RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus
Liberibacter asiaticus str. psy62]
         (256 letters)



>gnl|CDD|163252 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase.  Members of
           this protein family are hydroxyacylglutathione
           hydrolase, a detoxification enzyme known as glyoxalase
           II. It follows lactoylglutathione lyase, or glyoxalase
           I, and acts to remove the toxic metabolite methylglyoxal
           and related compounds. This protein belongs to the
           broader metallo-beta-lactamase family (pfam00753).
          Length = 248

 Score =  302 bits (775), Expect = 7e-83
 Identities = 97/249 (38%), Positives = 144/249 (57%), Gaps = 3/249 (1%)

Query: 6   IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65
           I I    DN+  L+H+   +  A +D  +   +   L  +G  LT I  THHH DH    
Sbjct: 2   IPIPALSDNYIWLLHDPDGQ-AAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGV 60

Query: 66  LNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN 125
             L + F   ++GP EE  +IPGI H + DGDT   G    +++A PGHT+GHI Y+  +
Sbjct: 61  AELLEAFPAPVYGPAEE--RIPGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPD 118

Query: 126 DHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCD 185
              L  GDTLFS GCGR+FE +  +M++SL+++ +  D T +Y  HEYT +N  FAL+ +
Sbjct: 119 SPALFCGDTLFSAGCGRLFEGTPEQMYDSLQRLAALPDDTLVYCAHEYTLSNLRFALTVE 178

Query: 186 PHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVF 245
           P N  LQ+   +V+++R+Q   T PST+ LE+  NPFLR ++ ++R  L  + A  + VF
Sbjct: 179 PDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRADDPAVRAALGSQGADPVEVF 238

Query: 246 TELRIRKNQ 254
             LR  K+ 
Sbjct: 239 AALRAWKDN 247


>gnl|CDD|178020 PLN02398, PLN02398, hydroxyacylglutathione hydrolase.
          Length = 329

 Score =  222 bits (568), Expect = 5e-59
 Identities = 97/229 (42%), Positives = 139/229 (60%)

Query: 13  DNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF 72
           DN+  L+H+        +D  +   +   L  K   LT+I NTHHH DHT  NL LK  +
Sbjct: 86  DNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY 145

Query: 73  NCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVG 132
              + G   +  +IPGID  L DGD + F  H + ++ TPGHT GHI ++F     +  G
Sbjct: 146 GAKVIGSAVDKDRIPGIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTG 205

Query: 133 DTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQ 192
           DTLFSL CG++FE +  +M  SL+KI S  D T+IY GHEYT +N+ FALS +P+N  LQ
Sbjct: 206 DTLFSLSCGKLFEGTPEQMLSSLQKIISLPDDTNIYCGHEYTLSNSKFALSIEPNNEVLQ 265

Query: 193 KYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN 241
            Y + V  +RS+ L T P+T+ +EK  NPFLR  +T +RK+L++ + ++
Sbjct: 266 SYAAHVAHLRSKGLPTIPTTVKMEKACNPFLRTSSTDIRKSLSIPDTAD 314


>gnl|CDD|182327 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional.
          Length = 251

 Score =  170 bits (432), Expect = 4e-43
 Identities = 89/233 (38%), Positives = 128/233 (54%), Gaps = 6/233 (2%)

Query: 6   IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65
            +I  + DN+  ++++   R    +D  +   +   + E  W    IF THHH DH    
Sbjct: 4   NSIPAFDDNYIWVLNDEAGR-CLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGV 62

Query: 66  LNL-KKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFM 124
             L +KF    ++GP E   K  G    + DG+T     H   + ATPGHT+GHICY F 
Sbjct: 63  KELVEKFPQIVVYGPQETQDK--GTTQVVKDGETAFVLGHEFSVFATPGHTLGHICY-FS 119

Query: 125 NDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSC 184
             +  C GDTLFS GCGR+FE + ++M++SL+KI +  D T I   HEYT +N  FALS 
Sbjct: 120 KPYLFC-GDTLFSGGCGRLFEGTASQMYQSLKKINALPDDTLICCAHEYTLSNMKFALSI 178

