Query gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62] Match_columns 256 No_of_seqs 247 out of 4935 Neff 6.6 Searched_HMMs 23785 Date Tue May 31 20:06:39 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780583.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1xm8_A Glyoxalase II; structur 100.0 0 0 555.5 23.7 252 4-255 1-254 (254) 2 2qed_A Hydroxyacylglutathione 100.0 0 0 553.2 23.0 251 1-255 5-258 (258) 3 1qh5_A Glyoxalase II, protein 100.0 0 0 540.8 23.0 249 4-256 1-256 (260) 4 2p18_A Glyoxalase II; metallop 100.0 0 0 502.9 22.4 251 1-253 26-311 (311) 5 2gcu_A Putative hydroxyacylglu 100.0 0 0 386.4 12.2 213 13-227 14-239 (245) 6 2xf4_A Hydroxyacylglutathione 100.0 1.4E-45 0 315.5 13.3 187 1-224 1-209 (210) 7 2zwr_A Metallo-beta-lactamase 100.0 1.3E-38 5.5E-43 269.5 12.3 179 4-225 4-202 (207) 8 2vw8_A PA1000, PQSE; quinolone 100.0 2.4E-29 1E-33 209.4 15.2 191 13-205 24-257 (303) 9 2zo4_A Metallo-beta-lactamase 100.0 3.8E-29 1.6E-33 208.2 14.9 170 4-178 11-240 (317) 10 1jjt_A IMP-1 metallo beta-lact 100.0 1.3E-28 5.3E-33 204.8 12.4 165 16-183 35-209 (228) 11 1k07_A FEZ-1 beta-lactamase; m 100.0 1E-27 4.2E-32 198.9 14.7 155 15-172 26-216 (263) 12 1a7t_A Metallo-beta-lactamase; 100.0 9.4E-28 3.9E-32 199.1 12.9 154 16-172 39-207 (232) 13 2gmn_A Metallo-beta-lactamase; 100.0 6E-28 2.5E-32 200.4 11.5 154 16-172 37-223 (274) 14 3l6n_A Metallo-beta-lactamase; 99.9 1.4E-27 5.7E-32 198.1 12.0 170 16-199 33-217 (219) 15 1m2x_A Class B carbapenemase B 99.9 1.6E-26 6.6E-31 191.2 14.2 155 16-173 29-198 (223) 16 2whg_A VIM-4 metallo-beta-lact 99.9 1.3E-26 5.5E-31 191.7 12.1 155 13-172 38-210 (230) 17 1sml_A Protein (penicillinase) 99.9 8.8E-26 3.7E-30 186.4 12.4 184 16-203 40-258 (269) 18 2yz3_A Metallo-beta-lactamase; 99.9 8.7E-26 3.7E-30 186.4 11.1 152 16-172 71-241 (266) 19 3iog_A Beta-lactamase; hydrola 99.9 3.4E-25 1.4E-29 182.5 12.3 154 16-173 25-206 (227) 20 1mqo_A Beta-lactamase II; alph 99.9 2.5E-25 1.1E-29 183.4 10.3 155 14-172 42-211 (227) 21 2fhx_A SPM-1; metallo-beta-lac 99.9 6E-25 2.5E-29 181.0 12.0 155 16-173 32-223 (246) 22 3adr_A Putative uncharacterize 99.9 2.9E-26 1.2E-30 189.5 5.2 155 11-172 17-208 (261) 23 2p97_A Hypothetical protein; p 99.9 7.9E-25 3.3E-29 180.2 11.4 150 15-173 25-183 (201) 24 2q9u_A A-type flavoprotein; fl 99.9 4.1E-25 1.7E-29 182.0 8.7 157 14-175 42-234 (414) 25 2ohh_A Type A flavoprotein FPR 99.9 1.9E-24 8.2E-29 177.6 9.9 174 14-199 36-252 (404) 26 1ycg_A Nitric oxide reductase; 99.9 2.4E-24 1E-28 177.1 9.7 158 14-175 37-231 (398) 27 1vme_A Flavoprotein; TM0755, s 99.9 5E-24 2.1E-28 175.0 8.6 155 14-174 53-243 (410) 28 3dha_A N-acyl homoserine lacto 99.9 8.9E-24 3.7E-28 173.4 9.6 152 15-173 40-241 (254) 29 3hnn_A Putative diflavin flavo 99.9 5.1E-23 2.2E-27 168.4 10.3 177 14-203 44-255 (262) 30 2cfu_A SDSA1; SDS-hydrolase, l 99.9 4.3E-22 1.8E-26 162.4 14.8 206 14-225 124-403 (658) 31 1e5d_A Rubredoxin\:oxygen oxid 99.9 3.1E-23 1.3E-27 169.8 7.9 156 14-174 36-229 (402) 32 3esh_A Protein similar to meta 99.8 2.7E-21 1.1E-25 157.3 7.6 154 15-173 49-253 (280) 33 2r2d_A AGR_PTI_140P, Zn-depend 99.8 2.6E-20 1.1E-24 150.9 8.7 154 15-173 44-261 (276) 34 1p9e_A Methyl parathion hydrol 99.8 1.8E-20 7.7E-25 151.9 6.7 156 14-172 98-303 (331) 35 1ztc_A Hypothetical protein TM 99.8 1.1E-19 4.7E-24 146.8 10.7 148 16-172 37-212 (221) 36 3bk2_A RNAse J, metal dependen 99.4 1.6E-13 6.8E-18 106.9 6.9 134 2-138 15-184 (562) 37 2p4z_A Metal-dependent hydrola 99.4 3.5E-12 1.5E-16 98.3 11.3 64 16-81 35-102 (284) 38 2bib_A CBPE, teichoic acid pho 99.3 1.8E-11 7.4E-16 93.7 9.7 160 16-189 20-249 (547) 39 3af5_A Putative uncharacterize 99.3 1.7E-11 7.2E-16 93.8 8.4 130 3-136 188-370 (651) 40 2i7t_A Cleavage and polyadenyl 99.2 3E-12 1.3E-16 98.7 3.8 129 4-136 12-182 (459) 41 2az4_A Hypothetical protein EF 99.2 4.6E-12 1.9E-16 97.5 3.7 119 14-138 21-194 (429) 42 1zkp_A Hypothetical protein BA 99.2 4.8E-11 2E-15 90.9 7.0 117 16-137 45-183 (268) 43 3g1p_A Protein PHNP; C-P lyase 99.1 2.5E-10 1E-14 86.3 9.8 161 14-187 39-216 (258) 44 2xr1_A Cleavage and polyadenyl 99.1 2.6E-11 1.1E-15 92.6 2.4 132 3-137 183-359 (640) 45 2i7x_A Protein CFT2; polyadeny 99.0 2.8E-10 1.2E-14 86.0 6.2 117 15-134 16-180 (717) 46 3kl7_A Putative metal-dependen 98.8 3.1E-09 1.3E-13 79.1 3.6 120 11-138 35-167 (235) 47 3h3e_A Uncharacterized protein 98.7 5.8E-08 2.5E-12 70.9 8.0 51 15-71 33-84 (267) 48 2cbn_A Ribonuclease Z; phospho 98.7 4.7E-08 2E-12 71.5 7.5 66 15-82 21-98 (306) 49 3jxp_A Coenzyme PQQ synthesis 98.4 4.7E-07 2E-11 65.0 7.1 65 15-82 42-116 (321) 50 1y44_A Ribonuclease Z; zinc-de 98.3 2E-06 8.3E-11 61.0 7.8 67 13-81 18-95 (320) 51 2wyl_A L-ascorbate-6-phosphate 98.2 1.8E-06 7.8E-11 61.2 5.8 91 48-138 109-231 (360) 52 3bv6_A Metal-dependent hydrola 98.1 7.8E-07 3.3E-11 63.6 1.8 92 48-139 133-257 (379) 53 1vjn_A Zn-dependent hydrolase 98.0 4.3E-06 1.8E-10 58.8 4.6 102 11-137 18-127 (220) 54 3md7_A Beta-lactamase-like; ss 97.9 2.5E-05 1.1E-09 53.8 6.4 58 12-70 61-121 (293) 55 2e7y_A TRNAse Z; tRNA maturati 97.7 2.2E-05 9.4E-10 54.2 4.1 50 16-70 13-62 (280) 56 2gcu_A Putative hydroxyacylglu 87.3 0.15 6.5E-06 29.3 1.2 25 211-235 191-215 (245) 57 3olh_A MST, 3-mercaptopyruvate 78.9 2.4 0.0001 21.6 4.4 63 111-185 214-277 (302) 58 1rhs_A Sulfur-substituted rhod 72.7 3.6 0.00015 20.4 4.0 63 111-185 200-263 (296) 59 3aay_A Putative thiosulfate su 72.7 3.5 0.00015 20.5 3.9 61 111-183 186-247 (277) 60 1uar_A Rhodanese; sulfurtransf 61.7 7.4 0.00031 18.4 3.8 60 112-183 194-254 (285) 61 2ji4_A Phosphoribosyl pyrophos 60.1 6.5 0.00027 18.8 3.2 27 6-32 59-87 (379) 62 2elf_A Protein translation elo 53.8 2.1 9E-05 21.9 -0.1 10 39-48 104-113 (370) 63 3ijw_A Aminoglycoside N3-acety 48.5 14 0.00057 16.7 3.4 30 34-63 16-45 (268) 64 3h2y_A GTPase family protein; 46.8 14 0.00061 16.5 3.9 98 40-143 124-266 (368) 65 3dah_A Ribose-phosphate pyroph 46.1 15 0.00062 16.5 3.7 44 5-48 33-87 (319) 66 1kid_A Groel (HSP60 class); ch 44.2 2.3 9.6E-05 21.7 -1.2 87 102-204 96-182 (203) 67 3hzu_A Thiosulfate sulfurtrans 43.5 16 0.00068 16.2 4.0 59 112-183 222-280 (318) 68 2h06_A Ribose-phosphate pyroph 41.5 17 0.00072 16.0 3.0 27 6-32 30-58 (326) 69 1dku_A Protein (phosphoribosyl 39.7 18 0.00078 15.8 3.6 28 5-32 35-64 (317) 70 2ewc_A Conserved hypothetical 38.8 11 0.00047 17.2 1.7 12 129-140 19-30 (126) 71 2huo_A Inositol oxygenase; pro 37.6 6.6 0.00028 18.7 0.4 27 114-141 127-153 (289) 72 3k0t_A Endoribonuclease L-PSP, 37.5 16 0.00068 16.2 2.3 46 109-158 23-75 (143) 73 2nyg_A YOKD protein; PFAM02522 37.2 20 0.00085 15.6 3.4 30 34-63 14-43 (273) 74 2jku_A Propionyl-COA carboxyla 35.5 9.5 0.0004 17.7 0.9 82 56-137 2-92 (94) 75 3k12_A Uncharacterized protein 34.4 16 0.00068 16.2 1.9 13 38-50 46-58 (122) 76 1w96_A ACC, acetyl-coenzyme A 32.5 24 0.001 15.1 2.8 12 36-47 120-131 (554) 77 3gtz_A Putative translation in 31.2 20 0.00083 15.6 1.9 14 38-51 48-61 (124) 78 2ibn_A Inositol oxygenase; red 31.0 7.2 0.0003 18.5 -0.3 27 114-141 88-114 (250) 79 1e0c_A Rhodanese, sulfurtransf 30.6 26 0.0011 14.9 2.8 23 162-184 223-245 (271) 80 1okg_A Possible 3-mercaptopyru 30.2 26 0.0011 14.8 4.5 65 111-184 198-268 (373) 81 3lme_A Possible translation in 29.6 27 0.0011 14.8 2.5 12 128-139 22-33 (138) 82 3k3s_A Altronate hydrolase; st 28.5 16 0.00069 16.2 1.1 77 55-142 4-85 (105) 83 2nnz_A Hypothetical protein; b 28.3 9.4 0.0004 17.7 -0.1 52 115-166 93-147 (153) 84 3ec1_A YQEH GTPase; atnos1, at 27.6 16 0.00067 16.2 1.0 99 39-143 125-267 (369) 85 2c40_A Inosine-uridine preferr 27.6 29 0.0012 14.5 2.8 54 28-81 4-67 (312) 86 3igz_B Cofactor-independent ph 27.2 23 0.00097 15.2 1.7 26 55-80 135-161 (561) 87 2qtd_A Uncharacterized protein 26.6 30 0.0013 14.4 4.8 72 1-79 2-82 (105) 88 2kb3_A Oxoglutarate dehydrogen 26.3 14 0.0006 16.6 0.5 16 93-108 122-137 (143) 89 3glk_A Acetyl-COA carboxylase 26.2 31 0.0013 14.4 2.3 24 25-48 95-125 (540) 90 2qu8_A Putative nucleolar GTP- 25.4 21 0.0009 15.4 1.3 61 55-116 4-88 (228) 91 1sa3_A Type II restriction enz 24.9 32 0.0014 14.2 2.3 53 165-223 124-179 (262) 92 1zx8_A Hypothetical protein TM 23.5 33 0.0014 14.2 1.9 24 115-138 74-98 (136) 93 2bz1_A GTP cyclohydrolase II; 23.4 28 0.0012 14.7 1.5 68 101-173 15-93 (196) 94 3f0d_A 2-C-methyl-D-erythritol 22.4 20 0.00085 15.6 0.7 62 55-123 2-66 (183) 95 2h5e_A Peptide chain release f 22.2 19 0.00079 15.8 0.5 29 25-53 108-141 (529) 96 1vem_A Beta-amylase; beta-alph 21.4 38 0.0016 13.8 3.2 30 35-64 68-97 (516) 97 1x87_A Urocanase protein; stru 21.0 39 0.0016 13.7 3.4 26 36-61 61-95 (551) No 1 >1xm8_A Glyoxalase II; structural genomics, protein structure initiative, CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2 PDB: 2q42_A Probab=100.00 E-value=0 Score=555.52 Aligned_cols=252 Identities=40% Similarity=0.687 Sum_probs=244.2 Q ss_pred CEE-EEEEECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCC Q ss_conf 145-3011057626999988998499986999899999999859964399985898433000001111000101200012 Q gi|254780583|r 4 LNI-AISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEE 82 (256) Q Consensus 4 ~~i-~ip~~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~ 82 (256) |.| +||+|+|||+|||.|+.|++|++||||++++++++++++++++++|++||+|+||++|+.+|++.++++++++..+ T Consensus 1 M~i~~ip~l~dNy~Yli~d~~t~~~~vIDp~~~~~vl~~l~~~~~~l~~Il~TH~H~DH~~g~~~l~~~~~~~i~~~~~~ 80 (254) T 1xm8_A 1 MQIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMD 80 (254) T ss_dssp CEEEEEEETTTEEEEEEECTTTCCEEEECCSSHHHHHHHHHHHTCCCCEEECSSCCHHHHTTHHHHHHHHCCEEEEEGGG T ss_pred CEEEEEEEECCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCCEEEEECCC T ss_conf 97899743425789999989999899998978299999999779916899944788655266899988639838973332 Q ss_pred CCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCC Q ss_conf 34323322033101001111222331025544567522686146543137704304613446663156776654420134 Q gi|254780583|r 83 SSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFS 162 (256) Q Consensus 83 ~~~i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp 162 (256) ...++++++.++||+.+++|+.+++|++|||||+||+|||++++++||||||||.+||||+|+|++++|++||+||++|| T Consensus 81 ~~~~~~~~~~~~dgd~i~~g~~~~~vi~tPGHT~ghv~~~~~~~~~lftGDtlf~~g~Gr~~~g~~~~~~~Sl~kl~~Lp 160 (254) T 1xm8_A 81 KDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLP 160 (254) T ss_dssp GGGSTTEEEEECTTCEEEETTEEEEEEECCSSSSSCEEEEEGGGTEEEEETTEETTEECCCSSSCHHHHHHHHHHHHTSC T ss_pred CCCCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEECCCCEEEECCEEEECCCCCCCCCCHHHHHHHHHHHHHCC T ss_conf 24587898783489736788878999972798877568997575378856888745888889999999999999997089 Q ss_pred CCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCC-CCH Q ss_conf 4650201665204588987750234478999999999888578986678789998728224678989999738899-898 Q gi|254780583|r 163 DKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMEN-ASN 241 (256) Q Consensus 163 ~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~~~~~~~~~~~~-~~~ 241 (256) ++|+||||||||.+|++|+.+++|+|+.++++.++++++|+++.||+||||++||++|||||++++.+++.++... .++ T Consensus 161 ~~t~v~pgH~y~~~n~~f~~~~~~~n~~~~~~~~~~~~~~~~~~~tvpstl~~E~~~Npflr~~~~~~~~~l~~~~~~~~ 240 (254) T 1xm8_A 161 DDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADE 240 (254) T ss_dssp TTCEEEESBCCHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTCCCCCEEHHHHHHHCGGGCTTCHHHHHHHTCCTTCCH T ss_pred CCCEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCH T ss_conf 65657225655433301254407876889999999999987799957753899987495467898899998589989998 Q ss_pred HHHHHHHHHHHHCC Q ss_conf 99999999867328 Q gi|254780583|r 242 LAVFTELRIRKNQS 255 (256) Q Consensus 242 ~~~f~~lR~~kd~f 255 (256) .++|.+||++||+| T Consensus 241 ~~~f~~LR~~kd~f 254 (254) T 1xm8_A 241 AEALGIIRKAKDDF 254 (254) T ss_dssp HHHHHHHHHHHHTC T ss_pred HHHHHHHHHHHCCC T ss_conf 99999999846689 No 2 >2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily; 1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2 Probab=100.00 E-value=0 Score=553.20 Aligned_cols=251 Identities=36% Similarity=0.567 Sum_probs=232.8 Q ss_pred CCCCEE-EEEEECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEEC Q ss_conf 986145-3011057626999988998499986999899999999859964399985898433000001111000101200 Q gi|254780583|r 1 MTSLNI-AISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGP 79 (256) Q Consensus 1 m~~~~i-~ip~~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~ 79 (256) |..|+| +||+|+|||+|||.++ +++|++||||++++++++++++++++++|++||+|+||++|+.++++.++++++.+ T Consensus 5 ~~~~~i~~iP~~~DNy~Yli~~~-~~~avvIDPg~~~~il~~l~~~~~~l~~Il~TH~H~DHi~g~~~l~~~~~~~~~~~ 83 (258) T 2qed_A 5 IGSMNLNSIPAFQDNYIWVLTND-EGRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFPQMTVYG 83 (258) T ss_dssp --CCEEEEEEETTTEEEEEEECT-TSEEEEECCSCHHHHHHHHHHHTCEEEEEECCSCCHHHHTTHHHHHHHCTTCEEEE T ss_pred CCCCEEEEEEEECCEEEEEEEEC-CCEEEEECCCCCHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHCCEEEEC T ss_conf 65777999600437589999938-97099986987599999999769905799937999876553355444320214521 Q ss_pred CCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHH Q ss_conf 01234323322033101001111222331025544567522686146543137704304613446663156776654420 Q gi|254780583|r 80 LEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIK 159 (256) Q Consensus 80 ~~~~~~i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~ 159 (256) .. ....+..++.++|||+|.+|+.+++|+||||||+||+||++ ++.||||||||+|||||+|+|++++||+||+||+ T Consensus 84 ~~-~~~~~~~~~~l~dgd~i~iG~~~~~vihTPGHT~g~v~~~~--~~~lFtGDtLF~gg~Gr~~~g~~~~m~~SL~kl~ 160 (258) T 2qed_A 84 PA-ETQDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYFS--RPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKIN 160 (258) T ss_dssp CG-GGGGGTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEE--TTEEEEETTEETTEECCCSSSCHHHHHHHHHHHH T ss_pred CC-CCCCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCEEEEE--CCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 54-33345541464058678768845799967899988667873--2405607813068878889989999999999997 Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCC- Q ss_conf 1344650201665204588987750234478999999999888578986678789998728224678989999738899- Q gi|254780583|r 160 SFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMEN- 238 (256) Q Consensus 160 ~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~~~~~~~~~~~~- 238 (256) +||++|+||||||||.+|++||++++|+|+.+++++++++++|+++.||+||||++||++|||||++++++++.++.+. T Consensus 161 ~L~~~t~vypgH~y~~~nl~f~~~~~p~n~~l~~~~~~~~~~~~~~~~t~Pstl~~Ek~~NpflR~~~~~~~~~~~~~~~ 240 (258) T 2qed_A 161 SLPDDTLICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETI 240 (258) T ss_dssp TSCTTCEEEESBCCHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHTTCCCCCEEHHHHHHHCGGGCTTCHHHHHHHHTTCC T ss_pred CCCCCCEECCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCHHHCCCCHHHHHHHHHCCC T ss_conf 19931243467745545667798728886999999999999997599957723999976598547899899999863147 Q ss_pred -CCHHHHHHHHHHHHHCC Q ss_conf -89899999999867328 Q gi|254780583|r 239 -ASNLAVFTELRIRKNQS 255 (256) Q Consensus 239 -~~~~~~f~~lR~~kd~f 255 (256) .++.++|++||+|||+| T Consensus 241 ~~~~~~~f~~lR~~kd~f 258 (258) T 2qed_A 241 LQQPEARFAWLRSKKDTF 258 (258) T ss_dssp CCSHHHHHHHHHHHHHHC T ss_pred CCCHHHHHHHHHHHHCCC T ss_conf 899899999999855689 No 3 >1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase); metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens} SCOP: d.157.1.2 PDB: 1qh3_A* Probab=100.00 E-value=0 Score=540.81 Aligned_cols=249 Identities=30% Similarity=0.481 Sum_probs=233.3 Q ss_pred CEE-EEEEECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCC Q ss_conf 145-3011057626999988998499986999899999999859964399985898433000001111000101200012 Q gi|254780583|r 4 LNI-AISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEE 82 (256) Q Consensus 4 ~~i-~ip~~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~ 82 (256) |+| +||+|+|||+|||.|+.|++|+|||||+++++++++++++++|++||+||+|+||++|+.+|++.+++.++.+... T Consensus 1 m~i~~ip~l~DNysYli~d~~t~~a~vIDP~~~~~i~~~~~~~~l~l~~Il~TH~H~DHi~g~~~l~~~~~~~~~~~~~~ 80 (260) T 1qh5_A 1 MKVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLESGLKVYGGDD 80 (260) T ss_dssp CEEEEEEETTTEEEEEEEETTTTEEEEESCSSHHHHHHHHHHHTCEEEEEECCCSSHHHHTTHHHHHHHSTTCEEEESCT T ss_pred CEEEEEEEECCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHCCCEEEEEEECCCCHHHHCCHHHHHCCCCCCEECCCCC T ss_conf 95789410342689999989999899990898899999999779968899947898567510443101157724413334 Q ss_pred CCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC-----CCCCCCCEEEECCCCCCCCCCHHHHHHHH-H Q ss_conf 34323322033101001111222331025544567522686146-----54313770430461344666315677665-4 Q gi|254780583|r 83 SSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND-----HFLCVGDTLFSLGCGRIFEDSYAEMFESL-E 156 (256) Q Consensus 83 ~~~i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~-----~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl-~ 156 (256) ..+..+..+.+|+.+.+|+.+++|+||||||+||+||+++++ +++|||||||+|||||+++|++++|++|+ + T Consensus 81 --~~~~~~~~~~~gd~~~~g~~~~~vi~TPGHT~gsv~~~~~~~~~~~~~~lFtGDtLF~gg~Gr~~~g~~~~l~~si~~ 158 (260) T 1qh5_A 81 --RIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLE 158 (260) T ss_dssp --TSTTCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEECSSSSSCCEEEEETTEETTEECCCTTCCHHHHHHHHHT T ss_pred --CCCCCCCCCCCCCEEEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCEEEECCCEECCCCCCCCCCCHHHHHHHHHH T ss_conf --565332236677389989999999984588888578998478887565178557443687668889998999899988 Q ss_pred HHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHCCC Q ss_conf 42013446502016652045889877502344789999999998885789866787899987282246789899997388 Q gi|254780583|r 157 KIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNM 236 (256) Q Consensus 157 kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~~~~~~~~~~ 236 (256) +|.+||++|+|||||||+.+|++|+.+++|+|+.++.++.+++.+++++.||+||||++||++|||||++++.++++++. T Consensus 159 ~l~~Lpd~t~vypGH~y~~~n~~f~~~~~~~n~~l~~~~~~~~~~~~~~~~tvpstl~~E~~~NPflr~~~~~~~~~~~~ 238 (260) T 1qh5_A 159 VLGRLPPDTRVYCGHEYTINNLKFARHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVREKTVQQHAGE 238 (260) T ss_dssp TTTTSCTTCEEEESBCCHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCCCCCEEHHHHHHHCTTTTTTSHHHHHHHTC T ss_pred HHHCCCCCCEEECCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHCCCCCCCCHHHHHHHCC T ss_conf 98529976379526667655467798857468999999999998987799957720999976493014799899987379 Q ss_pred CCCCHHHHHHHHHHHHHCCC Q ss_conf 99898999999998673289 Q gi|254780583|r 237 ENASNLAVFTELRIRKNQSK 256 (256) Q Consensus 237 ~~~~~~~~f~~lR~~kd~f~ 256 (256) .+++++|.+||++||+|| T Consensus 239 --~~~~~~f~~lR~~kd~f~ 256 (260) T 1qh5_A 239 --TDPVTTMRAVRREKDQFK 256 (260) T ss_dssp --SSHHHHHHHHHHHHHHCC T ss_pred --CCHHHHHHHHHHHHHCCC T ss_conf --987999999999861478 No 4 >2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain, hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB: 2p1e_A* Probab=100.00 E-value=0 Score=502.89 Aligned_cols=251 Identities=27% Similarity=0.424 Sum_probs=226.6 Q ss_pred CCCCEE-EEEEECCCEEEEEEECCCCEEEEECCC-CHHHHHHHHHHC---------CCCEEEEEECCCCHHHHCHHHHHH Q ss_conf 986145-301105762699998899849998699-989999999985---------996439998589843300000111 Q gi|254780583|r 1 MTSLNI-AISLYHDNFCILIHNHKYRLTAAIDAP-DTYIISKMLREK---------GWFLTHIFNTHHHIDHTRANLNLK 69 (256) Q Consensus 1 m~~~~i-~ip~~~DNy~YlI~d~~t~~~viIDpg-d~~~i~~~l~~~---------~~~i~~Il~TH~H~DHigg~~~l~ 69 (256) |+.+.| +||+|+|||+|||.|+.|++|++|||| +++++++++++. +++|++||+||+|+||++|+.+|+ T Consensus 26 ~~~~~v~~iP~l~DNysYLI~d~~t~ea~vIDPg~d~~~il~~i~~~~~~~~~~~~~l~l~~ILlTH~H~DHigG~~~L~ 105 (311) T 2p18_A 26 GSAFSVTVVPTLKDNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLK 105 (311) T ss_dssp TTTEEEEEEEETTTEEEEEEEETTTTEEEEESCCSCCHHHHHHHHHTC--------CCEEEEEEESSSSHHHHTTHHHHH T ss_pred CCCEEEEEEEECCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHH T ss_conf 56208999500064289999989999799991898618999999998875311236976879982788872252499999 Q ss_pred HHCCCEE-----EECCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCC------CCCCCCEEEEC Q ss_conf 1000101-----200012343233220331010011112223310255445675226861465------43137704304 Q gi|254780583|r 70 KFFNCTI-----FGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDH------FLCVGDTLFSL 138 (256) Q Consensus 70 ~~~~~~v-----~~~~~~~~~i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~------~lFtGDtLF~~ 138 (256) +.+++.. ..........+.+++.+++|+.+.+|+.+++|++|||||+||+||++++++ ++|||||||.+ T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dgd~i~~G~~~l~vi~tPGHT~ghv~~~~~~~~~~~~~~~lFtGDtlF~g 185 (311) T 2p18_A 106 AELEAMNSTVPVVVVGGANDSIPAVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIA 185 (311) T ss_dssp HHHHSCC--CCCEEEEEGGGTCTTCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEECTTCGGGCEEEEEETTEETT T ss_pred HHHCCCCCCCCEEEECCHHCCCCCCCEEECCCCEEEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEECCEECCC T ss_conf 98478532231034113110687784662489705799999999864455776369998467777646679989995247 Q ss_pred CCCCCCCCCHHHHHHHHHHH--------HCCCCCCEEECCCCCHHHHHHHHHHCCCCCHH-----HHHHHHHHHHHHHCC Q ss_conf 61344666315677665442--------01344650201665204588987750234478-----999999999888578 Q gi|254780583|r 139 GCGRIFEDSYAEMFESLEKI--------KSFSDKTHIYFGHEYTENNAYFALSCDPHNLE-----LQKYCSKVKSMRSQN 205 (256) Q Consensus 139 g~Gr~~~G~~~~l~~Sl~kl--------~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~-----~~~~~~~~~~~~~~~ 205 (256) ||||+++|++.+|++||+|| .+||++|+||||||||.+||+||++++|+|+. +..+.+++.+.+.++ T Consensus 186 g~Gr~~~g~~~~~~~SL~kl~~~~~~~l~~Lpd~t~IyPGH~y~~~nl~f~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 265 (311) T 2p18_A 186 GIGAFFEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFPGHEYTSGFMTFSEKTFPDRASDDLAFIQAQRAKYAAAVKTG 265 (311) T ss_dssp EECCCTTSCHHHHHHHHHHHHTTTGGGTTGGGGGEEEEESBCCHHHHHHHHHHHCSCTTSHHHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 77789997999999999999986541445799985999187232466667765078743357889999999999998769 Q ss_pred CCCCCCCHHHHHHHCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHHHH Q ss_conf 986678789998728224678989999738899898999999998673 Q gi|254780583|r 206 LYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFTELRIRKN 253 (256) Q Consensus 206 ~~tvPstl~~Ek~~NPflr~~~~~~~~~~~~~~~~~~~~f~~lR~~kd 253 (256) .||+||||++||++|||||+++++++++++..+ +.+.|..||..|| T Consensus 266 ~pt~Pstl~~E~~~Npflr~~~~~~~~~l~~~~--~~~~~~~~~~~~~ 311 (311) T 2p18_A 266 DPSVPSSLAEEKRQNLFLRVADPAFVAKMNQGN--AHALMMYLYNACD 311 (311) T ss_dssp CCCCCEEHHHHHHHCTTGGGGSHHHHHHHTSSS--HHHHHHHHHHC-- T ss_pred CCCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCC--CHHHHHHHHHCCC T ss_conf 998897599998749162789989999877999--4799999986369 No 5 >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Probab=100.00 E-value=0 Score=386.36 Aligned_cols=213 Identities=26% Similarity=0.299 Sum_probs=193.6 Q ss_pred CCEEEEEEEC--CCCEEEEECCCC--HHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCCCC Q ss_conf 7626999988--998499986999--899999999859964399985898433000001111000101200012343233 Q gi|254780583|r 13 DNFCILIHNH--KYRLTAAIDAPD--TYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPG 88 (256) Q Consensus 13 DNy~YlI~d~--~t~~~viIDpgd--~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i~~ 88 (256) .||+|||.|. .+++|+|||||+ ++.++++++++++++++|++||+|+||++|+.+|++++++.++..... .... T Consensus 14 ~~~sYli~d~~~~t~eaivIDP~~~~~~~~~~~i~~~~~~i~~Il~TH~H~DH~~g~~~l~~~~~~~~~~~~~~--~~~~ 91 (245) T 2gcu_A 14 STFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKA--SGSK 91 (245) T ss_dssp TEEEEEEEETTSTTCEEEEESCBGGGHHHHHHHHHHHTCEEEEEECSSCCSSSCBSHHHHHHHSTTCEEEEEGG--GCCC T ss_pred CEEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCC--CCCC T ss_conf 30899998588899989999299875899999999869967899835897688713999997641541000124--6766 Q ss_pred CCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECC------CCCCCCCCEEEECCCCC--CCCCCHHHHHHHHH-HHH Q ss_conf 2203310100111122233102554456752268614------65431377043046134--46663156776654-420 Q gi|254780583|r 89 IDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN------DHFLCVGDTLFSLGCGR--IFEDSYAEMFESLE-KIK 159 (256) Q Consensus 89 ~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~------~~~lFtGDtLF~~g~Gr--~~~G~~~~l~~Sl~-kl~ 159 (256) .