLTVVP--VSEEEVREALVRSGYKV-RDLRTYIMPAHLQTGVDDVKGVFFAWAQKV 280
Query: 197 G 197
G
Sbjct: 281 G 281
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 49.6 bits (117), Expect = 6e-07
Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 6/86 (6%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM----- 142
D + M+ L + +D L +L + +M+++V + W ++
Sbjct: 128 LEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYG 187
Query: 143 EHTPFGSGQPYSW-YQMISLLREANF 167
P Y + +L
Sbjct: 188 SRFPQDDLCQYITSDDLTQMLDNLGL 213
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 48.4 bits (114), Expect = 1e-06
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF 147
+PL D++VD + M +P L E+ RV + ++ K + P
Sbjct: 99 KIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKE----ERDKGPP 154
Query: 148 GSGQPYSWYQMISLLREANFTL 169
+ YS +++ +L +A +
Sbjct: 155 PE-EVYSEWEVGLILEDAGIRV 175
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 46.7 bits (110), Expect = 4e-06
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 10/99 (10%)
Query: 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149
+ D+SVD +L + +D ++ E+ R+L GR+I++ K E+T G
Sbjct: 70 EIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK-------ENTGIGP 122
Query: 150 GQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILK 188
+ + +NF + + P H +LK
Sbjct: 123 PLSIRMDEKDYMGWFSNFVV---EKRFNPTPYHFGLVLK 158
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 46.4 bits (110), Expect = 6e-06
Identities = 10/88 (11%), Positives = 29/88 (32%), Gaps = 13/88 (14%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF 147
+ + + + ++ + + + ++++ L GG I+ E +
Sbjct: 87 DFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAP-------EQLQY 139
Query: 148 GSGQP------YSWYQMISLLREANFTL 169
+G P + S L N+ +
Sbjct: 140 NTGGPKDLDLLPKLETLQSELPSLNWLI 167
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 44.2 bits (104), Expect = 3e-05
Identities = 9/92 (9%), Positives = 31/92 (33%), Gaps = 11/92 (11%)
Query: 89 LPLADSSVDCVLMVHYLEFAEDP--FLMLHEIWRVLTSGGRMIVV---------VPNKRG 137
+ D V++ L + + ++ ++ GG ++++ P
Sbjct: 242 RNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPALSA 301
Query: 138 MWARMEHTPFGSGQPYSWYQMISLLREANFTL 169
++ G+ + + ++R+A +
Sbjct: 302 DFSLHMMVNTNHGELHPTPWIAGVVRDAGLAV 333
>2p7i_A Hypothetical protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; 1.74A {Pectobacterium atrosepticum SCRI1043}
SCOP: c.66.1.41 PDB: 2p7h_A
Length = 250
Score = 43.8 bits (102), Expect = 4e-05
Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 27/145 (18%)
Query: 97 DCVLMVHYLEFAEDPFLMLHEIW-RVLTSGGRMIVVVPNKRGMWARMEHT---------- 145
D +++ H LE +DP +L I L GGR+ +V PN + ++
Sbjct: 105 DNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAV 164
Query: 146 -----PFGSGQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSV-------- 192
G Y+ + A + +FF ++
Sbjct: 165 TEAEFAHGHRCTYALDTLERDASRAGLQV-TYRSGIFFKALANFQWDQILQTDILSKEYL 223
Query: 193 --FEKIGNIFGPGFAGIYVIEARKI 215
++G + A I+++ + I
Sbjct: 224 DGCYQLGQQYPDLCASIFLLCEKGI 248
>3ege_A Putative methyltransferase from antibiotic biosynthesis pathway;
YP_324569.1, structural genomics; 2.40A {Anabaena
variabilis atcc 29413}
Length = 261
Score = 43.7 bits (102), Expect = 4e-05
Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 12/137 (8%)
Query: 37 GCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSV 96
G G G + + A P+ NL L D SV
Sbjct: 42 GA---GTGG---YSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSV 95
Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK--RGMWARMEHTPFGSGQPYS 154
D V+ + + E+ R++ G +++ + + +W ++ PF
Sbjct: 96 DGVISILAIHHFSHLEKSFQEMQRIIRDGTIVLLTFDIRLAQRIWLY-DYFPFLWEDALR 154
Query: 155 WY---QMISLLREANFT 168
+ + I+LL+E
Sbjct: 155 FLPLDEQINLLQENTKR 171
>1vlm_A SAM-dependent methyltransferase; possible histamine
N-methyltransferase, structural genomics, JCSG, protein
structure initiative, PSI; 2.20A {Thermotoga maritima
MSB8} SCOP: c.66.1.41
Length = 219
Score = 43.6 bits (101), Expect = 5e-05
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 98 CVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM------EHTPFGSGQ 151
LMV + F +DP L E +R+L GG +IV + ++ R + + + +
Sbjct: 105 FALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDRESFLGREYEKNKEKSVFYKNAR 164
Query: 152 PYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFAGIYVIE 211
+S +++ L+R+A F ++LF P+ I + G G VI
Sbjct: 165 FFSTEELMDLMRKAGFEEFKVVQTLFKHPSELSEIEPVKE---------GYGEGAFVVIR 215
Query: 212 ARK 214
K
Sbjct: 216 GTK 218
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 43.3 bits (101), Expect = 5e-05
Identities = 18/133 (13%), Positives = 37/133 (27%), Gaps = 9/133 (6%)
Query: 7 ELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLG-----YAIPFFSCFHGKVERTL 61
++ + + K+L D +L LG + I KV
Sbjct: 19 QMPRSKEGLKAAGEWHELKKMLP----DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGID 74
Query: 62 AFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRV 121
A + ++ + + + VL L + + +++
Sbjct: 75 LSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYIN 134
Query: 122 LTSGGRMIVVVPN 134
L S G I V +
Sbjct: 135 LKSSGSFIFSVEH 147
>2yui_A Anamorsin; cytokine-induced apoptosis inhibitor 1, ciapin1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 182
Score = 43.1 bits (101), Expect = 5e-05
Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFL-MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTP 146
+SS D +L +L EI R+L GG + + P +E
Sbjct: 59 QSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEP--------VETAV 110
Query: 147 FGSGQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKL 189
+ + + ++ S L + + P + + +
Sbjct: 111 DNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREH 153
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 43.2 bits (101), Expect = 6e-05
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMW 139
LP +D+S+D ++ ++ AE E+ RV+ GG +I P R +
Sbjct: 141 RLPFSDTSMDAIIRIYAPCKAE-------ELARVVKPGGWVITATPGPRHLM 185
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, nucleus, phosphoprotein,
nuclear protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 42.9 bits (100), Expect = 6e-05
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKR 136
+PL D SVD + L + L E RVL GG + V + R
Sbjct: 108 QVPLEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSSR 155
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 42.2 bits (99), Expect = 1e-04
Identities = 47/226 (20%), Positives = 69/226 (30%), Gaps = 101/226 (44%)
Query: 35 VTGCRLLGLGYAIP--FFSCFHGKVERTLAFMPAG--QG---------ATNWPDQYFSS- 80
VT +LLG P S G G QG +W + +F S
Sbjct: 251 VT-AKLLGFT---PGELRSYLKGA---------TGHSQGLVTAVAIAETDSW-ESFFVSV 296
Query: 81 ----TALVSEG----------NLP---LADSSVD-------CVLMVHYLEFAE-DPFL-- 113
T L G +LP L DS ++ +L + L + ++
Sbjct: 297 RKAITVLFFIGVRCYEAYPNTSLPPSILEDS-LENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 114 ---MLHEIWRV---LTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREAN- 166
L +V L +G + +VV SG P S Y + LR+A
Sbjct: 356 TNSHLPAGKQVEISLVNGAKNLVV-----------------SGPPQSLYGLNLTLRKAKA 398
Query: 167 ----------FT---LSITSRSLFFP---PTHKKCILKLWSVFEKI 196
F+ L ++R F P P H L + I
Sbjct: 399 PSGLDQSRIPFSERKLKFSNR--FLPVASPFHSHL---LVPASDLI 439
Score = 32.2 bits (73), Expect = 0.095
Identities = 36/215 (16%), Positives = 66/215 (30%), Gaps = 74/215 (34%)
Query: 4 DIVE--LRQFYSSFLGKCTTDAISKVLSTTWDDVT--------------GCRLLGLGYAI 47
++ L +F + +L D + ++ T + +
Sbjct: 82 QVLNLCLTEFENCYL--EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 48 P-----FFSCFHGKVERTLA-FMPAGQGATNWPDQYFS------ST--ALVSEGNLPLAD 93
F + G + +A F GQG T D YF T LV L
Sbjct: 140 KSNSALFRAVGEGNA-QLVAIF--GGQGNT---DDYFEELRDLYQTYHVLVG----DLIK 189
Query: 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGM----W-ARMEHTP-- 146
S + + E + +V T +G+ W +TP
Sbjct: 190 FSAETL-----SELIRTT----LDAEKVFT------------QGLNILEWLENPSNTPDK 228
Query: 147 -FGSGQPYSWYQMISLLREANFTLSITSRSLFFPP 180
+ P S +I +++ A++ +T++ L F P
Sbjct: 229 DYLLSIPIS-CPLIGVIQLAHYV--VTAKLLGFTP 260
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus HB8} PDB: 2yr0_A
Length = 263
Score = 41.9 bits (97), Expect = 1e-04
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 12/86 (13%)
Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK------------RGMWARM 142
SV V++VH D +L E RVL GG ++ R A
Sbjct: 104 SVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEGWDQAEASPEWTLQERWRAFAAEE 163
Query: 143 EHTPFGSGQPYSWYQMISLLREANFT 168
++ LR
Sbjct: 164 GFPVERGLHAKRLKEVEEALRRLGLK 189
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative; HET: SAH; 2.30A {Bacillus
cereus atcc 14579} PDB: 2gh1_A
Length = 284
Score = 41.7 bits (97), Expect = 1e-04
Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 21/95 (22%)
Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN-------------------K 135
D + +L P ML ++ + GG++I P+ +
Sbjct: 89 KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQ 148
Query: 136 RGMWARMEHTPFGS--GQPYSWYQMISLLREANFT 168
G+ ++ + ++ L E
Sbjct: 149 LGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVK 183
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 41.2 bits (96), Expect = 2e-04
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 97 DCVLMVHYLEFA--EDPFLMLHEIWRVLTSGGRMIV---VVPNKRGMWAR---MEHTPFG 148
D L+ H L +D +L I + R++V ++ + +
Sbjct: 270 DVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAASTLFVDLLLLVLV 329
Query: 149 SGQPYSWYQMISLLREANFTL 169
G S + +LL ++ +
Sbjct: 330 GGAERSESEFAALLEKSGLRV 350
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 40.7 bits (94), Expect = 3e-04
Identities = 11/79 (13%), Positives = 23/79 (29%), Gaps = 4/79 (5%)
Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHT----PFGSG 150
D V A + + L GG M++ P R + A E +
Sbjct: 103 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACGVSSTS 162
Query: 151 QPYSWYQMISLLREANFTL 169
+ ++ + + +
Sbjct: 163 DFLTLPGLVGAFDDLGYDV 181
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 40.3 bits (93), Expect = 4e-04
Identities = 22/185 (11%), Positives = 52/185 (28%), Gaps = 24/185 (12%)
Query: 7 ELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERT-LAFMP 65
E+ Y L + VL + G G G V +
Sbjct: 29 EVFAHYEDILEDVVNKSFGNVL-----EF-GV---GTGNLTNKLLLAGRTVYGIEPSREM 79
Query: 66 AGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSG 125
P ++ + +P + ++ H+L ++ + + + ++L G
Sbjct: 80 RMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLT-DDEKNVAIAKYSQLLNKG 138
Query: 126 GRMIVVVPNKRGM--------WARMEHTPFGSGQPYSWY-----QMISLLREANFTLSIT 172
G+++ A+ + + Y M ++ F ++ T
Sbjct: 139 GKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFT 198
