HHsearch alignment for GI: 254780583 and conserved domain: COG1236
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].
Probab=98.65 E-value=2.4e-08 Score=74.82 Aligned_cols=116 Identities=19% Similarity=0.288 Sum_probs=75.9
Q ss_pred EEEEEEECCCCEEEEECCCCHHH----HHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHH-HCCCEEEECCCCCC-----
Q ss_conf 26999988998499986999899----999999859964399985898433000001111-00010120001234-----
Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPDTYI----ISKMLREKGWFLTHIFNTHHHIDHTRANLNLKK-FFNCTIFGPLEESS----- 84 (256)
Q Consensus 15 y~YlI~d~~t~~~viIDpgd~~~----i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~-~~~~~v~~~~~~~~----- 84 (256)
T Consensus 15 s~~~l~~~--~~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~~~v~aT~~T~~l~~~~ 91 (427)
T COG1236 15 SCVLLETG--GTRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFEGPVYATPPTAALLKVL 91 (427)
T ss_pred EEEEEEEC--CCEEEECCCCCCCCCCCCCCCCCCCC-CCCEEEEECCCHHHHCCCHHHHHHCCCCCEEECHHHHHHHHHH
T ss_conf 46898747--97699658988576765576788888-7677996006524323467887631278657535189999987
Q ss_pred -----CCC-----------------CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEEC--CCCCCCCCCE
Q ss_conf -----323-----------------3220331010011112223310255445675226861--4654313770
Q gi|254780583|r 85 -----KIP-----------------GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFM--NDHFLCVGDT 134 (256)
Q Consensus 85 -----~i~-----------------~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~--~~~~lFtGDt 134 (256)
T Consensus 92 l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~-AGHilGsa~~~le~~~~~ilytGD~ 164 (427)
T COG1236 92 LGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYN-AGHILGSAAILLEVDGGRILYTGDV 164 (427)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEEC-CCCCCCEEEEEEEECCCEEEEEECC
T ss_conf 311101035777776543456655522277058981786528999971-7974102799999689479998236