RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus
Liberibacter asiaticus str. psy62]
(256 letters)
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative,
CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear
center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2
PDB: 2q42_A
Length = 254
Score = 188 bits (478), Expect = 9e-49
Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 1/248 (0%)
Query: 8 ISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLN 67
+ DN+ ++H+ +D + I L+ G LT+I NTHHH DHT NL
Sbjct: 6 VPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLE 65
Query: 68 LKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDH 127
LK + + G + +IPGID L DGD + F H + ++ TPGHT GHI +F
Sbjct: 66 LKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSR 125
Query: 128 FLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPH 187
+ GDT+FSL CG++FE + +M SL+KI S D T IY GHEYT +N+ FALS +P+
Sbjct: 126 AIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFALSLEPN 185
Query: 188 NLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN-LAVFT 246
N LQ Y + V +RS+ L T P+T+ +EK NPFLR NT +R+ L + A++
Sbjct: 186 NEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALG 245
Query: 247 ELRIRKNQ 254
+R K+
Sbjct: 246 IIRKAKDD 253
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GTT GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 188 bits (477), Expect = 1e-48
Identities = 75/255 (29%), Positives = 117/255 (45%), Gaps = 10/255 (3%)
Query: 8 ISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLN 67
+ DN+ L+ + + + A +D + R+ G LT + THHH DH N
Sbjct: 6 LPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEK 65
Query: 68 LKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND- 126
L K + ++ +I + H ++ T GS +K +ATP HT GHICY
Sbjct: 66 LVKLESGLKVYGGDD--RIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPG 123
Query: 127 ----HFLCVGDTLFSLGCGRIFEDSYAEMF-ESLEKIKSFSDKTHIYFGHEYTENNAYFA 181
+ GDTLF GCG+ +E + EM LE + T +Y GHEYT NN FA
Sbjct: 124 GSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFA 183
Query: 182 LSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN 241
+P N +++ + K S T PST++ E NPF+R+ +++++
Sbjct: 184 RHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVREKTVQQHAGE--TDP 241
Query: 242 LAVFTELRIRKNQSK 256
+ +R K+Q K
Sbjct: 242 VTTMRAVRREKDQFK 256
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- lactamase superfamily;
1.45A {Salmonella typhimurium LT2} SCOP: d.157.1.2
Length = 258
Score = 148 bits (374), Expect = 1e-36
Identities = 95/258 (36%), Positives = 136/258 (52%), Gaps = 9/258 (3%)
Query: 1 MTSLNI-AISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHI 59
+ S+N+ +I + DN+ ++ N + R +D + + K + E W IF THHH
Sbjct: 5 IGSMNLNSIPAFQDNYIWVLTNDEGR-CVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHH 63
Query: 60 DHT-RANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGH 118
DH L+ F T++GP ++ G H + DGDT + ATPGHT+GH
Sbjct: 64 DHVGGVKELLQHFPQMTVYGP--AETQDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGH 121
Query: 119 ICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNA 178
+CY +L GDTLFS GCGR+FE + ++M++SL KI S D T I HEYT N
Sbjct: 122 VCYFS--RPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTLICCAHEYTLANI 179
Query: 179 YFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMEN 238
FALS PH+ + +Y KVK +R + T P + E+K+N FLR E+ L +N E
Sbjct: 180 KFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKET 239
Query: 239 --ASNLAVFTELRIRKNQ 254
A F LR +K+
Sbjct: 240 ILQQPEARFAWLRSKKDT 257
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
hydrolase; HET: SPD; 1.80A {Leishmania infantum} PDB:
2p1e_A*
Length = 311
Score = 137 bits (346), Expect = 2e-33
Identities = 64/280 (22%), Positives = 111/280 (39%), Gaps = 35/280 (12%)
