HHsearch results for GI: 254780583 and protein with PDBid: 3bk2_A
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A*
Probab=99.44 E-value=1.6e-13 Score=106.89 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=98.9
Q ss_pred CCCEE-EEEEECC---CEEEEEEECCCCEEEEECCCC----HH--------HHHHHHHHCCCCEEEEEECCCCHHHHCHH
Q ss_conf 86145-3011057---626999988998499986999----89--------99999998599643999858984330000
Q gi|254780583|r 2 TSLNI-AISLYHD---NFCILIHNHKYRLTAAIDAPD----TY--------IISKMLREKGWFLTHIFNTHHHIDHTRAN 65 (256)
Q Consensus 2 ~~~~i-~ip~~~D---Ny~YlI~d~~t~~~viIDpgd----~~--------~i~~~l~~~~~~i~~Il~TH~H~DHigg~ 65 (256)
..+.| |+.-... | +|++..+ +..++||.|- .+ +=..+++++.-++++|++||.|.||+|++
T Consensus 15 ~~i~i~pLGG~~EIG~n-~~~~e~~--~~~iliD~G~~f~~~~~~gid~iiPd~~~l~~~~~~i~ai~lTHaH~DH~Gal 91 (562)
T 3bk2_A 15 DHVEIIPLGGMGEIGKN-ITVFRFR--DEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGL 91 (562)
T ss_dssp CCEEEEEEESBSBSSCC-EEEEEET--TEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTH
T ss_pred CEEEEEECCCCCHHHHC-EEEEEEC--CEEEEEECCCCCCCCCCCCCCEEECCCHHHHHCCCCCEEEEECCCCHHHHCCH
T ss_conf 82899966888904516-7999999--95999958999897568897589369689873766725999799855653772
Q ss_pred HHHHH-----HCCCEEEECCCCCCCC---------CC---CCEEEEEHHCCCCCC-CCCCCCCCCCCCCCCCEEEEC--C
Q ss_conf 01111-----0001012000123432---------33---220331010011112-223310255445675226861--4
Q gi|254780583|r 66 LNLKK-----FFNCTIFGPLEESSKI---------PG---IDHGLSDGDTFDFGS-HPIKIIATPGHTIGHICYHFM--N 125 (256)
Q Consensus 66 ~~l~~-----~~~~~v~~~~~~~~~i---------~~---~~~~l~dgd~i~ig~-~~~~vi~tPGHT~g~i~~~~~--~ 125 (256)
+.|.. .+++|||+.+.....+ .. ....+..++.+.+|+ ++++++.+.+|.||+..++++ +
T Consensus 92 p~Ll~~~~~~~~~~PIY~T~~T~~Ll~~kl~e~~~~~~~~~~~~i~~~~~~~~g~~f~v~~~~v~hsipga~~~~i~t~~ 171 (562)
T 3bk2_A 92 PFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPI 171 (562)
T ss_dssp HHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEETT
T ss_pred HHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEECC
T ss_conf 87887521456885888799999999999997299855553147369965998211899988536777764699998299
Q ss_pred CCCCCCCCEEEEC
Q ss_conf 6543137704304
Q gi|254780583|r 126 DHFLCVGDTLFSL 138 (256)
Q Consensus 126 ~~~lFtGDtLF~~ 138 (256)
..++||||.-|.+
T Consensus 172 g~IlyTGDfr~~~ 184 (562)
T 3bk2_A 172 GTIVHTGDFKLDP 184 (562)
T ss_dssp EEEEECCSCCCCS
T ss_pred EEEEEEECCCCCC
T ss_conf 7899982555777