Query: 185 DPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNME 237
            PH+L +  Y  KVK +R++N  T P  +  E+++N FLR E+  L   +N E
Sbjct: 179 LPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRTEDIDLINVINEE 231


>gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase.
          Length = 258

 Score =  156 bits (395), Expect = 8e-39
 Identities = 80/251 (31%), Positives = 122/251 (48%), Gaps = 11/251 (4%)

Query: 13  DNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF 72
           DN+  LI +   +  A +D  D   + +   E G  +  +  THHH DH   N  +KK  
Sbjct: 11  DNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLV 70

Query: 73  -NCTIFGPLEESSKIPGIDHGLSDGDTFDFGSH-PIKIIATPGHTIGHICYHFMN----D 126
               ++G   +   + G  H + +GD    G    I  + TP HT GHI Y+       D
Sbjct: 71  PGIKVYGGSLD--NVKGCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGED 128

Query: 127 HFLCVGDTLFSLGCGRIFEDSYAEMFESLEK-IKSFSDKTHIYFGHEYTENNAYFALSCD 185
             +  GDTLF  GCG+ FE +  +M++SL   + S    T +Y GHEYT  N  FAL+ +
Sbjct: 129 PAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLKFALTVE 188

Query: 186 PHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVF 245
           P N +L++     +  R   L T PSTI  E + NPF+R++   +++ +  E  S +   
Sbjct: 189 PDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRVDLPEIQEKVGCE--SPVEAL 246

Query: 246 TELRIRKNQSK 256
            E+R  K+  K
Sbjct: 247 REVRKMKDNWK 257


>gnl|CDD|129082 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily.  Apart
           from the beta-lactamases a number of other proteins
           contain this domain PUBMED:7588620. These proteins
           include thiolesterases, members of the glyoxalase II
           family, that catalyse the hydrolysis of
           S-D-lactoyl-glutathione to form glutathione and D-lactic
           acid and a competence protein that is essential for
           natural transformation in Neisseria gonorrhoeae and
           could be a transporter involved in DNA uptake. Except
           for the competence protein these proteins bind two zinc
           ions per molecule as cofactor.
          Length = 183

 Score =  101 bits (252), Expect = 2e-22
 Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 26/182 (14%)

Query: 13  DNFCILIHNHKYRLTAAIDA--PDTYIISKMLREKGWF-LTHIFNTHHHIDHTRANLNLK 69
                L+          ID    +   +   L++ G   +  I  TH H DH      L 
Sbjct: 5   GVNSYLVEGDGG--AILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELL 62

Query: 70  KFFNCTIFGP----------------LEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPG 113
           +     ++ P                L   +  P  D  L DG+  D G   +++I TPG
Sbjct: 63  EAPGAPVYAPEGTAELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPG 122

Query: 114 HTIGHICYHFMNDHFLCVGDTLFSLGCGRIFED----SYAEMFESLEKIKSFSDKTHIYF 169
           HT G I  +      L  GD LFS G GR  +D    S ++  ESL K+ +   +  +  
Sbjct: 123 HTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDGGDASASDSLESLLKLLALDPEL-VVP 181

Query: 170 GH 171
           GH
Sbjct: 182 GH 183


>gnl|CDD|178547 PLN02962, PLN02962, hydroxyacylglutathione hydrolase.
          Length = 251

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 43/155 (27%), Positives = 64/155 (41%), Gaps = 35/155 (22%)

Query: 40  KMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGI---------- 89
            +++E G  L +  NTH H DH      LK              +K+PG+          
Sbjct: 53  SLVKELGLKLIYAMNTHVHADHVTGTGLLK--------------TKLPGVKSIISKASGS 98

Query: 90  --DHGLSDGDTFDFGSHPIKIIATPGHTIGHICY------HFMNDHFLCVGDTLFSLGCG 141
             D  +  GD   FG   +++ ATPGHT G + Y                GD L   GCG
Sbjct: 99  KADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCG 158

Query: 142 RI-FED-SYAEMFESLE-KIKSFSDKTHIYFGHEY 173
           R  F+  S  ++++S+  +I +    T IY  H+Y
Sbjct: 159 RTDFQGGSSDQLYKSVHSQIFTLPKDTLIYPAHDY 193