Query: 1 MTSLNI-AISLYHDNFCILIHNHKYRLTAAIDAP----------DTYIISKMLREKGWFL 49
++ ++ + DNF LI++H AA+D + ++ + + +
Sbjct: 26 GSAFSVTVVPTLKDNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTF 85
Query: 50 THIFNTHHHIDHTRANLNLKKFFNCTI-----FGPLEESSKIPGIDHGLSDGDTFDFGSH 104
+ I +TH H DH+ N LK + IP + + +GD G
Sbjct: 86 STILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDSIPAVTKPVREGDRVQVGDL 145
Query: 105 PIKIIATPGHTIGHICYHFMND------HFLCVGDTLFSLGCGRIFEDSYAEMFESLE-- 156
+++I P HT GH+ Y + L GDT+F G G FE +M ++E
Sbjct: 146 SVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMFIAGIGAFFEGDEKDMCRAMEKV 205
Query: 157 ------KIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLE-----LQKYCSKVKSMRSQN 205
+ T I+ GHEYT F+ P +Q +K +
Sbjct: 206 YHIHKGNDYALDKVTFIFPGHEYTSGFMTFSEKTFPDRASDDLAFIQAQRAKYAAAVKTG 265
Query: 206 LYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVF 245
+ PS+++ EK+ N FLR+ + + +N NA L ++
Sbjct: 266 DPSVPSSLAEEKRQNLFLRVADPAFVAKMNQGNAHALMMY 305
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 121 bits (306), Expect = 1e-28
Identities = 54/241 (22%), Positives = 86/241 (35%), Gaps = 59/241 (24%)
Query: 6 IAISLYHDNFCILIHNHKYRLTAAID-APDTYIISKMLREKGWFLTHIFNTHHHIDHTRA 64
I ++ + N C LI + RL A +D D I + + G L I TH H+DH A
Sbjct: 6 IPVTAFSQN-CSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGA 64
Query: 65 NLNLKKFFNCTIFGPLEE------------------SSKIPGIDHGLSDGDTFDFGSHPI 106
L + + + GP +E + D L+DGD G+ +
Sbjct: 65 ASELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVGNVTL 124
Query: 107 KIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI--FEDSYAEMFESL-EKIKSFSD 163
+++ PGHT GH+ + L GD +F G GR + ++ +++ K+ D
Sbjct: 125 QVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLLPLGD 184
Query: 164 KTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFL 223
GH ST+ E+ NPFL
Sbjct: 185 DVTFIPGHGPL------------------------------------STLGYERLHNPFL 208
Query: 224 R 224
+
Sbjct: 209 Q 209
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, hydrolase; HET: BDS; 1.80A
{Pseudomonas aeruginosa} SCOP: d.157.1.1 PDB: 1dd6_A*
1vgn_A* 2doo_A* 1wup_A 1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 94.5 bits (234), Expect = 2e-20
Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 5/159 (3%)
Query: 28 AAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEE---SS 84
A DT + E+G+ + ++H H D T L T L
Sbjct: 49 TPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKK 108
Query: 85 KIPGIDHGLSDGDTFDFGSHPIKII-ATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI 143
G + + I++ PGHT ++ L G + G G +
Sbjct: 109 DGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNL 168
Query: 144 FEDSYAEMFESLEKIKS-FSDKTHIYFGHEYTENNAYFA 181
+ + +S + +KS + + H + +
Sbjct: 169 GDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLK 207
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
2q0i_A 3dh8_A*
Length = 303
Score = 94.0 bits (233), Expect = 3e-20
Identities = 29/193 (15%), Positives = 55/193 (28%), Gaps = 37/193 (19%)
Query: 49 LTHIFNTHHHIDHT-RANLNLKKFFNCTIFGP---------------------------- 79
+ + TH H DH + N +
Sbjct: 64 VHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQ 123
Query: 80 --LEESSKIPGIDHGLSDGDTFDFGSHP-IKIIATPGHTIGHICYHFMNDHFLCVGDTLF 136
E + ++DG+ + G +++I GH+ H+ ++ + L GD L
Sbjct: 124 RLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALG 183
Query: 137 SLGCGRI-----FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLEL 191
D ESLE+++ + GH A + E
Sbjct: 184 EFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQLIPGHGGLLRGRLAADGAESAYTEC 243
Query: 192 QKYCSKVKSMRSQ 204
+ C ++ +S
Sbjct: 244 LRLCRRLLWRQSM 256
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic
encephalopathy, ETHE1, structural genomics, protein
structure initiative; 1.48A {Arabidopsis thaliana}