++.+++|+.+.+|+.++++++|||||+||+||++.+ .++||||||||.||||| +++|++++|++||+ +|. T Consensus 92 ~d~~~~dgd~~~iG~~~l~vi~TPGHT~gsv~~~~~d~~~~~~~~~lFtGDtLF~g~~Gr~d~~~g~~~~l~~sl~~~l~ 171 (245) T 2gcu_A 92 ADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQLYESVHSQIF 171 (245) T ss_dssp CSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEECCSTTSCSSCEEEEETTSBTTBCCCCSSTTCCHHHHHHHHHHHTT T ss_pred CCEEECCCCCCEECCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEECCCEECCCCCCCCCCCCCHHHHHHHHHHHHH T ss_conf 75661488721489899999977898863389994366777766379954760577563678898869999999986754 Q ss_pred CCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCC Q ss_conf 13446502016652045889877502344789999999998885789866787899987282246789 Q gi|254780583|r 160 SFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIEN 227 (256) Q Consensus 160 ~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPflr~~~ 227 (256) +||++|+|||||+|+.+|+.|+....+.|+.+++..+++++.+.++.|++||+|+.|+++|+|+|..+ T Consensus 172 ~Lp~~t~i~pGH~~~~~~~tt~~~e~~~Np~l~~~~~~~~~~~~~~~~~~P~~l~~~~~~N~~~~~~~ 239 (245) T 2gcu_A 172 TLPKDTLIYPAHDYKGFEVSTVGEEMQHNPRLTKDKETFKTIMSNLNLSYPKMIDVAVPANMVCGLQD 239 (245) T ss_dssp TSCTTCEEEESBCSSSCCCEEHHHHHHHCTTTTSCHHHHHHHHHTCCCCCCTTHHHHHHHHHTTTCCS T ss_pred CCCCCEEEECCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC T ss_conf 59951799778788744443367565059999867999999997599698977899999788679999 No 6 >2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella enterica} Probab=100.00 E-value=1.4e-45 Score=315.50 Aligned_cols=187 Identities=29% Similarity=0.499 Sum_probs=168.5 Q ss_pred CCCCEEEEEEECCCEEEEEEECCCCEEEEECCC-CHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEEC Q ss_conf 986145301105762699998899849998699-9899999999859964399985898433000001111000101200 Q gi|254780583|r 1 MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAP-DTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGP 79 (256) Q Consensus 1 m~~~~i~ip~~~DNy~YlI~d~~t~~~viIDpg-d~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~ 79 (256) |..-.||++.|++| +|||.+++++++++|||| +++.+++++++.+++|++|++||.|+||+||+..|+++++++++++ T Consensus 1 m~~~~i~~~~~~~N-~yli~~~~~~~~ilID~G~~~~~i~~~l~~~~~~i~~Vi~TH~H~DH~gg~~~l~~~~~~~i~~~ 79 (210) T 2xf4_A 1 MNYRIIPVTAFSQN-CSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGP 79 (210) T ss_dssp CEEEEEEETTTTEE-EEEEECTTTCEEEEECCCSCHHHHHHHHHHHTCEEEEEECSCSCHHHHTTHHHHHHHHTCCEECC T ss_pred CCEEEEECCCHHCE-EEEEEECCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCEEEE T ss_conf 94399987844668-99999899998999979808999999999779934899978799855351899877509847850 Q ss_pred CCCCCC------------------CCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCC Q ss_conf 012343------------------23322033101001111222331025544567522686146543137704304613 Q gi|254780583|r 80 LEESSK------------------IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCG 141 (256) Q Consensus 80 ~~~~~~------------------i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~G 141 (256) ...... ....+..+++|+.+.+|+.++++++|||||+||+|||+++.+++||||++|.+|+| T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~g~~~~~~i~tPGHT~g~~~~~~~~~~~l~~GD~~~~~~~~ 159 (210) T 2xf4_A 80 EKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVG 159 (210) T ss_dssp CGGGHHHHHTHHHHHHHTTCCCCCCCCCSBCCCTTCEEEETTEEEEEEECCSSSTTCEEEEETTTTEEEEETSEETTEEC T ss_pred CCHHHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCCEECCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEECCCCC T ss_conf 10456652042123211033345567785893168742369989999992699998689997788842148886379704 Q ss_pred C--CCCCCHHHHHHHHH-HHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 4--46663156776654-42013446502016652045889877502344789999999998885789866787899987 Q gi|254780583|r 142 R--IFEDSYAEMFESLE-KIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKK 218 (256) Q Consensus 142 r--~~~G~~~~l~~Sl~-kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~ 218 (256) + +++|+.+++++||+ +|.+|+++++|||||.+ +||+++||+ T Consensus 160 ~~~~~~~d~~~~~~sl~~~l~~l~~~~~v~PGHG~------------------------------------~st~~~e~~ 203 (210) T 2xf4_A 160 RSDFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHGP------------------------------------LSTLGYERL 203 (210) T ss_dssp CCCSTTCCHHHHHHHHHHHTGGGCTTCEEEESSSC------------------------------------CEEHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCC------------------------------------CCCHHHHHH T ss_conf 76678899999999999999708998399899998------------------------------------654999987 Q ss_pred HCCCCC Q ss_conf 282246 Q gi|254780583|r 219 VNPFLR 224 (256) Q Consensus 219 ~NPflr 224 (256) +||||| T Consensus 204 ~N~~~~ 209 (210) T 2xf4_A 204 HNPFLQ 209 (210) T ss_dssp HCTTC- T ss_pred HCHHHC T ss_conf 584524 No 7 >2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A {Thermus thermophilus} PDB: 2zzi_A Probab=100.00 E-value=1.3e-38 Score=269.47 Aligned_cols=179 Identities=22% Similarity=0.336 Sum_probs=149.6 Q ss_pred CEEEEEEECCCEEEEEEECCCCEEEEECCC-CHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCC Q ss_conf 145301105762699998899849998699-9899999999859964399985898433000001111000101200012 Q gi|254780583|r 4 LNIAISLYHDNFCILIHNHKYRLTAAIDAP-DTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEE 82 (256) Q Consensus 4 ~~i~ip~~~DNy~YlI~d~~t~~~viIDpg-d~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~ 82 (256) ..|++.-++.| +|||.++ +.+++|||| +++.+++++++.+.++++|++||.|+||++|+..|++.++++++.+..+ T Consensus 4 ~~~~~Gp~~~N-~ylI~~~--~~~ilID~G~~~~~~~~~l~~~~~~~~~vi~TH~H~DH~~g~~~l~~~~~~~~~~~~~~ 80 (207) T 2zwr_A 4 FPVTLGPLQEN-AYLVETG--EGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEALDLPVYLHPLD 80 (207) T ss_dssp EEEEETTTTEE-EEEEEET--TEEEEECCCSCHHHHHHHHHHHTCCCSCEECSCCCGGGTTTHHHHHHHHCCCEEECGGG T ss_pred EEEEECCHHCE-EEEEEEC--CEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHCCHHHHHHHHCCCEEECCCC T ss_conf 99970881188-9999989--98999949869999999999879972499979997667521999999869948961332 Q ss_pred CCCCC-----------------CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCC--C Q ss_conf 34323-----------------3220331010011112223310255445675226861465431377043046134--4 Q gi|254780583|r 83 SSKIP-----------------GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR--I 143 (256) Q Consensus 83 ~~~i~-----------------~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr--~ 143 (256) ..... .....+++|+.+ ..++++++||||+||+|||+++.++||+||++|.+++|+ + T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~vi~~PGHt~g~~~~~~~~~~~lf~GD~~~~~~~~~~~~ 156 (207) T 2zwr_A 81 LPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRL----FGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDL 156 (207) T ss_dssp HHHHHTHHHHHHHTTCCCCCCCSCCEECCTTCEE----TTEEEEECCSSSTTCEEEEETTTTEEEEETSEETTEECCSSS T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCEE----EEEEEECCCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCC T ss_conf 2000362022101364323675430002245157----779983248878784799987789888635703688456567 Q ss_pred CCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC Q ss_conf 66631567766544201344650201665204588987750234478999999999888578986678789998728224 Q gi|254780583|r 144 FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFL 223 (256) Q Consensus 144 ~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~Ek~~NPfl 223 (256) ++++.+++++||+||++|+++++|||||.+ |||+|.||+.|||| T Consensus 157 ~~~d~~~~~~sl~kl~~l~~~~~i~PGHG~------------------------------------~tt~g~e~~~n~~l 200 (207) T 2zwr_A 157 PGADPKALFASLKRLLSLPPETRVHPGHGP------------------------------------GTTLGLEARTNPFL 200 (207) T ss_dssp TTCCHHHHHHHHHHHTTSCTTCEEEESBSC------------------------------------CEEHHHHHHHCTTC T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECCCCC------------------------------------CCCHHHHHHHCCCC T ss_conf 788999999999999758998699999998------------------------------------64289998549023 Q ss_pred CC Q ss_conf 67 Q gi|254780583|r 224 RI 225 (256) Q Consensus 224 r~ 225 (256) |. T Consensus 201 ~~ 202 (207) T 2zwr_A 201 TG 202 (207) T ss_dssp -- T ss_pred CC T ss_conf 84 No 8 >2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein, SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A 2q0i_A 3dh8_A* Probab=99.97 E-value=2.4e-29 Score=209.41 Aligned_cols=191 Identities=18% Similarity=0.191 Sum_probs=140.2 Q ss_pred CCEEEEEEECCCCEEEEECCC---CHHHHHHHHHHCCC---CEEEEEECCCCHHHHCHHHHHHHH-CCCEEEECCCCCCC Q ss_conf 762699998899849998699---98999999998599---643999858984330000011110-00101200012343 Q gi|254780583|r 13 DNFCILIHNHKYRLTAAIDAP---DTYIISKMLREKGW---FLTHIFNTHHHIDHTRANLNLKKF-FNCTIFGPLEESSK 85 (256) Q Consensus 13 DNy~YlI~d~~t~~~viIDpg---d~~~i~~~l~~~~~---~i~~Il~TH~H~DHigg~~~l~~~-~~~~v~~~~~~~~~ 85 (256) -| +|+|.+.+ +.+++||+| +.+.+.+.+.+.++ +|++|++||.|+||+||+..|++. ++++||++..+... T Consensus 24 ~~-~yll~~g~-~~~~lIDtG~~~~~~~~~~~l~~~~~~~~~I~~ii~TH~H~DH~gg~~~l~~~~p~~~v~~~~~~~~~ 101 (303) T 2vw8_A 24 VP-VFLLRLGE-ASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQA 101 (303) T ss_dssp SC-EEEEEEET-TEEEEECCCCGGGHHHHHHHHHHHCSCGGGEEEEECCCCSTTTTTTHHHHGGGCTTCEEEEEHHHHHH T ss_pred CE-EEEEEECC-CCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCEEEECCCCCCCCCCHHHHHHCCCCCEEEECHHHHHH T ss_conf 27-99999799-86899959898529999999998289824279899590998650863455421678669944889998 Q ss_pred C------------------------------CCCCEEEEEHHCCCCCC-CCCCCCCCCCCCCCCCEEEECCCCCCCCCCE Q ss_conf 2------------------------------33220331010011112-2233102554456752268614654313770 Q gi|254780583|r 86 I------------------------------PGIDHGLSDGDTFDFGS-HPIKIIATPGHTIGHICYHFMNDHFLCVGDT 134 (256) Q Consensus 86 i------------------------------~~~~~~l~dgd~i~ig~-~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDt 134 (256) + ...+..+.+|+.+++|+ ..++++++||||+||+|+|+++.++|||||+ T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~lg~~~~~~~i~~PGHt~g~~~~~~~~~~~lf~GD~ 181 (303) T 2vw8_A 102 WKSESAVRVVERLNRQLLRAEQRLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDA 181 (303) T ss_dssp TTCHHHHHHHHHHHHHTCCTTCCCCCCCCGGGSCEEEECTTCEEEEETTEEEEEEECTTSSTTCEEEEETTTTEEEEETT T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEEECCCEEEECCCCCCCCCCCCCEEECCCCEEEECCC T ss_conf 73630134577777654322102455555666785694799989857822673266799699875637179999998283 Q ss_pred EEE--CCCCC---CCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC Q ss_conf 430--46134---466631567766544201344650201665204588987750234478999999999888578 Q gi|254780583|r 135 LFS--LGCGR---IFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQN 205 (256) Q Consensus 135 LF~--~g~Gr---~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~ 205 (256) ++. ...|+ .+.++.+++.+||+||.+|++++.|+|||.....+-..+..++..-....+....+...+..+ T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~sl~rl~~l~~~~~i~PgHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (303) T 2vw8_A 182 LGEFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQLIPGHGGLLRGRLAADGAESAYTECLRLCRRLLWRQSMG 257 (303) T ss_dssp TCEECTTTCSEECCCSSCHHHHHHHHHHHHTSSCCSEEEESSSCEEEHHHHHTHHHHHHHHHHHHHHHHHHHHHTT T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC T ss_conf 4777889776688999779999999999976899989999999733898999999999999999999999986578 No 9 >2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus thermophilus HB8} Probab=99.96 E-value=3.8e-29 Score=208.19 Aligned_cols=170 Identities=24% Similarity=0.337 Sum_probs=131.4 Q ss_pred CEEEEEEECC--CEEEEEEECCCCEEEEECCCC-H----HHHHHHHHHCCC---CEEEEEECCCCHHHHCHHHHHHHHCC Q ss_conf 1453011057--626999988998499986999-8----999999998599---64399985898433000001111000 Q gi|254780583|r 4 LNIAISLYHD--NFCILIHNHKYRLTAAIDAPD-T----YIISKMLREKGW---FLTHIFNTHHHIDHTRANLNLKKFFN 73 (256) Q Consensus 4 ~~i~ip~~~D--Ny~YlI~d~~t~~~viIDpgd-~----~~i~~~l~~~~~---~i~~Il~TH~H~DHigg~~~l~~~~~ 73 (256) +.+|+|.--+ | +|+|.++ +.+++||+|- . +.+.+.+++.++ +|++|++||.|+||+||+..+++ .+ T Consensus 11 i~~p~p~~~~~vN-~yli~~~--~~~vlIDtG~~~~~~~~~l~~~l~~~g~~~~~I~~Vi~TH~H~DH~Gg~~~l~~-~g 86 (317) T 2zo4_A 11 LPVPIPYPLKTVN-LYLLQGA--GEVALVDTALGTRAARGALELHLAELGLCFQDVKTILLTHHHPDHYGLSGFFEG-LG 86 (317) T ss_dssp EEEECSSTTCEEE-EEEEEET--TEEEEECCCCSSHHHHHHHHHHHHHTTCCGGGCCEEEESCCSHHHHTTHHHHHH-TT T ss_pred EECCCCCCCCCEE-EEEEEEC--CEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCHHHHHHH-CC T ss_conf 9588999988679-9999989--989999899997789999999999749997772499979988222221999974-59 Q ss_pred CEEEECCCCCCCC--------------------------------------------CCCCEEEEEHHCCCCCCCCCCCC Q ss_conf 1012000123432--------------------------------------------33220331010011112223310 Q gi|254780583|r 74 CTIFGPLEESSKI--------------------------------------------PGIDHGLSDGDTFDFGSHPIKII 109 (256) Q Consensus 74 ~~v~~~~~~~~~i--------------------------------------------~~~~~~l~dgd~i~ig~~~~~vi 109 (256) ++||++..+...+ +..+..+.+|+.+.+|+.+++++ T Consensus 87 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~gg~~~~vi 166 (317) T 2zo4_A 87 ARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVL 166 (317) T ss_dssp CEEEEEGGGTTTHHHHHHCTTTSHHHHHHHHHHTTCCC-------CHHHHHHTTCCCCSSCEEECTTCEEEETTEEEEEE T ss_pred CCEECCHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEECCCCEEECC T ss_conf 98313788888887654050556788887654217833333334432012355556888867944785564388458457 Q ss_pred CCCCCCCCCCEEEECCCCCCCCCCEEEECCCCC------CCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHH Q ss_conf 255445675226861465431377043046134------466631567766544201344650201665204588 Q gi|254780583|r 110 ATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR------IFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNA 178 (256) Q Consensus 110 ~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr------~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl 178 (256) +|||||+||+|||+++.+++|+||++|....+. .+.++..++++||+||.+|+++ .|+|||.....+. T Consensus 167 ~~PGHt~~~~~~~~~~~~vlf~GD~l~~~~~~~~~~~~~~~~~~~~~~~~Sl~~l~~l~~~-~v~p~Hg~~~~~~ 240 (317) T 2zo4_A 167 WTPGHADGHAAFYLEEEGVLLAGDALLEKVSPNVGLWAYTRENPLKDFLRSLDRLADLGAR-VAYAGHFGPIADV 240 (317) T ss_dssp ECCSSSTTCEEEEETTTTEEEEETSCCSSSCCCCCCCTTSCSCHHHHHHHHHHHHHTSCCS-EEEESSSSCBSCH T ss_pred CCCCCCCCCEEEEECCCCEEEEECEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-EEECCCCCCCCCH T ss_conf 7887899878999868885787048637877866788899888599999999998669998-9988999977899 No 10 >1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor, succinic acid inhibitor, hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A Probab=99.96 E-value=1.3e-28 Score=204.77 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=131.7 Q ss_pred EEEEEECCCCEEEEECCC----CHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCCCC--- Q ss_conf 699998899849998699----9899999999859964399985898433000001111000101200012343233--- Q gi|254780583|r 16 CILIHNHKYRLTAAIDAP----DTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPG--- 88 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpg----d~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i~~--- 88 (256) +|+|.++ +++++|||| +++.+++.+++.+.++++|++||.|+||++|+..|.+. +++++++......+.. T Consensus 35 ~~~i~~~--~~~vliDtg~~~~~~~~~~~~i~~~~~~i~~ii~TH~H~DH~gg~~~l~~~-~~~~~a~~~~~~~~~~~~~ 111 (228) T 1jjt_A 35 GLVVLVN--AEAYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSR-SIPTYASELTNELLKKDGK 111 (228) T ss_dssp EEEEEET--TEEEEESCCSSHHHHHHHHHHHHTTTCEEEEEECSSSSHHHHTTHHHHHHT-TCCEEEEHHHHHHHHHTTC T ss_pred EEEEEEC--CEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCHHHHHHHC-CCCEEECHHHHHHHHHCCC T ss_conf 9999989--999999798998999999999996599857999789980010809999867-9988874667777763134 Q ss_pred -CCEEEEEHHCCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCC-CCCC Q ss_conf -2203310100111122233102-554456752268614654313770430461344666315677665442013-4465 Q gi|254780583|r 89 -IDHGLSDGDTFDFGSHPIKIIA-TPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSF-SDKT 165 (256) Q Consensus 89 -~~~~l~dgd~i~ig~~~~~vi~-tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~L-p~~t 165 (256) .......++.+..++..+++++ +||||+|++|+|+++.+++|+||++|.+++|.+++|+.+++++||++|+.+ |+.+ T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~gHt~~~~~~~~~~~~ilf~GD~~~~~~~~~~~~~~~~~~~~sl~~l~~~~~~~~ 191 (228) T 1jjt_A 112 VQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAK 191 (228) T ss_dssp CCCSEEECSSCCEEETTTEEEECCCCSSSTTCCEEEETTTTEEEEETTCCTTCCCCCTTCCTTTHHHHHHHHHHHTTTCS T ss_pred CCCCCCCCCCEEEECCCEEEEEEECCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC T ss_conf 21122357735996896899998279999996999934756388577726888675799999999999999996489983 Q ss_pred EEECCCCCHHHHHHHHHH Q ss_conf 020166520458898775 Q gi|254780583|r 166 HIYFGHEYTENNAYFALS 183 (256) Q Consensus 166 ~i~pGHeYt~~nl~Fa~~ 183 (256) .|+|||........+..+ T Consensus 192 ~viPgHG~~~~~~~i~~~ 209 (228) T 1jjt_A 192 LVVPSHSEVGDASLLKLT 209 (228) T ss_dssp EEEESSSCCBCTHHHHHH T ss_pred EEEECCCCCCCHHHHHHH T ss_conf 999098843598999999 No 11 >1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two monomers PER assymmetric UNIT., hydrolase; HET: GOL; 1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A* 1l9y_A Probab=99.95 E-value=1e-27 Score=198.93 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=126.7 Q ss_pred EEEEEEECCCCEEEEECCC---CHHHHHHHHHHCCCC---EEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC-- Q ss_conf 2699998899849998699---989999999985996---43999858984330000011110001012000123432-- Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAP---DTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI-- 86 (256) Q Consensus 15 y~YlI~d~~t~~~viIDpg---d~~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i-- 86 (256) .+|||.+++ .+++||+| ..+.+.+.+++.+++ |++|++||.|.||+||+..++++++++||++..+...+ T Consensus 26 ~~~li~~~~--~~iLID~G~~~~~~~i~~~l~~~g~~~~~i~~il~TH~H~DH~gg~~~~~~~~~a~i~~~~~~~~~l~~ 103 (263) T 1k07_A 26 ASYLIVTPR--GNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVILS 103 (263) T ss_dssp CCEEEEETT--EEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSSSSHHHHTTHHHHHHHHCCEEEEEHHHHHHHHT T ss_pred EEEEEEECC--EEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEEECHHHHHHHH T ss_conf 999999899--899993989520999999999769995342699978987011141999987539979994058777752 Q ss_pred ------------------CCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCC----- Q ss_conf ------------------332203310100111122233102554456752268614654313770430461344----- Q gi|254780583|r 87 ------------------PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI----- 143 (256) Q Consensus 87 ------------------~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~----- 143 (256) ...+..+.+|+.+.+|+.+++++++||||+||+||+++....+++||++|.|+++.. T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~~~~~~~~PGHt~g~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~ 183 (263) T 1k07_A 104 GGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKL 183 (263) T ss_dssp TTTTCTTTTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEEECCCCCCTTCCC T ss_pred HHHHHHHHCCCCCCCCCCCCCCEEECCCCEEECCCEEEEEEECCCCCCCCEEEEEECCCCCEECCEEEECCCCCCCCCCC T ss_conf 11100122023334667776625741674673098579999578878778999998167853878999898447888754 Q ss_pred -----CCCCHHHHHHHHHHHHCCCCCCEEECCCC Q ss_conf -----66631567766544201344650201665 Q gi|254780583|r 144 -----FEDSYAEMFESLEKIKSFSDKTHIYFGHE 172 (256) Q Consensus 144 -----~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHe 172 (256) +.++.+++.+||++|.+|+.+ .|+|||. T Consensus 184 ~~~~~~~~~~~~~~~sl~~l~~l~~~-~vi~gHg 216 (263) T 1k07_A 184 VDNITYPKIAEDYKHSIKVLESMRCD-IFLGSHA 216 (263) T ss_dssp SSCSSCTTHHHHHHHHHHHHHTBCCS-EEEESBH T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCC-EEEECCC T ss_conf 36889987799999999999789939-9990989 No 12 >1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A* Probab=99.95 E-value=9.4e-28 Score=199.14 Aligned_cols=154 Identities=19% Similarity=0.247 Sum_probs=127.0 Q ss_pred EEEEEECCCCEEEEECCCC----HHHHHHHHHHC-CCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCC----- Q ss_conf 6999988998499986999----89999999985-9964399985898433000001111000101200012343----- Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPD----TYIISKMLREK-GWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSK----- 85 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpgd----~~~i~~~l~~~-~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~----- 85 (256) +|+|.++ +.+++||+|. .+.+++.+++. +..+++|++||.|+||+||+..|++. ++++|++...... T Consensus 39 ~~li~~~--~~~iliDt~~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~~~-~~~v~~~~~~~~~~~~~~ 115 (232) T 1a7t_A 39 GMIVINN--HQAALLDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRK-GVQSYANQMTIDLAKEKG 115 (232) T ss_dssp EEEEEET--TEEEEESCCSSHHHHHHHHHHHHHHHCCEEEEEECSSSSHHHHTTHHHHHHT-TCEEEEEHHHHHHHHHHT T ss_pred EEEEEEC--CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHC-CCEEEEECCHHHHHHHCC T ss_conf 9999989--9999996989989999999999871399738999799885222339999858-995998220255654325 Q ss_pred CCCCCEEEEEHHCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCEEEECCC---CCCCCCCHHHHHHHHHHHHCC Q ss_conf 23322033101001111222331025-54456752268614654313770430461---344666315677665442013 Q gi|254780583|r 86 IPGIDHGLSDGDTFDFGSHPIKIIAT-PGHTIGHICYHFMNDHFLCVGDTLFSLGC---GRIFEDSYAEMFESLEKIKSF 161 (256) Q Consensus 86 i~~~~~~l~dgd~i~ig~~~~~vi~t-PGHT~g~i~~~~~~~~~lFtGDtLF~~g~---Gr~~~G~~~~l~~Sl~kl~~L 161 (256) .+..+..+.++..+.+|+.+++++++ ||||+||+++|++++++|||||.+|.++. |..++++..++.+||++|+++ T Consensus 116 ~~~~~~~~~~~~~~~~g~~~v~~~~~~pGHt~g~~~~~~~~~~vlf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~ 195 (232) T 1a7t_A 116 LPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNISDADVTAWPKTLDKVKAK 195 (232) T ss_dssp CCCCSEEESSEEEEEETTEEEEEECCCCSSSTTCCEEEETTTTEEEEETTSCCTTCCSCCCCTTCCTTTHHHHHHHHHHH T ss_pred CCCCCEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC T ss_conf 66660541576199989999999842389998727999589999998886278986676889999999999999999712 Q ss_pred -CCCCEEECCCC Q ss_conf -44650201665 Q gi|254780583|r 162 -SDKTHIYFGHE 172 (256) Q Consensus 162 -p~~t~i~pGHe 172 (256) |+...|+|||. T Consensus 196 ~~~~~~i~pgHG 207 (232) T 1a7t_A 196 FPSARYVVPGHG 207 (232) T ss_dssp CTTCSEEEESSS T ss_pred CCCCEEEECCCC T ss_conf 899819993899 No 13 >2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum usda 110} SCOP: d.157.1.1 Probab=99.95 E-value=6e-28 Score=200.41 Aligned_cols=154 Identities=20% Similarity=0.309 Sum_probs=127.8 Q ss_pred EEEEEECCCCEEEEECCC---CHHHHHHHHHHCCCC---EEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC--- Q ss_conf 699998899849998699---989999999985996---43999858984330000011110001012000123432--- Q gi|254780583|r 16 CILIHNHKYRLTAAIDAP---DTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI--- 86 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpg---d~~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i--- 86 (256) +|+|...+ .+++||+| .++.+.+.+++.+.+ +++|++||.|+||+||+..|++.++++||++..+...+ T Consensus 37 ~ylI~~~~--~~iLID~G~~~~~~~i~~~l~~~g~~~~~v~~ii~TH~H~DH~gg~~~l~~~~~a~i~~~~~~~~~~~~~ 114 (274) T 2gmn_A 37 VYVIKTSQ--GLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDKPLLEGG 114 (274) T ss_dssp CEEEEETT--EEEEECCCCGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHHCCEEEEEGGGHHHHHHT T ss_pred EEEEEECC--EEEEEECCCCCHHHHHHHHHHHCCCCCHHEEEEEECCCCCCCCCCHHHHHHHCCCEEEEEHHHHHHHHCC T ss_conf 99999899--9799909894349999999997599813303999698996350625565775398487501010444323 Q ss_pred ---------------CCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECC--------CCC- Q ss_conf ---------------33220331010011112223310255445675226861465431377043046--------134- Q gi|254780583|r 87 ---------------PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLG--------CGR- 142 (256) Q Consensus 87 ---------------~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g--------~Gr- 142 (256) ...