>gnl|CDD|182713 PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.
          Length = 304

 Score = 31.0 bits (71), Expect = 0.28
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 15/65 (23%)

Query: 59  IDHTRAN-LNLKKFFNCTI----------FGPLEESSKIPGIDHGLSDGDTFDFGSHPIK 107
           ++ T  N L L  FFN  +            PL +++ +    HG S  + +DF  H  K
Sbjct: 42  VEKTTRNALKLLHFFNSDVPVAQGAAKPLVRPLRDAASV----HGESGMEGYDFPEHTRK 97

Query: 108 IIATP 112
            ++ P
Sbjct: 98  PLSIP 102


>gnl|CDD|180041 PRK05367, PRK05367, glycine dehydrogenase; Provisional.
          Length = 954

 Score = 30.5 bits (70), Expect = 0.45
 Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)

Query: 26  LTAAIDAPDTYIISKMLREKGWFLTH-IFNTHH 57
                DA  + + + +LR    +LTH +FN +H
Sbjct: 447 DADVADASASALPAALLRTSA-YLTHPVFNRYH 478


>gnl|CDD|161842 TIGR00366, TIGR00366, conserved hypothetical integral membrane
           protein. 
          Length = 438

 Score = 30.6 bits (69), Expect = 0.48
 Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 102 GSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFS 137
           GS P+ + ATP + + HI         + + +T+FS
Sbjct: 153 GSMPL-LAATPNNPLKHIFVELFGRETIPLNETIFS 187


>gnl|CDD|178035 PLN02414, PLN02414, glycine dehydrogenase (decarboxylating).
          Length = 993

 Score = 29.7 bits (67), Expect = 0.76
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 26  LTAAIDAP--DTYIISKMLREKGWFLTH-IFNTHH 57
            TA   AP  D+ I S + RE   +LTH IFN +H
Sbjct: 471 FTAESLAPEVDSSIPSSLARE-SPYLTHPIFNQYH 504


>gnl|CDD|162962 TIGR02651, RNase_Z, ribonuclease Z.  Processing of the 3-prime end
           of tRNA precursors may be the result of endonuclease or
           exonuclease activity, and differs in different species.
           Member of this family are ribonuclease Z, a tRNA 3-prime
           endonuclease that processes tRNAs to prepare for
           addition of CCA. In species where all tRNA sequences
           already have the CCA tail, such as E. coli, the need for
           such an enzyme is unclear. Protein similar to the E.
           coli enzyme, matched by TIGR02649, are designated
           ribonuclease BN.
          Length = 299

 Score = 29.1 bits (66), Expect = 1.3
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 25/65 (38%)

Query: 49  LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKI 108
           +  IF TH H DH              I G       +PG+   +S    F     P+ I
Sbjct: 52  IDRIFITHLHGDH--------------ILG-------LPGLLSTMS----FQGRKEPLTI 86

Query: 109 IATPG 113
              PG
Sbjct: 87  YGPPG 91


>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
           Provisional.
          Length = 389

 Score = 28.3 bits (64), Expect = 1.9
 Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 187 HNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLR 231
            N EL+    +++ +  +          LE+++   L+ E   L+
Sbjct: 9   RNSELE---EQIRQLELKLRDLEAENEKLERELE-RLKSELEKLK 49


>gnl|CDD|179375 PRK02126, PRK02126, ribonuclease Z; Provisional.
          Length = 334

 Score = 28.0 bits (63), Expect = 2.5
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 9/38 (23%)

Query: 49 LTHIFNTHHHIDH-------TRANLNLKKFFNCTIFGP 79
          ++HIF +H H+DH        R  L   +     +FGP
Sbjct: 48 ISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLR--LFGP 83


>gnl|CDD|132301 TIGR03257, met_CoM_red_bet, methyl-coenzyme M reductase, beta
           subunit.  Members of this protein family are the beta
           subunit of methyl coenzyme M reductase, also called
           coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). This
           enzyme, with alpha, beta, and gamma subunits, catalyzes
           the last step in methanogenesis. Several methanogens
           have encode two such enzymes, designated I and II; this
           model does not separate the isozymes.
          Length = 433