Query: 173 SRSLF 177
+ F
Sbjct: 199 RLNHF 203
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}
Length = 243
Score = 40.4 bits (93), Expect = 4e-04
Identities = 13/73 (17%), Positives = 25/73 (34%)
Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSW 155
++YL+ D R+LT GG+++ V + M + + S
Sbjct: 101 TILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETLFNGKTYATHAEQSS 160
Query: 156 YQMISLLREANFT 168
Y + E +
Sbjct: 161 YIWFADPGEEPLS 173
>2avn_A Ubiquinone/menaquinone biosynthesis methyltransferase-related
protein; TM1389, structural genomics; HET: SAI; 2.35A
{Thermotoga maritima MSB8} SCOP: c.66.1.41
Length = 260
Score = 40.0 bits (92), Expect = 4e-04
Identities = 23/110 (20%), Positives = 40/110 (36%), Gaps = 2/110 (1%)
Query: 37 GCRLLGLGYAIPFFS-CFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSS 95
CR+L LG +S + + P+ + ++ + +LP +
Sbjct: 55 PCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGA 114
Query: 96 VDCVLMVHY-LEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEH 144
+ VL + L + E+ EI RVL G +I V N +M
Sbjct: 115 FEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIE 164
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 40.0 bits (93), Expect = 5e-04
Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 7/64 (10%)
Query: 86 EGNLPLAD-SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEH 144
+G LP + ++ P ++ + + + V P
Sbjct: 101 KGELPAGLGAPFGLIVS------RRGPTSVILRLPELAAPDAHFLYVGPRLNVPEVPERL 154
Query: 145 TPFG 148
G
Sbjct: 155 AAVG 158
>1fp2_A Isoflavone O-methytransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 39.8 bits (92), Expect = 5e-04
Identities = 20/181 (11%), Positives = 51/181 (28%), Gaps = 24/181 (13%)
Query: 7 ELRQFYSSFLGKCTTDAISKVLSTTWDDVTGCRLL----GLGYAIPFFSCFHGKVERTLA 62
E ++ + + + + ++ G G K++ +
Sbjct: 159 EYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVF 218
Query: 63 FMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDP--FLMLHEIWR 120
P + + G++ + + D VL+ + L D +L +
Sbjct: 219 DRPQVVENLSGSNNLT-----YVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKE 273
Query: 121 VLTSGGRMIVVVPNKRGMWARMEHTPFG-------------SGQPYSWYQMISLLREANF 167
+T+ G+ V + + + +G+ + + L EA F
Sbjct: 274 AVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMACLNGKERNEEEWKKLFIEAGF 333
Query: 168 T 168
Sbjct: 334 Q 334
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 39.1 bits (90), Expect = 8e-04
Identities = 12/88 (13%), Positives = 30/88 (34%), Gaps = 4/88 (4%)
Query: 97 DCVLMVHYLEFAEDPFLM--LHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYS 154
+L + L L L + + GG +++ + + + P + +
Sbjct: 104 AGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPM--YHPVATAYRWP 161
Query: 155 WYQMISLLREANFTLSITSRSLFFPPTH 182
++ L A F ++ + FP +
Sbjct: 162 LPELAQALETAGFQVTSSHWDPRFPHAY 189
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
NP_988299.1, structural genomics, joint center for
structural genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 39.1 bits (90), Expect = 0.001
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 98 CVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR------------MEHT 145
++ + F ED EI+R+L SGG+ + +
Sbjct: 114 LIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEF 173
Query: 146 PFGSGQPYSWYQMISLLREANFT 168
+ + + ++L E +
Sbjct: 174 NRKNISQENVERFQNVLDEIGIS 196
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A*
Length = 225
Score = 38.4 bits (88), Expect = 0.001
Identities = 13/111 (11%), Positives = 28/111 (25%), Gaps = 3/111 (2%)
Query: 62 AFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRV 121
P+ G +N ++ +L E S+ + +L + +
Sbjct: 69 IKKPSKGGLSNVVFVIAAAESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADL 128
Query: 122 LTSGGRMIVVVPNKRGM---WARMEHTPFGSGQPYSWYQMISLLREANFTL 169
V + P S + Q + L + F +
Sbjct: 129 AKKEAHFEFVTTYSDSYEEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRI 179
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 38.4 bits (89), Expect = 0.001
Identities = 6/41 (14%), Positives = 16/41 (39%)
Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKR 136
+ +++YLE + + ++L GG ++
Sbjct: 118 IVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDA 158
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase- like
protein, methyltransferase domain; 1.85A {Lactobacillus
casei atcc 334}
Length = 275
Score = 38.5 bits (88), Expect = 0.002
Identities = 8/102 (7%), Positives = 24/102 (23%), Gaps = 18/102 (17%)
Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN-----------------KRG 137
D V++ H L + + + + V + +
Sbjct: 122 HFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQIGHLQAAMIQGL 181
Query: 138 MWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFP 179
++A + + + + +T + P
Sbjct: 182 LYAIAPSDVANIRTLITPDTLAQIAHDNTWTY-TAGTIVEDP 222
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 38.1 bits (88), Expect = 0.002
Identities = 24/137 (17%), Positives = 40/137 (29%), Gaps = 9/137 (6%)
Query: 42 GLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLM 101
G G + H ++ L + V EG+ D ++
Sbjct: 194 GRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVL 253
Query: 102 VHYLEFAEDP--FLMLHEIWRVLTSGGRMIV---VVPNKRGMWAR----MEHTPFGSGQP 152
L D +L RV+ + GR++V VVP +GQ
Sbjct: 254 KRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAHQSKEMDFMMLAARTGQE 313
