HHsearch alignment for GI: 254780583 and conserved domain: TIGR03675

>TIGR03675 arCOG00543 arCOG01782 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=98.77  E-value=3.5e-09  Score=80.21  Aligned_cols=129  Identities=18%  Similarity=0.246  Sum_probs=79.1

Q ss_pred             CCEE-EEEEECC--CEEEEEEECCCCEEEEECCCC-----HHHHHHHHH--HCCC-CEEEEEECCCCHHHHCHHHHHHH-
Q ss_conf             6145-3011057--626999988998499986999-----899999999--8599-64399985898433000001111-
Q gi|254780583|r    3 SLNI-AISLYHD--NFCILIHNHKYRLTAAIDAPD-----TYIISKMLR--EKGW-FLTHIFNTHHHIDHTRANLNLKK-   70 (256)
Q Consensus         3 ~~~i-~ip~~~D--Ny~YlI~d~~t~~~viIDpgd-----~~~i~~~l~--~~~~-~i~~Il~TH~H~DHigg~~~l~~-   70 (256)
T Consensus       174 ~vrit~LG~~~eVGRSc~l~~~~~--~~illDcG~~~~~~~~~~~P~~d~~e~~~~~IDAVvlTHAHLDH~G~LP~L~k~  251 (630)
T TIGR03675       174 WVRVTALGGFREVGRSALLLSTPE--SRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKY  251 (630)
T ss_pred             EEEEEECCCCCCCCCEEEEEECCC--EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHC
T ss_conf             499983467670264589996398--179998888877777545886567779801185899833532125632188764


Q ss_pred             HCCCEEEECCCCCCC----------C-------C-----------CCCEEEEEHHCCCCC-CCCCCCCCCCCCCCCCCEE
Q ss_conf             000101200012343----------2-------3-----------322033101001111-2223310255445675226
Q gi|254780583|r   71 FFNCTIFGPLEESSK----------I-------P-----------GIDHGLSDGDTFDFG-SHPIKIIATPGHTIGHICY  121 (256)
Q Consensus        71 ~~~~~v~~~~~~~~~----------i-------~-----------~~~~~l~dgd~i~ig-~~~~~vi~tPGHT~g~i~~  121 (256)
T Consensus       252 Gf~GpIy~T~pT~dL~~llL~D~~ki~~~e~~~plYt~~dv~~~l~~~~~l~y~~~~~i~~~ik~tf~-~AGHILGSAmv  330 (630)
T TIGR03675       252 GYDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFY-NAGHILGSAIA  330 (630)
T ss_pred             CCCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCEECCCCCEEECCCCEEEEEE-CCCCCCEEEEE
T ss_conf             88898886545999999999989999870589999899999999844562489985971798499997-68861044799


Q ss_pred             EEC--CC--CCCCCCCE
Q ss_conf             861--46--54313770
Q gi|254780583|r  122 HFM--ND--HFLCVGDT  134 (256)
Q Consensus       122 ~~~--~~--~~lFtGDt  134 (256)
T Consensus       331 ~l~i~~g~~~ilfTGD~  347 (630)
T TIGR03675       331 HLHIGDGLYNIVYTGDF  347 (630)
T ss_pred             EEEECCCCEEEEEECCC
T ss_conf             99976896799995998