+..+++|+.+++|+.+++++++||||+||+||+++..+.+++||.+|.+| +|+ T Consensus 115 ~~~~~~~~~~~~~~~~~~d~~v~~g~~~~lg~~~i~~i~tpGHt~g~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~ 194 (274) T 2gmn_A 115 YYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQP 194 (274) T ss_dssp CCTTCTTCGGGCCCCCCCSEEECTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCTTCCCSSSC T ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCEEECCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEECCCCCCCCCCCCC T ss_conf 33322112334668876408940575342276413577379889987899986455763588799956874677773778 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEECCCC Q ss_conf 466631567766544201344650201665 Q gi|254780583|r 143 IFEDSYAEMFESLEKIKSFSDKTHIYFGHE 172 (256) Q Consensus 143 ~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHe 172 (256) .+.++.+++.+||+++..|+.++ |+|||- T Consensus 195 ~~~~~~~~~~~sl~~l~~l~~d~-vipgHg 223 (274) T 2gmn_A 195 TYAGIVDDYRATFAKAKAMKIDV-LLGPHP 223 (274) T ss_dssp SSTTHHHHHHHHHHHHHHSCCSE-EECSSG T ss_pred CCCCCHHHHHHHHHHHHCCCCCE-EECCCC T ss_conf 99988999999999997699999-988989 No 14 >3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance, hydrolase; 1.65A {Chryseobacterium indologenes} Probab=99.95 E-value=1.4e-27 Score=198.12 Aligned_cols=170 Identities=15% Similarity=0.178 Sum_probs=134.4 Q ss_pred EEEEEECCCCEEEEECCC----CHHHHHHHHHHC-CCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC---- Q ss_conf 699998899849998699----989999999985-99643999858984330000011110001012000123432---- Q gi|254780583|r 16 CILIHNHKYRLTAAIDAP----DTYIISKMLREK-GWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI---- 86 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpg----d~~~i~~~l~~~-~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i---- 86 (256) +|+|..+ ..+++||+| .++.+++++++. +..+++|++||.|+||+||+..|.+. ++++|+++.....+ T Consensus 33 ~~~i~~~--~~~vlIDtg~~~~~~~~l~~~i~~~~~~~i~~ii~TH~H~DH~gG~~~~~~~-~~~i~a~~~~~~~~~~~~ 109 (219) T 3l6n_A 33 SMYLVTK--KGVVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDLSFFNNK-GIKTYATAKTNEFLKKDG 109 (219) T ss_dssp EEEEEET--TEEEEESCCSSGGGHHHHHHHHHHHHSCCEEEEECSSSSTTTTCCTHHHHHT-TCEEEECHHHHHHHHHTT T ss_pred EEEEEEC--CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHC-CCEEEEHHHHHHHHHCCC T ss_conf 9999989--9999992989989999999999860299638999799995433868999628-988996022223321013 Q ss_pred -CCCCEEEEEHHCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCEEEECCCCC---CCCCCHHHHHHHHHHHHCC Q ss_conf -3322033101001111222331025-5445675226861465431377043046134---4666315677665442013 Q gi|254780583|r 87 -PGIDHGLSDGDTFDFGSHPIKIIAT-PGHTIGHICYHFMNDHFLCVGDTLFSLGCGR---IFEDSYAEMFESLEKIKSF 161 (256) Q Consensus 87 -~~~~~~l~dgd~i~ig~~~~~vi~t-PGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr---~~~G~~~~l~~Sl~kl~~L 161 (256) +.....+.+++.+.+|+..++++++ ||||+||+++|+++.++||+||.+|.++.+. ..+++..++.+||+++.++ T Consensus 110 ~~~~~~~~~~~~~~~~g~~~~~v~~~~pgHt~g~~~v~~~~~~vlf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~ 189 (219) T 3l6n_A 110 KATSTEIIKTGKPYRIGGEEFVVDFLGEGHTADNVVVWFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAK 189 (219) T ss_dssp CCCCSEECCTTSEEEETTEEEEEECCCCSSSSSCCEEEETTTTEEEEETTSCCTTCSSCCCCTTCCTTTHHHHHHHHHHH T ss_pred CCCCEEEECCCCEEEECCEEEEEEECCCCCCCCCEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 34412882388578628856899724799999858999478999999283778985686888998999999999999700 Q ss_pred -CCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf -44650201665204588987750234478999999999 Q gi|254780583|r 162 -SDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVK 199 (256) Q Consensus 162 -p~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~ 199 (256) |+.+.|+|||.-. .+...++++++.++ T Consensus 190 ~~~~~~ivpgHg~~-----------~~~~~i~~~l~~l~ 217 (219) T 3l6n_A 190 YSKATLIIPGHDEW-----------KGGGHVEHTLELLN 217 (219) T ss_dssp CTTCSEEEESBSCC-----------TTSCHHHHHHHHHH T ss_pred CCCCCEEECCCCCC-----------CCHHHHHHHHHHHH T ss_conf 79998999489987-----------89899999999985 No 15 >1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1 Probab=99.94 E-value=1.6e-26 Score=191.22 Aligned_cols=155 Identities=17% Similarity=0.233 Sum_probs=125.2 Q ss_pred EEEEEECCCCEEEEECCC----CHHHHHHHHHH-CCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCC-----C Q ss_conf 699998899849998699----98999999998-5996439998589843300000111100010120001234-----3 Q gi|254780583|r 16 CILIHNHKYRLTAAIDAP----DTYIISKMLRE-KGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESS-----K 85 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpg----d~~~i~~~l~~-~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~-----~ 85 (256) +|+|.++ ..+++||+| ..+.+++.+++ .+..+++|++||+|+||++|+..|.+. ++++|++..... . T Consensus 29 ~~~i~~~--~~~iliD~~~~~~~~~~l~~~i~~~~~~~i~~vi~TH~H~DH~~G~~~~~~~-~~~i~~~~~~~~~~~~~~ 105 (223) T 1m2x_A 29 AVYLVTD--KGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKI-GAKTYSTKMTDSILAKEN 105 (223) T ss_dssp EEEEEET--TEEEEESCCSSGGGHHHHHHHHHHHHCCCEEEEECSSSSTTTTTTHHHHHHT-TCEEEEEHHHHHHHHHTT T ss_pred EEEEEEC--CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHC-CCEEEECCCHHHHHHCCC T ss_conf 9999989--9899997999989999999999884199758999679997510619999868-997996120444442036 Q ss_pred CCCCCEEEEEHHCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCEEEECCCCC---CCCCCHHHHHHHHHHHHCC Q ss_conf 23322033101001111222331025-5445675226861465431377043046134---4666315677665442013 Q gi|254780583|r 86 IPGIDHGLSDGDTFDFGSHPIKIIAT-PGHTIGHICYHFMNDHFLCVGDTLFSLGCGR---IFEDSYAEMFESLEKIKSF 161 (256) Q Consensus 86 i~~~~~~l~dgd~i~ig~~~~~vi~t-PGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr---~~~G~~~~l~~Sl~kl~~L 161 (256) .+..+..+.++..+.+|+.+++++++ ||||+||+++|+++.++|||||.+|.+++.. +.+++..++.+||+++.+. T Consensus 106 ~~~~~~~~~~~~~~~lg~~~i~~~~~~pgHt~~~~~~~~p~~~vlf~GD~~~~~~~~~~~~~~~~~~~~~~~sl~~l~~~ 185 (223) T 1m2x_A 106 KPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDWTQSVHNIQQK 185 (223) T ss_dssp CCCCSEEESSCEEEEETTEEEEEECCCSSSSSSCCEEEETTTTEEEEETTSCCTTCSSCCCCTTCCHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCEEEEECCEEEEEECCCCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 65674123563389989989998246799999868999479999998276888996774788998999999999999700 Q ss_pred -CCCCEEECCCCC Q ss_conf -446502016652 Q gi|254780583|r 162 -SDKTHIYFGHEY 173 (256) Q Consensus 162 -p~~t~i~pGHeY 173 (256) ++...|+|||.. T Consensus 186 ~~~~~~viPgHG~ 198 (223) T 1m2x_A 186 FSGAQYVVAGHDD 198 (223) T ss_dssp TTTCSEEEESBSC T ss_pred CCCCCEEECCCCC T ss_conf 7999799979898 No 16 >2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB: 2wrs_A* 1ko3_A 1ko2_A Probab=99.94 E-value=1.3e-26 Score=191.74 Aligned_cols=155 Identities=19% Similarity=0.251 Sum_probs=120.8 Q ss_pred CCEEEEEEECCCCEEEEECCC-C---HHHHHHHHHH-CCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCC-- Q ss_conf 762699998899849998699-9---8999999998-59964399985898433000001111000101200012343-- Q gi|254780583|r 13 DNFCILIHNHKYRLTAAIDAP-D---TYIISKMLRE-KGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSK-- 85 (256) Q Consensus 13 DNy~YlI~d~~t~~~viIDpg-d---~~~i~~~l~~-~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~-- 85 (256) .| +|+|.++ +.+++||+| . ++.+++.+++ .+..+++|++||.|+||+||+..|++. ++++|++...... T Consensus 38 ~N-~~~i~~~--~~~vlIDtg~~~~~~~~l~~~i~~~~~~~v~~vi~TH~H~DH~gg~~~~~~~-~~~~~~~~~~~~~~~ 113 (230) T 2whg_A 38 SN-GLIVRDG--DELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAA-GVATYASPSTRRLAE 113 (230) T ss_dssp EE-EEEEEET--TEEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHHT-TCEEEECHHHHHHHH T ss_pred CE-EEEEEEC--CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHC-CCEEEECHHHHHHHH T ss_conf 18-9999969--9999997989979999999999983199738999779982001609999758-994998789999998 Q ss_pred -----CC--CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCC---CCCCCCHHHHHHHH Q ss_conf -----23--322033101001111222331025544567522686146543137704304613---44666315677665 Q gi|254780583|r 86 -----IP--GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCG---RIFEDSYAEMFESL 155 (256) Q Consensus 86 -----i~--~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~G---r~~~G~~~~l~~Sl 155 (256) .+ ..+..+.+++.+.+|+.++.+ ..||||+||+++|++++++||+||++|....+ .+.+++..++.+|| T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~pGHt~g~~~~~~~~~~vlf~GD~v~~~~~~~~~~~~~~~~~~~~~sl 192 (230) T 2whg_A 114 AEGNEIPTHSLEGLSSSGDAVRFGPVELFY-PGAAHSTDNLVVYVPSANVLYGGCAVHELSRTSAGNVADADLAEWPTSV 192 (230) T ss_dssp HHTCCCCSEECCSCSSTTCEEEETTEEEEC-CCSSSSTTCCEEEETTTTEEEEETTSCCTTCCSCCCCTTCCTTTHHHHH T ss_pred HCCCCCCCCCCCEEECCCCEEEECCEEEEE-ECCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCHHHHHHHH T ss_conf 527667643420350368668867868998-3799998979999868899998778745787887888999999999999 Q ss_pred HHHHCC-CCCCEEECCCC Q ss_conf 442013-44650201665 Q gi|254780583|r 156 EKIKSF-SDKTHIYFGHE 172 (256) Q Consensus 156 ~kl~~L-p~~t~i~pGHe 172 (256) ++++++ |+..+|+|||. T Consensus 193 ~~l~~~~~~~~~v~PGHG 210 (230) T 2whg_A 193 ERIQKHYPEAEVVIPGHG 210 (230) T ss_dssp HHHHHHCTTCCEEEESSS T ss_pred HHHHHHCCCCCEEECCCC T ss_conf 999700899849996999 No 17 >1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic resistance, binuclear zinc, hydrolase; 1.70A {Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB: 2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A* 2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A Probab=99.93 E-value=8.8e-26 Score=186.36 Aligned_cols=184 Identities=14% Similarity=0.188 Sum_probs=132.4 Q ss_pred EEEEEECCCCEEEEECCC---CHHHHHHHHHHCCCC---EEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC--- Q ss_conf 699998899849998699---989999999985996---43999858984330000011110001012000123432--- Q gi|254780583|r 16 CILIHNHKYRLTAAIDAP---DTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI--- 86 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpg---d~~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i--- 86 (256) +|||..++ .+++||+| ....+++.+++.+++ |++|++||.|+||+||+..|.++++++||++..+...+ T Consensus 40 ~~li~~~~--g~iLID~G~~~~~~~~~~~l~~~g~~~~~I~~Il~TH~H~DH~gg~~~l~~~~~~~V~~~~~~~~~~~~~ 117 (269) T 1sml_A 40 ALLVQTPD--GAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARG 117 (269) T ss_dssp CEEEEETT--EEEEECCBSGGGHHHHHHHHHHTTCCGGGEEEEECSCCSHHHHTTHHHHHHHSSCEEEECHHHHHHHHTT T ss_pred EEEEEECC--EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCEEEECCCCCCCCCCHHHHHHHHCCCEEECHHHHHHHHHC T ss_conf 99999899--7699848995129999999997499803254999799983541509999998699476378898877501 Q ss_pred ---------------CCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCC--------- Q ss_conf ---------------33220331010011112223310255445675226861465431377043046134--------- Q gi|254780583|r 87 ---------------PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR--------- 142 (256) Q Consensus 87 ---------------~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr--------- 142 (256) ...+..+.+|+.+.+|+.+++++++||||+|++||++...+..++||.+|.+.++. T Consensus 118 ~~~~~~~~~~~~~~~~~~d~~l~~g~~l~lg~~~~~~~~~PgH~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 197 (269) T 1sml_A 118 GSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNP 197 (269) T ss_dssp TCSBTTTBTSSCCCCCCCSEECCTTCEEEETTEEEEEEECCSSSTTCEEEEEEEEETTEEEEEEECCCCCCTTCCCSSCT T ss_pred CHHHHHHCCCCCCCCCCCCEECCCCCEEECCCCEEEEEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCC T ss_conf 11223312356788742525637998885099258999678889788899996345785217998388678996875689 Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHH Q ss_conf 466631567766544201344650201665204588987750--2344789999999998885 Q gi|254780583|r 143 IFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSC--DPHNLELQKYCSKVKSMRS 203 (256) Q Consensus 143 ~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~--~p~n~~~~~~~~~~~~~~~ 203 (256) .+.+..+++..|++|++.|+.++ ++|||-. ..|...+... ..+-..++.+.+.+++... T Consensus 198 ~~~~~~~~~~~sl~~l~~l~~~~-l~~~H~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (269) T 1sml_A 198 RYPHLIEDYRRSFATVRALPCDV-LLTPHPG-ASNWDYAAGARAGAKALTCKAYADAAEQKFD 258 (269) T ss_dssp TCTTHHHHHHHHHHHHHTSCCSE-EECSSGG-GGTCCGGGGGGTTTTCCCHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHCCCCCE-EECCCCC-CCCCCHHHHCCCCCCHHHHHHHHHHHHHHHH T ss_conf 99865999999999997789899-9909987-2320113222545445789999999999999 No 18 >2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET: M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1 Probab=99.93 E-value=8.7e-26 Score=186.39 Aligned_cols=152 Identities=18% Similarity=0.246 Sum_probs=120.2 Q ss_pred EEEEEECCCCEEEEECCCC----HHHHHHHHHH-CCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC---- Q ss_conf 6999988998499986999----8999999998-599643999858984330000011110001012000123432---- Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPD----TYIISKMLRE-KGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI---- 86 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpgd----~~~i~~~l~~-~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i---- 86 (256) +|+|.++ +.+++||+|. ++.+++.+++ .+..+++|++||.|+||++|+..+++. ++++|++......+ T Consensus 71 ~~~v~~~--~~~vlIDtg~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gG~~~~~~~-~~~v~a~~~~~~~~~~~~ 147 (266) T 2yz3_A 71 GLIVRDG--DELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAA-GVATYASPSTRRLAEVEG 147 (266) T ss_dssp EEEEEET--TEEEEESCCSSHHHHHHHHHHHHHHTCSCEEEEECSSSSHHHHTTHHHHHHT-TCEEEECHHHHHHHHTTT T ss_pred EEEEEEC--CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHCCCHHHHHCC-CCEEEEECCHHHHHHHCC T ss_conf 9999989--9999990999989999999999984399727999799981000875565206-976999620223333214 Q ss_pred ---C--CCCEEEEEHHCCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCEEEECCCCC---CCCCCHHHHHHHHHH Q ss_conf ---3--32203310100111122233102-55445675226861465431377043046134---466631567766544 Q gi|254780583|r 87 ---P--GIDHGLSDGDTFDFGSHPIKIIA-TPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR---IFEDSYAEMFESLEK 157 (256) Q Consensus 87 ---~--~~~~~l~dgd~i~ig~~~~~vi~-tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr---~~~G~~~~l~~Sl~k 157 (256) + ..+....+++.+.+|+.++ ++ .||||+|++++|++++++||+||.+|.++.+. +..++...+.+||++ T Consensus 148 ~~~~~~~~~~~~~~~~~~~~g~v~~--~~~gpgHt~~~~~v~~p~~~vLf~GD~v~~~~~~~~~~~~~~~~~~~~~sl~~ 225 (266) T 2yz3_A 148 NEIPTHSLEGLSSSGDAVRFGPVEL--FYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIER 225 (266) T ss_dssp CCCCSEECCSCSSTTEEEEETTEEE--EECCSSSSSSCCEEEEGGGTEEEEETTSCCTTCCSCCCCTTCCTTTHHHHHHH T ss_pred CCCCCCCCCEECCCCCEEEECCEEE--EEECCCCCCCCEEEEECCCCEEEECCEECCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 6677544314604686788788788--74069999984899988999999864687788678888899999999999999 Q ss_pred HHCC-CCCCEEECCCC Q ss_conf 2013-44650201665 Q gi|254780583|r 158 IKSF-SDKTHIYFGHE 172 (256) Q Consensus 158 l~~L-p~~t~i~pGHe 172 (256) +..+ |+.+.|+|||. T Consensus 226 l~~~~pd~~~vvPGHG 241 (266) T 2yz3_A 226 IQQHYPEAQFVIPGHG 241 (266) T ss_dssp HHHHCTTCSEEEESSS T ss_pred HHCCCCCCCEEECCCC T ss_conf 9700899839987999 No 19 >3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding, periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A Probab=99.93 E-value=3.4e-25 Score=182.52 Aligned_cols=154 Identities=16% Similarity=0.203 Sum_probs=114.2 Q ss_pred EEEEEECCCCEEEEECCCC----HHHHHHHHHHC-CCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCCC--- Q ss_conf 6999988998499986999----89999999985-996439998589843300000111100010120001234323--- Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPD----TYIISKMLREK-GWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIP--- 87 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpgd----~~~i~~~l~~~-~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i~--- 87 (256) +|+|.+++ .+++||+|- ++.+.+.+++. +..+++|++||.|+||+||+..|++. +++|+++......+. T Consensus 25 ~~~i~~~~--~~vliD~g~~~~~~~~l~~~i~~~~~~pi~~vi~TH~H~DH~gg~~~~~~~-~~~i~a~~~~~~~~~~~~ 101 (227) T 3iog_A 25 SMVYFGAK--GVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSI-GAKVVSTRQTRDLMKSDW 101 (227) T ss_dssp EEEEECSS--CEEEESCCSSHHHHHHHHHHHHTTCCSCEEEEECSSSSHHHHTTHHHHHHT-TCEEEEEHHHHHHHHHHH T ss_pred EEEEEECC--EEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHCCCC-CCEEEECHHHHHHHHHHH T ss_conf 89999799--869992989979999999999861499841999689996532812330546-836761798999987412 Q ss_pred ---------------CCC---EEEEEHHCCCCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCH Q ss_conf ---------------322---03310100111122233102-55445675226861465431377043046134466631 Q gi|254780583|r 88 ---------------GID---HGLSDGDTFDFGSHPIKIIA-TPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSY 148 (256) Q Consensus 88 ---------------~~~---~~l~dgd~i~ig~~~~~vi~-tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~ 148 (256) ... ......+.+++++..+++++ +||||+||+++|++++++||+||.++ .++|.++.++. T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~g~v~~~~~~pGHt~g~~~~~~~~~~vlf~GD~~~-~~~~~~~~~~~ 180 (227) T 3iog_A 102 AEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGGCILK-EKLGNLSFADV 180 (227) T ss_dssp HHHHHHHHHHCTTSCCCCCCCCSEEESSCEEETTTTEEEECCCCSSSSSCCEEEETTTTEEECGGGSC-SSCCCCTTCCT T ss_pred HHHHHHHHHCCCCCCCCCCCCCCEEECCCEEECCCCEEEEEECCCCCCCCEEEEECCCCEEEECCCCC-CCCCCCCCCCH T ss_conf 33322222025545787656886886585885587189999578989986646727878999746357-89678888899 Q ss_pred HHHHHHHHHHHCC-CCCCEEECCCCC Q ss_conf 5677665442013-446502016652 Q gi|254780583|r 149 AEMFESLEKIKSF-SDKTHIYFGHEY 173 (256) Q Consensus 149 ~~l~~Sl~kl~~L-p~~t~i~pGHeY 173 (256) .++.+||++|.++ ++...|+|||.. T Consensus 181 ~~~~~sl~~l~~~~~~~~~i~pgHg~ 206 (227) T 3iog_A 181 KAYPQTLERLKAMKLPIKTVIGGHDS 206 (227) T ss_dssp THHHHHHHHHHHTCCCCSEEECSSSC T ss_pred HHHHHHHHHHHCCCCCCCEEECCCCC T ss_conf 99999999997037999799969998 No 20 >1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT; 1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A 1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A 3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A 2bfz_A 2bg6_A 2bga_A ... Probab=99.92 E-value=2.5e-25 Score=183.38 Aligned_cols=155 Identities=17% Similarity=0.185 Sum_probs=124.6 Q ss_pred CEEEEEEECCCCEEEEECCC----CHHHHHHHHHH-CCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC-- Q ss_conf 62699998899849998699----98999999998-599643999858984330000011110001012000123432-- Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAP----DTYIISKMLRE-KGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI-- 86 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpg----d~~~i~~~l~~-~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i-- 86 (256) | +|+|.++ +.+++|||| .++.+++.+++ .+..+++|++||.|+||+||+..|++. +++++.+..+.... T Consensus 42 N-~~~I~~~--~~~vlID~g~~~~~~~~l~~~i~~~~~~~v~~ii~TH~H~DH~gg~~~~~~~-~~~i~~~~~~~~~~~~ 117 (227) T 1mqo_A 42 N-GLVLNTS--KGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKER-GIKAHSTALTAELAKK 117 (227) T ss_dssp E-EEEEEET--TEEEEESCCSSHHHHHHHHHHHHHHHTSCEEEEECCCCSHHHHTTHHHHHHH-TCEEECBHHHHHHHHH T ss_pred E-EEEEEEC--CEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHC-CCEEEEECHHHHHHHH T ss_conf 8-9999979--9989994989989999999999974499816999678981023539999747-9989994102333321 Q ss_pred ---CCCCEEEEEHHCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCEEEECCC---CCCCCCCHHHHHHHHHHHH Q ss_conf ---3322033101001111222331025-54456752268614654313770430461---3446663156776654420 Q gi|254780583|r 87 ---PGIDHGLSDGDTFDFGSHPIKIIAT-PGHTIGHICYHFMNDHFLCVGDTLFSLGC---GRIFEDSYAEMFESLEKIK 159 (256) Q Consensus 87 ---~~~~~~l~dgd~i~ig~~~~~vi~t-PGHT~g~i~~~~~~~~~lFtGDtLF~~g~---Gr~~~G~~~~l~~Sl~kl~ 159 (256) ......+.+++.+.+|+.+++.+++ ||||+|++++|+++.+++|+||.+|.++. |..+.++.+++.+||+++. T Consensus 118 ~~~~~~~~~~~~~~~l~~g~~~~~~~~~~pgHt~~~~~~~~~~~~vl~~GD~i~~~~~~~~~~~~~~~~~~~~~sl~~l~ 197 (227) T 1mqo_A 118 NGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVL 197 (227) T ss_dssp TTCCCCCCCBCSEEEEEETTEEEEEECCCCSSSSSCCEEEETTTTEEEEETTSCCTTCCSCCCCTTCCHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCEEECCCEEEEEEECCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 25444332125674564188078888227987788458870678859960085679856757889989999999999998 Q ss_pred C-CCCCCEEECCCC Q ss_conf 1-344650201665 Q gi|254780583|r 160 S-FSDKTHIYFGHE 172 (256) Q Consensus 160 ~-Lp~~t~i~pGHe 172 (256) . +|+.+.|+|||. T Consensus 198 ~~~~~~~~vvPgHG 211 (227) T 1mqo_A 198 KRYRNINAVVPGHG 211 (227) T ss_dssp HHCCSCSEEEESSS T ss_pred HHCCCCCEEEECCC T ss_conf 33799989995989 No 21 >2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistance, structure, hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa} Probab=99.92 E-value=6e-25 Score=180.97 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=126.0 Q ss_pred EEEEEECCCCEEEEECCCC----HHHHHHHHHHC-CCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC---- Q ss_conf 6999988998499986999----89999999985-99643999858984330000011110001012000123432---- Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPD----TYIISKMLREK-GWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI---- 86 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpgd----~~~i~~~l~~~-~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i---- 86 (256) +|++.. +.+.+++||+|. .+.+.+++++. +..+.+|++||.|+||+||+..|++ .+++|+++..+...+ T Consensus 32 ~~~i~~-~dg~viliD~~~~~~~~~~l~~~~~~~~~~~v~~II~TH~H~DH~Gg~~~~~~-~~~~i~a~~~~~~~~~~~~ 109 (246) T 2fhx_A 32 VLVAKM-LDGTVVIVSSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTGGNEIYKK-MGAETWSSDLTKQLRLEEN 109 (246) T ss_dssp EEEEEC-TTSEEEEESCCSSHHHHHHHHHHHHHHHCCSEEEEECCSSSHHHHTTHHHHHH-TTCEEEEEHHHHHHHHHHH T ss_pred EEEEEC-CCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHCC-CCCEEEECHHHHHHHHHHC T ss_conf 999993-89879999999998999999999997459966999979999653488888524-7965885388889988602 Q ss_pred ---------------------------CCCCEEEEEHHCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCEEEEC Q ss_conf ---------------------------3322033101001111222331025-544567522686146543137704304 Q gi|254780583|r 87 ---------------------------PGIDHGLSDGDTFDFGSHPIKIIAT-PGHTIGHICYHFMNDHFLCVGDTLFSL 138 (256) Q Consensus 87 ---------------------------~~~~~~l~dgd~i~ig~~~~~vi~t-PGHT~g~i~~~~~~~~~lFtGDtLF~~ 138 (256) +.....+.+++.+.+|+..++++++ ||||++++++++++++++|+||.+|.+ T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ght~~~~~~~~~~~~vl~~GD~~~~~ 189 (246) T 2fhx_A 110 KKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPK 189 (246) T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTCCCCCSEEECTTTCEEEEETTEEEEEECCCCSSSTTCCEEEETTTTEEEEETTCCSS T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCEEEECCEEEEEEECCCCCCCCCEEEEECCCCEEEEECEECCC T ss_conf 00001234430111100023566665788607737998999799456764137865678336884789999992761789 Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCC Q ss_conf 61344666315677665442013446502016652 Q gi|254780583|r 139 GCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEY 173 (256) Q Consensus 139 g~Gr~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHeY 173 (256) +.+.++.++.+++.+||+||.+|+.+ .|+|||.- T Consensus 190 ~~~~~~~~~~~~~~~sL~~l~~l~~~-~l~pGHG~ 223 (246) T 2fhx_A 190 ELGYLGDANVKAWPDSARRLKKFDAK-IVIPGHGE 223 (246) T ss_dssp CCCCCTTCCTTTHHHHHHHGGGSCCS-EEEESBSC T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCC-EEEECCCC T ss_conf 98888999999999999999779949-99949999 No 22 >3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone signal, metallo-beta-lactamase FOL conserved hypothetical protein; HET: EPE; 1.80A {Sulfolobus tokodaii} Probab=99.92 E-value=2.9e-26 Score=189.47 Aligned_cols=155 Identities=23% Similarity=0.232 Sum_probs=117.8 Q ss_pred ECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCCC--- Q ss_conf 05762699998899849998699989999999985996439998589843300000111100010120001234323--- Q gi|254780583|r 11 YHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIP--- 87 (256) Q Consensus 11 ~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i~--- 87 (256) ...