Query: 153 YSWYQMISLLREANFTL 169
+ ++ L A L
Sbjct: 314 RTAAELEPLFTAAGLRL 330
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genomics, JCSG;
HET: SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 36.5 bits (83), Expect = 0.005
Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 18/88 (20%)
Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN---------KRGMWARMEHTP 146
+ + + +D +L + +L GG +++ + + G
Sbjct: 120 ICANFALLH----QDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGF 175
Query: 147 FGSGQPYSWY-----QMISLLREANFTL 169
G QP WY ++ L A L
Sbjct: 176 AGDWQPMPWYFRTLASWLNALDMAGLRL 203
>2i6g_A Putative methyltransferase; 16420133, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; HET: MLY; 1.90A {Salmonella typhimurium LT2}
SCOP: c.66.1.44
Length = 199
Score = 36.3 bits (83), Expect = 0.006
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF 147
+ +++ +LE P ++ + R GG ++V + PF
Sbjct: 100 ILSTVVMMFLEAQTIP-GLIANMQRCTXPGGYNLIVAAMDTPDFPCTVGFPF 150
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 36.0 bits (82), Expect = 0.008
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 7/79 (8%)
Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK-------RGMWARMEHTPFGS 149
D + + D + E+ RVL GR ++V +
Sbjct: 89 DIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVNHLNRLRDPSH 148
Query: 150 GQPYSWYQMISLLREANFT 168
+ S + ++
Sbjct: 149 VRESSLSEWQAMFSANQLA 167
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45
Length = 541
Score = 35.7 bits (81), Expect = 0.009
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 12/145 (8%)
Query: 87 GNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTP 146
N P ++ + + + I L GGR V +
Sbjct: 267 TNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAV-------VVPDNVLFE 319
Query: 147 FGSGQPYSWYQMISLLREANFTLSITSRS-LFFPPTHKKCILKLWSVFEKIGNIFGPGFA 205
G G L+ + + + + +F+ K +L N
Sbjct: 320 GGKGTDIRRD----LMDKCHLHTILRLPTGIFYAQGVKTNVLFFTKGTVANPNQDKNCTD 375
Query: 206 GIYVIEARKILYQGLPITESKKKHI 230
++V + R + T +H+
Sbjct: 376 DVWVYDLRTNMPSFGKRTPFTDEHL 400
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in europe; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 35.6 bits (81), Expect = 0.011
Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 11/88 (12%)
Query: 93 DSSVDCVLMVHYLEFA--EDPFLMLHEIWRVLTSGGRMIVV---------VPNKRGMWAR 141
+ D VL+ L ED +L R L GGR++V+
Sbjct: 246 PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLLD 305
Query: 142 MEHTPFGSGQPYSWYQMISLLREANFTL 169
+ F G+ + +++ L A L
Sbjct: 306 LRMLTFMGGRVRTRDEVVDLAGSAGLAL 333
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent
methyltransferase, structural genomics, PSI-2, protein
structure initiative; HET: SAH; 1.95A {Agrobacterium
tumefaciens str}
Length = 259
Score = 35.0 bits (79), Expect = 0.015
Identities = 12/77 (15%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK------RGMWARMEHTPFGSG 150
D + ++ D +L ++ L SGG + V +P+ M + P+
Sbjct: 97 DLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDA 156
Query: 151 QPYSWYQMISLLREANF 167
+ L +++
Sbjct: 157 FSGGGLRRKPLPPPSDY 173
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 34.7 bits (78), Expect = 0.017
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMW-----ARMEHTPFGSG 150
+ V + L I R L + GR ++ RG E
Sbjct: 111 IVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVGLELE 170
Query: 151 QPYSWYQMISLLREANFTLSITSR 174
+ + + ++ + F +++ ++
Sbjct: 171 NAFESWDLKPFVQGSEFLVAVFTK 194
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid; HET: SAM; 2.00A
{Escherichia coli}
Length = 200
Score = 34.8 bits (79), Expect = 0.019
Identities = 4/58 (6%), Positives = 17/58 (29%)
Query: 84 VSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR 141
+ + D V ++ L + + + + ++ + +I +
Sbjct: 104 FLNKESDVYKGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFPIKSLSGKEK 161
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, S-adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum tls} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 34.6 bits (78), Expect = 0.020
Identities = 18/163 (11%), Positives = 42/163 (25%), Gaps = 14/163 (8%)
Query: 16 LGKCTTDAISKVLSTTWDDVTGCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGATNWPD 75
L + D + K++ G + P + A + A
Sbjct: 183 LEEAKLDGVKKMI--DVGGGIGDISAAMLKHFPELDSTILNLPG--AIDLVNENAAEKGV 238
Query: 76 QYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIV---VV 132
V ++ + Y + +M + + + SGGR+++ V+
Sbjct: 239 ADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 298
Query: 133 PNKRG-------MWARMEHTPFGSGQPYSWYQMISLLREANFT 168
+ + PF + +L +
Sbjct: 299 DDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYK 341
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 34.6 bits (79), Expect = 0.021
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 6/55 (10%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARM 142
S D + + ++ + + L GGR+IV + K
Sbjct: 137 YGVPEFSPYDVIFVTVGVDE------VPETWFTQLKEGGRVIVPINLKLSRRQPA 185
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 34.6 bits (78), Expect = 0.022
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 114 MLHEIWRVLTSGGRMIVV--------VPNKRGMWARMEHTPFGSGQPYSWYQMISLLREA 165
+L L GGR+++ N++ + F G + + L A
Sbjct: 270 ILTRCAEALEPGGRILIHERDDLHENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASA 329
