HHsearch alignment for GI: 254780583 and conserved domain: TIGR02650

>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type; InterPro: IPR013470 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Proteins in this entry, by contrast are ribonuclease Z enzymes with unusual activity. Organisms containing these proteins include the CCA sequence in the tRNA precursor and ribonuclease Z cleaves the molecule immediately after this sequence producing a mature 3' end. The sequence of these proteins differs considerably from the majority of ribonuclease Z sequences..
Probab=94.45  E-value=0.015  Score=37.20  Aligned_cols=100  Identities=19%  Similarity=0.287  Sum_probs=58.7

Q ss_pred             EEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHC---------CCEEEECCCCC---
Q ss_conf             699998899849998699989999999985996439998589843300000111100---------01012000123---
Q gi|254780583|r   16 CILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF---------NCTIFGPLEES---   83 (256)
Q Consensus        16 ~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~---------~~~v~~~~~~~---   83 (256)
T Consensus        12 tWiyysPe---rilfdaGeG--vsttlGskvyafkyvflthGhvdhiaGlWGvvnirnnGmGdrekPldvfyP~Gnrave   86 (277)
T TIGR02650        12 TWIYYSPE---RILFDAGEG--VSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPKGNRAVE   86 (277)
T ss_pred             HHHEECCC---EEEEECCCC--CCHHHCCEEEEEEEEEEECCCHHHHCCEEEEEEEECCCCCCCCCCCEEECCCCCHHHH
T ss_conf             23103543---125435785--0011111012234554323621221000236775217888645752223588650488


Q ss_pred             ------------CCCCCCCEEEEEHHCCCC---CCCC--CCCCCCCCCCCCCCEE
Q ss_conf             ------------432332203310100111---1222--3310255445675226
Q gi|254780583|r   84 ------------SKIPGIDHGLSDGDTFDF---GSHP--IKIIATPGHTIGHICY  121 (256)
Q Consensus        84 ------------~~i~~~~~~l~dgd~i~i---g~~~--~~vi~tPGHT~g~i~~  121 (256)
T Consensus        87 eyt~fik~anP~lrfsfnvhPl~eG~rvflr~aGGfkryvqPfrtk-hv~~evsf  140 (277)
T TIGR02650        87 EYTEFIKKANPELRFSFNVHPLKEGERVFLRDAGGFKRYVQPFRTK-HVASEVSF  140 (277)
T ss_pred             HHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCE-EEEEEEEC
T ss_conf             8899986338663366531313468778984478720012530000-01000001