+.+|||.++ +.+++||||-...+.. +. .--+|++|++||.|+||+||+..|++.++++||++......+. T Consensus 17 ~~~~n~~li~~~--~~~~lID~G~~~~~~~-~~-~~~~i~~VilTH~H~DH~gg~~~l~~~~~a~i~~~~~~~~~~~~~~ 92 (261) T 3adr_A 17 PEIATVYVMCGE--KLTVMIDAGVSNSIAD-FS-FLDKLDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGFKKYLTSED 92 (261) T ss_dssp GGGSEEEEEECS--SCEEEECCCCTTCCCC-CT-TCSCCCEEECSCCSGGGTTTHHHHHHHSCCEEEEETTCTHHHHSHH T ss_pred CCEEEEEEEEEC--CEEEEECCCCCHHHHH-HH-CCCCCCEEEECCCCCCCCCCHHHHHHCCCCCEEECHHHHHHHHCCH T ss_conf 876899999949--9589987999829998-62-4067899995989864428766765435674333787999862501 Q ss_pred -----------------------------CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEEC Q ss_conf -----------------------------322033101001111222331025544567522686146543137704304 Q gi|254780583|r 88 -----------------------------GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSL 138 (256) Q Consensus 88 -----------------------------~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~ 138 (256) .....+.+|+.+++|+.+++++++||||+||++|+. +++|||||+++.. T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lg~~~~~~~~~pGHt~~~~~~~~--~~vlftGD~~~~~ 170 (261) T 3adr_A 93 GLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIYTPGHARHHMSVLV--DDFLFTGDSAGAY 170 (261) T ss_dssp HHHHHHHHHHHHHTHHHHHHCCCCSCCCGGGEEEECSCCEEECSSSEEEEEECTTSCTTCEEEEE--TTEEEEETSSCEE T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCEEEEECCCEEEEEECCCCCCCCEEEEE--CCEEEECCCCCCC T ss_conf 24567788887640000101466555565524883363389506610047757988887689998--9999989846867 Q ss_pred CC---CC--CCCCCHHHHHHHHHHHHCCCCCCEEECCCC Q ss_conf 61---34--466631567766544201344650201665 Q gi|254780583|r 139 GC---GR--IFEDSYAEMFESLEKIKSFSDKTHIYFGHE 172 (256) Q Consensus 139 g~---Gr--~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHe 172 (256) .. ++ .+.++.+++.+||++|.+|+.+ +++|||- T Consensus 171 ~~~~~~~~~~~~~~~~~~~~sl~~l~~l~~~-~i~pgHg 208 (261) T 3adr_A 171 FNGVVIPTTPPVIDYKMYMESLKRQIELKPK-VVGFAHG 208 (261) T ss_dssp ETTEEECCCCSCCCHHHHHHHHHHHHHTCCS-EEEETTT T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCC-EEEECCC T ss_conf 7886326899998999999999999779989-9992999 No 23 >2p97_A Hypothetical protein; putative metal-dependent hydrolase, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.157.1.12 Probab=99.92 E-value=7.9e-25 Score=180.20 Aligned_cols=150 Identities=21% Similarity=0.265 Sum_probs=126.4 Q ss_pred EEEEEEECCCCEEEEECCC-CHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCCCC-CCEE Q ss_conf 2699998899849998699-9899999999859964399985898433000001111000101200012343233-2203 Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAP-DTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPG-IDHG 92 (256) Q Consensus 15 y~YlI~d~~t~~~viIDpg-d~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i~~-~~~~ 92 (256) .+|+|..++ ..++|||+ ..+...+.+++.+ .+.+|++||. ||++++..+++++++++|++..+...++. .++. T Consensus 25 n~~lv~~~~--g~vlIDp~~~~~~~~~~l~~~g-~v~~iv~TH~--dH~g~~~~~~~~~~a~i~~~~~~~~~~~~~~d~~ 99 (201) T 2p97_A 25 NGFAWIRPE--GNILIDPVALSNHDWKHLESLG-GVVWIVLTNS--DHVRSAKEIADQTYTKIAGPVAEKENFPIYCDRW 99 (201) T ss_dssp EEEEECCTT--CCEEESCCCCCHHHHHHHHHTT-CCSEEECSSG--GGCTTHHHHHHHSCCEEEEEGGGTTSCSSCCSEE T ss_pred EEEEEEECC--EEEEEECCCCCHHHHHHHHHCC-CCEEEEECCH--HHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEE T ss_conf 899999899--8599949988199999998569-9649998888--8988999999987990993142133356789888 Q ss_pred EEEHHCCCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCEEEECCCCCC------CCCCHHHHHHHHHHHHCCCCCC Q ss_conf 310100111122233102554-456752268614654313770430461344------6663156776654420134465 Q gi|254780583|r 93 LSDGDTFDFGSHPIKIIATPG-HTIGHICYHFMNDHFLCVGDTLFSLGCGRI------FEDSYAEMFESLEKIKSFSDKT 165 (256) Q Consensus 93 l~dgd~i~ig~~~~~vi~tPG-HT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~------~~G~~~~l~~Sl~kl~~Lp~~t 165 (256) +.+|+.+..| ++++++|| ||+||++|+. .+++|||||+++..+.|++ +.++..++.+|++||.++++.. T Consensus 100 ~~dg~~~~~g---~~vi~~pG~Ht~g~v~~~~-~~~~Lf~GD~l~~~~~g~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~ 175 (201) T 2p97_A 100 LSDGDELVPG---LKVMELQGSKTPGELALLL-EETTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVE 175 (201) T ss_dssp ECTTCBSSTT---EEEEEECSSSSTTEEEEEE-TTTEEEECSSEEBSSTTSCEECCGGGCSCHHHHHHHHHHHHTCTTCC T ss_pred ECCCCEEEEE---EEEEEECCCCCCCCCCEEE-CCCEEEECCEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC T ss_conf 4268886501---7999947888999843330-35639989881578999721578766779999999999996179996 Q ss_pred EEECCCCC Q ss_conf 02016652 Q gi|254780583|r 166 HIYFGHEY 173 (256) Q Consensus 166 ~i~pGHeY 173 (256) .|+|||.+ T Consensus 176 ~i~pgHG~ 183 (201) T 2p97_A 176 AVLVGDGW 183 (201) T ss_dssp EEEESBBC T ss_pred EEECCCCC T ss_conf 99958997 No 24 >2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis} Probab=99.92 E-value=4.1e-25 Score=182.05 Aligned_cols=157 Identities=18% Similarity=0.094 Sum_probs=120.7 Q ss_pred CEEEEEEECCCCEEEEECCCC---HHHHHHHHHHC-C-CCEEEEEECCCCHHHHCHHHHHHHH-CCCEEEECCCCCCCC- Q ss_conf 626999988998499986999---89999999985-9-9643999858984330000011110-001012000123432- Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD---TYIISKMLREK-G-WFLTHIFNTHHHIDHTRANLNLKKF-FNCTIFGPLEESSKI- 86 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd---~~~i~~~l~~~-~-~~i~~Il~TH~H~DHigg~~~l~~~-~~~~v~~~~~~~~~i- 86 (256) | +|||.++ +.++||||. .+.+++.+++. + -+|++|++||.|+||+||+..|.+. ++++|+++......+ T Consensus 42 N-sYLI~~e---~~vLIDtg~~~~~~~~l~~i~~~i~~~~I~~II~TH~H~DH~ggl~~l~~~~p~a~i~~~~~~~~~~~ 117 (414) T 2q9u_A 42 N-SYFIDDE---CPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTKKCQEHLK 117 (414) T ss_dssp C-CEEECSS---SCEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCSGGGTTTHHHHGGGSTTCEEEECHHHHHHHH T ss_pred E-EEEEECC---CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH T ss_conf 9-9999669---88999099801699999999975698779989969096647602999998788987997589998888 Q ss_pred ------CCCCEEEEEHHCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCEEEECCC-CCCC--CCC--------- Q ss_conf ------33220331010011112223310255-4456752268614654313770430461-3446--663--------- Q gi|254780583|r 87 ------PGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVGDTLFSLGC-GRIF--EDS--------- 147 (256) Q Consensus 87 ------~~~~~~l~dgd~i~ig~~~~~vi~tP-GHT~g~i~~~~~~~~~lFtGDtLF~~g~-Gr~~--~G~--------- 147 (256) ......+++|+.+.+|+.+++++++| |||+|++++|.+++++|||||.+...++ +..| +.+ T Consensus 118 ~~~~~~~~~~~~~~~g~~l~lg~~~l~~i~~p~gH~~~~~~~y~~~~~iLfsGD~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (414) T 2q9u_A 118 ILYGMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVMHLFK 197 (414) T ss_dssp HHHCCTTCCEEECCTTCCEECSSCEEEEEECTTSSSTTCEEEEETTTTEEEEETTTCCCCCCSCCBGGGSCHHHHHHHHH T ss_pred HHCCCCCCCEEEECCCCEEEECCEEEEEECCCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 74389865258715898897565589997036898689789999898968945745667888767653234266799999 Q ss_pred ----------HHHHHHHHHHHHCCCCCCEEECCCCCHH Q ss_conf ----------1567766544201344650201665204 Q gi|254780583|r 148 ----------YAEMFESLEKIKSFSDKTHIYFGHEYTE 175 (256) Q Consensus 148 ----------~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~ 175 (256) ..++.+||+||..|+.+ .|+|||-... T Consensus 198 ~y~~~~~~p~~~~~~~~Lekl~~Ldi~-~I~PgHGpi~ 234 (414) T 2q9u_A 198 EYTANILGLFSAQMRKALEVASTVEIK-YILSAHGVSW 234 (414) T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTSCCS-EEEESSSCBE T ss_pred HHHHHHHCCCHHHHHHHHHHHHCCCCC-EEEECCCCEE T ss_conf 998773022399999999997578978-9980896724 No 25 >2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidoreductase; HET: FMN; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2ohi_A* 2ohj_A* Probab=99.91 E-value=1.9e-24 Score=177.65 Aligned_cols=174 Identities=16% Similarity=0.170 Sum_probs=122.1 Q ss_pred CEEEEEEECCCCEEEEECCCC---HHHHHHHH----HHCC-CCEEEEEECCCCHHHHCHHHHHHHH-CCCEEEECCCCCC Q ss_conf 626999988998499986999---89999999----9859-9643999858984330000011110-0010120001234 Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD---TYIISKML----REKG-WFLTHIFNTHHHIDHTRANLNLKKF-FNCTIFGPLEESS 84 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd---~~~i~~~l----~~~~-~~i~~Il~TH~H~DHigg~~~l~~~-~~~~v~~~~~~~~ 84 (256) | +|||.+++ .+++||||. .+.+.+.+ +..+ .+|++|++||.|+||+||+..+.+. ++++++++..... T Consensus 36 N-sYlI~~~~--~~~LIDtG~~~~~~~~~~~l~~~~~~i~~~~I~~Ii~TH~H~DH~ggl~~~~~~~~~~~~~~~~~~~~ 112 (404) T 2ohh_A 36 N-AYLVCGDE--GVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVK 112 (404) T ss_dssp C-CEEEECSS--CEEEECCCCTTCHHHHHHHHHHHHHHHTCCCCCEEECSCCSHHHHTTHHHHHHHSTTCCEEECHHHHH T ss_pred E-EEEEECCC--EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCEEEECHHHHH T ss_conf 9-99997198--25999198984389999999999864796568699989999875411999998779988996788887 Q ss_pred CC--------CCCCEEEEEHHCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCEEEECCCC--CCCC--C----- Q ss_conf 32--------33220331010011112223310255-44567522686146543137704304613--4466--6----- Q gi|254780583|r 85 KI--------PGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVGDTLFSLGCG--RIFE--D----- 146 (256) Q Consensus 85 ~i--------~~~~~~l~dgd~i~ig~~~~~vi~tP-GHT~g~i~~~~~~~~~lFtGDtLF~~g~G--r~~~--G----- 146 (256) .+ +.....+.+|+++.+|+.+++++++| |||+||+|+|.++.++|||||++...+|+ ++.. + T Consensus 113 ~l~~~~~~~~~~~~~~~~~g~~l~lg~~~l~~i~~p~gH~~~~~~~~~~~~~iLfsgD~~g~~~~~~~~~~~~~~~~~~~ 192 (404) T 2ohh_A 113 GLLKHYPSLREAEFMTVKTGDVLDLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILM 192 (404) T ss_dssp HHHHHCGGGGGSCEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEEETTTEEECTTTTCCCCCCSCCBGGGSCHHHHH T ss_pred HHHHHCCCCCCHHHEECCCCCEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 77752677762331322579889737615899952688989968999889999997976666778864101445630237 Q ss_pred -------------CHHHHHHHHHHHHCCC---CCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH Q ss_conf -------------3156776654420134---4650201665204588987750234478999999999 Q gi|254780583|r 147 -------------SYAEMFESLEKIKSFS---DKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVK 199 (256) Q Consensus 147 -------------~~~~l~~Sl~kl~~Lp---~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~ 199 (256) ...++.++|++|..|. +--.|+|||--...+- .+.++.|.+|+. T Consensus 193 ~~~~~yy~~i~~p~~~~~~~~l~~l~~L~~~~~i~~I~PgHGpv~~~~---------~~~i~~y~~~~~ 252 (404) T 2ohh_A 193 DAARKFYANLITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWTDP---------MKIIEAYTGWAT 252 (404) T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHTTCGGGCSEEECSSSCBBSSH---------HHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHCCH---------HHHHHHHHHHHH T ss_conf 777543645026768999999999986646678639962770275698---------999999998610 No 26 >1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A* Probab=99.91 E-value=2.4e-24 Score=177.08 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=120.8 Q ss_pred CEEEEEEECCCCEEEEECCCC---HHHHHHHHHHC--CCCEEEEEECCCCHHHHCHHHHHHHHC-CCEEEECCCCCCC-- Q ss_conf 626999988998499986999---89999999985--996439998589843300000111100-0101200012343-- Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD---TYIISKMLREK--GWFLTHIFNTHHHIDHTRANLNLKKFF-NCTIFGPLEESSK-- 85 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd---~~~i~~~l~~~--~~~i~~Il~TH~H~DHigg~~~l~~~~-~~~v~~~~~~~~~-- 85 (256) | +|||.++ ++++||||. .+.+++.+++. ..+|++|++||.|.||+||+..+.+.+ +++++++...... T Consensus 37 N-sYlI~~~---~~vLIDtg~~~~~~~~~~~l~~~~~~~~I~~Ii~TH~H~DH~Gg~~~l~~~~p~~~v~~~~~~~~~~~ 112 (398) T 1ycg_A 37 N-AYLIVDD---KTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMELCPDAHVLCTQRAFDSLK 112 (398) T ss_dssp C-CEEECSS---SCEEECCCCGGGHHHHHHHHHHHCSSCCCSEEEESCCSHHHHTTHHHHHHHCTTCEEEECHHHHHHHH T ss_pred E-EEEEECC---CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH T ss_conf 9-9999729---99999499846799999999975597686599927898677705999998689998996899998776 Q ss_pred -----CCCCCEEEEEHHCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCEEEECCCCC-CC-------------- Q ss_conf -----233220331010011112223310255-445675226861465431377043046134-46-------------- Q gi|254780583|r 86 -----IPGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVGDTLFSLGCGR-IF-------------- 144 (256) Q Consensus 86 -----i~~~~~~l~dgd~i~ig~~~~~vi~tP-GHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr-~~-------------- 144 (256) .+.....+.+|+++.+|+..++++++| ||+++++++|.++.++|||||.....+|.. .| T Consensus 113 ~~~~~~~~~~~~~~~g~~l~lg~~~~~~~~~p~~h~~~~~~~~~~~~~iLfsgD~~~~~~~~~~~~~d~~~~~~~~~~~~ 192 (398) T 1ycg_A 113 AHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAA 192 (398) T ss_dssp HHTCSCCCEEEECCTTCEEECSSCEEEEEECTTSSSTTCEEEEETTTTEEEEETTTCCCCCCSCCBGGGSCHHHHHHHHH T ss_pred HHCCCCCCCCEEECCCCEEEECCCEEEEEECCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 40246775506825998898168159999789888888579998898889918846767788653031122145689875 Q ss_pred -------CCCHHHHHHHHHHHHCCCCCC-EEECCCCCHH Q ss_conf -------663156776654420134465-0201665204 Q gi|254780583|r 145 -------EDSYAEMFESLEKIKSFSDKT-HIYFGHEYTE 175 (256) Q Consensus 145 -------~G~~~~l~~Sl~kl~~Lp~~t-~i~pGHeYt~ 175 (256) ..+..++.++|++|..|+.+. .|+|||--.. T Consensus 193 ~~~~~~~~~~~~~~~~~L~~l~~L~l~i~~I~PgHGpv~ 231 (398) T 1ycg_A 193 KYYANILMPFSNLITKKLDEIQKINLAIKTIAPSHGIIW 231 (398) T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHTTCCCSEEEESSSCBB T ss_pred HCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCHH T ss_conf 312100368789999999999865998249970898632 No 27 >1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1 d.157.1.3 Probab=99.90 E-value=5e-24 Score=175.01 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=118.9 Q ss_pred CEEEEEEECCCCEEEEECCCC---HHHHHHHHHHC-C-CCEEEEEECCCCHHHHCHHHHHHHHC--CCEEEECCCCCCCC Q ss_conf 626999988998499986999---89999999985-9-96439998589843300000111100--01012000123432 Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD---TYIISKMLREK-G-WFLTHIFNTHHHIDHTRANLNLKKFF--NCTIFGPLEESSKI 86 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd---~~~i~~~l~~~-~-~~i~~Il~TH~H~DHigg~~~l~~~~--~~~v~~~~~~~~~i 86 (256) | +|||.++ +.+++||||. .+.+++.+++. + .+|++|++||.|+||+||+..|.+++ +++|+++......+ T Consensus 53 N-sYLI~~~--~~~vLIDtg~~~~~~~~l~~l~~~i~~~~I~yIi~TH~H~DH~Ggl~~l~~~~~~~~~i~~~~~~~~~~ 129 (410) T 1vme_A 53 N-AYLVKLN--GANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIASNFGKRLL 129 (410) T ss_dssp E-EEEEECS--SCEEEECCCCGGGHHHHHHHHHHHSCGGGCCEEECSCCCHHHHTTHHHHHHHHCSCCEEEECHHHHHHH T ss_pred E-EEEEEEC--CEEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEECHHHHHHH T ss_conf 9-9999979--957999199756799999999975797676899949396537754999999709998999788886420 Q ss_pred C-----CCCEEEEEHHCCCCCCCCCCCCCCCC-CCCCCCEEEECCCCCCCCCCEEEECCCCC-CCCCC---H-------- Q ss_conf 3-----32203310100111122233102554-45675226861465431377043046134-46663---1-------- Q gi|254780583|r 87 P-----GIDHGLSDGDTFDFGSHPIKIIATPG-HTIGHICYHFMNDHFLCVGDTLFSLGCGR-IFEDS---Y-------- 148 (256) Q Consensus 87 ~-----~~~~~l~dgd~i~ig~~~~~vi~tPG-HT~g~i~~~~~~~~~lFtGDtLF~~g~Gr-~~~G~---~-------- 148 (256) . .....+++|+.+++|+.+++++++|| |+|+++++|. ++++||||.++.-+|+. ++..+ . T Consensus 130 ~~~~~~~~~~~v~~g~~l~lG~~~l~~i~~P~~H~p~~~~~y~--~~iLFsgD~~g~~~~~~~~~d~~~~~~e~~~~~~~ 207 (410) T 1vme_A 130 EGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYL--DGILFSCDVGGGYLLPEILDDSNESVVERYLPHVT 207 (410) T ss_dssp HHHHCCCCCEECCTTCEEEETTEEEEEEECTTSSSTTCEEEEE--TTEEEEETTTCCSSCCSSSBTTCHHHHHHHHHHHH T ss_pred HHCCCCCCCEEECCCCEEEECCEEEEEEECCCCCCCCCCCEEE--CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 1016765316835799998667269999789988899710212--89899886343567787324764025678899999 Q ss_pred -----------HHHHHHHHHHHCCCCCCEEECCCCCH Q ss_conf -----------56776654420134465020166520 Q gi|254780583|r 149 -----------AEMFESLEKIKSFSDKTHIYFGHEYT 174 (256) Q Consensus 149 -----------~~l~~Sl~kl~~Lp~~t~i~pGHeYt 174 (256) .++.++|+||..|+.+ .|+|||-.. T Consensus 208 ~yy~~i~~p~~~~v~~~L~ki~~L~i~-~I~PgHGpi 243 (410) T 1vme_A 208 KYIVTVIGHYKNYILEGAEKLSSLKIK-ALLPGHGLI 243 (410) T ss_dssp HHHHHHHGGGHHHHHHHHHHHHTSCCS-EEEESSSCB T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCCC-EEECCCCHH T ss_conf 998875063289999999998659988-996088067 No 28 >3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase, quorum quenching, alternative binding site, product complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A Probab=99.90 E-value=8.9e-24 Score=173.37 Aligned_cols=152 Identities=22% Similarity=0.358 Sum_probs=110.9 Q ss_pred EEEEEEECCCCEEEEECCCCH--------------------------HHHHHHHHHCCCC---EEEEEECCCCHHHHCHH Q ss_conf 269999889984999869998--------------------------9999999985996---43999858984330000 Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPDT--------------------------YIISKMLREKGWF---LTHIFNTHHHIDHTRAN 65 (256) Q Consensus 15 y~YlI~d~~t~~~viIDpgd~--------------------------~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~ 65 (256) |+|||..++ ..++||+|-. +.+.+.|++.|++ |++|++||.|+||+||+ T Consensus 40 ~~~LI~~~~--g~iLiDtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~p~dI~~Vi~TH~H~DH~Gg~ 117 (254) T 3dha_A 40 WCYLLETEE--GPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRIVNILKRVGYEPDDLLYIISSHLHFDHAGGN 117 (254) T ss_dssp EEEEEEETT--EEEEECCCCCGGGBTCTTTTTTSTTTTTEEEEBCGGGSHHHHHHHHTCCGGGCSEEECSCCSHHHHTTG T ss_pred EEEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHCCCC T ss_conf 899999899--519995988955322331125421112356565606689999998499979996999079972102753 Q ss_pred HHHHHHCCCEEEECCCCCCC------------CCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECC---CCCCC Q ss_conf 01111000101200012343------------2332203310100111122233102554456752268614---65431 Q gi|254780583|r 66 LNLKKFFNCTIFGPLEESSK------------IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN---DHFLC 130 (256) Q Consensus 66 ~~l~~~~~~~v~~~~~~~~~------------i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~---~~~lF 130 (256) ..+ +++++|.++.+... .+..+..+-+++.--+++ +++++|||||+||++++++. ..++| T Consensus 118 ~~f---~~A~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--i~v~~tpGHT~G~~~~~v~~~~~~~vl~ 192 (254) T 3dha_A 118 GAF---TNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYEVVPG--VQLLYTPGHSPGHQSLFIETEQSGSVLL 192 (254) T ss_dssp GGC---SSSCEEEEHHHHHHHHHCTTSCGGGSCTTSCEEEECSSEEEETT--EEEEECCSSSTTCEEEEEEETTTEEEEE T ss_pred CCC---CCCCCCCCHHHHHHHHCCCHHHHHCCCCCCCEEEEECCEEECCC--EEECCCCCCCCCCEEEEEECCCCCEEEE T ss_conf 113---56420038889998747211101104765553896075376187--4982458999423899998289988999 Q ss_pred CCCEEEECCCCC--C--CCCCHHHHHHHHHHHHCC--CCCCEEECCCCC Q ss_conf 377043046134--4--666315677665442013--446502016652 Q gi|254780583|r 131 VGDTLFSLGCGR--I--FEDSYAEMFESLEKIKSF--SDKTHIYFGHEY 173 (256) Q Consensus 131 tGDtLF~~g~Gr--~--~~G~~~~l~~Sl~kl~~L--p~~t~i~pGHeY 173 (256) +||+++..+..+ . ..-+..+..+|+++|+.+ .++++|+||||. T Consensus 193 ~GD~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~~~i~pgHd~ 241 (254) T 3dha_A 193 TIDASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGHDI 241 (254) T ss_dssp EETTCSSHHHHHSCCCCSCSCHHHHHHHHHHHHHHHHHHCCEEEESSCH T ss_pred EECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCH T ss_conf 9677885222678998678899999999999985502799799958883 No 29 >3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, NSR435A, DFA5; 1.80A {Nostoc SP} Probab=99.89 E-value=5.1e-23 Score=168.45 Aligned_cols=177 Identities=19% Similarity=0.189 Sum_probs=125.5 Q ss_pred CEEEEEEECCCCEEEEECCCCH---HHHHHHHHHCC--CCEEEEEECCCCHHHHCHHHHHHHH-CCCEEEECCCCCCCCC Q ss_conf 6269999889984999869998---99999999859--9643999858984330000011110-0010120001234323 Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPDT---YIISKMLREKG--WFLTHIFNTHHHIDHTRANLNLKKF-FNCTIFGPLEESSKIP 87 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd~---~~i~~~l~~~~--~~i~~Il~TH~H~DHigg~~~l~~~-~~~~v~~~~~~~~~i~ 87 (256) | +|||.++ ++++||||.. ..+++.+++.. -+|++|++||.|.||+||+..+++. ++++++++......+. T Consensus 44 N-~YlI~~d---~~vLIDtG~~~~~~~~l~~~~~~~~~~~I~~IilTH~H~DH~Ggl~~~~~~~p~~~v~~~~~~~~~l~ 119 (262) T 3hnn_A 44 N-SYVIEGD---KTAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAPQITFVCSLPAAGDLR 119 (262) T ss_dssp E-EEEEESS---SEEEECCCCHHHHHHHHHHHHHHSCGGGEEEEECSSCCGGGHHHHHHHHHHCTTCEEEECHHHHHHHH T ss_pred E-EEEEECC---CEEEEECCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH T ss_conf 9-9999329---99999189755799999999963784258899959977777622599997444857997789998887 Q ss_pred -------CCCEEEEEHHCCCCC-CCCCCCCC-CCCCCCCCCEEEECCCCCCCCCCEEEECCCCC-CCC------------ Q ss_conf -------322033101001111-22233102-55445675226861465431377043046134-466------------ Q gi|254780583|r 88 -------GIDHGLSDGDTFDFG-SHPIKIIA-TPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR-IFE------------ 145 (256) Q Consensus 88 -------~~~~~l~dgd~i~ig-~~~~~vi~-tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr-~~~------------ 145 (256) .....+.+|+.+.++ +..+.++. .||||+||+++|.+++++|||||.++..+++- .+. T Consensus 120 ~~~~~~~~~~~~~~~gd~~~~~~g~~l~~i~~~~~H~~~~~~~y~~~~~vLftgD~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (262) T 3hnn_A 120 AAFPDDNLNILPMRGKETLDLGKGHVLKFLPIPSPRWPAGLCTYDVQTQILYTDKIFGAHICGDDVFDDNWESFKEDQRY 199 (262) T ss_dssp HHSSSSCCEEEECCSSCEEECSTTCEEEEEECCCSSCTTCEEEEETTTTEEEEETTTCCCCCCSCCEESCGGGTHHHHHH T ss_pred HHHCCCCCCCCEECCCCEEEECCCCEEEEEECCCCCCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH T ss_conf 65235664322002551476227823799966899989962999878886996663456778865506771678999999 Q ss_pred -------CCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH Q ss_conf -------6315677665442013446502016652045889877502344789999999998885 Q gi|254780583|r 146 -------DSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRS 203 (256) Q Consensus 146 -------G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~ 203 (256) .+.+++.+||+||.+|+.+ .|+|||-.... ++-...+++|+.|++.... T Consensus 200 ~~~~~~~~~~~~~~~sL~~l~~L~~~-~I~PgHGpvi~--------~~~~~~le~Y~~w~~~~~~ 255 (262) T 3hnn_A 200 YFNCLMAPHAIHVEAALEKISDLQVR-LYAVGHGPLVR--------TSLIALTQAYADWSKAQKL 255 (262) T ss_dssp HHHHHTGGGHHHHHHHHHHHTTSCCS-EEEESSSSEES--------TTHHHHHHHHHHHHHHHHH T ss_pred HHHHHCCCCHHHHHHHHHHHHCCCCC-EEECCCCCHHH--------CCHHHHHHHHHHHHHHHHH T ss_conf 99985052499999999998789989-99957982453--------6999999999999877666 No 30 >2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A* Probab=99.89 E-value=4.3e-22 Score=162.43 Aligned_cols=206 Identities=12% Similarity=0.080 Sum_probs=129.7 Q ss_pred CEEEEEEECCCCEEEEECCCC----HHHHHHHH-HHCC-CCEEEEEECCCCHHHHCHHHHHHHH-----CCCEEEECCCC Q ss_conf 626999988998499986999----89999999-9859-9643999858984330000011110-----00101200012 Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD----TYIISKML-REKG-WFLTHIFNTHHHIDHTRANLNLKKF-----FNCTIFGPLEE 82 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd----~~~i~~~l-~~~~-~~i~~Il~TH~H~DHigg~~~l~~~-----~~~~v~~~~~~ 82 (256) | +|+|.+++ ..+|||||. +..+++.+ ++.+ ..|++|++||+|.||+||+..+.+. ..++||++... T Consensus 124 N-~~~I~gdd--G~IVIDtg~s~e~A~aale~~~~~l~~kPV~aVI~TH~H~DH~GGa~~~~e~~~~~~~~~~IiA~~~~ 200 (658) T 2cfu_A 124 N-ITFIRGDS--GWIVVDTLTTPATARAAYELVSRELGERPIRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGF 200 (658) T ss_dssp C-EEEEECSS--SEEEECCCSSHHHHHHHHHHHHHHHCCCCEEEEECSBSCHHHHTTGGGTCCHHHHHTTSSEEEEETTH T ss_pred E-EEEEEECC--EEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCHHHHHCCCCCCCCCCEEEEECCH T ss_conf 1-89999399--89999799998999999999998657998489998999701057479881354214677428973446 Q ss_pred CC-----------------------------------------------CCCCCCEEEEEHHCCCCCCCCCCCCCCCC-C Q ss_conf 34-----------------------------------------------32332203310100111122233102554-4 Q gi|254780583|r 83 SS-----------------------------------------------KIPGIDHGLSDGDTFDFGSHPIKIIATPG-H 114 (256) Q Consensus 83 ~~-----------------------------------------------~i~~~~~~l~dgd~i~ig~~~~~vi~tPG-H 114 (256) .. .++.......+++.+.+|+.