Query: 166 NFTL 169
+
Sbjct: 330 GLVV 333
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 34.5 bits (78), Expect = 0.023
Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 109 EDPFLMLHEIWRVLTSGGRMIVVVP----NKRGMWARMEHTPFGSGQPYSWYQMISLLRE 164
+L SGG ++V+ G + + G+ S ++ L +
Sbjct: 251 LSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKERSLAELGELAAQ 310
Query: 165 ANFTL 169
A +
Sbjct: 311 AGLAV 315
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 34.4 bits (78), Expect = 0.026
Identities = 25/189 (13%), Positives = 44/189 (23%), Gaps = 24/189 (12%)
Query: 12 YSSFLGKCTTDAISKVLSTTWDDVTGCRLL----GLGYAIPFFSCFHGKVERTLAFMPAG 67
Y + A L +L G GY S +V
Sbjct: 22 YDATFVPYMDSAAPAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMI 81
Query: 68 QGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFL--MLHEIWRVLTSG 125
A D D V H+L D + + G
Sbjct: 82 AEAGRHGLDNVEFRQQDLFD--WTPDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPG 139
Query: 126 GRMIVV--VPNKRGMWARMEHTP-------FGSGQPYSWY-------QMISLLREANFTL 169
G + V ++R + + + P G+ + ++ L ++
Sbjct: 140 GVVEFVDVTDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC 199
Query: 170 SITSRSLFF 178
S+ F
Sbjct: 200 SVDEVHPGF 208
>1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine
methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP:
c.66.1.31
Length = 416
Score = 33.6 bits (76), Expect = 0.040
Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 88 NLPLADSSVDC-VLMVHYLEFAEDPFLMLHEIWRVLTSGGRMI 129
+ + + V+ V+ F + L E + + GGR++
Sbjct: 225 SEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIV 267
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 33.2 bits (75), Expect = 0.050
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 22/117 (18%)
Query: 88 NLPLADSSVDC-VLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIV---VVPNKRGMWARME 143
N +A+ C V++V+ F ED + +I + G ++I + +
Sbjct: 314 NNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKSLRSLTYQINFYNV 373
Query: 144 HTPFG----------------SGQPYSWYQ--MISLLREANFTLSITSRSLFFPPTH 182
F + +Y ++ + E+ F+ + R P
Sbjct: 374 ENIFNRLKVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAARGRRNRGTPVK 430
>1vl5_A Unknown conserved protein BH2331; 10174951, hypothetical protein,
structural genomics, JCSG, protein structure initiative,
PSI; HET: MSE; 1.95A {Bacillus halodurans c-125} SCOP:
c.66.1.41
Length = 260
Score = 33.4 bits (75), Expect = 0.052
Identities = 24/143 (16%), Positives = 44/143 (30%), Gaps = 13/143 (9%)
Query: 37 GCRLLGLGYAIPFFSCFHGKV---ERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLAD 93
G G+ F+ F KV + T + + +P D
Sbjct: 45 AT---GGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101
Query: 94 SSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR-------MEHTP 146
V +P + E +RVL GG++++V + A +
Sbjct: 102 ERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYNYVEKERD 161
Query: 147 FGSGQPYSWYQMISLLREANFTL 169
+ + + + +L EA F L
Sbjct: 162 YSHHRAWKKSDWLKMLEEAGFEL 184
>3dmg_A Probable ribosomal RNA small subunit methyltransferase;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A*
Length = 381
Score = 33.3 bits (75), Expect = 0.052
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 19/126 (15%)
Query: 33 DDVTGCRLLGLGYAIPFFSCFHGK----------VERTLAFMPAGQGATNWPDQYFSSTA 82
+ V G ++L LG + + ++ + G A Q S
Sbjct: 230 EGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDV 289
Query: 83 LVSEGNLPLADSSVDCVLMVHYLEFA-----EDPFLMLHEIWRVLTSGGRMIVVVPNKRG 137
++ D ++ + ++ L GG +V
Sbjct: 290 D----EALTEEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVSNPFLK 345
Query: 138 MWARME 143
+E
Sbjct: 346 YEPLLE 351
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase;
rossmann fold, protein-small molecule complex; HET: SAH
SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Length = 359
Score = 33.0 bits (75), Expect = 0.059
Identities = 18/79 (22%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 86 EGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHT 145
+GN+ +A++ VL +Y +F ED L L + + GGRM++ + R
Sbjct: 163 KGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL------GRRSED 216
Query: 146 PFGSGQPYSWYQMISLLRE 164
+ W + L +
Sbjct: 217 RASTECCLIWQLLAMALNQ 235
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus HB27}
Length = 258
Score = 33.1 bits (75), Expect = 0.060
Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 34/129 (26%)
Query: 91 LADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSG 150
L ++ ++ +P+ +L + L ++ +PN +
Sbjct: 157 LEEAELEEAAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLPNITQV------------ 204
Query: 151 QPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFAGI--- 207
+++ F L + + W V + P F +
Sbjct: 205 -----LELVRAAEAHPFRLERV----------LEVGWREWEV---RLPVAHPRFQQVGHT 246
Query: 208 -YVIEARKI 215
+++ R+
Sbjct: 247 AFLVALRRW 255
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research, nysgxrc; 2.33A {Bacteroides vulgatus atcc
8482}
Length = 363
Score = 32.9 bits (74), Expect = 0.064
Identities = 19/205 (9%), Positives = 58/205 (28%), Gaps = 23/205 (11%)
Query: 7 ELRQFYSSFLGKCTTDAISKVLS-------TTWDDV---TGCRLLGLGYAIPFFSCFHGK 56
++++ + F + + K L D+ TG
Sbjct: 151 QVQKSWFGFDHFYSDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVD 210
