RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62] (256 letters) >gnl|CDD|163252 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). Length = 248 Score = 302 bits (775), Expect = 7e-83 Identities = 97/249 (38%), Positives = 144/249 (57%), Gaps = 3/249 (1%) Query: 6 IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65 I I DN+ L+H+ + A +D + + L +G LT I THHH DH Sbjct: 2 IPIPALSDNYIWLLHDPDGQ-AAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGV 60 Query: 66 LNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN 125 L + F ++GP EE +IPGI H + DGDT G +++A PGHT+GHI Y+ + Sbjct: 61 AELLEAFPAPVYGPAEE--RIPGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPD 118 Query: 126 DHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCD 185 L GDTLFS GCGR+FE + +M++SL+++ + D T +Y HEYT +N FAL+ + Sbjct: 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCAHEYTLSNLRFALTVE 178 Query: 186 PHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVF 245 P N LQ+ +V+++R+Q T PST+ LE+ NPFLR ++ ++R L + A + VF Sbjct: 179 PDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRADDPAVRAALGSQGADPVEVF 238 Query: 246 TELRIRKNQ 254 LR K+ Sbjct: 239 AALRAWKDN 247 >gnl|CDD|178020 PLN02398, PLN02398, hydroxyacylglutathione hydrolase. Length = 329 Score = 222 bits (568), Expect = 5e-59 Identities = 97/229 (42%), Positives = 139/229 (60%) Query: 13 DNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF 72 DN+ L+H+ +D + + L K LT+I NTHHH DHT NL LK + Sbjct: 86 DNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY 145 Query: 73 NCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVG 132 + G + +IPGID L DGD + F H + ++ TPGHT GHI ++F + G Sbjct: 146 GAKVIGSAVDKDRIPGIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTG 205 Query: 133 DTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQ 192 DTLFSL CG++FE + +M SL+KI S D T+IY GHEYT +N+ FALS +P+N LQ Sbjct: 206 DTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYCGHEYTLSNSKFALSIEPNNEVLQ 265 Query: 193 KYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN 241 Y + V +RS+ L T P+T+ +EK NPFLR +T +RK+L++ + ++ Sbjct: 266 SYAAHVAHLRSKGLPTIPTTVKMEKACNPFLRTSSTDIRKSLSIPDTAD 314 >gnl|CDD|182327 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional. Length = 251 Score = 170 bits (432), Expect = 4e-43 Identities = 89/233 (38%), Positives = 128/233 (54%), Gaps = 6/233 (2%) Query: 6 IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65 +I + DN+ ++++ R +D + + + E W IF THHH DH Sbjct: 4 NSIPAFDDNYIWVLNDEAGR-CLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGV 62 Query: 66 LNL-KKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFM 124 L +KF ++GP E K G + DG+T H + ATPGHT+GHICY F Sbjct: 63 KELVEKFPQIVVYGPQETQDK--GTTQVVKDGETAFVLGHEFSVFATPGHTLGHICY-FS 119 Query: 125 NDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSC 184 + C GDTLFS GCGR+FE + ++M++SL+KI + D T I HEYT +N FALS Sbjct: 120 KPYLFC-GDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICCAHEYTLSNMKFALSI 178 Query: 185 DPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNME 237 PH+L + Y KVK +R++N T P + E+++N FLR E+ L +N E Sbjct: 179 LPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRTEDIDLINVINEE 231 >gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase. Length = 258 Score = 156 bits (395), Expect = 8e-39 Identities = 80/251 (31%), Positives = 122/251 (48%), Gaps = 11/251 (4%) Query: 13 DNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF 72 DN+ LI + + A +D D + + E G + + THHH DH N +KK Sbjct: 11 DNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLV 70 Query: 73 -NCTIFGPLEESSKIPGIDHGLSDGDTFDFGSH-PIKIIATPGHTIGHICYHFMN----D 126 ++G + + G H + +GD G I + TP HT GHI Y+ D Sbjct: 