+++++++|| | T Consensus 201 ~~~~~~e~~~~~~~~~rRa~~~~g~~lp~~~~g~~~~glg~~~~~~~~~~~~p~~~~~~~~~~l~igG~~~e~i~tPG~H 280 (658) T 2cfu_A 201 MEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTE 280 (658) T ss_dssp HHHHC---CTTHHHHHHHHHHHTTTTSCBSTTSBCCCSSSSCCCCSCCCCCCCSEEECTTEEEEEETTEEEEEEECTTSS T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCEEEEECCEEEEEEECCCCC T ss_conf 89976300110277888998876322785501044534456766686543589658741524677799899999768999 Q ss_pred CCCCCEEEECCCCCCCCCCEEEECC----CCC-CCCCCHHHHHHHHHHHH---CCCCCCEEECCCCC-HHHHHHHHHHCC Q ss_conf 5675226861465431377043046----134-46663156776654420---13446502016652-045889877502 Q gi|254780583|r 115 TIGHICYHFMNDHFLCVGDTLFSLG----CGR-IFEDSYAEMFESLEKIK---SFSDKTHIYFGHEY-TENNAYFALSCD 185 (256) Q Consensus 115 T~g~i~~~~~~~~~lFtGDtLF~~g----~Gr-~~~G~~~~l~~Sl~kl~---~Lp~~t~i~pGHeY-t~~nl~Fa~~~~ 185 (256) |++|+++|+++.++||+||.++..- ..| ...+++..+.++|+++. .+..+ .++|||-. +.++-+-...+. T Consensus 281 Tp~~l~vy~Pe~kvLf~GD~v~~~~~nl~t~rg~~~rd~~~w~~~Ld~l~~l~~~~ae-vl~p~Hg~Pi~G~e~I~~~L~ 359 (658) T 2cfu_A 281 SPAEMNIWLPRQKALLMAENVVGTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAE-VMFAVHNWPRWGNAEIVEVLE 359 (658) T ss_dssp SSSBEEEEETTTTEEECTTTSCSSCCCSSCTTCCCCCCHHHHHHHHHHHHHHTGGGCS-EEECSSSCCEESHHHHHHHHH T ss_pred CCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC-EEECCCCCCCCCHHHHHHHHH T ss_conf 8774799975789687436656666565455677666668899999999986055753-674489875357478999999 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHCCCCCC Q ss_conf 344789999999998885789866787------8999872822467 Q gi|254780583|r 186 PHNLELQKYCSKVKSMRSQNLYTNPST------ISLEKKVNPFLRI 225 (256) Q Consensus 186 p~n~~~~~~~~~~~~~~~~~~~tvPst------l~~Ek~~NPflr~ 225 (256) -.-..++.-.+++....++|.. |-. |-.+.+-.|++|- T Consensus 360 ~~RD~~~~l~Dqtlr~~N~G~t--~~EI~e~i~LP~~l~~~~~~~~ 403 (658) T 2cfu_A 360 KQRDLYGYLHDQTLHLANQGVT--IGQVHNRLRLPPSLDQEWYDRG 403 (658) T ss_dssp HHHHHHHHHHHHHHHHHTTTCC--TTTGGGTCCCCHHHHTCGGGSC T ss_pred HHHHHHHHHHHHHHHHHHCCCC--HHHHHHHHCCCHHHHHCCCCCC T ss_conf 9999999999999999987999--9999862408965652732120 No 31 >1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3 Probab=99.88 E-value=3.1e-23 Score=169.84 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=117.7 Q ss_pred CEEEEEEECCCCEEEEECCCC---HHHHHHHHHHC-C-CCEEEEEECCCCHHHHCHHHHHHHHC-CCEEEECCCCCCCCC Q ss_conf 626999988998499986999---89999999985-9-96439998589843300000111100-010120001234323 Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD---TYIISKMLREK-G-WFLTHIFNTHHHIDHTRANLNLKKFF-NCTIFGPLEESSKIP 87 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd---~~~i~~~l~~~-~-~~i~~Il~TH~H~DHigg~~~l~~~~-~~~v~~~~~~~~~i~ 87 (256) | +|||.++ ++++||||. .+.+++.+++. + .+|++|++||.|+||+||+..+.+.+ ++++|++......+. T Consensus 36 N-~YlI~~e---~~vLIDtg~~~~~~~~~~~l~~~i~~~~I~~II~TH~H~DHiggl~~l~~~~~~~~v~~~~~~~~~~~ 111 (402) T 1e5d_A 36 N-AYLVEDE---KTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSSLGQKAME 111 (402) T ss_dssp E-EEEECSS---SCEEECCCCGGGHHHHHHHHHTTSCGGGCCEEEECCCSHHHHTTHHHHHHHHCCSEEEEEHHHHHHHH T ss_pred E-EEEEECC---CEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHH T ss_conf 9-9999769---99999599824699999999975698788889939996678867999999779998997577888877 Q ss_pred -------CCCEEEEEHHCCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCEEEECCCCC-CC-------------- Q ss_conf -------3220331010011112223310255-445675226861465431377043046134-46-------------- Q gi|254780583|r 88 -------GIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVGDTLFSLGCGR-IF-------------- 144 (256) Q Consensus 88 -------~~~~~l~dgd~i~ig~~~~~vi~tP-GHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr-~~-------------- 144 (256) .....+.+|+++++|+..++++++| +|++|++++|.++.+++|+||.+...++.. .| T Consensus 112 ~~~~~~~~~~~~~~~g~~l~~g~~~l~~i~~p~~h~~~~~~~~~~~~~ilfsgD~~~~~~~~~~~~~d~~~~~~~~~~~~ 191 (402) T 1e5d_A 112 SHFHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLERAMR 191 (402) T ss_dssp HHHCCSSCCEEEECTTCEEECSSCEEEEEECTTSSSTTCEEEEETTTTEEEEETTTCCCCCCSCCBGGGSCHHHHHHHHH T ss_pred HCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 31467664320025863898489368999677777789669998688807704545677788762234454456899987 Q ss_pred -------CCCHHHHHHHHHHHHCC--CCCCEEECCCCCH Q ss_conf -------66315677665442013--4465020166520 Q gi|254780583|r 145 -------EDSYAEMFESLEKIKSF--SDKTHIYFGHEYT 174 (256) Q Consensus 145 -------~G~~~~l~~Sl~kl~~L--p~~t~i~pGHeYt 174 (256) ..+..++.++|++|..+ +.+ .|+|||--. T Consensus 192 ~~~~~i~~~~~~~~~~~L~~l~~l~l~~~-~I~PgHGpv 229 (402) T 1e5d_A 192 EYYANIVNPYAPQTLKAIETLVGAGVAPE-FICPDHGVI 229 (402) T ss_dssp HHHHHHTGGGHHHHHHHHHHHHHTTCCCS-EEEESSSCB T ss_pred HHHHHHCCCCHHHHHHHHHHHHHCCCCCC-EEEECCCCE T ss_conf 65654057639999999999986699813-896368430 No 32 >3esh_A Protein similar to metal-dependent hydrolase; structural genomics, PSI-2, protein structure initiative; 2.50A {Staphylococcus aureus subsp} Probab=99.84 E-value=2.7e-21 Score=157.32 Aligned_cols=154 Identities=20% Similarity=0.185 Sum_probs=104.0 Q ss_pred EEEEEEECCCCEEEEECCCCH-----------------HHHHHHHHHCCCC---EEEEEECCCCHHHHCHHHHHHH---H Q ss_conf 269999889984999869998-----------------9999999985996---4399985898433000001111---0 Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPDT-----------------YIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKK---F 71 (256) Q Consensus 15 y~YlI~d~~t~~~viIDpgd~-----------------~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~~~l~~---~ 71 (256) ++|||..+ +..++||+|-. ..+.+.|++.|+. |++|++||.|+||+||+..... + T Consensus 49 ~~~LI~~~--~~~iLiDtG~g~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~p~dId~VilTH~H~DH~Ggl~~~~~~~~~ 126 (280) T 3esh_A 49 HPILIQTA--QYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIF 126 (280) T ss_dssp CCEEEECS--SCEEESCCTTCSSCSCHHHHHHTTCSSCCCHHHHHHTTTCCTTSCCEEECSCCCHHHHGGGSCTTSCCSS T ss_pred EEEEEEEC--CEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCCCHHHCCCCCCC T ss_conf 89999929--9059996289962235532333577631069999998499979998997678966545880002475157 Q ss_pred CCCEEEECCCCCC---------C----------CCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECC--CCCCC Q ss_conf 0010120001234---------3----------2332203310100111122233102554456752268614--65431 Q gi|254780583|r 72 FNCTIFGPLEESS---------K----------IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN--DHFLC 130 (256) Q Consensus 72 ~~~~v~~~~~~~~---------~----------i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~--~~~lF 130 (256) +++.++..+.+.. + +......+.++..+.-| +++++|||||+||+||+++. ++++| T Consensus 127 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---i~vi~tPGHTpGh~~~~v~~~~~~vlf 203 (280) T 3esh_A 127 ENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEPVPG---IKMQHSGGHSFGHTIITIESQGDKAVH 203 (280) T ss_dssp TTCEEEEEHHHHHHHHSCCTTGGGTSCGGGCCGGGGGEEEESSEECSSTT---EEEEECCSSSTTCEEEEEEETTEEEEE T ss_pred CCCEEEECHHHHHHHCCCCHHHCCCCCCCCCCCCCCCEEECCCCEEECCC---CEEEECCCCCCCCEEEEEEECCCEEEE T ss_conf 87689950146422028231220232112344333523531488076488---679855998988889999959917999 Q ss_pred CCCEEEECCCCCC-----CCCCHHHHHHHHHHHHC--CCCCCEEECCCCC Q ss_conf 3770430461344-----66631567766544201--3446502016652 Q gi|254780583|r 131 VGDTLFSLGCGRI-----FEDSYAEMFESLEKIKS--FSDKTHIYFGHEY 173 (256) Q Consensus 131 tGDtLF~~g~Gr~-----~~G~~~~l~~Sl~kl~~--Lp~~t~i~pGHeY 173 (256) |||+++..+..+. +.-++.+..+|.+|+.. ..++.+|+|||+. T Consensus 204 ~GD~~~~~~~~~p~~~~~~d~d~~~a~~s~~~ll~~~~~~~~~v~~~H~~ 253 (280) T 3esh_A 204 MGDIFPTTAHKNPLWVTAYDDYPMQSIREKERMIPYFIQQQYWFLFYHDE 253 (280) T ss_dssp CGGGSCSGGGCSTTCCCTTCSCHHHHHHHHHHHHHHHHHTTCEEECSSCS T ss_pred EEECCCHHHCCCCCCEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCC T ss_conf 98243411026988355466899999999999999997489899997899 No 33 >2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine lactone, DI-nuclear zinc center, quorum quenching, AIIB, phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens} Probab=99.82 E-value=2.6e-20 Score=150.90 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=102.2 Q ss_pred EEEEEEECCCCEEEEECCCCH-------------------------HHHHHHHHHCCCC---EEEEEECCCCHHHHCHHH Q ss_conf 269999889984999869998-------------------------9999999985996---439998589843300000 Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPDT-------------------------YIISKMLREKGWF---LTHIFNTHHHIDHTRANL 66 (256) Q Consensus 15 y~YlI~d~~t~~~viIDpgd~-------------------------~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~~ 66 (256) ++|||..++ ..++||+|-. +.+.+.|++.|++ |++|++||.|+||+||+. T Consensus 44 ~~~LI~~~~--g~iLvDtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~G~~p~dI~~VilTH~H~DH~Ggl~ 121 (276) T 2r2d_A 44 SAYLIQCTD--ATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPDDISTVVLSHLHNDHAGCVE 121 (276) T ss_dssp EEEEEECSS--CEEEECCCSCTTCSSTTCSSCHHHHHHSCBCCCTTCSHHHHHHHTTCCGGGCSEEECSCCSTTTSTTGG T ss_pred EEEEEEECC--EEEEEECCCCHHHHCCCCCCCCHHHHCCCCCCCCHHHHHHHHHHCCCCHHHCCEEECCCCCCCCCCCCC T ss_conf 899999499--049995788845512433343022211554565320299999983999799989984799604237413 Q ss_pred HHHHHCCCEEEECCCCCCCC-----------CC----C----------CEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEE Q ss_conf 11110001012000123432-----------33----2----------20331010011112223310255445675226 Q gi|254780583|r 67 NLKKFFNCTIFGPLEESSKI-----------PG----I----------DHGLSDGDTFDFGSHPIKIIATPGHTIGHICY 121 (256) Q Consensus 67 ~l~~~~~~~v~~~~~~~~~i-----------~~----~----------~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~ 121 (256) .+ +++++|++..+.... +. + .....+.....+++-...++.+||||+||+|+ T Consensus 122 ~f---~~a~i~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~pGHTpGh~~~ 198 (276) T 2r2d_A 122 YF---GKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATPRNWDLVGRDERERELAPGVNLLNFGTGHASGMLGL 198 (276) T ss_dssp GC---SSSEEEEEHHHHHHHHHHHHTTCCSSSSCHHHHHHHTTSCCCEEEECTTCCEEEEETTEEEEEEESSSSSSEEEE T ss_pred CC---CCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCEEECCCCCEEEECCEEEEECCCCCCCCCEEE T ss_conf 57---863000389999986401234433453004554331044445655512688259709978866889987106899 Q ss_pred EEC---CCCCCCCCCEEEECC-CCC--C---CCCCHHHHHHHHHHHHCCC--CCCEEECCCCC Q ss_conf 861---465431377043046-134--4---6663156776654420134--46502016652 Q gi|254780583|r 122 HFM---NDHFLCVGDTLFSLG-CGR--I---FEDSYAEMFESLEKIKSFS--DKTHIYFGHEY 173 (256) Q Consensus 122 ~~~---~~~~lFtGDtLF~~g-~Gr--~---~~G~~~~l~~Sl~kl~~Lp--~~t~i~pGHeY 173 (256) ++. +..+||+||.++... ... . +..+..++.+|+++|+.|- .+..|+||||. T Consensus 199 ~v~~~~~~~vl~~GD~~~~~~~~~~~~~~~~~~~d~~~~~~sl~~l~~l~~~~~~~vipgHd~ 261 (276) T 2r2d_A 199 AVRLEKQPGFLLVSDACYTATNYGPPARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGHDR 261 (276) T ss_dssp EEECSSSCEEEEEETTSCCHHHHSSSCCCCSSCSCHHHHHHHHHHHHHHHHHTTCEEEESSCH T ss_pred EEEECCCCEEEEEECCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCH T ss_conf 999579997999958646175528988877666899999999999996633589889938498 No 34 >1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP} SCOP: d.157.1.5 Probab=99.81 E-value=1.8e-20 Score=151.92 Aligned_cols=156 Identities=19% Similarity=0.212 Sum_probs=103.2 Q ss_pred CEEEEEEECCCCEEEEECCCC-------HHHHHHHHHHCCCC---EEEEEECCCCHHHHCHHHHHHH--HCCCEEEECCC Q ss_conf 626999988998499986999-------89999999985996---4399985898433000001111--00010120001 Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD-------TYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKK--FFNCTIFGPLE 81 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd-------~~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~~~l~~--~~~~~v~~~~~ 81 (256) | +|||.+. +..++||+|- ...+.+.|++.|+. |++|++||.|.||+||+..+.+ .+++.++.+.. T Consensus 98 n-~~LI~~g--~~~iLIDtG~g~~~~~~~~~l~~~L~~~Gi~p~dId~VvlTH~H~DHiGGl~~~~~~~fp~a~~~~~~~ 174 (331) T 1p9e_A 98 T-GYLVNTG--SKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFPNAVVRADQK 174 (331) T ss_dssp E-EEEEECS--SCEEEECCCCTTSSCTTCCCHHHHHHHTTCCGGGCCEEECSCCCHHHHGGGEETTEESSTTCEEECBHH T ss_pred E-EEEEEEC--CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHCCEEEECCCCHHHHCCHHHHHHHHCCCCEEECCHH T ss_conf 9-9999989--988999899985666118899999998499989997999597970101413355664078723431467 Q ss_pred CCCCC---------CCC------C------EEEEEHHCCCCC-C-----CCCCCCCCCCCCCCCCEEEECC--CCCCCCC Q ss_conf 23432---------332------2------033101001111-2-----2233102554456752268614--6543137 Q gi|254780583|r 82 ESSKI---------PGI------D------HGLSDGDTFDFG-S-----HPIKIIATPGHTIGHICYHFMN--DHFLCVG 132 (256) Q Consensus 82 ~~~~i---------~~~------~------~~l~dgd~i~ig-~-----~~~~vi~tPGHT~g~i~~~~~~--~~~lFtG 132 (256) +.... +.. . ..+.+...+... + -.++++++||||+||++|++.. ++++|+| T Consensus 175 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ei~~Gi~vi~tpGHTpGh~~~~i~~~~~~~lf~G 254 (331) T 1p9e_A 175 EADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVPGIKALASHGHTPGHTTYVVESQGQKLALLG 254 (331) T ss_dssp HHHHHSCHHHHTTCSSTTSCHHHHHHHHHHHHHHHTTCBCCBCSSEECSTTEEEEECTTSSTTCEEEEEEETTEEEEECT T ss_pred HHHHHHCCHHHHCCCCCHHCCHHHHHHHHCCCCCCCCEEEEECCCCEECCCEEEEECCCCCCCCEEEEEECCCEEEEEEE T ss_conf 79987422001015420000114454441232000463785057402058648985589998767999961990899993 Q ss_pred CEEEECCC--CC-----CCCCCHHHHHHHHHHHHC--CCCCCEEECCCC Q ss_conf 70430461--34-----466631567766544201--344650201665 Q gi|254780583|r 133 DTLFSLGC--GR-----IFEDSYAEMFESLEKIKS--FSDKTHIYFGHE 172 (256) Q Consensus 133 DtLF~~g~--Gr-----~~~G~~~~l~~Sl~kl~~--Lp~~t~i~pGHe 172 (256) |+++...+ .+ -|.-++++-..|-++++. -.++++|+++|. T Consensus 255 D~i~~~~~~~~~p~~~~~~D~D~~~a~~tR~~ll~~~a~~~~lv~~~H~ 303 (331) T 1p9e_A 255 DLILVAAVQFDDPSVTTQLDSDSKSVAVERKKAFADAAKGGYLIAASHL 303 (331) T ss_dssp TSCCCHHHHTTCTTCCBTTCSSHHHHHHHHHHHHHHHHHHTCEEECTTS T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC T ss_conf 7344675333799860257769999999999999986049929999789 No 35 >1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein structure initiative, joint center for structural genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima} SCOP: d.157.1.11 Probab=99.81 E-value=1.1e-19 Score=146.79 Aligned_cols=148 Identities=17% Similarity=0.191 Sum_probs=102.8 Q ss_pred EEEEEECCCCEEEEECCCC---HHHHHHHHHHCCCC---EEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCC--- Q ss_conf 6999988998499986999---89999999985996---43999858984330000011110001012000123432--- Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPD---TYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI--- 86 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpgd---~~~i~~~l~~~~~~---i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i--- 86 (256) +|+|..+ ++.++||||. .+.+.+.+++.+++ |++|++||.|+||+||+..+.+. .++.+....... T Consensus 37 ~~li~~~--~~~iLIDtG~~~~~~~l~~~l~~~g~~~~~I~~Ii~TH~H~DH~gg~~~~~~~---~~~~~~~~~~~~~~~ 111 (221) T 1ztc_A 37 VVYLEHK--DRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFENA---TFYVHEVYKTKNYLS 111 (221) T ss_dssp EEEEEET--TEEEEECCCCGGGHHHHHHHHHHHTCCGGGCCEEECSCCCHHHHGGGGGCTTC---EEEEEGGGGGSCGGG T ss_pred EEEEEEC--CEEEEEECCCCCCHHHHHHHHHHCCCCHHHCCEEEECCCCCCCCCCHHHCCCC---CEEEEECHHHHHCCC T ss_conf 9999989--99999919997219999999998499968984999599872444541210465---055410002221012 Q ss_pred --------------CCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECCC---CCCCCCCEEEECCCCC--CCCCC Q ss_conf --------------3322033101001111222331025544567522686146---5431377043046134--46663 Q gi|254780583|r 87 --------------PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND---HFLCVGDTLFSLGCGR--IFEDS 147 (256) Q Consensus 87 --------------~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~~---~~lFtGDtLF~~g~Gr--~~~G~ 147 (256) ......+.+ +...+++..++++.+||||+||++++++.+ ++|||||++|...... ..+.+ T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gHt~~~~~~~~~~~~~~~iLf~GD~~~~~~~~~~~~~~~~ 190 (221) T 1ztc_A 112 FGTIVGRIYSKVISSWKNVVLLK-GEESLFDEKVKVFHTPWHAREHLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYG 190 (221) T ss_dssp GCHHHHHHHHHHHHTCCSEEEEC-SCCEETTTTEEEEECCSSSTTCEEEEEEETTTEEEEECGGGSCSHHHHHHHHHTCS T ss_pred CCCCCCCCCCCCCCCCCEEEEEC-CCEEEECEEEEECCCCCCCHHHEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCC T ss_conf 22211001223455542289706-84376020577247899883477689955899639997567898767745799878 Q ss_pred HHHHHHHHHHHHCCCCCCEEECCCC Q ss_conf 1567766544201344650201665 Q gi|254780583|r 148 YAEMFESLEKIKSFSDKTHIYFGHE 172 (256) Q Consensus 148 ~~~l~~Sl~kl~~Lp~~t~i~pGHe 172 (256) .++..++|+|+..+ + +|+|||+ T Consensus 191 ~~~~~~~l~~i~~~--d-~ivpgH~ 212 (221) T 1ztc_A 191 SVQVKNFLDRVGRI--D-LLVFPHD 212 (221) T ss_dssp CHHHHHHHHHHCCC--S-EEECSSS T ss_pred HHHHHHHHHHHHCC--C-EEEECCC T ss_conf 99999999876449--9-9991989 No 36 >3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease, exoribonuclease, metallo-beta-lactamase; HET: U5P; 2.10A {Thermus thermophilus HB27} PDB: 3bk1_A* Probab=99.44 E-value=1.6e-13 Score=106.89 Aligned_cols=134 Identities=13% Similarity=0.048 Sum_probs=98.9 Q ss_pred CCCEE-EEEEECC---CEEEEEEECCCCEEEEECCCC----HH--------HHHHHHHHCCCCEEEEEECCCCHHHHCHH Q ss_conf 86145-3011057---626999988998499986999----89--------99999998599643999858984330000 Q gi|254780583|r 2 TSLNI-AISLYHD---NFCILIHNHKYRLTAAIDAPD----TY--------IISKMLREKGWFLTHIFNTHHHIDHTRAN 65 (256) Q Consensus 2 ~~~~i-~ip~~~D---Ny~YlI~d~~t~~~viIDpgd----~~--------~i~~~l~~~~~~i~~Il~TH~H~DHigg~ 65 (256) ..+.| |+.-... | +|++..+ +..++||.|- .+ +=..+++++.-++++|++||.|.||+|++ T Consensus 15 ~~i~i~pLGG~~EIG~n-~~~~e~~--~~~iliD~G~~f~~~~~~gid~iiPd~~~l~~~~~~i~ai~lTHaH~DH~Gal 91 (562) T 3bk2_A 15 DHVEIIPLGGMGEIGKN-ITVFRFR--DEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIEHRHKIKAWVLTHGHEDHIGGL 91 (562) T ss_dssp CCEEEEEEESBSBSSCC-EEEEEET--TEEEEECCCCBCCCTTSTTCCEEEECCHHHHHTGGGEEEEECCCCCHHHHTTH T ss_pred CEEEEEECCCCCHHHHC-EEEEEEC--CEEEEEECCCCCCCCCCCCCCEEECCCHHHHHCCCCCEEEEECCCCHHHHCCH T ss_conf 82899966888904516-7999999--95999958999897568897589369689873766725999799855653772 Q ss_pred HHHHH-----HCCCEEEECCCCCCCC---------CC---CCEEEEEHHCCCCCC-CCCCCCCCCCCCCCCCEEEEC--C Q ss_conf 01111-----0001012000123432---------33---220331010011112-223310255445675226861--4 Q gi|254780583|r 66 LNLKK-----FFNCTIFGPLEESSKI---------PG---IDHGLSDGDTFDFGS-HPIKIIATPGHTIGHICYHFM--N 125 (256) Q Consensus 66 ~~l~~-----~~~~~v~~~~~~~~~i---------~~---~~~~l~dgd~i~ig~-~~~~vi~tPGHT~g~i~~~~~--~ 125 (256) +.|.. .+++|||+.+.....+ .. ....+..++.+.+|+ ++++++.+.+|.||+..++++ + T Consensus 92 p~Ll~~~~~~~~~~PIY~T~~T~~Ll~~kl~e~~~~~~~~~~~~i~~~~~~~~g~~f~v~~~~v~hsipga~~~~i~t~~ 171 (562) T 3bk2_A 92 PFLLPMIFGKESPVPIYGARLTLGLLRGKLEEFGLRPGAFNLKEISPDDRIQVGRYFTLDLFRMTHSIPDNSGVVIRTPI 171 (562) T ss_dssp HHHHHHHHCSCCCSEEEEEHHHHHHHHHHHHHTTCCSTTSEEEEECTTCEEEETTTEEEEEEECCCSSSSCEEEEEEETT T ss_pred HHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEEEEEEEEEECCCCCCCCEEEEEEECC T ss_conf 87887521456885888799999999999997299855553147369965998211899988536777764699998299 Q ss_pred CCCCCCCCEEEEC Q ss_conf 6543137704304 Q gi|254780583|r 126 DHFLCVGDTLFSL 138 (256) Q Consensus 126 ~~~lFtGDtLF~~ 138 (256) ..++||||.-|.+ T Consensus 172 g~IlyTGDfr~~~ 184 (562) T 3bk2_A 172 GTIVHTGDFKLDP 184 (562) T ss_dssp EEEEECCSCCCCS T ss_pred EEEEEEECCCCCC T ss_conf 7899982555777 No 37 >2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II; 2.10A {Thermoanaerobacter tengcongensis MB4} Probab=99.39 E-value=3.5e-12 Score=98.28 Aligned_cols=64 Identities=19% Similarity=0.171 Sum_probs=51.3 Q ss_pred EEEEEECCCCEEEEECCCCHHHHHHHHHHCCC---CEEEEEECCCCHHHHCHHHHHHH-HCCCEEEECCC Q ss_conf 69999889984999869998999999998599---64399985898433000001111-00010120001 Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDTYIISKMLREKGW---FLTHIFNTHHHIDHTRANLNLKK-FFNCTIFGPLE 81 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~---~i~~Il~TH~H~DHigg~~~l~~-~~~~~v~~~~~ 81 (256) ||||..+ +..++||+|....+++.+++.++ +|++|++||.|.||+||+..+.+ .+.++++++.. T Consensus 35 S~LIe~~--~~~iLID~G~~~~~~~~l~~~gi~~~~Id~I~iTH~H~DHigGL~~ll~~~~~~~~~~~~~ 102 (284) T 2p4z_A 35 SLLLKKG--NKEIVVDTGQSENFIKNCGLMGIDVGRIKKVVLTHGHYDHIGGLKGLLERNPEVKIYTHKE 102 (284) T ss_dssp EEEEEET--TEEEEECCCSSTHHHHHHHHTTCCGGGCCEEECCCSCHHHHTTHHHHHHHCTTCEEEEEGG T ss_pred EEEEEEC--CEEEEEECCCCHHHHHHHHHCCCCHHHCCEEEECCCCHHHCCCCHHHHHHCCCCCCCCCHH T ss_conf 9999989--9689990799979999999849997899899974643543177667886455665444765 No 38 >2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding protein; PCE, hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A* Probab=99.29 E-value=1.8e-11 Score=93.72 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=95.9 Q ss_pred EEEEEECCCCEEEEECCCC--------------------------HHHHHHHHHHCCC-CEEEEEECCCCHHHHCHHHHH Q ss_conf 6999988998499986999--------------------------8999999998599-643999858984330000011 Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPD--------------------------TYIISKMLREKGW-FLTHIFNTHHHIDHTRANLNL 68 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpgd--------------------------~~~i~~~l~~~~~-~i~~Il~TH~H~DHigg~~~l 68 (256) +.||.. .+..++||.|. .+.++.+|++.++ +|+++++||.|.||++|+..| T Consensus 20 aili~~--~g~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~ID~vIiTH~H~DHigGl~~l 97 (547) T 2bib_A 20 AIILES--NGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDEL 97 (547) T ss_dssp EEEEEE--TTEEEEEECCCCSCCCCSSSTTSCCCTTCCCCGGGCCHHHHHHHHHHTTCCCBSCEECCCSCHHHHTTHHHH T ss_pred EEEEEE--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHCCHHHH T ss_conf 999999--999999989998656643222222222345543321267889989875989379999999960576979999 Q ss_pred HHHCC-CEEEECCCCCCCCCC-------------------------CCEEEEEHHCCCCCCCCCCCCC------------ Q ss_conf 11000-101200012343233-------------------------2203310100111122233102------------ Q gi|254780583|r 69 KKFFN-CTIFGPLEESSKIPG-------------------------IDHGLSDGDTFDFGSHPIKIIA------------ 110 (256) Q Consensus 69 ~~~~~-~~v~~~~~~~~~i~~-------------------------~~~~l~dgd~i~ig~~~~~vi~------------ 110 (256) .+.+. ..|+.+......... .......+..+.+++..++++. T Consensus 98 l~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (547) T 2bib_A 98 LSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYENETDSSGELK 177 (547) T ss_dssp HHHSCBSEEECCCCCGGGBSCGGGCTTHHHHHHHHHHHHHHTTCEEECSCCTTTTEEEETTEEEEEESCSCCBCTTSCBC T ss_pred HHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCEEEEEECCCCCCCCCCCCC T ss_conf 96587878997997522221001234447999999999987499742212579817970881699936754554433344 Q ss_pred -CCCCCCCCCEEEEC--CCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCC-CC-HHHHHHHHHHCC Q ss_conf -55445675226861--46543137704304613446663156776654420134465020166-52-045889877502 Q gi|254780583|r 111 -TPGHTIGHICYHFM--NDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGH-EY-TENNAYFALSCD 185 (256) Q Consensus 111 -tPGHT~g~i~~~~~--~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGH-eY-t~~nl~Fa~~~~ 185 (256) +++|...|+++++. +.++|||||.= .. .-.++.. .-..++-|.+..|.| -- +-+.-.|...+. T Consensus 178 ~~~~~N~~Sivl~i~~~g~~~LftGD~~---~~------~e~~ll~---~~~~~~~DvLkv~~HHGS~~s~s~~fl~~v~ 245 (547) T 2bib_A 178 KIWDDNSNSLISVVKVNGKKIYLGGDLD---NV------HGAEDKY---GPLIGKVDLMKFNHHHDTNKSNTKDFIKNLS 245 (547) T ss_dssp CBSSGGGGCCEEEEEETTEEEEECTTCC---ST------TSHHHHH---HHHHCCCSEEECTTTTBCSSSSCHHHHHHHC T ss_pred CCCCCCCCCEEEEEEECCEEEEEEECCC---HH------HHHHHHH---CCCCCCEEEEECCCCCCCCCCCCHHHHHHCC T ss_conf 5789887768999999999999997898---05------6799864---6888854699968988988676798997549 Q ss_pred CCCH Q ss_conf 3447 Q gi|254780583|r 186 PHNL 189 (256) Q Consensus 186 p~n~ 189 (256) |..- T Consensus 246 P~~~ 249 (547) T 2bib_A 246 PSLI 249 (547) T ss_dssp CSEE T ss_pred CCEE T ss_conf 9799 No 39 >3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A* Probab=99.26 E-value=1.7e-11 Score=93.78 Aligned_cols=130 Identities=20% Similarity=0.316 Sum_probs=86.4 Q ss_pred CCEE-EEEEECC--CEEEEEEECCCCEEEEECCCC-------HH--------HHHHHHHHCCCCEEEEEECCCCHHHHCH Q ss_conf 6145-3011057--626999988998499986999-------89--------9999999859964399985898433000 Q gi|254780583|r 3 SLNI-AISLYHD--NFCILIHNHKYRLTAAIDAPD-------TY--------IISKMLREKGWFLTHIFNTHHHIDHTRA 64 (256) Q Consensus 3 ~~~i-~ip~~~D--Ny~YlI~d~~t~~~viIDpgd-------~~--------~i~~~l~~~~~~i~~Il~TH~H~DHigg 64 (256) ++.| ++..+.. ..+|+|..+. .-+++|.|- .. +-..++.+. -++++|++||.|.