Query: 57 VERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAE-DPFLML 115
+ + L M + ++ A + + ++P + F+E + +L
Sbjct: 211 LPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISIL 270
Query: 116 HEIWRVLTSGGRMIVV------------VPNKRGMWARMEHTPFGSGQPYSWYQMISLLR 163
+ + + ++ ++ + G+ + + +I +
Sbjct: 271 TRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQISLYFTAMANGNSKMFHSDDLIRCIE 330
Query: 164 EANFTLSITSRSLFFPPTHKKCILK 188
A + ++ + +C LK
Sbjct: 331 NAGLEVEEIQDNIGLGHSILQCRLK 355
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 32.4 bits (73), Expect = 0.091
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 10/70 (14%)
Query: 97 DCVLMVHYLEFAEDPFL--MLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYS 154
D ++ F + ++ + GG ++V M P+S
Sbjct: 186 DFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAA--------MSTDDVPCPLPFS 237
Query: 155 WYQMISLLRE 164
+ + L+E
Sbjct: 238 FTFAENELKE 247
>2imh_A Hypothetical protein UNP Q5LQD5_silpo; structural genomics, unknown
function, PSI-2, protein structure initiative; HET: MSE;
1.57A {Silicibacter pomeroyi} SCOP: d.153.1.7
Length = 231
Score = 32.2 bits (73), Expect = 0.11
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 58 ERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHE 117
R LA + A +GA + S+ LV + P +D ++P L +
Sbjct: 144 RRLLAALIAAEGAGSDFRGLLSAAMLVLHPDRPPVTLRID--------YHPDNPIGALEQ 195
Query: 118 IWRV 121
+++
Sbjct: 196 LYQK 199
>3lcc_A Putative methyl chloride transferase; halide methyltransferase;
HET: SAH; 1.80A {Arabidopsis thaliana}
Length = 235
Score = 32.0 bits (72), Expect = 0.13
Identities = 23/168 (13%), Positives = 42/168 (25%), Gaps = 21/168 (12%)
Query: 37 GCRLLGLGYAIPFFSCFHGKVERTLAFMPAGQGAT-------NWPDQYFSSTALVSEGNL 89
GC G G+ + + V A A F + +
Sbjct: 74 GC---GGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPT 130
Query: 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGS 149
L D D V ++ +L G +I ++ + + P+
Sbjct: 131 ELFDLIFDYVFFCAIEPE--MRPAWAKSMYELLKPDGELITLM---YPITDHVGGPPYK- 184
Query: 150 GQPYSWYQMISLLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIG 197
+L F + PT K + ++KI
Sbjct: 185 ---VDVSTFEEVLVPIGFKAVSVEENPHAIPTRKG--KEKLGRWKKIN 227
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1- carboxylic acid, PHZM; 1.80A {Pseudomonas
aeruginosa PAO1}
Length = 334
Score = 31.8 bits (71), Expect = 0.14
Identities = 10/82 (12%), Positives = 27/82 (32%), Gaps = 9/82 (10%)
Query: 97 DCVLMVHYLEFAEDPFLM--LHEIWRVLTSGGRMIV---VVPNKRGMWAR----MEHTPF 147
D L+ + ++ + L + GR++V + +
Sbjct: 235 DIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMA 294
Query: 148 GSGQPYSWYQMISLLREANFTL 169
+G+ + +++ LL F +
Sbjct: 295 CAGRHRTTEEVVDLLGRGGFAV 316
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A
Length = 267
Score = 31.8 bits (71), Expect = 0.14
Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 4/83 (4%)
Query: 90 PLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF-- 147
P + +D + + L+E + L GG + V + E F
Sbjct: 109 PFRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERPAEINDFWM 167
Query: 148 -GSGQPYSWYQMISLLREANFTL 169
+ + ++ + +A +
Sbjct: 168 DAYPEIDTIPNQVAKIHKAGYLP 190
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural genomics,
joint center for structural genomics, JCSG; HET: SAH;
2.11A {Anabaena variabilis atcc 29413}
Length = 245
Score = 31.7 bits (70), Expect = 0.14
Identities = 14/119 (11%), Positives = 35/119 (29%), Gaps = 2/119 (1%)
Query: 61 LAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWR 120
+A ++ ++ + + D+++ H++ E L+ +
Sbjct: 93 IAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIP-VEKRELLGQSLRI 151
Query: 121 VLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITSRSLFFP 179
+L G M ++ G GQ ++ + L+FP
Sbjct: 152 LLGKQGAMYLIELG-TGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYFP 209
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii OT3} SCOP: c.66.1.43
Length = 252
Score = 31.6 bits (70), Expect = 0.15
Identities = 7/37 (18%), Positives = 10/37 (27%)
Query: 98 CVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134
ED + ++ L GG I P
Sbjct: 111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPC 147
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine; HET: SAH; 2.7A {Vaccinia virus}
Length = 302
Score = 31.3 bits (70), Expect = 0.17
Identities = 9/80 (11%), Positives = 27/80 (33%), Gaps = 3/80 (3%)
Query: 72 NWPDQYFSSTALVSEGNLPLADSSVDCVLM---VHYLEFAEDPFLMLHEIWRVLTSGGRM 128
++ + S VS + + +HY +++ + + SGG++
Sbjct: 106 DYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKV 165
Query: 129 IVVVPNKRGMWARMEHTPFG 148
++ + + + F
Sbjct: 166 LITTMDGDKLSKLTDKKTFI 185
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural genomics consortium, SGC; HET: SAM; 2.50A
{Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 30.9 bits (69), Expect = 0.27
Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 5/65 (7%)
Query: 70 ATNWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMI 129
WPD +S + + D V + +P + L + L GG
Sbjct: 162 VEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCA 216
Query: 130 VVVPN 134
V V N
Sbjct: 217 VYVVN 221
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics, protein structure initiative, PSI;
HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 30.7 bits (68), Expect = 0.30