71 PGIKVYGGSLD--NVKGCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGED 128 Query: 127 HFLCVGDTLFSLGCGRIFEDSYAEMFESLEK-IKSFSDKTHIYFGHEYTENNAYFALSCD 185 + GDTLF GCG+ FE + +M++SL + S T +Y GHEYT N FAL+ + Sbjct: 129 PAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLKFALTVE 188 Query: 186 PHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVF 245 P N +L++ + R L T PSTI E + NPF+R++ +++ + E S + Sbjct: 189 PDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRVDLPEIQEKVGCE--SPVEAL 246 Query: 246 TELRIRKNQSK 256 E+R K+ K Sbjct: 247 REVRKMKDNWK 257 >gnl|CDD|129082 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor. Length = 183 Score = 101 bits (252), Expect = 2e-22 Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 26/182 (14%) Query: 13 DNFCILIHNHKYRLTAAIDA--PDTYIISKMLREKGWF-LTHIFNTHHHIDHTRANLNLK 69 L+ ID + + L++ G + I TH H DH L Sbjct: 5 GVNSYLVEGDGG--AILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELL 62 Query: 70 KFFNCTIFGP----------------LEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPG 113 + ++ P L + P D L DG+ D G +++I TPG Sbjct: 63 EAPGAPVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPG 122 Query: 114 HTIGHICYHFMNDHFLCVGDTLFSLGCGRIFED----SYAEMFESLEKIKSFSDKTHIYF 169 HT G I + L GD LFS G GR +D S ++ ESL K+ + + + Sbjct: 123 HTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDASASDSLESLLKLLALDPEL-VVP 181 Query: 170 GH 171 GH Sbjct: 182 GH 183 >gnl|CDD|178547 PLN02962, PLN02962, hydroxyacylglutathione hydrolase. Length = 251 Score = 49.4 bits (118), Expect = 8e-07 Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 35/155 (22%) Query: 40 KMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGI---------- 89 +++E G L + NTH H DH LK +K+PG+ Sbjct: 53 SLVKELGLKLIYAMNTHVHADHVTGTGLLK--------------TKLPGVKSIISKASGS 98 Query: 90 --DHGLSDGDTFDFGSHPIKIIATPGHTIGHICY------HFMNDHFLCVGDTLFSLGCG 141 D + GD FG +++ ATPGHT G + Y GD L GCG Sbjct: 99 KADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCG 158 Query: 142 RI-FED-SYAEMFESLE-KIKSFSDKTHIYFGHEY 173 R F+ S ++++S+ +I + T IY H+Y Sbjct: 159 RTDFQGGSSDQLYKSVHSQIFTLPKDTLIYPAHDY 193 >gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional. Length = 304 Score = 31.0 bits (71), Expect = 0.28 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 15/65 (23%) Query: 59 IDHTRAN-LNLKKFFNCTI----------FGPLEESSKIPGIDHGLSDGDTFDFGSHPIK 107 ++ T N L L FFN + PL +++ + HG S + +DF H K Sbjct: 42 VEKTTRNALKLLHFFNSDVPVAQGAAKPLVRPLRDAASV----HGESGMEGYDFPEHTRK 97 Query: 108 IIATP 112 ++ P Sbjct: 98 PLSIP 102 >gnl|CDD|180041 PRK05367, PRK05367, glycine dehydrogenase; Provisional. Length = 954 Score = 30.5 bits (70), Expect = 0.45 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%) Query: 26 LTAAIDAPDTYIISKMLREKGWFLTH-IFNTHH 57 DA + + + +LR +LTH +FN +H Sbjct: 447 DADVADASASALPAALLRTSA-YLTHPVFNRYH 478 >gnl|CDD|161842 TIGR00366, TIGR00366, conserved hypothetical integral membrane protein. Length = 438 Score = 30.6 bits (69), Expect = 0.48 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%) Query: 102 GSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFS 137 GS P+ + ATP + + HI + + +T+FS Sbjct: 153 GSMPL-LAATPNNPLKHIFVELFGRETIPLNETIFS 187 >gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating). Length = 993 Score = 29.7 bits (67), Expect = 0.76 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%) Query: 26 LTAAIDAP--DTYIISKMLREKGWFLTH-IFNTHH 57 TA AP D+ I S + RE +LTH IFN +H Sbjct: 471 FTAESLAPEVDSSIPSSLARE-SPYLTHPIFNQYH 504 >gnl|CDD|162962 TIGR02651, RNase_Z, ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN. Length = 299 Score = 29.1 bits (66), Expect = 1.3 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 