||+|+ T Consensus 188 ~vrit~LGG~~EIGrs~~lv~~~~--~~ILlDcG~~~~~~~~~~~~~p~~~~p~~~~l~~~-~~idAVlITHaH~DHiG~ 264 (651) T 3af5_A 188 WIRITGLGGFREVGRSALLVQTDE--SFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLRE-GLLDAIIITHAHLDHCGM 264 (651) T ss_dssp CEEEEEEECSSSSSCCEEEEEESS--CEEEECCCCCGGGTTCHHHHSCCTTCHHHHHHHHT-TCCCEEECSCSSHHHHTT T ss_pred CEEEEEECCCCCCCCCEEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCEEEECCCCHHHHCC T ss_conf 279999368886246679999679--68999899885656673113677677652123675-655689978898788686 Q ss_pred HHHHHHH--CCCEEEECCCCCCCC-----------------C-----------CCCEEEEEHHCCCCC-CCCCCCCCCCC Q ss_conf 0011110--001012000123432-----------------3-----------322033101001111-22233102554 Q gi|254780583|r 65 NLNLKKF--FNCTIFGPLEESSKI-----------------P-----------GIDHGLSDGDTFDFG-SHPIKIIATPG 113 (256) Q Consensus 65 ~~~l~~~--~~~~v~~~~~~~~~i-----------------~-----------~~~~~l~dgd~i~ig-~~~~~vi~tPG 113 (256) ++.|.++ +++|||+........ + .....++-|+.++++ ++.++++. -| T Consensus 265 LP~L~~~g~~~~PIY~T~~T~~L~~~~~~d~~~i~~~~~~~~~y~~~di~~~~~~~~~l~yge~~~i~pd~~it~~~-aG 343 (651) T 3af5_A 265 LPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHN-AG 343 (651) T ss_dssp HHHHHHTTCCCSCEEECHHHHHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEE-CS T ss_pred HHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCEEECCCCEEEECCCEEEEECC-CC T ss_conf 88999737888877667899999999999999987611677778999999998541995799849807987998656-89 Q ss_pred CCCCCCEEEEC--C--CCCCCCCCEEE Q ss_conf 45675226861--4--65431377043 Q gi|254780583|r 114 HTIGHICYHFM--N--DHFLCVGDTLF 136 (256) Q Consensus 114 HT~g~i~~~~~--~--~~~lFtGDtLF 136 (256) |+.|+.++++. + .+++||||.=| T Consensus 344 H~lGsa~~~i~i~~~~~~IvyTGDfk~ 370 (651) T 3af5_A 344 HILGSAIVHLHIGNGLHNIAITGDFKF 370 (651) T ss_dssp SSTTCEEEEEEETTTTTCEEECCSCCC T ss_pred CCCCCCEEEEEECCCCEEEEECCCCCC T ss_conf 887030899995688668997778788 No 40 >2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit; metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10 PDB: 2i7v_A Probab=99.24 E-value=3e-12 Score=98.66 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=84.3 Q ss_pred CEE-EEEEECC---CEEEEEEECCCCEEEEECCCC-----HHHHHHHHHHCC-CCEEEEEECCCCHHHHCHHHHHHHH-- Q ss_conf 145-3011057---626999988998499986999-----899999999859-9643999858984330000011110-- Q gi|254780583|r 4 LNI-AISLYHD---NFCILIHNHKYRLTAAIDAPD-----TYIISKMLREKG-WFLTHIFNTHHHIDHTRANLNLKKF-- 71 (256) Q Consensus 4 ~~i-~ip~~~D---Ny~YlI~d~~t~~~viIDpgd-----~~~i~~~l~~~~-~~i~~Il~TH~H~DHigg~~~l~~~-- 71 (256) |.| |+.-... | +|+|..+ +..++||.|- .......+.... -++++|++||.|.||+||++.|... T Consensus 12 ~~i~~LGG~~eiG~s-c~lv~~~--~~~illDcG~~~~~~~~~~~p~~~~~~~~~idai~lTH~H~DH~g~Lp~l~~~~~ 88 (459) T 2i7t_A 12 LLIRPLGAGQEVGRS-CIILEFK--GRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKTS 88 (459) T ss_dssp EEEEEEESSSSSSSC-EEEEEET--TEEEEECCCCCTTSCGGGGSCCGGGSCGGGCCEEECCCSSHHHHTTHHHHHHHSS T ss_pred EEEEECCCCCCCCCC-EEEEEEC--CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHCCHHHHHHHCC T ss_conf 999982689864568-9999989--9299995889988652002677666782229999989785887692799998648 Q ss_pred CCCEEEECCCCCCCCC----------------------------CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEE Q ss_conf 0010120001234323----------------------------322033101001111222331025544567522686 Q gi|254780583|r 72 FNCTIFGPLEESSKIP----------------------------GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHF 123 (256) Q Consensus 72 ~~~~v~~~~~~~~~i~----------------------------~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~ 123 (256) ++++||++......+. .....+.-++...+++..++++.+ ||++|+..+.+ T Consensus 89 ~~~piy~t~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~a-gH~~g~~~~~i 167 (459) T 2i7t_A 89 FKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDKIETINFHEVKEVAGIKFWCYHA-GHVLGAAMFMI 167 (459) T ss_dssp CCSEEEEEHHHHHHHHHHHHHHCC---------CCCHHHHHHHGGGEEEECTTCCEEETTEEEEEEEC-CSSTTCEEEEE T ss_pred CCCCEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCEEEECCCCEEEECCEEEEEEEC-CCCCCCEEEEE T ss_conf 99988831527999998889877541034323567799999776245870799568608759999844-77678579999 Q ss_pred C--CCCCCCCCCEEE Q ss_conf 1--465431377043 Q gi|254780583|r 124 M--NDHFLCVGDTLF 136 (256) Q Consensus 124 ~--~~~~lFtGDtLF 136 (256) + +..+++|||+=+ T Consensus 168 ~~~~~~i~ytGD~~~ 182 (459) T 2i7t_A 168 EIAGVKLLYTGDFSR 182 (459) T ss_dssp EETTEEEEECCSCCC T ss_pred EECCEEEEECCCCCC T ss_conf 989998885588677 No 41 >2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP: d.157.1.10 Probab=99.22 E-value=4.6e-12 Score=97.47 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=83.6 Q ss_pred CEEEEEEECCCCEEEEECCCC--------H-HHHHHHH-----------------------HHCCCCEEEEEECCCCHHH Q ss_conf 626999988998499986999--------8-9999999-----------------------9859964399985898433 Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPD--------T-YIISKML-----------------------REKGWFLTHIFNTHHHIDH 61 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd--------~-~~i~~~l-----------------------~~~~~~i~~Il~TH~H~DH 61 (256) | +++|..++ ..+++|.|- . +.+.... ++..-++++|++||.|.|| T Consensus 21 ~-~~~i~~~~--~~illD~G~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~ai~iTH~H~DH 97 (429) T 2az4_A 21 T-VIEVAYKD--AHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDH 97 (429) T ss_dssp C-EEEEEETT--EEEEECCCCCCCTTCCCSCCCHHHHHHTTSSCCCSSCBCGGGCCCCCSSCCCCCSEEEEECSCSCHHH T ss_pred C-EEEEEECC--EEEEEECCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHH T ss_conf 3-89999999--08999479997765567541100011123466543333554211100122465666589989871726 Q ss_pred HCHHHHHHHHCCCEEEECCCCCCCC--------------------CCCCEEEEEHHCCCCCCCCCCCCCCCCC-CCCCCE Q ss_conf 0000011110001012000123432--------------------3322033101001111222331025544-567522 Q gi|254780583|r 62 TRANLNLKKFFNCTIFGPLEESSKI--------------------PGIDHGLSDGDTFDFGSHPIKIIATPGH-TIGHIC 120 (256) Q Consensus 62 igg~~~l~~~~~~~v~~~~~~~~~i--------------------~~~~~~l~dgd~i~ig~~~~~vi~tPGH-T~g~i~ 120 (256) +|+.+.+.. +++||++.....-+ ..--+.++.++.+++|+++++++.+. | .+|+.+ T Consensus 98 ~g~l~~l~~--~~piy~~~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~-Hsi~gs~~ 174 (429) T 2az4_A 98 SRMINYLDP--AVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVD-HDAYGASA 174 (429) T ss_dssp HTTGGGBCT--TSCEEEEHHHHHHHHHHTTTSCSSCCCTTSCTTCCCCCEEECTTCEEEETTEEEEEEECC-CSSTTCEE T ss_pred HCCHHHHHH--CCCEEECHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEECCCCEEEECCEEEEEEECC-CCCCCCEE T ss_conf 585256761--697652799999999987640001234022215543159958999699777799998566-78887548 Q ss_pred EEEC--CCCCCCCCCEEEEC Q ss_conf 6861--46543137704304 Q gi|254780583|r 121 YHFM--NDHFLCVGDTLFSL 138 (256) Q Consensus 121 ~~~~--~~~~lFtGDtLF~~ 138 (256) |.++ +..++||||+-|.+ T Consensus 175 ~~i~~~~~~i~ytGD~~~~~ 194 (429) T 2az4_A 175 LLIRTPDHFITYTGDLRLHG 194 (429) T ss_dssp EEEEETTEEEEECCSCCSSS T ss_pred EEEECCCCEEEECCCEEECC T ss_conf 99824674588546513158 No 42 >1zkp_A Hypothetical protein BA1088; zinc binding protein, structural genomics, PSI, protein structure initiative; 1.50A {Bacillus anthracis str} SCOP: d.157.1.9 Probab=99.17 E-value=4.8e-11 Score=90.86 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=81.2 Q ss_pred EEEEEECCCCEEEEECCCCHHHHHHHHHHC-C-CCEEEEEECCCCHHHHCHHHHHHHH-----------CCCEEEECCCC Q ss_conf 699998899849998699989999999985-9-9643999858984330000011110-----------00101200012 Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDTYIISKMLREK-G-WFLTHIFNTHHHIDHTRANLNLKKF-----------FNCTIFGPLEE 82 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpgd~~~i~~~l~~~-~-~~i~~Il~TH~H~DHigg~~~l~~~-----------~~~~v~~~~~~ 82 (256) +|||..+ +..++||+|.. +...+++. + -+|++|++||.|.||++|+..|... ...++|++... T Consensus 45 ~~Li~~~--~~~iLiD~G~g--~~~~l~~~~~~~~id~I~iTH~H~DH~~gl~~l~~~~~~~~~~~~~~~~l~i~~~~~~ 120 (268) T 1zkp_A 45 GYLFEHD--GFRLLVDCGSG--VLAQLQKYITPSDIDAVVLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFD 120 (268) T ss_dssp EEEEEET--TEEEEECCCTT--HHHHHTTTCCGGGCCEEECSCCCHHHHTTHHHHHHHHHHHHHHHCCCCCEEEEECSSS T ss_pred EEEEEEC--CCEEEEECCHH--HHHHHHHCCCHHHCCEEEEECCCHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECHHH T ss_conf 7999999--92899959767--9999985498524979999279603333448887654202333356774458833667 Q ss_pred CCCCC-------CCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEEC--CCCCCCCCCEEEE Q ss_conf 34323-------3220331010011112223310255445675226861--4654313770430 Q gi|254780583|r 83 SSKIP-------GIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFM--NDHFLCVGDTLFS 137 (256) Q Consensus 83 ~~~i~-------~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~--~~~~lFtGDtLF~ 137 (256) ...+. .....+.++..+.+|+++++.+.++ |..+++.|.+. +.+++|+|||-+. T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~v~~~~~~-H~~~~~g~~i~~~~~~i~ysgDt~~~ 183 (268) T 1zkp_A 121 ENGFHSLTHEPHTKGIPYNPEETLQIGPFSISFLKTV-HPVTCFAMRITAGNDIVVYSADSSYI 183 (268) T ss_dssp HHHHHTTCBTTTEEEEECCTTSCEEETTEEEEEEECC-SSSCCEEEEEEETTEEEEECCSCCCC T ss_pred HHHHHHHHHHCCCCEEECCCCCEEEEEEEEEEEECCC-CCCCCCEEEEECCCCEEEECCCCCCC T ss_conf 8899876542255337706875598412899740377-77874134774279779988889988 No 43 >3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate utilization, alkylphosphonate uptake; 1.40A {Escherichia coli} Probab=99.15 E-value=2.5e-10 Score=86.29 Aligned_cols=161 Identities=14% Similarity=0.093 Sum_probs=98.1 Q ss_pred CEEEEEEECCCCEEEEECCCCHHHHHHHHHHCC-CCEEEEEECCCCHHHHCHHHHHHH--HCCCEEEECCCCCCC----- Q ss_conf 626999988998499986999899999999859-964399985898433000001111--000101200012343----- Q gi|254780583|r 14 NFCILIHNHKYRLTAAIDAPDTYIISKMLREKG-WFLTHIFNTHHHIDHTRANLNLKK--FFNCTIFGPLEESSK----- 85 (256) Q Consensus 14 Ny~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~-~~i~~Il~TH~H~DHigg~~~l~~--~~~~~v~~~~~~~~~----- 85 (256) +-|++|..+ +..++||+|.... +.+.. -++++|++||.|.||++|+..+.. ....+||++...... T Consensus 39 ~ss~li~~~--~~~iLiD~G~~~~----~~~~~~~~id~I~iTH~H~DH~~GL~~l~~~~~~~i~iy~~~~~~~~~~~~~ 112 (258) T 3g1p_A 39 PCSGVVKFN--DAITLIDAGLHDL----ADRWSPGSFQQFLLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDEQGCDDLFK 112 (258) T ss_dssp BSEEEEEET--TEEEEECCCCTTH----HHHCCTTSSCEEECSCCCHHHHGGGTTTTTCSSSCEEEEECCCSSCSTTTTT T ss_pred EEEEEEEEC--CEEEEEECCHHHH----HHCCCCCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCEEECCCCCCHHHHHC T ss_conf 349999989--9789998999999----8668985887999816741024462455442257853895441120224422 Q ss_pred ---CCCCCEEEEEHHCCCCCCCCCCCCCCCCCCCCCCEEEECC--CCCCCCCCEEEECCCCCCCCCCHHHHHHH-HHHH- Q ss_conf ---2332203310100111122233102554456752268614--65431377043046134466631567766-5442- Q gi|254780583|r 86 ---IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN--DHFLCVGDTLFSLGCGRIFEDSYAEMFES-LEKI- 158 (256) Q Consensus 86 ---i~~~~~~l~dgd~i~ig~~~~~vi~tPGHT~g~i~~~~~~--~~~lFtGDtLF~~g~Gr~~~G~~~~l~~S-l~kl- 158 (256) .......++.++.+++++.+++.+.++ |...++.|.++. .+++|+|||-. +.+...+.+... ++-+ T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~g~~i~~~~~~i~y~gDt~~------~~~~~~~~l~~~~~d~li 185 (258) T 3g1p_A 113 HPGLLDFSHTVEPFVVFDLQGLQVTPLPLN-HSKLTFGYLLETAHSRVAWLSDTAG------LPEKTLKFLRNNQPQVMV 185 (258) T ss_dssp SCTTEEEEEECCTTCCEEETTEEEEEEECC-SSSCCEEEEEECSSCEEEEECSCSS------CCHHHHHHHHHTCCSEEE T ss_pred CCCCCCCCCCCCCCEEEECCCEEEECCCCC-CCCCCEEEEEECCCEEEEECCCCCC------CCHHHHHHHCCCCCCEEE T ss_conf 566543212356636885052441313247-8987549999629826998486788------898999996189988999 Q ss_pred --HCCCCCCEEECCCCCHHHHHHHHHHCCCC Q ss_conf --01344650201665204588987750234 Q gi|254780583|r 159 --KSFSDKTHIYFGHEYTENNAYFALSCDPH 187 (256) Q Consensus 159 --~~Lp~~t~i~pGHeYt~~nl~Fa~~~~p~ 187 (256) ...++...-.++|-.....++++..+.|. T Consensus 186 ~d~~~~~~~~~~~~H~~~~ea~~~~~~~~~k 216 (258) T 3g1p_A 186 MDCSHPPRADAPRNHCDLNTVLALNQVIRSP 216 (258) T ss_dssp EECCBSSCSSCCSSSCBHHHHHHHHHHHCCS T ss_pred ECCCCCCCCCCCCCCCCHHHHHHHHHHCCCC T ss_conf 5487762237999998999999999971989 No 44 >2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei} Probab=99.08 E-value=2.6e-11 Score=92.65 Aligned_cols=132 Identities=17% Similarity=0.216 Sum_probs=83.5 Q ss_pred CCEE-EEEEECC--CEEEEEEECCCCEEEEECCCCH----HH-HHH-HHHH-CC-CCEEEEEECCCCHHHHCHHHHHHH- Q ss_conf 6145-3011057--6269999889984999869998----99-999-9998-59-964399985898433000001111- Q gi|254780583|r 3 SLNI-AISLYHD--NFCILIHNHKYRLTAAIDAPDT----YI-ISK-MLRE-KG-WFLTHIFNTHHHIDHTRANLNLKK- 70 (256) Q Consensus 3 ~~~i-~ip~~~D--Ny~YlI~d~~t~~~viIDpgd~----~~-i~~-~l~~-~~-~~i~~Il~TH~H~DHigg~~~l~~- 70 (256) ++.| ++..+.. -.||+|..++ ..+++|.|-. +. ... ++.+ .. -++++|++||.|.||+|+++.|.+ T Consensus 183 ~irit~LGG~~EIGrsc~lv~~~~--~~ILlDcG~~~~~~~~~~~~~~~p~~~~l~~iDAV~LTHaH~DH~G~Lp~L~k~ 260 (640) T 2xr1_A 183 WVRVTALGGCKEVGRSCFLLSTPE--SRILIDCGVNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLLFKY 260 (640) T ss_dssp CCEEEEEECSSSSBCCEEEEECSS--CEEEECCCCBCSSCSSCCCCTTSTTTCSGGGCCEEECCSSCHHHHTTHHHHHHT T ss_pred EEEEEEECCCCCCCCCEEEEEECC--CEEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCEEEECCCCHHHHCCHHHHHHC T ss_conf 089999478886152779999689--699998888878523357443557768730188999888976763865999852 Q ss_pred HCCCEEEECCCCCCCC------------------C----------CCCEEEEEHHCCCCC-CCCCCCCCCCCCCCCCCEE Q ss_conf 0001012000123432------------------3----------322033101001111-2223310255445675226 Q gi|254780583|r 71 FFNCTIFGPLEESSKI------------------P----------GIDHGLSDGDTFDFG-SHPIKIIATPGHTIGHICY 121 (256) Q Consensus 71 ~~~~~v~~~~~~~~~i------------------~----------~~~~~l~dgd~i~ig-~~~~~vi~tPGHT~g~i~~ 121 (256) .+++|||+.......+ + ...+.+.-|+.+.++ +++++.+.+ ||++|+.+. T Consensus 261 g~~~PIY~T~~T~~L~~~ll~d~~~~~~~~~~~~~y~~~~i~~~~~~~i~l~y~e~~~i~~di~Vt~~~a-GHslGsA~~ 339 (640) T 2xr1_A 261 GYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTLKHTIPLDYEEVTDIAPDIKLTFHNA-GHILGSAIS 339 (640) T ss_dssp TCCSCEEECHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHTEEECCTTCCEEEETTEEEEEEEC-SSSTTCEEE T ss_pred CCCCCEEECHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHEEECCCCCEEEECCCCEEEEEEC-CCCCCCCCE T ss_conf 8998899777999999999999998766423468878899998885068558997699579717999726-877865005 Q ss_pred EE--C--CCCCCCCCCEEEE Q ss_conf 86--1--4654313770430 Q gi|254780583|r 122 HF--M--NDHFLCVGDTLFS 137 (256) Q Consensus 122 ~~--~--~~~~lFtGDtLF~ 137 (256) ++ . ..+++||||.-|. T Consensus 340 ~~~I~~g~~~IvyTGDfr~~ 359 (640) T 2xr1_A 340 HFHIGDGLHNVVFTGDYKYE 359 (640) T ss_dssp EEEETTTTEEEEECCSCCSS T ss_pred EEEEEECCEEEEECCCCCCC T ss_conf 78995088269973785667 No 45 >2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J recombination, double-strand break repair; 2.50A {Saccharomyces cerevisiae} SCOP: d.157.1.10 Probab=99.04 E-value=2.8e-10 Score=85.96 Aligned_cols=117 Identities=12% Similarity=-0.003 Sum_probs=78.0 Q ss_pred EEEEEEECCCCEEEEECCCC------HHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHH------CCCEEEECCCC Q ss_conf 26999988998499986999------8999999998599643999858984330000011110------00101200012 Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPD------TYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF------FNCTIFGPLEE 82 (256) Q Consensus 15 y~YlI~d~~t~~~viIDpgd------~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~------~~~~v~~~~~~ 82 (256) -|||+.-+ +..+++|+|- .....+++++.--+|++||+||.|.||+|+++.|.+. +.+|||+.... T Consensus 16 ~c~lL~~d--~~~ILlDcG~~~~~~~~~~~~~~~~~~~~~IDaVllSHah~DH~GaLP~L~~~~~~~~g~~~pIYaT~pt 93 (717) T 2i7x_A 16 VGSVVRFD--NVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYATLPV 93 (717) T ss_dssp CCEEEEET--TEEEEECCCCCTTTSCHHHHHHHHHTTGGGCCEEECCCSSHHHHTTHHHHHHHSHHHHHHTCEEEEEHHH T ss_pred EEEEEEEC--CEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCEEEECCCCHHHHCCHHHHHHHCCCCCCCCCCEEECHHH T ss_conf 38999989--9799998998877677445002211265658789977898677546689998513236988889966899 Q ss_pred CCC-------------------CC-----CC------CEEEEEHHCCCCC----CCCCCCCCCCCCCCCCCEEEEC--CC Q ss_conf 343-------------------23-----32------2033101001111----2223310255445675226861--46 Q gi|254780583|r 83 SSK-------------------IP-----GI------DHGLSDGDTFDFG----SHPIKIIATPGHTIGHICYHFM--ND 126 (256) Q Consensus 83 ~~~-------------------i~-----~~------~~~l~dgd~i~ig----~~~~~vi~tPGHT~g~i~~~~~--~~ 126 (256) ..- .+ .+ -..++=++.+.+. +++++.+. -||+.|+.++.+. .+ T Consensus 94 ~~L~~~~l~D~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~l~Y~q~~~l~~~~~gl~it~~~-AGH~LGsa~~~I~~~~~ 172 (717) T 2i7x_A 94 INLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVPLKYSQLVDLRSRYDGLTLLAYN-AGVCPGGSIWCISTYSE 172 (717) T ss_dssp HHHHHHHHHHHHHHTTSSSSBTTCCSCHHHHHHHHHTSEEECTTCCEEETTTTTTEEEEEEE-CSSSTTCEEEEEECSSC T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCEEECCCCEEECCCCCCCEEEEEEE-CCCCCCCEEEEEEECCE T ss_conf 99999999999997531165556678999999998504894799859803788857999965-56323426999982995 Q ss_pred CCCCCCCE Q ss_conf 54313770 Q gi|254780583|r 127 HFLCVGDT 134 (256) Q Consensus 127 ~~lFtGDt 134 (256) +++||||. T Consensus 173 ~IvytgD~ 180 (717) T 2i7x_A 173 KLVYAKRW 180 (717) T ss_dssp EEEECSSC T ss_pred EEEEECCC T ss_conf 99996367 No 46 >3kl7_A Putative metal-dependent hydrolase; structural genomics, joint center for structural genomics, JCSG; 2.30A {Parabacteroides distasonis atcc 8503} Probab=98.77 E-value=3.1e-09 Score=79.12 Aligned_cols=120 Identities=14% Similarity=0.105 Sum_probs=67.3 Q ss_pred ECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCC-CEEEEEECCCCHHHHCHHH-HHHHHCCCEEEECCCCCCCCCC Q ss_conf 0576269999889984999869998999999998599-6439998589843300000-1111000101200012343233 Q gi|254780583|r 11 YHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGW-FLTHIFNTHHHIDHTRANL-NLKKFFNCTIFGPLEESSKIPG 88 (256) Q Consensus 11 ~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~-~i~~Il~TH~H~DHigg~~-~l~~~~~~~v~~~~~~~~~i~~ 88 (256) +.-+ +++|..+ +..++|||..... .-..+ ++++||+||.|+||++... ...++.+++|+++......+.. T Consensus 35 lGha-s~lie~~--g~~ILiDP~~~~~-----~~~~~p~iD~VLiTH~H~DH~~~~~l~~~~~~~~~vi~~~~~~~~l~~ 106 (235) T 3kl7_A 35 IKHG-SLMLTYD--NHSIQVDPVSEYA-----DYTTFPKADIILITHEHGDHLDPKAIQAVEKSDTEIIANENSQKKLGK 106 (235) T ss_dssp EETT-EEEEEET--TEEEEESCCTTTC-----CTTSSCCCSEEEECCSSTTTCCHHHHHHHCCTTCEEEECHHHHHHHTC T ss_pred EECC-EEEEEEC--CEEEEECCCCCCC-----CHHCCCCCCEEEECCCCCCCCCCHHHHHHHCCCCEEEECHHHHHHHHH T ss_conf 8315-9999989--9999988999988-----620089888999799870126722012464269669815899877510 Q ss_pred CCEEEEEHHCCCCCCCCCCCCCC----C----CCCCC-CCEEEEC--CCCCCCCCCEEEEC Q ss_conf 22033101001111222331025----5----44567-5226861--46543137704304 Q gi|254780583|r 89 IDHGLSDGDTFDFGSHPIKIIAT----P----GHTIG-HICYHFM--NDHFLCVGDTLFSL 138 (256) Q Consensus 89 ~~~~l~dgd~i~ig~~~~~vi~t----P----GHT~g-~i~~~~~--~~~~lFtGDtLF~~ 138 (256) .......+....+++.+++++.+ + .|..+ .++|.++ +..+.|+|||-+.. T Consensus 107 ~~~~~~~~~~~~~~~~~I~~~p~~h~~~~~~~~~~~~~~~gyvie~~g~~i~~~GDt~~~~ 167 (235) T 3kl7_A 107 GKVLKNGDTDTSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDTEDIP 167 (235) T ss_dssp SEECCTTCEECCSTTCEEEEEECCCCSTTGGGTSCTTTSEEEEEEETTEEEEECCSCCSCG T ss_pred CCCCCCCCCEEEECCCEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCHH T ss_conf 6420257732775572067897341578766767875337789997997999945867757 No 47 >3h3e_A Uncharacterized protein TM1679; structural genomics, surface entropy reduction, ISFI, beta- lactamase superfamily, PSI-2; 2.75A {Thermotoga maritima} Probab=98.69 E-value=5.8e-08 Score=70.90 Aligned_cols=51 Identities=24% Similarity=0.328 Sum_probs=40.2 Q ss_pred EEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCC-EEEEEECCCCHHHHCHHHHHHHH Q ss_conf 2699998899849998699989999999985996-43999858984330000011110 Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPDTYIISKMLREKGWF-LTHIFNTHHHIDHTRANLNLKKF 71 (256) Q Consensus 15 y~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~-i~~Il~TH~H~DHigg~~~l~~~ 71 (256) +|.+| + .+++|.|....+++-+++.|+. +++|++||.|+||++|+..|.++ T Consensus 33 ~s~~i--e----~iL~D~G~~~~~~~n~~~lgId~~daV~lTH~H~DH~gGl~~L~~~ 84 (267) T 3h3e_A 33 FSVLV--D----SVLFDTGKSDVFLKNARKLGIDLPKDVLISHGHYDHAGGLLYLSGK 84 (267) T ss_dssp CEEEE--T----TEEECCCSSSHHHHHHHHTTCCCCSEEECSCSCHHHHGGGGGCCSC T ss_pred EEEEE--C----CEEEECCCCHHHHHHHHHCCCCHHHCEEEECCCHHHCCCHHHHHHH T ss_conf 55444--5----2899799997999999984998468489814553110788999876 No 48 >2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z, hydrolase, metal- binding, endonuclease, tRNA processing, zinc; 2.9A {Escherichia coli} SCOP: d.157.1.7 Probab=98.68 E-value=4.7e-08 Score=71.48 Aligned_cols=66 Identities=24% Similarity=0.184 Sum_probs=47.1 Q ss_pred EEEEEEE--CCCCEEEEECCCCHHHHHHHHHHCCC---CEEEEEECCCCHHHHCHHHHHHHH-------CCCEEEECCCC Q ss_conf 2699998--89984999869998999999998599---643999858984330000011110-------00101200012 Q gi|254780583|r 15 FCILIHN--HKYRLTAAIDAPDTYIISKMLREKGW---FLTHIFNTHHHIDHTRANLNLKKF-------FNCTIFGPLEE 82 (256) Q Consensus 15 y~YlI~d--~~t~~~viIDpgd~~~i~~~l~~~~~---~i~~Il~TH~H~DHigg~~~l~~~-------~~~~v~~~~~~ 82 (256) -+|+|.- ...+..++||+|+. +...+.+.++ ++++|++||.|+||++|...|... -...||++... T Consensus 21 s~~lv~~~~~~~~~~iL~DcG~g--~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~ll~~~~~~~~~~~l~i~gP~~~ 98 (306) T 2cbn_A 21 TAILLNLQHPTQSGLWLFDCGEG--TQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGI 98 (306) T ss_dssp CEEEEECCCSSCCCEEEECCCTT--HHHHHHTSCCCTTTEEEEECSCCCHHHHTTHHHHHHHHHHTTCCSCEEEEESTTH T ss_pred CEEEEEEECCCCCCEEEEECCHH--HHHHHHHHCCCHHHCCEEEEECCCHHHCCCCCHHHHHHHHCCCCCCCCCCCCHHH T ss_conf 88999972688994899999758--9999998189966775899834668980784013310120378987656686778 No 49 >3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas putida KT2440} PDB: 1xto_A Probab=98.44 E-value=4.7e-07 Score=65.04 Aligned_cols=65 Identities=17% Similarity=0.060 Sum_probs=45.6 Q ss_pred EEEEEEECCCCEEEEECCCCHHHHHHHHHHC-------C---CCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCC Q ss_conf 2699998899849998699989999999985-------9---964399985898433000001111000101200012 Q gi|254780583|r 15 FCILIHNHKYRLTAAIDAPDTYIISKMLREK-------G---WFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEE 82 (256) Q Consensus 15 y~YlI~d~~t~~~viIDpgd~~~i~~~l~~~-------~---~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~ 82 (256) -|.+|.++ ++..++||.|.. +...+.+. + -+|++|++||.|.||+.|+..|.+....++|++... T Consensus 42 ssi~l~~~-g~~~iLiD~G~~--~~~ql~~~~~~~~~~~i~~~~Id~I~lTH~H~DH~~GL~~L~~~~~~~v~~~~~~ 116 (321) T 3jxp_A 42 SSIALSDD-GVHWILCNASPD--IRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLREGCPHQVWCTDMV 116 (321) T ss_dssp CEEEEESS-SSSEEEECCCTT--HHHHHHTCGGGCCCSSSSCCSEEEEECSCCCHHHHGGGGGGGGGCCEEEEECHHH T ss_pred EEEEEEEC-CCEEEEEECCCC--HHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCEEEEEECHHH T ss_conf 47999979-985999979975--9999999765483334678875589970776124767999961220237606667 No 50 >1y44_A Ribonuclease Z; zinc-dependent metal hydrolase; HET: MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB: 2fk6_A* Probab=98.31 E-value=2e-06 Score=60.98 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=45.3 Q ss_pred CCEEEEEE-ECCCCEEEEECCCCHHHHHHHHHHCCC---CEEEEEECCCCHHHHCHHHHHHHH-------CCCEEEECCC Q ss_conf 76269999-889984999869998999999998599---643999858984330000011110-------0010120001 Q gi|254780583|r 13 DNFCILIH-NHKYRLTAAIDAPDTYIISKMLREKGW---FLTHIFNTHHHIDHTRANLNLKKF-------FNCTIFGPLE 81 (256) Q Consensus 13 DNy~YlI~-d~~t~~~viIDpgd~~~i~~~l~~~~~---~i~~Il~TH~H~DHigg~~~l~~~-------~~~~v~~~~~ 81 (256) .+-+|++. .+.++..++||+|..- ...+.+.++ ++++|++||.|+||++|...+... ...++|++.. T Consensus 18 ~~s~~~v~~~~~~~~~iLiD~G~g~--~~~l~~~~~~~~~i~~I~iTH~H~DH~~Gl~~~~~~~~~~~~~~~~~iy~p~~ 95 (320) T 1y44_A 18 NVTSVALKLLEERRSVWLFDCGEAT--QHQMLHTTIKPRKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELTVYGPKG 95 (320) T ss_dssp CBCEEEEEETTTTSEEEEECCCTTH--HHHHTTSSCCGGGEEEEECSBCCGGGTTTHHHHHHHHHHTTCCSCEEEEESTT T ss_pred CCCEEEEEEEECCCCEEEEECCHHH--HHHHHHCCCCHHHCCEEEECCCCHHHCCCCHHHHHHHHHCCCCCCCCCCCCHH T ss_conf 7688999998069948999497799--99999839996676689972445665167135555555316776542347701 No 51 >2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A {Escherichia coli} PDB: 2wym_A* Probab=98.21 E-value=1.8e-06 Score=61.18 Aligned_cols=91 Identities=19% Similarity=0.253 Sum_probs=53.6 Q ss_pred CEEEEEECCCCHHHHCHHHH--HHHH--CCCEEEECCCCCCCCC------CCCEEEEEHHCCCCCCCCCCCCCC------ Q ss_conf 64399985898433000001--1110--0010120001234323------322033101001111222331025------ Q gi|254780583|r 48 FLTHIFNTHHHIDHTRANLN--LKKF--FNCTIFGPLEESSKIP------GIDHGLSDGDTFDFGSHPIKIIAT------ 111 (256) Q Consensus 48 ~i~~Il~TH~H~DHigg~~~--l~~~--~~~~v~~~~~~~~~i~------~~~~~l~dgd~i~ig~~~~~vi~t------ 111 (256) ++++||+||.