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 86 EGNLPLADSSVDCVLM---------VHYLEFAEDPFLMLHEIWRVLTSGGRMIVVV 132
+ D V V+ E L + +L +GG + VV+
Sbjct: 84 QNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI 139
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomics,
JCSG, PSI, protein structure initiative; 1.65A
{Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 30.7 bits (69), Expect = 0.32
Identities = 17/119 (14%), Positives = 32/119 (26%), Gaps = 34/119 (28%)
Query: 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSGQPYSWYQMIS 160
+ DP+ + + W L GGR V P + +
Sbjct: 182 VDALFLDVPDPWNYIDKCWEALKGGGRFATVCPT-------TNQV----------QETLK 224
Query: 161 LLREANFTLSITSRSLFFPPTHKKCILKLWSVFEKIGNIFGPGFAGI----YVIEARKI 215
L+E F + + + + + P + Y+I A K+
Sbjct: 225 KLQELPFIR----------IEVWESLFRPYKP---VPERLRPVDRMVAHTAYMIFATKV 270
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 30.7 bits (68), Expect = 0.33
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 80 STALVSEGNLPLADSSVDCVL----MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNK 135
S+ + D + E E +ML L+ GG I PN
Sbjct: 99 SSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNS 158
Query: 136 RGMWARME 143
+ R+E
Sbjct: 159 FELIRRLE 166
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 29.9 bits (66), Expect = 0.51
Identities = 19/104 (18%), Positives = 38/104 (36%), Gaps = 12/104 (11%)
Query: 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPFGSG-----QPYSW 155
+ +E + I R L GG I+ VP++ + R + +
Sbjct: 143 FHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKME 202
Query: 156 YQMISLLREANFTL--SITSRSLFFPPTHKKCILKLWSVFEKIG 197
+ +RE FTL S+ + +F ++ F+++G
Sbjct: 203 DVPMESVREYRFTLLDSVNNCIEYFVDFT-----RMVDGFKRLG 241
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 29.9 bits (67), Expect = 0.55
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 101 MVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134
+ H + P ++ + L GG + P
Sbjct: 163 VDHVILDLPQPERVVEHAAKALKPGGFFVAYTPC 196
>2r3s_A Uncharacterized protein; ZP_00112478.1, methyltransferase domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 2.15A {Nostoc punctiforme pcc
73102}
Length = 335
Score = 29.6 bits (65), Expect = 0.62
Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVV---------VPNKRGMWARMEHTP 146
+ + + +L +I L G++IV P ++ +
Sbjct: 235 LVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITPPDAAAFSLVMLAT 294
Query: 147 FGSGQPYSWYQMISLLREANFT 168
+G Y++ + S+ A F+
Sbjct: 295 TPNGDAYTFAEYESMFSNAGFS 316
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 29.6 bits (65), Expect = 0.73
Identities = 9/98 (9%), Positives = 23/98 (23%), Gaps = 14/98 (14%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFL--MLHEIWRVLTSGGRMIVVVPN----------K 135
D ++ +E + L ++ +IV PN
Sbjct: 95 YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKI-VIVTTPNIEYNVKFANLP 153
Query: 136 RGMWARMEHTPFGSGQPYSWYQMISLLREANFTLSITS 173
G +H + + + + + +
Sbjct: 154 AGKLRHKDHRFEWTRSQFQNW-ANKITERFAYNVQFQP 190
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 29.3 bits (65), Expect = 0.76
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 96 VDCVLMVHYLEFAEDPFL--MLHEIWRVLTSGGRMIVVVPNKRGMWARME 143
+ H ++ R L SGG + +V ++
Sbjct: 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLD 314
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, PSI, protein structure initiative; HET: SAM;
1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 29.1 bits (65), Expect = 0.83
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 110 DPFLMLHEIWRVLTSGGRMIVVVPN 134
P+ +L + R+L +GG ++V V
Sbjct: 181 APWEVLDAVSRLLVAGGVLMVYVAT 205
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291; HET: SAH; 1.30A {Homo
sapiens}
Length = 215
Score = 29.3 bits (64), Expect = 0.85
Identities = 30/153 (19%), Positives = 43/153 (28%), Gaps = 31/153 (20%)
Query: 37 GCRLLGLGYAIPFFS------CFHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLP 90
R+L LG S F + + + + L
Sbjct: 43 EDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD 102
Query: 91 LADSSVDCVLMVHYL---------------EFAEDPFLMLHEIWRVLTSGGRMIVV---V 132
+S D VL L E +L E+ RVL GGR I +
Sbjct: 103 FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162
Query: 133 PNKRGMWAR-------MEHTPFGSGQPYSWYQM 158
P+ R + H +GSG + Y M
Sbjct: 163 PHFRTRHYAQAYYGWSLRHATYGSGFHFHLYLM 195
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics,
hypothetical protein, structure 2 function project, S2F;
HET: SAI; 2.20A {Haemophilus influenzae rd KW20} SCOP:
c.66.1.14
Length = 244
Score = 29.0 bits (64), Expect = 1.0
Identities = 10/105 (9%), Positives = 29/105 (27%), Gaps = 24/105 (22%)
Query: 88 NLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMW-------- 139
++ + ++S+ + ED +L +I+ L G +++ +
Sbjct: 122 HVEIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLID 181
Query: 140 ----------------ARMEHTPFGSGQPYSWYQMISLLREANFT 168
++ + S L+ F+
Sbjct: 182 LHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFS 226
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
Length = 257
Score = 28.5 bits (62), Expect = 1.4
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 4/78 (5%)
Query: 95 SVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWARMEHTPF---GSGQ 151
+D + + ++E + L GG + V + E F +