Length = 245
Score = 93.9 bits (232), Expect = 3e-20
Identities = 48/210 (22%), Positives = 67/210 (31%), Gaps = 13/210 (6%)
Query: 28 AAIDA--PDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSK 85
ID K++ E G L + NTH H DH LK +
Sbjct: 31 LLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKA--S 88
Query: 86 IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICY------HFMNDHFLCVGDTLFSLG 139
D L GD G +++ ATPGHT G + Y GD + G
Sbjct: 89 GSKADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIRG 148
Query: 140 CGRIFEDSYAE---MFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCS 196
CGR + +I + T IY H+Y HN L K
Sbjct: 149 CGRTDFQEGSSDQLYESVHSQIFTLPKDTLIYPAHDYKGFEVSTVGEEMQHNPRLTKDKE 208
Query: 197 KVKSMRSQNLYTNPSTISLEKKVNPFLRIE 226
K++ S + P I + N ++
Sbjct: 209 TFKTIMSNLNLSYPKMIDVAVPANMVCGLQ 238
>2whg_A VIM-4 metallo-beta-lactamase; hydrolase, alpha-beta/BETA-alpha
fold; HET: FLC; 1.90A {Pseudomonas aeruginosa} PDB:
2wrs_A* 1ko3_A 1ko2_A
Length = 230
Score = 87.4 bits (216), Expect = 3e-18
Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 21/180 (11%)
Query: 9 SLYHDNFCILIHNHKYRLTAAIDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTR 63
++Y N I+ + ID +++++ ++ G +T +TH H D
Sbjct: 34 AVYPSNGLIVRDGDE---LLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVG 90
Query: 64 ANLNLKKFFNCTIFGPLEE--------SSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHT 115
L+ T P ++ S GD FG H+
Sbjct: 91 GVDVLRAAGVATYASPSTRRLAEAEGNEIPTHSLEGLSSSGDAVRFGPV-ELFYPGAAHS 149
Query: 116 IGHICYHFMNDHFLCVGDTLFSLG---CGRIFEDSYAEMFESLEKIKS-FSDKTHIYFGH 171
++ + + + L G + L G + + AE S+E+I+ + + + GH
Sbjct: 150 TDNLVVYVPSANVLYGGCAVHELSRTSAGNVADADLAEWPTSVERIQKHYPEAEVVIPGH 209
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 87.4 bits (216), Expect = 3e-18
Identities = 27/175 (15%), Positives = 52/175 (29%), Gaps = 17/175 (9%)
Query: 11 YHDNFCILIHNHKYRLTAAIDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRAN 65
Y N L+ D P ++ + + + +F TH H D
Sbjct: 29 YSANSMYLVTKKG---VVLFDVPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDL 85
Query: 66 LNLKK----FFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKII-ATPGHTIGHIC 120
+ + + G + G + GHT ++
Sbjct: 86 SFFNNKGIKTYATAKTNEFLKKDGKATSTEIIKTGKPYRIGGEEFVVDFLGEGHTADNVV 145
Query: 121 YHFMNDHFLCVGDTLFSLGCGRI---FEDSYAEMFESLEKIKS-FSDKTHIYFGH 171
F + L G + S + E + + +++ K+K+ +S T I GH
Sbjct: 146 VWFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAKYSKATLIIPGH 200
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER assymmetric UNIT., hydrolase; HET: GOL;
1.65A {Fluoribacter gormanii} SCOP: d.157.1.1 PDB:
1jt1_A* 1l9y_A
Length = 263
Score = 86.1 bits (212), Expect = 6e-18
Identities = 34/216 (15%), Positives = 64/216 (29%), Gaps = 41/216 (18%)
Query: 11 YHDNFCILIHNHKYRLTAAIDA---PDTYIISKMLREKGWF---LTHIFNTHHHIDHTRA 64
D LI + + I++ + +I +++ G+ + +H H DH
Sbjct: 22 TDDLASYLIVTPRGNI--LINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAG 79
Query: 65 NLNLKKFFNCTIFGPLEESSKI--------------------PGIDHGLSDGDTFDFGSH 104
+ +K+ E+ S I +D L DG+ + G
Sbjct: 80 SELIKQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGT 139
Query: 105 PIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI----------FEDSYAEMFES 154
+ TPGHT G + + G + + S
Sbjct: 140 VLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHS 199
Query: 155 LEKIKSFSDKTHIYFGH--EYTENNAYFALSCDPHN 188
++ ++S H + N Y LS +N
Sbjct: 200 IKVLESMRCDI-FLGSHAGMFDLKNKYVLLSKGQNN 234
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 84.7 bits (209), Expect = 2e-17
Identities = 35/179 (19%), Positives = 54/179 (30%), Gaps = 42/179 (23%)
Query: 30 IDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEE------- 82
IDA + I+ L +I TH HIDH L + + +