|+||++.... +.+. ..++++++......+. .....+..|+.+.+++.++.++.+ T Consensus 109 ~IDaVLiTH~H~DHld~~~l~~~~~~~~~~~~~~gP~~~~~~l~~~g~~~~~i~~~~~g~~~~v~~~~i~~~~~~~~~~~ 188 (360) T 2wyl_A 109 QIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKVKDIEIHALDAFDRTAL 188 (360) T ss_dssp CCSEEECSBSCTTTCCHHHHHHHHHHSCTTCCEEECHHHHHHHHHHTCCGGGEEECCTTCEEEETTEEEEEEECCCC--- T ss_pred CCCEEEECCCCHHHCCCHHHHHHHHCCCCCCEEECCHHHHHHHHHCCCCHHHEEEECCCCEEEEECCEEEEEEEEEEEEE T ss_conf 88899979996021780999999854767743865889999998669965515760578657740213577631455556 Q ss_pred ---CC-C----------CCCCCEEEEC--CCCCCCCCCEEEEC Q ss_conf ---54-4----------5675226861--46543137704304 Q gi|254780583|r 112 ---PG-H----------TIGHICYHFM--NDHFLCVGDTLFSL 138 (256) Q Consensus 112 ---PG-H----------T~g~i~~~~~--~~~~lFtGDtLF~~ 138 (256) |+ | ....+.|.++ +..+.|+|||-+.. T Consensus 189 ~~~p~~~~~~~~~~~~~~~~~~g~~ie~~g~tIy~sGDT~~~~ 231 (360) T 2wyl_A 189 ITLPADQKAAGVLPDGMDDRAVNYLFKTPGGSLYHSGDSHYSN 231 (360) T ss_dssp ---------------CCTTTBEEEEEEETTEEEEECTTCCCCT T ss_pred EECCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCH T ss_conf 6426644466655777877404899971991899926988668 No 52 >3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like fold, MCSG, structural genomics, PSI-2; 1.80A {Vibrio cholerae o1 biovar eltor str} Probab=98.09 E-value=7.8e-07 Score=63.61 Aligned_cols=92 Identities=18% Similarity=0.273 Sum_probs=58.3 Q ss_pred CEEEEEECCCCHHHHCHH--HHHHHHC--CCEEEECCCCCCCC-----CC-CCEEEEEHHCCCCCCCCCCCCCCC----- Q ss_conf 643999858984330000--0111100--01012000123432-----33-220331010011112223310255----- Q gi|254780583|r 48 FLTHIFNTHHHIDHTRAN--LNLKKFF--NCTIFGPLEESSKI-----PG-IDHGLSDGDTFDFGSHPIKIIATP----- 112 (256) Q Consensus 48 ~i~~Il~TH~H~DHigg~--~~l~~~~--~~~v~~~~~~~~~i-----~~-~~~~l~dgd~i~ig~~~~~vi~tP----- 112 (256) ++++||+||.|+||++.. ..+.+.. .++++++......+ +. ....++.|+.+++++.+++++.+- T Consensus 133 ~IDaVLITH~H~DHlD~~tl~~i~~~~~~~~~~igP~~~~~~l~~~gvp~~~ii~l~~gd~~~i~~i~I~~~pa~H~~~~ 212 (379) T 3bv6_A 133 EIDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLGWGVPQERCIVAKVGDVLEIGDVKIRVLDSFDRTAL 212 (379) T ss_dssp CCSEEECSBCSGGGCCHHHHHHHHHHSCTTCEEEECHHHHHHHHHHTCCGGGEEECCTTCEEEETTEEEEEEECCCHHHH T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHCCCCCEEEECCHHHHHHHHHCCCCHHHEEEECCCCEEEECCEEEEEEEEECCCCC T ss_conf 98889989997111796999999850797459983789999998759966766881478728987779999943536510 Q ss_pred -----CCCC-----------CCCEEEEC--CCCCCCCCCEEEECC Q ss_conf -----4456-----------75226861--465431377043046 Q gi|254780583|r 113 -----GHTI-----------GHICYHFM--NDHFLCVGDTLFSLG 139 (256) Q Consensus 113 -----GHT~-----------g~i~~~~~--~~~~lFtGDtLF~~g 139 (256) +|.. ..++|.++ +..+.|+|||.+... T Consensus 213 ~~~p~~~~~~~~~~~~~~~~~~~gylIe~~g~~Iy~sGDT~~~~~ 257 (379) T 3bv6_A 213 VTLPKGVSSYDKAILDGMDERAVNYLIETSGGSVYHSGDSHYSNY 257 (379) T ss_dssp TCCCTTSCSSCGGGGGCHHHHBEEEEEEETTEEEEECTTCCCCTT T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCCCCHH T ss_conf 014776444676666688765316889719938999679996478 No 53 >1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily TM0207; structural genomics, JCSG, PSI, protein structure initiative; 2.00A {Thermotoga maritima} SCOP: d.157.1.4 Probab=98.03 E-value=4.3e-06 Score=58.83 Aligned_cols=102 Identities=19% Similarity=0.238 Sum_probs=59.9 Q ss_pred ECCCEEEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHCCCEEEECCCCCCCCCCCC Q ss_conf 05762699998899849998699989999999985996439998589843300000111100010120001234323322 Q gi|254780583|r 11 YHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGID 90 (256) Q Consensus 11 ~~DNy~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~~~~v~~~~~~~~~i~~~~ 90 (256) +.-+ +|+|..+ +..++|||..... .......++++|++||.|+||... ++.+. + . T Consensus 18 lGhs-~~lIe~~--g~~ILiDP~~~~~---~~~~~~~~~D~VliSH~H~DH~~~--~~~~~-~----------------~ 72 (220) T 1vjn_A 18 FGHA-CFALEME--GKTIVTDPFDESV---GYPIPNVTADVVTESHQHFDHNAH--HLVKG-N----------------F 72 (220) T ss_dssp EETT-EEEEEET--TEEEEESCCC--------CCCCCBCSEEECSSCC---CGG--GGCBS-S----------------C T ss_pred EECC-EEEEEEC--CEEEEECCCCCCC---CCCCCCCCCCEEEECCCCCCCCCH--HHCCC-C----------------E T ss_conf 7031-9999989--9999989998877---898777878899966878676751--23146-2----------------6 Q ss_pred EEEEEHHCCCCCCCCCCCC---CCCCCCC---CCCEEEECCC--CCCCCCCEEEE Q ss_conf 0331010011112223310---2554456---7522686146--54313770430 Q gi|254780583|r 91 HGLSDGDTFDFGSHPIKII---ATPGHTI---GHICYHFMND--HFLCVGDTLFS 137 (256) Q Consensus 91 ~~l~dgd~i~ig~~~~~vi---~tPGHT~---g~i~~~~~~~--~~lFtGDtLF~ 137 (256) ..+..+...++++.+++.+ |.|.+.. ..+.|+++.+ .+.|+|||-+. T Consensus 73 ~v~~~~g~~~~~~~~I~~v~a~H~~~~~~~~g~~~~~~ie~~g~~I~~~GDt~~~ 127 (220) T 1vjn_A 73 RVIDRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDLGHV 127 (220) T ss_dssp EEECSSEEEEETTEEEEEEEEEEC-------CEEEEEEEEETTEEEEECTTCCSC T ss_pred EEECCCCEEEECCEEECCCCCEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCC T ss_conf 9960456599798221243206518888547875799998499299996898889 No 54 >3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics, seattle structural genomics center for infectious disease; HET: 5GP TLA; 1.27A {Brucella melitensis biovar abortus} Probab=97.88 E-value=2.5e-05 Score=53.81 Aligned_cols=58 Identities=19% Similarity=0.253 Sum_probs=42.5 Q ss_pred CCCEEEEEEEC---CCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHH Q ss_conf 57626999988---998499986999899999999859964399985898433000001111 Q gi|254780583|r 12 HDNFCILIHNH---KYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKK 70 (256) Q Consensus 12 ~DNy~YlI~d~---~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~ 70 (256) +-|.|+||... .++..++||.|..- ..+.++....++++|++||.|+||+.|...|.. T Consensus 61 R~~~S~li~~~~~~~~~~~iLiD~G~~~-~~~~~~~~~~~id~I~lTH~H~DH~~GL~~l~~ 121 (293) T 3md7_A 61 RRRASLLVERYDAEGNNTVVVIDTGPDF-RMQMIDSGVHMLDAAVYTHPHADHIHGIDDLRT 121 (293) T ss_dssp BCBCEEEEEEECTTCCEEEEEECCCTTH-HHHHHHHTCCCCSEEECSCCCHHHHTTGGGGHH T ss_pred CCCCEEEEEECCCCCCCEEEEEECCCCH-HHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHH T ss_conf 6334799985467899758999688137-999864234567789984466444557545444 No 55 >2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.97A {Thermotoga maritima} SCOP: d.157.1.7 PDB: 1ww1_A Probab=97.73 E-value=2.2e-05 Score=54.18 Aligned_cols=50 Identities=22% Similarity=0.275 Sum_probs=36.5 Q ss_pred EEEEEECCCCEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHH Q ss_conf 6999988998499986999899999999859964399985898433000001111 Q gi|254780583|r 16 CILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKK 70 (256) Q Consensus 16 ~YlI~d~~t~~~viIDpgd~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~ 70 (256) .|+.+.+ +.++||+|.. +...+.....+|++|++||.|+||++|...|.. T Consensus 13 t~~~~~~---~~iLiD~G~g--~~~~l~~~~~~i~~IfiTH~H~DHi~gl~~l~~ 62 (280) T 2e7y_A 13 TWIYYSP---ERILFDAGEG--VSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVN 62 (280) T ss_dssp EEEEEGG---GTEEEEECTT--HHHHHGGGGGGCCEEECSCCCHHHHTTHHHHHH T ss_pred EEEEECC---CEEEEECCHH--HHHHHCCCCCCCCEEEEECCCHHHHCCHHHHHH T ss_conf 9999899---8799989744--999855552238789991786356467999999 No 56 >2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic encephalopathy, ETHE1, structural genomics, protein structure initiative; 1.48A {Arabidopsis thaliana} Probab=87.33 E-value=0.15 Score=29.31 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=20.2 Q ss_pred CCHHHHHHHCCCCCCCCHHHHHHCC Q ss_conf 8789998728224678989999738 Q gi|254780583|r 211 STISLEKKVNPFLRIENTSLRKNLN 235 (256) Q Consensus 211 stl~~Ek~~NPflr~~~~~~~~~~~ 235 (256) ||+++|++.||||+.+.+++++.+. T Consensus 191 tt~~~e~~~Np~l~~~~~~~~~~~~ 215 (245) T 2gcu_A 191 STVGEEMQHNPRLTKDKETFKTIMS 215 (245) T ss_dssp EEHHHHHHHCTTTTSCHHHHHHHHH T ss_pred CHHHHHHHCCHHHHHHHHHHHHHHH T ss_conf 3367565059999867999999997 No 57 >3olh_A MST, 3-mercaptopyruvate sulfurtransferase; structural genomics, structural genomics consortium, SGC, RH fold; 2.50A {Homo sapiens} Probab=78.90 E-value=2.4 Score=21.57 Aligned_cols=63 Identities=17% Similarity=0.160 Sum_probs=40.4 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECCCCCHHHHHHHHHHCC Q ss_conf 554456752268614654313770430461344666315677665442-013446502016652045889877502 Q gi|254780583|r 111 TPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI-KSFSDKTHIYFGHEYTENNAYFALSCD 185 (256) Q Consensus 111 tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl-~~Lp~~t~i~pGHeYt~~nl~Fa~~~~ 185 (256) -+||-||++.+-+.. ++..|..|. +++++.+-+.+. ....+.+++|||--.+.+..-|++.+. T Consensus 214 r~GHIPGA~n~p~~~---~~~~~~~~k---------~~~el~~~~~~~gi~~~k~vI~YC~sG~~As~~~~al~~l 277 (302) T 3olh_A 214 EPGHIPGTVNIPFTD---FLSQEGLEK---------SPEEIRHLFQEKKVDLSKPLVATCGSGVTACHVALGAYLC 277 (302) T ss_dssp CCCCCTTCEECCGGG---GBCSSSCBC---------CHHHHHHHHHHTTCCTTSCEEEECSSSSTTHHHHHHHHTT T ss_pred CCCCCCCCCCCCHHH---HHHCCCCCC---------CHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHC T ss_conf 578868962177899---500032359---------9999999999749999999999858399999999999986 No 58 >1rhs_A Sulfur-substituted rhodanese; transferase, sulfurtransferase; 1.36A {Bos taurus} SCOP: c.46.1.2 c.46.1.2 PDB: 1boh_A 1boi_A 1orb_A 2ora_A 1dp2_A* 1rhd_A Probab=72.74 E-value=3.6 Score=20.40 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=39.2 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECCCCCHHHHHHHHHHCC Q ss_conf 554456752268614654313770430461344666315677665442-013446502016652045889877502 Q gi|254780583|r 111 TPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI-KSFSDKTHIYFGHEYTENNAYFALSCD 185 (256) Q Consensus 111 tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl-~~Lp~~t~i~pGHeYt~~nl~Fa~~~~ 185 (256) -+||-||++.+-..+ ++..|..|. +++++.+-++.. ......+++|||.-.+.+.+-|++... T Consensus 200 r~GhIPGAvnip~~~---~~~~~~~~k---------~~~el~~~~~~~gi~~~k~ii~yC~sG~rAs~~~~~l~~l 263 (296) T 1rhs_A 200 DSGHIRGSVNMPFMN---FLTEDGFEK---------SPEELRAMFEAKKVDLTKPLIATCRKGVTACHIALAAYLC 263 (296) T ss_dssp CCCEETTCEECCGGG---GBCTTSCBC---------CHHHHHHHHHHTTCCTTSCEEEECSSSSTHHHHHHHHHHT T ss_pred CCCCCCCCCCCCHHH---HHCCCCCCC---------CHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHC T ss_conf 676777865578899---715544579---------9999999999759999999999897199999999999986 No 59 >3aay_A Putative thiosulfate sulfurtransferase; X-RAY crystallography, sulfurtranserase, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} PDB: 3aax_A 3hwi_A Probab=72.66 E-value=3.5 Score=20.51 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=37.9 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECCCCCHHHHHHHHHH Q ss_conf 554456752268614654313770430461344666315677665442-0134465020166520458898775 Q gi|254780583|r 111 TPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI-KSFSDKTHIYFGHEYTENNAYFALS 183 (256) Q Consensus 111 tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl-~~Lp~~t~i~pGHeYt~~nl~Fa~~ 183 (256) -+||-||++.+-+.+ ++..|..|. +.+++.+-+... ......+++|||.-.+.+..-|++. T Consensus 186 r~GhIPGA~nip~~~---~~~~~~~~~---------~~~el~~~~~~~gi~~~k~vi~yC~sG~~As~~~~~l~ 247 (277) T 3aay_A 186 RPGHIPGAINVPWSR---AANEDGTFK---------SDEELAKLYADAGLDNSKETIAYCRIGERSSHTWFVLR 247 (277) T ss_dssp CCSBCTTCEECCGGG---GBCTTSCBC---------CHHHHHHHHHHHTCCTTSCEEEECSSHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHH---CCCCCCCCC---------CHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHH T ss_conf 587657876774665---058763434---------28999999998189989998998698199999999999 No 60 >1uar_A Rhodanese; sulfurtransferase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.70A {Thermus thermophilus} SCOP: c.46.1.2 c.46.1.2 Probab=61.66 E-value=7.4 Score=18.39 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=37.3 Q ss_pred CCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEECCCCCHHHHHHHHHH Q ss_conf 54456752268614654313770430461344666315677665442-0134465020166520458898775 Q gi|254780583|r 112 PGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI-KSFSDKTHIYFGHEYTENNAYFALS 183 (256) Q Consensus 112 PGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl-~~Lp~~t~i~pGHeYt~~nl~Fa~~ 183 (256) +||-||++.+-+.+ ++..|..|. +.+++.+-+... ......+++||+--.+.+.+-|++. T Consensus 194 ~GhIPgA~nip~~~---~~~~~~~~~---------~~~el~~~~~~~gi~~~k~vI~yC~sG~~A~~~~~~L~ 254 (285) T 1uar_A 194 AGHIPGAKNIPWAK---AVNPDGTFK---------SAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLK 254 (285) T ss_dssp CSBCTTCEECCGGG---GBCTTSCBC---------CHHHHHHHHGGGTCCTTSEEEEECSSHHHHHHHHHHHH T ss_pred CEEECCCCCCHHHH---HCCCCCCCC---------CHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHH T ss_conf 20768852032766---247663433---------16999999998299999999998798799999999999 No 61 >2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A* Probab=60.12 E-value=6.5 Score=18.78 Aligned_cols=27 Identities=4% Similarity=-0.116 Sum_probs=14.2 Q ss_pred EEEEEECCCEEEEEEECC--CCEEEEECC Q ss_conf 530110576269999889--984999869 Q gi|254780583|r 6 IAISLYHDNFCILIHNHK--YRLTAAIDA 32 (256) Q Consensus 6 i~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256) +.+..|.|-=+|+-..+. ++.+++|-. T Consensus 59 ~~~~~FpDGE~~v~i~e~Vrg~dV~iiqs 87 (379) T 2ji4_A 59 VQVYQEPNRETRVQIQESVRGKDVFIIQT 87 (379) T ss_dssp EEEEECTTSCEEEEECSCCTTCEEEEECC T ss_pred EEEEECCCCCEEEEECCCCCCCCEEEEEC T ss_conf 38898799978998798768983899968 No 62 >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} Probab=53.76 E-value=2.1 Score=21.90 Aligned_cols=10 Identities=20% Similarity=0.039 Sum_probs=4.2 Q ss_pred HHHHHHCCCC Q ss_conf 9999985996 Q gi|254780583|r 39 SKMLREKGWF 48 (256) Q Consensus 39 ~~~l~~~~~~ 48 (256) +..+...|.+ T Consensus 104 l~l~~~lgv~ 113 (370) T 2elf_A 104 IIALDLLGFK 113 (370) T ss_dssp HHHHHHTTCC T ss_pred HHHHHHCCCC T ss_conf 9999975998 No 63 >3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genomics; HET: MSE ACO; 1.90A {Bacillus anthracis} PDB: 3n0s_A* 3kzl_A* 3n0m_A* 3e4f_A* Probab=48.46 E-value=14 Score=16.68 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=22.0 Q ss_pred CHHHHHHHHHHCCCCEEEEEECCCCHHHHC Q ss_conf 989999999985996439998589843300 Q gi|254780583|r 34 DTYIISKMLREKGWFLTHIFNTHHHIDHTR 63 (256) Q Consensus 34 d~~~i~~~l~~~~~~i~~Il~TH~H~DHig 63 (256) -.+.+.+.+++.|++-..+++-|.-..=+| T Consensus 16 T~~~l~~~l~~LGI~~gd~v~VHssl~~lg 45 (268) T 3ijw_A 16 TIKTITNDLRKLGLKKGMTVIVHSSLSSIG 45 (268) T ss_dssp CHHHHHHHHHHHTCCTTCEEEEEECTGGGC T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCHHHHC T ss_conf 699999999981989949999977868839 No 64 >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Probab=46.81 E-value=14 Score=16.52 Aligned_cols=98 Identities=17% Similarity=0.162 Sum_probs=51.9 Q ss_pred HHHHHCCCCEEEEEECCCCHHHHCHHHHHHHH-------CCCEEEECCCCC----------------------CCCCCCC Q ss_conf 99998599643999858984330000011110-------001012000123----------------------4323322 Q gi|254780583|r 40 KMLREKGWFLTHIFNTHHHIDHTRANLNLKKF-------FNCTIFGPLEES----------------------SKIPGID 90 (256) Q Consensus 40 ~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~-------~~~~v~~~~~~~----------------------~~i~~~~ 90 (256) ..+++.++....|+.+-.+... |...|.+. -++-+.|..+.. ..+|+.+ T Consensus 124 ~~~~~~g~~~~~v~~vSa~~~~--g~~~L~~~i~~~~~~~~v~vvG~~NvGKSTLIN~L~~~~~~~~~~~~~vs~~PGtT 201 (368) T 3h2y_A 124 YSAKQLGLKPEDVFLISAAKGQ--GIAELADAIEYYRGGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTT 201 (368) T ss_dssp HHHHHTTCCCSEEEECCTTTCT--THHHHHHHHHHHHTTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC--- T ss_pred HHHHHCCCCCCCEEECCCCCCC--CHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEE T ss_conf 9999749986404650332576--78999999987516865999757875637888887653034556212456999883 Q ss_pred EEEEEHHCCCCCCCCCCCCCCCCCC-CCCCEEEECCC---------------CCCCCCCEEEECCCCCC Q ss_conf 0331010011112223310255445-67522686146---------------54313770430461344 Q gi|254780583|r 91 HGLSDGDTFDFGSHPIKIIATPGHT-IGHICYHFMND---------------HFLCVGDTLFSLGCGRI 143 (256) Q Consensus 91 ~~l~dgd~i~ig~~~~~vi~tPGHT-~g~i~~~~~~~---------------~~lFtGDtLF~~g~Gr~ 143 (256) ..+ ..+.++. ...++.|||-. ++++.=++..+ -.+..|-+||.||.+|+ T Consensus 202 ~~~---~~i~l~~-~~~l~DTPGi~~~~~~~~~l~~~~lk~~~p~k~i~p~t~~l~~gqsl~igGL~ri 266 (368) T 3h2y_A 202 LDL---IDIPLDE-ESSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARF 266 (368) T ss_dssp -CE---EEEESSS-SCEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEE T ss_pred CCE---EEEECCC-CCEEEECCCCCCCCHHHHHCCHHHHHHHCCCCCCCCEEEEECCCCEEEECCEEEE T ss_conf 774---8998299-9789989595736430343699898753675532754999679967997327999 No 65 >3dah_A Ribose-phosphate pyrophosphokinase; seattle structural genomics center for infectious disease, ssgcid, cytoplasm, magnesium; HET: AMP; 2.30A {Burkholderia pseudomallei 1710B} Probab=46.15 E-value=15 Score=16.46 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=22.5 Q ss_pred EEEEEEECCCEEEEEEECC--CCEEEEECCC--CH-H------HHHHHHHHCCCC Q ss_conf 4530110576269999889--9849998699--98-9------999999985996 Q gi|254780583|r 5 NIAISLYHDNFCILIHNHK--YRLTAAIDAP--DT-Y------IISKMLREKGWF 48 (256) Q Consensus 5 ~i~ip~~~DNy~YlI~d~~--t~~~viIDpg--d~-~------~i~~~l~~~~~~ 48 (256) .+.+..|.|.-.|+-..+. ++.+++|=.. .. + .+++.+++.+.+ T Consensus 33 ~~~~~~FpDGE~~vri~~~vrg~dV~iiqs~~~~~nd~lmeLll~~~a~r~~gA~ 87 (319) T 3dah_A 33 KAMVSRFSDGEIQVEIQENVRGKDVFVLQSTCAPTNDNLMELMIMVDALKRASAG 87 (319) T ss_dssp CEEEEECTTSCEEEEECSCCBTCEEEEECCCCSSHHHHHHHHHHHHHHHHHTTBS T ss_pred EEEEEECCCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf 3488988999788877897679808999379968637899999999999874977 No 66 >1kid_A Groel (HSP60 class); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Escherichia coli} SCOP: c.8.5.1 PDB: 1fya_A 1fy9_A 1la1_A 1jon_A 1dk7_A 1dkd_A Probab=44.20 E-value=2.3 Score=21.72 Aligned_cols=87 Identities=17% Similarity=0.207 Sum_probs=55.4 Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHH Q ss_conf 12223310255445675226861465431377043046134466631567766544201344650201665204588987 Q gi|254780583|r 102 GSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFA 181 (256) Q Consensus 102 g~~~~~vi~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa 181 (256) |.+.+.++..||.-..--- .-++=+++||-++|....|--++.--.+++-|-+|+..-.++|.|..|+. T Consensus 96 g~l~v~aVkaPgfG~~r~~--~LeDLAilTGa~vi~~~~g~~l~~~~~~~LGsa~kv~itk~~T~ii~g~g--------- 164 (203) T 1kid_A 96 GIVKVAAVKAPGFGDRRKA--MLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIIDGVG--------- 164 (203) T ss_dssp TSCCEEEEECCSCHHHHHH--HHHHHHHHHTCCCBCGGGTCCGGGCCGGGCEEEEEEEECSSCEEEEEECC--------- T ss_pred CCCCEEEECCCCCCHHHHH--HHHHHHHHHCCEEECHHCCCCCCCCCHHHCCCCCEEEECCCCEEEECCCC--------- T ss_conf 8753246438887767899--99999998399986510277624399868897558998798708975899--------- Q ss_pred HHCCCCCHHHHHHHHHHHHHHHC Q ss_conf 75023447899999999988857 Q gi|254780583|r 182 LSCDPHNLELQKYCSKVKSMRSQ 204 (256) Q Consensus 182 ~~~~p~n~~~~~~~~~~~~~~~~ 204 (256) +++.+.++..++++..++ T Consensus 165 -----~~~~I~~Ri~~Lk~~l~~ 182 (203) T 1kid_A 165 -----EEAAIQGRVAQIRQQIEE 182 (203) T ss_dssp -----CHHHHHHHHHHHHHHHHH T ss_pred -----CHHHHHHHHHHHHHHHHH T ss_conf -----989999999999999998 No 67 >3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious disease, structural genomics; 2.10A {Mycobacterium tuberculosis} Probab=43.54 E-value=16 Score=16.20 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=33.1 Q ss_pred CCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHH Q ss_conf 544567522686146543137704304613446663156776654420134465020166520458898775 Q gi|254780583|r 112 PGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALS 183 (256) Q Consensus 112 PGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp~~t~i~pGHeYt~~nl~Fa~~ 183 (256) .||-||++.+-+.+ ++..|..|. +.+++.+-++.| .....+++||+--.+.+..-|++. T Consensus 222 ~GHIPgAvnip~~~---~~d~~~~~k---------~~~eL~~~~~~i-~~dk~vi~yC~sG~~Aa~~~~~L~ 280 (318) T 3hzu_A 222 AGHIPTAVHIPWGK---AADESGRFR---------SREELERLYDFI-NPDDQTVVYCRIGERSSHTWFVLT 280 (318) T ss_dssp CSBCTTCEECCGGG---GBCTTSCBC---------CHHHHHHHTTTC-CTTCCCEEECSSSHHHHHHHHHHH T ss_pred CCCCCCCCCCCHHH---HCCCCCCCC---------CHHHHHHHHHCC-CCCCCEEEEECCCHHHHHHHHHHH T ss_conf 11526743223063---258641108---------899999998548-999988999798199999999999 No 68 >2h06_A Ribose-phosphate pyrophosphokinase I; PRS1, PRPP synthetase 1, phosphoribosyl pyrophosphate synthetase 1, transferase; 2.20A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h07_A 2h08_A Probab=41.52 E-value=17 Score=16.05 Aligned_cols=27 Identities=0% Similarity=-0.056 Sum_probs=15.5 Q ss_pred EEEEEECCCEEEEEEECC--CCEEEEECC Q ss_conf 530110576269999889--984999869 Q gi|254780583|r 6 IAISLYHDNFCILIHNHK--YRLTAAIDA 32 (256) Q Consensus 6 i~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256) +.+..|.|.=.|+-..+. +..+++|-+ T Consensus 30 ~~~~~F~dGE~~v~i~e~vrg~dV~iiqs 58 (326) T 2h06_A 30 VVTKKFSNQETCVEIGESVRGEDVYIVQS 58 (326) T ss_dssp EEEEECSSSCEEEEECSCCBTCEEEEECC T ss_pred EEEEECCCCCEEEEECCCCCCCCEEEEEC T ss_conf 28898899977888799878985899958 No 69 >1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A* Probab=39.75 E-value=18 Score=15.83 Aligned_cols=28 Identities=7% Similarity=-0.010 Sum_probs=15.4 Q ss_pred EEEEEEECCCEEEEEEECC--CCEEEEECC Q ss_conf 4530110576269999889--984999869 Q gi|254780583|r 5 NIAISLYHDNFCILIHNHK--YRLTAAIDA 32 (256) Q Consensus 5 ~i~ip~~~DNy~YlI~d~~--t~~~viIDp 32 (256) .+.+..|.|-=.|+-..+. ++.+++|-. T Consensus 35 ~~~~~~FpDGE~~v~i~~~vrg~~V~ivqs 64 (317) T 1dku_A 35 KCSVTRFSDGEVQINIEESIRGCDCYIIQS 64 (317) T ss_dssp CEEEEECTTSCEEEEECSCCTTCEEEEECC T ss_pred EEEEEECCCCCEEEEECCCCCCCEEEEEEC T ss_conf 037888899977998788778986999967 No 70 >2ewc_A Conserved hypothetical protein; YJGF proteins family, COG0251, putative translation initiation inhibitor, structural genomics, PSI; 2.15A {Streptococcus pyogenes m1 gas} SCOP: d.79.1.1 Probab=38.80 E-value=11 Score=17.22 Aligned_cols=12 Identities=25% Similarity=0.431 Sum_probs=4.8 Q ss_pred CCCCCEEEECCC Q ss_conf 313770430461 Q gi|254780583|r 129 LCVGDTLFSLGC 140 (256) Q Consensus 129 lFtGDtLF~~g~ 140 (256) +-.||++|.+|+ T Consensus 19 V~~G~~vflsg~ 30 (126) T 2ewc_A 19 VEAGDFYYLNYC 30 (126) T ss_dssp EEETTEEEEEEE T ss_pred EEECCEEEECCC T ss_conf 999999997586 No 71 >2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A* Probab=37.64 E-value=6.6 Score=18.70 Aligned_cols=27 Identities=37% Similarity=0.770 Sum_probs=22.7 Q ss_pred CCCCCCEEEECCCCCCCCCCEEEECCCC Q ss_conf 4567522686146543137704304613 Q gi|254780583|r 114 HTIGHICYHFMNDHFLCVGDTLFSLGCG 141 (256) Q Consensus 114 HT~g~i~~~~~~~~~lFtGDtLF~~g~G 141 (256) |..|.|.+++.++.+..+||| |.-||- T Consensus 127 HDLGKvl~~~ge~QW~vVGDT-fpvGC~ 153 (289) T 2huo_A 127 HDLGKIMALWGEPQWAVVGDT-FPVGCR 153 (289) T ss_dssp TTGGGGGGGGTCCGGGTSSCC-CBSSSC T ss_pred HHHHHHHHCCCCCCCEECCCC-EEECCC T ss_conf 553246420578750332673-042257 No 72 >3k0t_A Endoribonuclease L-PSP, putative; glucose binding, ER stressor, sugar binding protein; HET: BGC; 2.10A {Pseudomonas syringae PV} Probab=37.53 E-value=16 Score=16.22 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=20.5 Q ss_pred CCCCCCCCCCCEEEECCCCCCCCCCEEEECCC-CC------CCCCCHHHHHHHHHHH Q ss_conf 02554456752268614654313770430461-34------4666315677665442 Q gi|254780583|r 109 IATPGHTIGHICYHFMNDHFLCVGDTLFSLGC-GR------IFEDSYAEMFESLEKI 158 (256) Q Consensus 109 i~tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~-Gr------~~~G~~~~l~~Sl~kl 158 (256) +.+|+ .|-.+.-|.+ ++-+|++||.+|. |. +.++..+|..+.++.