HHsearch alignment for GI: 254780583 and conserved domain: TIGR02650
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type; InterPro: IPR013470 All tRNA molecules are synthesised as long precursors with extra sequence at both the 5' and 3' ends, which undergo several processing steps to form the mature tRNA molecule. In many bacteria the tRNA precursors do not contain the CCA sequence which forms the 3' end of the mature tRNA and is essential for aminoacylation. In these organisms ribonucleotide Z cleaves the precursor to form a 3' end to which CCA is added. Proteins in this entry, by contrast are ribonuclease Z enzymes with unusual activity. Organisms containing these proteins include the CCA sequence in the tRNA precursor and ribonuclease Z cleaves the molecule immediately after this sequence producing a mature 3' end. The sequence of these proteins differs considerably from the majority of ribonuclease Z sequences..
Probab=94.45 E-value=0.015 Score=37.20 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=58.7
Q ss_pred EEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHC---------CCEEEECCCCC---
Q ss_conf 699998899849998699989999999985996439998589843300000111100---------01012000123---
Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF---------NCTIFGPLEES--- 83 (256)
Q Consensus 16 ~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~---------~~~v~~~~~~~--- 83 (256)
T Consensus 12 tWiyysPe---rilfdaGeG--vsttlGskvyafkyvflthGhvdhiaGlWGvvnirnnGmGdrekPldvfyP~Gnrave 86 (277)
T TIGR02650 12 TWIYYSPE---RILFDAGEG--VSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPKGNRAVE 86 (277)
T ss_pred HHHEECCC---EEEEECCCC--CCHHHCCEEEEEEEEEEECCCHHHHCCEEEEEEEECCCCCCCCCCCEEECCCCCHHHH
T ss_conf 23103543---125435785--0011111012234554323621221000236775217888645752223588650488
Q ss_pred ------------CCCCCCCEEEEEHHCCCC---CCCC--CCCCCCCCCCCCCCEE
Q ss_conf ------------432332203310100111---1222--3310255445675226
Q gi|254780583|r 84 ------------SKIPGIDHGLSDGDTFDF---GSHP--IKIIATPGHTIGHICY 121 (256)
Q Consensus 84 ------------~~i~~~~~~l~dgd~i~i---g~~~--~~vi~tPGHT~g~i~~ 121 (256)
T Consensus 87 eyt~fik~anP~lrfsfnvhPl~eG~rvflr~aGGfkryvqPfrtk-hv~~evsf 140 (277)
T TIGR02650 87 EYTEFIKKANPELRFSFNVHPLKEGERVFLRDAGGFKRYVQPFRTK-HVASEVSF 140 (277)
T ss_pred HHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCE-EEEEEEEC
T ss_conf 8899986338663366531313468778984478720012530000-01000001