25/65 (38%) Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKI 108 + IF TH H DH I G +PG+ +S F P+ I Sbjct: 52 IDRIFITHLHGDH--------------ILG-------LPGLLSTMS----FQGRKEPLTI 86 Query: 109 IATPG 113 PG Sbjct: 87 YGPPG 91 >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional. Length = 389 Score = 28.3 bits (64), Expect = 1.9 Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 4/45 (8%) Query: 187 HNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLR 231 N EL+ +++ + + LE+++ L+ E L+ Sbjct: 9 RNSELE---EQIRQLELKLRDLEAENEKLERELE-RLKSELEKLK 49 >gnl|CDD|179375 PRK02126, PRK02126, ribonuclease Z; Provisional. Length = 334 Score = 28.0 bits (63), Expect = 2.5 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 9/38 (23%) Query: 49 LTHIFNTHHHIDH-------TRANLNLKKFFNCTIFGP 79 ++HIF +H H+DH R L + +FGP Sbjct: 48 ISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLR--LFGP 83 >gnl|CDD|132301 TIGR03257, met_CoM_red_bet, methyl-coenzyme M reductase, beta subunit. Members of this protein family are the beta subunit of methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Length = 433 Score = 27.6 bits (61), Expect = 3.5 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%) Query: 80 LEESSKIPGIDHGLSDGDT--FDFGSHPIKIIATPG 113 LE+ + +PG+D+G +G F F SH I PG Sbjct: 335 LEKETGLPGVDYGRVEGTAVGFSFFSHSIYGGGGPG 370 >gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP. Length = 238 Score = 27.0 bits (60), Expect = 5.5 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 23/95 (24%) Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTI--FGPLEESS-----KIPGI---DHGLSDGDT 98 L I TH+H+DH + L+ I +GP +E K PGI L + Sbjct: 57 LQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPGILDFSKPLEAFEP 116 Query: 99 FDFGSHPIK-------------IIATPGHTIGHIC 120 FD G + ++ T G + ++ Sbjct: 117 FDLGGLRVTPLPLVHSKLTFGYLLETDGQRVAYLT 151 >gnl|CDD|163314 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Length = 393 Score = 26.6 bits (59), Expect = 6.4 Identities = 12/34 (35%), Positives = 16/34 (47%) Query: 64 ANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGD 97 A L F C +F L + S +PG+ G GD Sbjct: 226 AQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGD 259 >gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Length = 402 Score = 26.6 bits (59), Expect = 7.4 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Query: 85 KIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIG 117 K P G+S D FDF + ++ TPG G Sbjct: 344 KTPE---GISSWDFFDFLLYQYHVVGTPGSGFG 373 >gnl|CDD|185044 PRK15087, PRK15087, hemolysin; Provisional. Length = 219 Score = 26.2 bits (58), Expect = 7.6 Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 56 HHHIDHTRANLNLKKFFNCTIF 77 +H I H RA LKKF +C I+ Sbjct: 71 YHAIPHQRAKRWLKKFDHCAIY 92 >gnl|CDD|184109 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional. Length = 371 Score = 26.0 bits (58), Expect = 8.8 Identities = 8/29 (27%), Positives = 14/29 (48%) Query: 28 AAIDAPDTYIISKMLREKGWFLTHIFNTH 56 A D P+ + + LRE+GW ++ Sbjct: 315 VAFDDPNPDEVREKLRERGWRVSVTRCPE 343 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.323 0.137 0.422 Gapped Lambda K H 0.267 0.0677 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 4,068,268 Number of extensions: 246957 Number of successful extensions: 470 Number of sequences better than 10.0: 1 Number of HSP's gapped: 461 Number of HSP's successfully gapped: 28 Length of query: 256 Length of database: 5,994,473 Length adjustment: 91 Effective length of query: 165 Effective length of database: 4,028,145 Effective search space: 664643925 Effective search space used: 664643925 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 56 (25.5 bits)