| T Consensus 23 i~~~~-aP~p~gpYs~---av~~g~~iyvSGqi~~d~~~~~~~~~~~~Q~~~~~~ni 75 (143) T 3k0t_A 23 ITSDK-APAAIGPYSQ---AIKAGNTVYMSGQIPLDPSTMELVEGIEAQITQVFENL 75 (143) T ss_dssp ECCTT-SCCCCSSCCS---EEEETTEEEEEEECSBCTTTCSBCSSHHHHHHHHHHHH T ss_pred ECCCC-CCCCCCCCCC---EEEECCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 76888-9988798778---59999999991516847998570587999999999989 No 73 >2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2 Probab=37.16 E-value=20 Score=15.57 Aligned_cols=30 Identities=13% Similarity=0.076 Sum_probs=21.8 Q ss_pred CHHHHHHHHHHCCCCEEEEEECCCCHHHHC Q ss_conf 989999999985996439998589843300 Q gi|254780583|r 34 DTYIISKMLREKGWFLTHIFNTHHHIDHTR 63 (256) Q Consensus 34 d~~~i~~~l~~~~~~i~~Il~TH~H~DHig 63 (256) --+.+.+.|++.|++-..+++-|.-..-+| T Consensus 14 Tk~~l~~~L~~LGI~~gd~v~vHssl~~~g 43 (273) T 2nyg_A 14 TKQSITEDLKALGLKKGMTVLVHSSLSSIG 43 (273) T ss_dssp CHHHHHHHHHHHTCCTTCEEEEEECSGGGC T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCHHHHC T ss_conf 899999999982989969999975778838 No 74 >2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.5A {Homo sapiens} Probab=35.52 E-value=9.5 Score=17.69 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=35.6 Q ss_pred CCCHHHHCHHHHHHHHCCCEEEECCCCCCCCCC--CCEEEEEHHCCCCCCCCC--CCC----CCCCCCCCCC-EEEECCC Q ss_conf 898433000001111000101200012343233--220331010011112223--310----2554456752-2686146 Q gi|254780583|r 56 HHHIDHTRANLNLKKFFNCTIFGPLEESSKIPG--IDHGLSDGDTFDFGSHPI--KII----ATPGHTIGHI-CYHFMND 126 (256) Q Consensus 56 H~H~DHigg~~~l~~~~~~~v~~~~~~~~~i~~--~~~~l~dgd~i~ig~~~~--~vi----~tPGHT~g~i-~~~~~~~ 126 (256) |+|.-|+.|..--.+....+-.....-..++++ ....++.||.++-|+.-+ +.. ..+--..|-| .+++.+. T Consensus 2 ~~~~~~s~gi~~~~~n~~~~~~~~~~i~aP~~G~V~~i~V~~Gd~V~~G~~l~~iEsmK~~~~v~Ap~~G~V~~i~v~~G 81 (94) T 2jku_A 2 HHHHHHSSGVDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAG 81 (94) T ss_dssp ----------------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC----------------------- T ss_pred CCCCCCCCCCCCCCCEEEECCCCCCEEECCCCCEEEEEECCCCCEECCCCEEEEEECCCCCEEEEECCCEEEEEEEECCC T ss_conf 64334335557777404112786898989999689899818999995898799998036538999388999989986897 Q ss_pred CCCCCCCEEEE Q ss_conf 54313770430 Q gi|254780583|r 127 HFLCVGDTLFS 137 (256) Q Consensus 127 ~~lFtGDtLF~ 137 (256) ..+=.||.||. T Consensus 82 d~V~~G~~L~~ 92 (94) T 2jku_A 82 DTVGEGDLLVE 92 (94) T ss_dssp ----------- T ss_pred CEECCCCEEEE T ss_conf 99799999999 No 75 >3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown function, PSI-2, protein structure initiative; 1.49A {Pseudomonas aeruginosa} Probab=34.36 E-value=16 Score=16.21 Aligned_cols=13 Identities=23% Similarity=0.245 Sum_probs=6.1 Q ss_pred HHHHHHHCCCCEE Q ss_conf 9999998599643 Q gi|254780583|r 38 ISKMLREKGWFLT 50 (256) Q Consensus 38 i~~~l~~~~~~i~ 50 (256) +...|++.|..+. T Consensus 46 i~~~L~~aG~~~~ 58 (122) T 3k12_A 46 IDRLLQSVGSDRG 58 (122) T ss_dssp HHHHHHHTTCCGG T ss_pred HHHHHHHCCCCCC T ss_conf 9999975799611 No 76 >1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes, fatty acid metabolism, structure-based drug design; HET: S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1w93_A Probab=32.53 E-value=24 Score=15.09 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=5.2 Q ss_pred HHHHHHHHHCCC Q ss_conf 999999998599 Q gi|254780583|r 36 YIISKMLREKGW 47 (256) Q Consensus 36 ~~i~~~l~~~~~ 47 (256) +.|++.+++.+. T Consensus 120 ~~Ii~~A~~~~~ 131 (554) T 1w96_A 120 DLIVDIAERADV 131 (554) T ss_dssp HHHHHHHHHTTC T ss_pred HHHHHHHHHHCC T ss_conf 999999999496 No 77 >3gtz_A Putative translation initiation inhibitor; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Salmonella typhimurium} Probab=31.21 E-value=20 Score=15.63 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=7.4 Q ss_pred HHHHHHHCCCCEEE Q ss_conf 99999985996439 Q gi|254780583|r 38 ISKMLREKGWFLTH 51 (256) Q Consensus 38 i~~~l~~~~~~i~~ 51 (256) +.+.|++.|..+.. T Consensus 48 i~~iL~~aG~~~~d 61 (124) T 3gtz_A 48 IDAVLEKQGSSKSR 61 (124) T ss_dssp HHHHHHHTTCCGGG T ss_pred HHHHHHHCCCCHHH T ss_conf 99999985999899 No 78 >2ibn_A Inositol oxygenase; reductase, DIIRON, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: MSE I1N; 1.50A {Homo sapiens} SCOP: a.211.1.4 Probab=31.01 E-value=7.2 Score=18.49 Aligned_cols=27 Identities=37% Similarity=0.794 Sum_probs=19.7 Q ss_pred CCCCCCEEEECCCCCCCCCCEEEECCCC Q ss_conf 4567522686146543137704304613 Q gi|254780583|r 114 HTIGHICYHFMNDHFLCVGDTLFSLGCG 141 (256) Q Consensus 114 HT~g~i~~~~~~~~~lFtGDtLF~~g~G 141 (256) |..|.|.+++.+..+..+||| |.-||- T Consensus 88 HDLGKvl~~~ge~qW~vVGDT-fpvGC~ 114 (250) T 2ibn_A 88 HDLGKVLALFGEPQWAVVGDT-FPVGCR 114 (250) T ss_dssp TTGGGHHHHTTCCGGGTSSCC-CBSSSC T ss_pred HHHHHHHHHCCCCCEEECCCC-CEEECC T ss_conf 677688886378860341674-043057 No 79 >1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism, thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X Probab=30.60 E-value=26 Score=14.89 Aligned_cols=23 Identities=4% Similarity=-0.008 Sum_probs=17.3 Q ss_pred CCCCEEECCCCCHHHHHHHHHHC Q ss_conf 44650201665204588987750 Q gi|254780583|r 162 SDKTHIYFGHEYTENNAYFALSC 184 (256) Q Consensus 162 p~~t~i~pGHeYt~~nl~Fa~~~ 184 (256) ...+++||+.-++.+-..|++.. T Consensus 223 ~k~ivvyC~sG~rA~~~~~~L~~ 245 (271) T 1e0c_A 223 DKEIVTHCQTHHRSGLTYLIAKA 245 (271) T ss_dssp TSEEEEECSSSSHHHHHHHHHHH T ss_pred CCCEEEECCCHHHHHHHHHHHHH T ss_conf 99899988878999999999998 No 80 >1okg_A Possible 3-mercaptopyruvate sulfurtransferase; rhodanese, prolyl isomerase, catalytic triad, serine protease, leishmania pyruvate; HET: CSR; 2.10A {Leishmania major} SCOP: c.46.1.2 c.46.1.2 d.26.1.3 Probab=30.19 E-value=26 Score=14.84 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=36.3 Q ss_pred CCCCCCCCCEEEECCCCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHH----HCCCC--CCEEECCCCCHHHHHHHHHHC Q ss_conf 554456752268614654313770430461344666315677665442----01344--650201665204588987750 Q gi|254780583|r 111 TPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI----KSFSD--KTHIYFGHEYTENNAYFALSC 184 (256) Q Consensus 111 tPGHT~g~i~~~~~~~~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl----~~Lp~--~t~i~pGHeYt~~nl~Fa~~~ 184 (256) -+||=||++.+-+.+ .+ ...+-|+.|- +++++.+-+.++ ...++ .+++|||--.+.+..-|++.. T Consensus 198 r~GHIPGAiniP~~~--~l------~~~~~~~~lk-s~eeLr~~~~~l~~~~g~~~~~~~iI~YCgsG~rAs~~~~aL~~ 268 (373) T 1okg_A 198 MPGHIEGARNLPYTS--HL------VTRGDGKVLR-SEEEIRHNIMTVVQGAGDAADLSSFVFSCGSGVTACINIALVHH 268 (373) T ss_dssp SSSCSTTCEECCGGG--GE------ECCSSSCEEC-CHHHHHHHHHTTCC-----CCCTTSEEECSSSSTHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHH--HC------CCCCCCCEEC-CHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHH T ss_conf 589757853054698--60------2178998559-99999999999997558988899699999639999999999998 No 81 >3lme_A Possible translation initiation inhibitor; structural genomics, RPA2473, PSI-2, protein structure initiative; 2.74A {Rhodopseudomonas palustris} Probab=29.59 E-value=27 Score=14.78 Aligned_cols=12 Identities=33% Similarity=0.274 Sum_probs=6.3 Q ss_pred CCCCCCEEEECC Q ss_conf 431377043046 Q gi|254780583|r 128 FLCVGDTLFSLG 139 (256) Q Consensus 128 ~lFtGDtLF~~g 139 (256) ++-+||++|.+| T Consensus 22 av~~g~~vfvSG 33 (138) T 3lme_A 22 GARAGDFVFIGG 33 (138) T ss_dssp EEEETTEEEEEE T ss_pred EEEECCEEEECC T ss_conf 699999999887 No 82 >3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str} Probab=28.51 E-value=16 Score=16.16 Aligned_cols=77 Identities=18% Similarity=0.332 Sum_probs=42.2 Q ss_pred CCCCHHHHCHHHHHHHHCCCE-EEECCCCCCCCCCCCEEEEEHHCCCCCCCCCCCCC-CC-CCCCCCCEEEECCCCCCCC Q ss_conf 589843300000111100010-12000123432332203310100111122233102-55-4456752268614654313 Q gi|254780583|r 55 THHHIDHTRANLNLKKFFNCT-IFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIA-TP-GHTIGHICYHFMNDHFLCV 131 (256) Q Consensus 55 TH~H~DHigg~~~l~~~~~~~-v~~~~~~~~~i~~~~~~l~dgd~i~ig~~~~~vi~-tP-GHT~g~i~~~~~~~~~lFt 131 (256) .|+|.-|..|-..|.-. +.+ +..++.|.-.+ .-..+..|+.+.+++.++.+.. .| ||- +-+.+ +-. T Consensus 4 ~~~~~~~~~~~~~ly~~-~~~~I~l~p~DNVaV--Al~dl~~G~~v~~~~~~i~l~~~Ip~GHK-----iAl~d---I~~ 72 (105) T 3k3s_A 4 SHHHHHHSSGRENLYFQ-GMQYIKIHALDNVAV--ALADLAEGTEVSVDNQTVTLRQDVARGHK-----FALTD---IAK 72 (105) T ss_dssp ------------------CCSEECCSTTCSEEE--ESSCBCTTCEEEETTEEEECSSCBCTTCE-----EESSC---BCT T ss_pred CCCCCCCCCCHHHCCCC-CCCEEEECCCCCEEE--ECCCCCCCCEEEECCEEEEECCCCCCCCE-----EEEEE---CCC T ss_conf 54222145662102003-688888389998999--67636999999559917998866888899-----98410---379 Q ss_pred CCEEEECC--CCC Q ss_conf 77043046--134 Q gi|254780583|r 132 GDTLFSLG--CGR 142 (256) Q Consensus 132 GDtLF~~g--~Gr 142 (256) ||.+..-| +|+ T Consensus 73 Ge~IiKYG~~IG~ 85 (105) T 3k3s_A 73 GANVIKYGLPIGY 85 (105) T ss_dssp TCEEEETTEEEEE T ss_pred CCEEEECCCEEEE T ss_conf 9975999959388 No 83 >2nnz_A Hypothetical protein; beta-barrel, structural genomics, ontario centre for structural proteomics, OCSP, unknown function; NMR {Archaeoglobus fulgidus dsm 4304} Probab=28.29 E-value=9.4 Score=17.73 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=29.8 Q ss_pred CCCCCEEEECCCC-CCCCCCEEEECCCCCCCCC-CH-HHHHHHHHHHHCCCCCCE Q ss_conf 5675226861465-4313770430461344666-31-567766544201344650 Q gi|254780583|r 115 TIGHICYHFMNDH-FLCVGDTLFSLGCGRIFED-SY-AEMFESLEKIKSFSDKTH 166 (256) Q Consensus 115 T~g~i~~~~~~~~-~lFtGDtLF~~g~Gr~~~G-~~-~~l~~Sl~kl~~Lp~~t~ 166 (256) .+|.|+||-+... ++|-|+|=++.+-+|+-.+ +. ......+++|..+++... T Consensus 93 ~~GDIaywp~g~~iaIfyG~tp~S~~eirlas~vN~~Gki~~~l~~L~~i~~g~~ 147 (153) T 2nnz_A 93 ELGDVAYWIPGKAICLFFGKTPISDDKIRPASAVNVIGRIVNSMEGLKGVADGES 147 (153) T ss_dssp CTTEEEEETTTTEEEEESSCCTTCTTSCCCCSSEEEEEECCSCCCCGGGCCSSEE T ss_pred CCCCEEEECCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHHHHCCCCCE T ss_conf 6672899689998999968845567862237661699997777899961899976 No 84 >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Probab=27.63 E-value=16 Score=16.24 Aligned_cols=99 Identities=17% Similarity=0.196 Sum_probs=51.0 Q ss_pred HHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHHC-------CCEEEECCCC---------------------CCCCCCCC Q ss_conf 9999985996439998589843300000111100-------0101200012---------------------34323322 Q gi|254780583|r 39 SKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF-------NCTIFGPLEE---------------------SSKIPGID 90 (256) Q Consensus 39 ~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~~-------~~~v~~~~~~---------------------~~~i~~~~ 90 (256) .+.+++.++....+.++-.+-. .|...|.+.- ++-+.|..+. ....|+.+ T Consensus 125 ~~~~~~~g~~~~~v~l~Sa~~~--~gi~~l~~~i~~~~~~~~v~vvG~~NvGKSTLiN~L~~~~~~k~~~~~vs~~PGtT 202 (369) T 3ec1_A 125 RRMAEELGLCPVDVCLVSAAKG--IGMAKVMEAINRYREGGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTT 202 (369) T ss_dssp HHHHHTTTCCCSEEEECBTTTT--BTHHHHHHHHHHHHTTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSS T ss_pred HHHHHHCCCCCCEEEECCCCCC--CCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEECCCCCEE T ss_conf 9999875998402676575457--68899999998741586499946887358899987756640356442207999736 Q ss_pred EEEEEHHCCCCCCCCCCCCCCCCC-CCCCCEEEECCCC---------------CCCCCCEEEECCCCCC Q ss_conf 033101001111222331025544-5675226861465---------------4313770430461344 Q gi|254780583|r 91 HGLSDGDTFDFGSHPIKIIATPGH-TIGHICYHFMNDH---------------FLCVGDTLFSLGCGRI 143 (256) Q Consensus 91 ~~l~dgd~i~ig~~~~~vi~tPGH-T~g~i~~~~~~~~---------------~lFtGDtLF~~g~Gr~ 143 (256) ..+. .+.++ ....++.|||= .++++.-++..+. .+..|-+||.||.+|+ T Consensus 203 ~~~~---~i~l~-~~~~l~DTPGi~~~~~~~~~l~~~~lk~l~p~k~i~p~~~~l~~gqsl~igGL~ri 267 (369) T 3ec1_A 203 LDMI---EIPLE-SGATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNEGQTLFFGGLARL 267 (369) T ss_dssp CEEE---EEECS-TTCEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEE T ss_pred EEEE---EEECC-CCCEEEECCCCCCCCHHHHHCCHHHHHHCCCCCCCCCEEEEECCCCEEEEEEEEEE T ss_conf 1179---99969-99889989597876430333899898525877650761899689978998027988 No 85 >2c40_A Inosine-uridine preferring nucleoside hydrolase family protein; spine; 2.2A {Bacillus anthracis} Probab=27.55 E-value=29 Score=14.55 Aligned_cols=54 Identities=9% Similarity=-0.032 Sum_probs=31.7 Q ss_pred EEE--CCC--CHHHHHHHHHHCCCCEEEEEECCC--CHHHHCHHH-HHH---HHCCCEEEECCC Q ss_conf 998--699--989999999985996439998589--843300000-111---100010120001 Q gi|254780583|r 28 AAI--DAP--DTYIISKMLREKGWFLTHIFNTHH--HIDHTRANL-NLK---KFFNCTIFGPLE 81 (256) Q Consensus 28 viI--Dpg--d~~~i~~~l~~~~~~i~~Il~TH~--H~DHigg~~-~l~---~~~~~~v~~~~~ 81 (256) +|| ||| |+-.+.-.+...+++|.+|.+|++ ..+....|. .+. .+.++|||.+.. T Consensus 4 vIiDtD~g~DD~~AL~~al~~p~~~l~gIt~v~GN~~~~~~~~na~~~l~~~g~~~IPV~~G~~ 67 (312) T 2c40_A 4 VYFNHDGGVDDLVSLFLLLQMDNVELTGVSVIPADCYLEPAMSASRKIIDRFGKNTIEVAASNS 67 (312) T ss_dssp EEEEECCSHHHHHHHHHHTTCTTEEEEEEEECSSSSCHHHHHHHHHHHHHHHCCSCCCEEECCC T ss_pred EEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEECCCC T ss_conf 9998999879999999998789988999999059858899999999999982899873751675 No 86 >3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B* Probab=27.17 E-value=23 Score=15.19 Aligned_cols=26 Identities=8% Similarity=-0.129 Sum_probs=19.9 Q ss_pred CCCCHHHHCHHHHHHHHCCC-EEEECC Q ss_conf 58984330000011110001-012000 Q gi|254780583|r 55 THHHIDHTRANLNLKKFFNC-TIFGPL 80 (256) Q Consensus 55 TH~H~DHigg~~~l~~~~~~-~v~~~~ 80 (256) -|.|.||+-++..+.+..++ +||.|. T Consensus 135 VHSH~dHL~ali~~a~~~gv~~V~lH~ 161 (561) T 3igz_B 135 VHSRDNQIYSIIEHAVKDGAKRIRVHA 161 (561) T ss_dssp SSCCHHHHHHHHHHHHHTTCCEEEEEE T ss_pred CCHHHHHHHHHHHHHHHCCCCEEEEEE T ss_conf 421277899999999972996189998 No 87 >2qtd_A Uncharacterized protein MJ0327; NP_247299.1, protein of unknown function, dinitrogenase iron-molybdenum cofactor; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii DSM2661} PDB: 2kla_A Probab=26.63 E-value=30 Score=14.44 Aligned_cols=72 Identities=15% Similarity=0.150 Sum_probs=38.0 Q ss_pred CCCCEEEEEEECCC----E----EEEEEECCCCEEEEECCC-CHHHHHHHHHHCCCCEEEEEECCCCHHHHCHHHHHHHH Q ss_conf 98614530110576----2----699998899849998699-98999999998599643999858984330000011110 Q gi|254780583|r 1 MTSLNIAISLYHDN----F----CILIHNHKYRLTAAIDAP-DTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF 71 (256) Q Consensus 1 m~~~~i~ip~~~DN----y----~YlI~d~~t~~~viIDpg-d~~~i~~~l~~~~~~i~~Il~TH~H~DHigg~~~l~~~ 71 (256) |.+|+|.||.-.+. | -|+|+|-++++...++.. ....-...+.+++. +.|++-+- ..+. ...| +. T Consensus 2 m~~MkIAip~~~~~V~~hFG~a~~F~I~d~~~~~i~~~~~~~~~~~~~~~l~~~gv--d~vI~~~i-G~~a--~~~L-~~ 75 (105) T 2qtd_A 2 MINMKVAISMDVDKISNSFEDCKYFLIVRIDDNEVKSTKVIFNDESGKKSIVKENV--NAIICKNI-SEEN--YKKF-SK 75 (105) T ss_dssp CCCEEEEEEECSSSBCSCTTTCSEEEEEEEETTEEEEEEEEESSHHHHHHHHHTCC--SEEEESCC-CHHH--HHHH-HT T ss_pred CCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCHHHHHHHHCCC--CEEEECCC-CHHH--HHHH-HC T ss_conf 75359999889997367375788899999409969999813897213568986799--89998986-9889--9999-87 Q ss_pred CCCEEEEC Q ss_conf 00101200 Q gi|254780583|r 72 FNCTIFGP 79 (256) Q Consensus 72 ~~~~v~~~ 79 (256) +.+||.. T Consensus 76 -GI~v~~~ 82 (105) T 2qtd_A 76 -KIEIYHA 82 (105) T ss_dssp -TCEEEEC T ss_pred -CCEEEEC T ss_conf -9999981 No 88 >2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Probab=26.33 E-value=14 Score=16.56 Aligned_cols=16 Identities=19% Similarity=0.520 Sum_probs=5.3 Q ss_pred EEEHHCCCCCCCCCCC Q ss_conf 3101001111222331 Q gi|254780583|r 93 LSDGDTFDFGSHPIKI 108 (256) Q Consensus 93 l~dgd~i~ig~~~~~v 108 (256) |.+||.|.+|...+++ T Consensus 122 L~~gD~i~iG~~~l~f 137 (143) T 2kb3_A 122 MQTGDEIQIGKFRLVF 137 (143) T ss_dssp CCTTEEEEETTEEEEE T ss_pred CCCCCEEEECCEEEEE T ss_conf 9999999999999999 No 89 >3glk_A Acetyl-COA carboxylase 2; ATP binding, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase, lipid synthesis, manganese; 2.10A {Homo sapiens} PDB: 3gid_A 2hjw_A Probab=26.18 E-value=31 Score=14.39 Aligned_cols=24 Identities=4% Similarity=-0.013 Sum_probs=13.7 Q ss_pred CEEEEECCC-------CHHHHHHHHHHCCCC Q ss_conf 849998699-------989999999985996 Q gi|254780583|r 25 RLTAAIDAP-------DTYIISKMLREKGWF 48 (256) Q Consensus 25 ~~~viIDpg-------d~~~i~~~l~~~~~~ 48 (256) .+++.|.|+ +.+.|++.+++.+.+ T Consensus 95 d~~~~i~~~~~~~sYL~~~~Ii~~A~~~~~d 125 (540) T 3glk_A 95 DHYVPVPGGPNNNNYANVELIVDIAKRIPVQ 125 (540) T ss_dssp SEEEECCCSSGGGTTTCHHHHHHHHHHTTCS T ss_pred CEEEECCCCCHHHCCCCHHHHHHHHHHHCCC T ss_conf 7898718997353004899999999997939 No 90 >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum 3D7} Probab=25.42 E-value=21 Score=15.43 Aligned_cols=61 Identities=25% Similarity=0.321 Sum_probs=30.8 Q ss_pred CCCCHHHHCHHHH--HHHHCCC-------EEEECCCCC---------------CCCCCCCEEEEEHHCCCCCCCCCCCCC Q ss_conf 5898433000001--1110001-------012000123---------------432332203310100111122233102 Q gi|254780583|r 55 THHHIDHTRANLN--LKKFFNC-------TIFGPLEES---------------SKIPGIDHGLSDGDTFDFGSHPIKIIA 110 (256) Q Consensus 55 TH~H~DHigg~~~--l~~~~~~-------~v~~~~~~~---------------~~i~~~~~~l~dgd~i~ig~~~~~vi~ 110 (256) .|+|.-|..|-.. |++.|.. -+.|..... ...++.+....-+ .+..++..+.++. T Consensus 4 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~V~lvG~~nvGKSSLln~L~~~~~~v~~~~~tT~~~~~~-~~~~~~~~i~l~D 82 (228) T 2qu8_A 4 SHHHHHHSSGRENLYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVG-HFDHKLNKYQIID 82 (228) T ss_dssp ------------------CCSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEE-EEEETTEEEEEEE T ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCEECCCCCEEECCCEE-EEEECCEEEEEEE T ss_conf 644444661266789986889899999999999999859999999848997073899830133379-9998996899962 Q ss_pred CCCCCC Q ss_conf 554456 Q gi|254780583|r 111 TPGHTI 116 (256) Q Consensus 111 tPGHT~ 116 (256) |||... T Consensus 83 tpG~~~ 88 (228) T 2qu8_A 83 TPGLLD 88 (228) T ss_dssp CTTTTT T ss_pred CCCCCC T ss_conf 565334 No 91 >1sa3_A Type II restriction enzyme MSPI; protein-DNA complex, hydrolase/DNA complex; 1.95A {Moraxella SP} SCOP: c.52.1.23 PDB: 1yfi_A Probab=24.87 E-value=32 Score=14.24 Aligned_cols=53 Identities=17% Similarity=0.261 Sum_probs=32.5 Q ss_pred CEEECCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHH---HHHHCCCC Q ss_conf 502016652045889877502344789999999998885789866787899---98728224 Q gi|254780583|r 165 THIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISL---EKKVNPFL 223 (256) Q Consensus 165 t~i~pGHeYt~~nl~Fa~~~~p~n~~~~~~~~~~~~~~~~~~~tvPstl~~---Ek~~NPfl 223 (256) +.| .-|||+++- |+..+.++++.+++.+..-+...+.+..| .+.. |...+|+. T Consensus 124 ~~V-sihEY~v~~--~i~~~~i~dse~~~Li~k~q~~~s~k~Ft---~~~~q~l~e~L~~y~ 179 (262) T 1sa3_A 124 KKV-SIAEYDVET--ICTGVGISDGELKELIRKHQNDQSAKLFT---PVQKQRLTELLEPYR 179 (262) T ss_dssp SCC-EEEEECHHH--HHHHHTCCTTHHHHHHHHHHHHTSSTTSC---HHHHHHHHHHHGGGH T ss_pred EEE-EEECCCHHH--HHHHHCCCHHHHHHHHHHHHCCCHHCCCC---HHHHHHHHHHHHHHH T ss_conf 478-833032876--87752888589999999985022000568---358999999878889 No 92 >1zx8_A Hypothetical protein TM1367; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: 1PE; 1.90A {Thermotoga maritima} SCOP: b.62.1.3 PDB: 2ka0_A Probab=23.50 E-value=33 Score=14.20 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=13.1 Q ss_pred CCCCCEEEECCCC-CCCCCCEEEEC Q ss_conf 5675226861465-43137704304 Q gi|254780583|r 115 TIGHICYHFMNDH-FLCVGDTLFSL 138 (256) Q Consensus 115 T~g~i~~~~~~~~-~lFtGDtLF~~ 138 (256) ..|.|+||.+... ++|-|+|=.++ T Consensus 74 ~~GDiay~~pg~~laifyg~tp~S~ 98 (136) T 1zx8_A 74 EIGDVGYWPPGKALCLFFGKTPMSD 98 (136) T ss_dssp CTTEEEEEGGGTEEEEESSCCTTCS T ss_pred CCCEEEEECCCCEEEEEECCCCCCC T ss_conf 4465999889997999978846778 No 93 >2bz1_A GTP cyclohydrolase II; riboflavin biosynthesis, catalytic zinc, magnesium; 1.54A {Escherichia coli} SCOP: c.144.1.1 PDB: 2bz0_A Probab=23.43 E-value=28 Score=14.69 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=40.6 Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECC----C-------CCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEC Q ss_conf 1122233102554456752268614----6-------5431377043046134466631567766544201344650201 Q gi|254780583|r 101 FGSHPIKIIATPGHTIGHICYHFMN----D-------HFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYF 169 (256) Q Consensus 101 ig~~~~~vi~tPGHT~g~i~~~~~~----~-------~~lFtGDtLF~~g~Gr~~~G~~~~l~~Sl~kl~~Lp~~t~i~p 169 (256) +|.+++.++..+-.-..|+++...+ + ...++||.+....|+ ...++-.||++|..-..-.+||- T Consensus 15 ~G~F~l~~y~~~~~~~~HlALvkGdi~~~~~vLVRVHs~~~~~Dv~~s~~~~-----~~~~L~~al~~I~~~g~Gvlv~l 89 (196) T 2bz1_A 15 WGDFLMVGFEELATGHDHVALVYGDISGHTPVLARVHSECLTGDALFSLRCD-----CGFQLEAALTQIAEEGRGILLYH 89 (196) T ss_dssp TEEEEEEEEEETTTCCEEEEEEESCCCSSSCEEEEEEECCHHHHTSCCSSCS-----HHHHHHHHHHHHHHHTSEEEEEE T ss_pred CCCEEEEEEEECCCCCEEEEEEECCCCCCCCCEEEEEECCCCCCCCCCCCCC-----CCHHHHHHHHHHHHCCCEEEEEE T ss_conf 8548999998289991899999688766888678998625366542366799-----75189999999997598499996 Q ss_pred CCCC Q ss_conf 6652 Q gi|254780583|r 170 GHEY 173 (256) Q Consensus 170 GHeY 173 (256) .+|- T Consensus 90 ~~~~ 93 (196) T 2bz1_A 90 RQEG 93 (196) T ss_dssp CCHH T ss_pred CCCC T ss_conf 6887 No 94 >3f0d_A 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; ssgcid, niaid, isoprene biosynthesis, lyase, metal-binding, structural genomics; 1.20A {Burkholderia pseudomallei} PDB: 3f0e_A 3f0f_A* 3f0g_A* 3ieq_A* 3iew_A* 3jvh_A* 3k14_A* 3k2x_A* 3ke1_A* 3mbm_A* 3ikf_A* 3ike_A* Probab=22.41 E-value=20 Score=15.57 Aligned_cols=62 Identities=21% Similarity=0.222 Sum_probs=40.2 Q ss_pred CCCCHHHHCHHHHHHHHCCCE-E-EECCCCCCCCCCCCEEEEEHHCCCCCCCCCCCC-CCCCCCCCCCEEEE Q ss_conf 589843300000111100010-1-200012343233220331010011112223310-25544567522686 Q gi|254780583|r 55 THHHIDHTRANLNLKKFFNCT-I-FGPLEESSKIPGIDHGLSDGDTFDFGSHPIKII-ATPGHTIGHICYHF 123 (256) Q Consensus 55 TH~H~DHigg~~~l~~~~~~~-v-~~~~~~~~~i~~~~~~l~dgd~i~ig~~~~~vi-~tPGHT~g~i~~~~ 123 (256) .|+|.-|.|-.+...+-++.- + +|.-.|. |.+.+|..+.+|+..+..- -.-||+.|.+.++- T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~RiG~G~D~-------H~~~~g~~l~LGGv~i~~~~gl~gHSDGDVllHA 66 (183) T 3f0d_A 2 AHHHHHHMGTLEAQTQGPGSMDFRIGQGYDV-------HQLVPGRPLIIGGVTIPYERGLLGHSDADVLLHA 66 (183) T ss_dssp --------------------CCEEEEEEEEE-------EEEEETSCEEETTEEECCSEEECSSSCCCHHHHH T ss_pred CCCCCCCCCCHHHCCCCCCCCCEEEEEEEEE-------EEECCCCCEEEEEEEECCCCCCCCCCHHHHHHHH T ss_conf 7432321112200357999752687847996-------5465999789988970798887505728899999 No 95 >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A Probab=22.21 E-value=19 Score=15.76 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=15.8 Q ss_pred CEEEEECCCC-----HHHHHHHHHHCCCCEEEEE Q ss_conf 8499986999-----8999999998599643999 Q gi|254780583|r 25 RLTAAIDAPD-----TYIISKMLREKGWFLTHIF 53 (256) Q Consensus 25 ~~~viIDpgd-----~~~i~~~l~~~~~~i~~Il 53 (256) +.++|||+.+ .+.+.+.+.+.++.+.-++ T Consensus 108 gavlVVDa~~Gv~~qT~~v~~~~~~~~lp~i~~I 141 (529) T 2h5e_A 108 CCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFM 141 (529) T ss_dssp EEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEE T ss_pred EEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE T ss_conf 3699964688742331888877775178707544 No 96 >1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Probab=21.35 E-value=38 Score=13.80 Aligned_cols=30 Identities=13% Similarity=0.190 Sum_probs=24.2 Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHCH Q ss_conf 899999999859964399985898433000 Q gi|254780583|r 35 TYIISKMLREKGWFLTHIFNTHHHIDHTRA 64 (256) Q Consensus 35 ~~~i~~~l~~~~~~i~~Il~TH~H~DHigg 64 (256) .+.+.+.+++.|++|..|+.||.-.--+|+ T Consensus 68 Yd~l~elv~~~GLKi~vVLsfH~cGgnVgd 97 (516) T 1vem_A 68 AQRFAQSVKNAGMKMIPIISTHQCGGNVGD 97 (516) T ss_dssp HHHHHHHHHHTTCEEEEEEECSCBSSSTTC T ss_pred HHHHHHHHHHCCCEEEEEEEECCCCCCCCC T ss_conf 999999999869958999885204787788 No 97 >1x87_A Urocanase protein; structural genomics, protein structure initiative, MCSG, PSI, midwest center for structural genomics; HET: MSE NAD; 2.40A {Geobacillus stearothermophilus} SCOP: e.51.1.1 Probab=20.99 E-value=39 Score=13.75 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=15.6 Q ss_pred HHHHHHHHHCCC---------CEEEEEECCCCHHH Q ss_conf 999999998599---------64399985898433 Q gi|254780583|r 36 YIISKMLREKGW---------FLTHIFNTHHHIDH 61 (256) Q Consensus 36 ~~i~~~l~~~~~---------~i~~Il~TH~H~DH 61 (256) ..+.++|++..- ++..++-||.+.-- T Consensus 61 ~~i~~~L~~l~~deTL~vqSG~Pvg~f~th~~APR 95 (551) T 1x87_A 61 EAIVDTLLRLENDETLLIQSGKPVAVFRTHPDAPR 95 (551) T ss_dssp HHHHHHHHHCCTTEEEEEETTEEEEEEECCTTSCS T ss_pred HHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCE T ss_conf 99999998378764599975983177148999985 Done!