HHsearch alignment for GI: 254780583 and conserved domain: TIGR02649
>TIGR02649 true_RNase_BN ribonuclease BN; InterPro: IPR013469 Proteins in this entry include ribonuclease BN of Escherichia coli (strain K-12) and closely related proteins believed to be equivalent in function. E. coli appears to lack RNase Z, and this ribonuclease appears to be orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. ; GO: 0016891 endoribonuclease activity producing 5'-phosphomonoesters, 0042779 removal of tRNA 3'-trailer sequence.
Probab=93.57 E-value=0.21 Score=29.90 Aligned_cols=160 Identities=18% Similarity=0.191 Sum_probs=92.2
Q ss_pred EEEEECCCEEEEEE---ECCCCEEEEECCCCHH--HHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHH-HH------CCC
Q ss_conf 30110576269999---8899849998699989--999999985996439998589843300000111-10------001
Q gi|254780583|r 7 AISLYHDNFCILIH---NHKYRLTAAIDAPDTY--IISKMLREKGWFLTHIFNTHHHIDHTRANLNLK-KF------FNC 74 (256)
Q Consensus 7 ~ip~~~DNy~YlI~---d~~t~~~viIDpgd~~--~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~-~~------~~~ 74 (256)
T Consensus 10 GvPtr~rnvtaill~lqhPtq~G~WlfdCGeGtqhq~l~taf~-PGkl~~ifishlhGdhlfGlPGllCsrsm~G~~~Pl 88 (304)
T TIGR02649 10 GVPTRSRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLNTAFN-PGKLEKIFISHLHGDHLFGLPGLLCSRSMAGIIQPL 88 (304)
T ss_pred CCCCCCHHHHHHEEECCCCCCCCEEEEECCCCHHHHHHHHHCC-CCCCEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCE
T ss_conf 8875510120000100487767406887687526788874148-875003575422365001553134433313777640
Q ss_pred EEEECCCCCCCC------CC-------CCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC--CCCCCCCEEEECC
Q ss_conf 012000123432------33-------22033101001111222331025544567522686146--5431377043046
Q gi|254780583|r 75 TIFGPLEESSKI------PG-------IDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND--HFLCVGDTLFSLG 139 (256)
Q Consensus 75 ~v~~~~~~~~~i------~~-------~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~--~~lFtGDtLF~~g 139 (256)
T Consensus 89 t~yGPqG~ref~~t~lr~sGsWtd~Pl~i~ei~aG~ilddGlrkvta~~le-hPleCyGyr~~ehdkPGalna~alkaaG 167 (304)
T TIGR02649 89 TVYGPQGVREFVETALRLSGSWTDYPLEIVEISAGEILDDGLRKVTAYRLE-HPLECYGYRVVEHDKPGALNARALKAAG 167 (304)
T ss_pred EEECCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHCCHHEEEECCC-CCCEECCEEEEECCCCCCHHHHHHHHCC
T ss_conf 675662168898766421111013651578622541122000100120146-8610011067751787502247776458
Q ss_pred CCCCCCCCHHHHHHHHH--HHHCCCCCCEEECCCCCHH
Q ss_conf 13446663156776654--4201344650201665204
Q gi|254780583|r 140 CGRIFEDSYAEMFESLE--KIKSFSDKTHIYFGHEYTE 175 (256)
Q Consensus 140 ~Gr~~~G~~~~l~~Sl~--kl~~Lp~~t~i~pGHeYt~ 175 (256)
T Consensus 168 v------~PGPlfq~lkaGkt~tl~dGrqi-nGadyla 198 (304)
T TIGR02649 168 V------TPGPLFQELKAGKTVTLEDGRQI-NGADYLA 198 (304)
T ss_pred C------CCCHHHHHHHCCCEEEECCCCEE-CCCHHHC
T ss_conf 9------98514676534865772267420-3301101