 Score = 27.6 bits (61), Expect = 3.5
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)

Query: 80  LEESSKIPGIDHGLSDGDT--FDFGSHPIKIIATPG 113
           LE+ + +PG+D+G  +G    F F SH I     PG
Sbjct: 335 LEKETGLPGVDYGRVEGTAVGFSFFSHSIYGGGGPG 370


>gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP.  This family
           of proteins found in operons encoding phosphonate C-P
           lyase systems as is observed in E. coli and is a member
           of the metallo-beta-lactamase superfamily (pfam00753).
           As defined by this model, all instances of this protein
           are associated with the C-P lyase, but not all genomes
           containing the C-P lyase system contain phnP.
          Length = 238

 Score = 27.0 bits (60), Expect = 5.5
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 23/95 (24%)

Query: 49  LTHIFNTHHHIDHTRANLNLKKFFNCTI--FGPLEESS-----KIPGI---DHGLSDGDT 98
           L  I  TH+H+DH +    L+      I  +GP +E       K PGI      L   + 
Sbjct: 57  LQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPDEEGCDDLFKHPGILDFSKPLEAFEP 116

Query: 99  FDFGSHPIK-------------IIATPGHTIGHIC 120
           FD G   +              ++ T G  + ++ 
Sbjct: 117 FDLGGLRVTPLPLVHSKLTFGYLLETDGQRVAYLT 151


>gnl|CDD|163314 TIGR03538, DapC_gpp, succinyldiaminopimelate transaminase.  This
           family of succinyldiaminopimelate transaminases (DapC)
           includes the experimentally characterized enzyme from
           Bordatella pertussis. The majority of genes in this
           family are proximal to genes encoding components of the
           lysine biosynthesis via diaminopimelate pathway
           (GenProp0125).
          Length = 393

 Score = 26.6 bits (59), Expect = 6.4
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 64  ANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGD 97
           A L    F  C +F  L + S +PG+  G   GD
Sbjct: 226 AQLGRDDFRRCLVFHSLSKRSNLPGLRSGFVAGD 259


>gnl|CDD|163316 TIGR03542, DAPAT_plant, LL-diaminopimelate aminotransferase.  This
           clade of the pfam00155 superfamily of aminotransferases
           includes several which are adjacent to elements of the
           lysine biosynthesis via diaminopimelate pathway
           (GenProp0125). This clade includes characterized species
           in plants and Chlamydia. Every member of this clade is
           from a genome which possesses most of the lysine
           biosynthesis pathway but lacks any of the known
           succinylases, desuccinylases, acetylases or deacetylases
           typical of the acylated versions of this pathway nor do
           they have the direct, NADPH-dependent enzyme (ddh).
          Length = 402

 Score = 26.6 bits (59), Expect = 7.4
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 85  KIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIG 117
           K P    G+S  D FDF  +   ++ TPG   G
Sbjct: 344 KTPE---GISSWDFFDFLLYQYHVVGTPGSGFG 373


>gnl|CDD|185044 PRK15087, PRK15087, hemolysin; Provisional.
          Length = 219

 Score = 26.2 bits (58), Expect = 7.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 56 HHHIDHTRANLNLKKFFNCTIF 77
          +H I H RA   LKKF +C I+
Sbjct: 71 YHAIPHQRAKRWLKKFDHCAIY 92


>gnl|CDD|184109 PRK13520, PRK13520, L-tyrosine decarboxylase; Provisional.
          Length = 371

 Score = 26.0 bits (58), Expect = 8.8
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 28  AAIDAPDTYIISKMLREKGWFLTHIFNTH 56
            A D P+   + + LRE+GW ++      
Sbjct: 315 VAFDDPNPDEVREKLRERGWRVSVTRCPE 343


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.323    0.137    0.422 

Gapped
Lambda     K      H
   0.267   0.0677    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,068,268
Number of extensions: 246957
Number of successful extensions: 470
Number of sequences better than 10.0: 1
Number of HSP's gapped: 461
Number of HSP's successfully gapped: 28
Length of query: 256
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,028,145
Effective search space: 664643925
Effective search space used: 664643925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.5 bits)