Sbjct: 114 ELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERPAEIEDFWMDAYPE 172
Query: 152 PYSWYQMISLLREANFTL 169
I + A +T
Sbjct: 173 ISVIPTCIDKMERAGYTP 190
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, midwest center for structural
genomics, MCSG; 2.01A {Thermoplasma acidophilum dsm
1728} SCOP: c.66.1.13
Length = 275
Score = 27.7 bits (61), Expect = 2.7
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 1/38 (2%)
Query: 97 DCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPN 134
D + + DP+ + +I ++ G +PN
Sbjct: 177 DQMYDAVIADIP-DPWNHVQKIASMMKPGSVATFYLPN 213
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 27.5 bits (60), Expect = 2.8
Identities = 13/94 (13%), Positives = 23/94 (24%), Gaps = 21/94 (22%)
Query: 96 VDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVVVPNKRGMWAR-------------- 141
+ + Y + W+ L GG ++ +
Sbjct: 191 LTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDL 250
Query: 142 -MEHTPFGSGQPYSWY------QMISLLREANFT 168
++ F W Q + L EA FT
Sbjct: 251 QLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFT 284
>1or8_A Protein arginine N-methyltransferase 1; protein arginine
methylation, adoMet-dependent methylation, transferase;
HET: SAH; 2.35A {Rattus norvegicus} SCOP: c.66.1.6 PDB:
1orh_A* 1ori_A*
Length = 340
Score = 27.4 bits (60), Expect = 2.9
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 88 NLPLADSSVDCVLMV---HYLEFAEDPFLMLHEIWRVLTSGGRMI 129
+ L VD ++ + L + +LH + L G +
Sbjct: 117 EVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 161
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant
methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A
{Coffea canephora} PDB: 2eg5_A*
Length = 384
Score = 27.6 bits (61), Expect = 2.9
Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 51 SCFHGKV--ERTLAFMPAGQGATNWPDQYFSS-----TALVSEGNLPLADSSVDCVLMVH 103
F+ ++ E ++ F+ + +W Q S V++G + + +S + +
Sbjct: 138 GSFYSRLFPEESMHFLHSC-YCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAY 196
Query: 104 YLEFAEDPFLMLHEIWRVLTSGGRMIVV 131
+F +D L L S GRM++
Sbjct: 197 LDQFTKDFTTFLRIHSEELISRGRMLLT 224
>1wny_A Isoleucyl-tRNA synthetase; ligase, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; 1.60A {Thermus thermophilus} PDB: 1wnz_A*
1wk8_A* 1udz_A 1ue0_A
Length = 186
Score = 26.8 bits (58), Expect = 4.4
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 181 THKKCILKLWSVFEKIGNIFGPGFAGIYVIEARKI 215
T + L L ++ G + F G+Y EA +
Sbjct: 132 TARVYGLPLLKTVDEEGKLLVEPFKGLYFREANRA 166
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein, transferase; HET:
TNA MTA; 1.66A {Methanothermobacterthermautotrophicus}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A*
Length = 298
Score = 26.6 bits (58), Expect = 4.6
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 72 NWPDQYFSSTALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLHEIWRVLTSGGRMIVV 131
+++ + D +++ AE + I R + + R+I
Sbjct: 165 VIEGLGVDGVNVITGDETVIDGLEFDVLMVAA---LAEPKRRVFRNIHRYVDTETRIIYR 221
Query: 132 VPN 134
Sbjct: 222 TYT 224
>3es5_A Putative capsid protein; partitivirus, RNA virus, double stranded
RNA virus, dsRNA virus, "T=2" capsid, icosahedral virus;
3.30A {Penicillium stoloniferum virus F}
Length = 420
Score = 26.7 bits (58), Expect = 5.2
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 53 FHGKVERTLAFMPAGQGATNWPDQYFSSTALVSEGNLPLADSSVD 97
F +VE P G T + Q SST + PL+D+ ++
Sbjct: 333 FKWRVESIFKVGPPPAGTTGYGAQTVSSTGNTARWQFPLSDADIN 377
>1xva_A Glycine N-methyltransferase; HET: SAM; 2.20A {Escherichia coli}
SCOP: c.66.1.5 PDB: 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 292
Score = 26.3 bits (56), Expect = 6.0
Identities = 9/72 (12%), Positives = 22/72 (30%), Gaps = 7/72 (9%)
Query: 82 ALVSEGNLPLADSSVDCVLMVHYLEFAEDPFLMLH-------EIWRVLTSGGRMIVVVPN 134
L + ++P D + + + D I ++ GG +++ N
Sbjct: 117 WLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176
Query: 135 KRGMWARMEHTP 146
+ + P
Sbjct: 177 YDYILSTGCAPP 188
>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine
methyltransferase 4, APO catalytic domain, alternative
splicing; 2.55A {Rattus norvegicus}
Length = 480
Score = 26.2 bits (57), Expect = 7.7
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 94 SSVDCVL--MVHYLEFAEDPFLMLHEIWRVLTSGGRMI 129
VD ++ + Y+ F E + L G M
Sbjct: 223 EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260
>1e09_A PRU AV 1; allergen, major cherry allergen, pathogenesis-related
protein, heteronuclear structure; NMR {Prunus avium}
SCOP: d.129.3.1 PDB: 1h2o_A
Length = 159
Score = 25.9 bits (57), Expect = 8.2
Identities = 12/68 (17%), Positives = 21/68 (30%), Gaps = 16/68 (23%)
Query: 147 FGSGQPYSWY-QMISLLREANFTL---------------SITSRSLFFPPTHKKCILKLW 190
FG G Y + I + + N++ I+ + I+K
Sbjct: 58 FGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKST 117
Query: 191 SVFEKIGN 198
S + GN
Sbjct: 118 SHYHTKGN 125
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.324 0.139 0.442
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,174,728
Number of extensions: 96966
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 92
Length of query: 242
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 152
Effective length of database: 3,511,270
Effective search space: 533713040
Effective search space used: 533713040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.7 bits)