Sbjct: 34 IDAGVSNSIADFSFLDK--LDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGFKKYLTSE 91
Query: 83 -------------------------SSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIG 117
+ + FD G + +++I TPGH
Sbjct: 92 DGLKKLNESAEKVLGDLYYVYGGLEKKLDQDKVIEVEGNEEFDLGGYRMRLIYTPGHARH 151
Query: 118 HICYHFMNDHFLCVGDTLFSLGCGRIFED-----SYAEMFESLEKIKSFSDKTHIYFGH 171
H+ D FL GD+ + G + Y ESL++ K + F H
Sbjct: 152 HMSVLV--DDFLFTGDSAGAYFNGVVIPTTPPVIDYKMYMESLKRQIELKPKV-VGFAH 207
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus}
Length = 207
Score = 83.1 bits (204), Expect = 6e-17
Identities = 39/228 (17%), Positives = 68/228 (29%), Gaps = 54/228 (23%)
Query: 13 DNFCILIHNHKYRLTAAIDA-PDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF 71
L+ + ID + + + + G I TH H DH A L +
Sbjct: 12 QENAYLVETGEG--PVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEA 69
Query: 72 FNCTIFGPLEESSKIPGIDHGLS-------------DGDTFDFGSHPIKIIATPGHTIGH 118
+ ++ + G D +++ PGH+ GH
Sbjct: 70 LDLPVYLHPLDLPLYEGADLAARAWGLAIPKPPLPVRPLEEGMRLFGFQVLHLPGHSPGH 129
Query: 119 ICYHFMNDHFLCVGDTLFSLGCGRI--FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTEN 176
+ ++ + GD LF GR +F SL+++ S +T ++ GH
Sbjct: 130 VAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRLLSLPPETRVHPGHGP--- 186
Query: 177 NAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLR 224
+T+ LE + NPFL
Sbjct: 187 ---------------------------------GTTLGLEARTNPFLT 201
>2gmn_A Metallo-beta-lactamase; hydrolase; 1.40A {Bradyrhizobium japonicum
usda 110} SCOP: d.157.1.1
Length = 274
Score = 76.6 bits (187), Expect = 5e-15
Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 33/192 (17%)
Query: 30 IDA---PDTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES 83
+D T +I + + G+ + I NTH H+DHT +KK + +
Sbjct: 49 MDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDK 108
Query: 84 SKIPG------------------IDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN 125
+ G +D + +GD G + ATPGH+ G +
Sbjct: 109 PLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTV 168
Query: 126 DH--------FLCVGDTLFSLGCGRI-FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTEN 176
F C G + G+ + + + K K+ + E
Sbjct: 169 KDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAMKIDVLLGPHPEVYGM 228
Query: 177 NAYFALSCDPHN 188
A A D
Sbjct: 229 QAKRAEMKDGAP 240
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 76.6 bits (187), Expect = 5e-15
Identities = 21/185 (11%), Positives = 43/185 (23%), Gaps = 27/185 (14%)
Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI------------------PGID 90
L I +H H DH LK+ + E + + D
Sbjct: 77 LRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGDGITYPPANAD 136
Query: 91 HGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI------- 143
+ DG+ G GHT G + + + ++
Sbjct: 137 RIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGN 196
Query: 144 --FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSM 201
+ + S +++ + + + L + Y +
Sbjct: 197 PRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDYAAGARAGAKALTCKAYADAAEQK 256
Query: 202 RSQNL 206
L
Sbjct: 257 FDGQL 261
>1ko3_A VIM-2 metallo-beta-lactamase; alpha-beta/BETA-alpha fold,
hydrolase; 1.91A {Pseudomonas aeruginosa} SCOP:
d.157.1.1 PDB: 1ko2_A
Length = 230
Score = 76.4 bits (187), Expect = 5e-15
Identities = 30/180 (16%), Positives = 61/180 (33%), Gaps = 21/180 (11%)
Query: 9 SLYHDNFCILIHNHKYRLTAAIDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTR 63
++Y N I+ + ID +++++ ++ G +T +TH H D
Sbjct: 34 AVYPSNGLIVRDGDE---LLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVG 90
Query: 64 ANLNLKKFFNCTIFGPLEE--------SSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHT 115
L+ T P ++ S GD FG H+
Sbjct: 91 GVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPV-ELFYPGAAHS 149
Query: 116 IGHICYHFMNDHFLCVGDTLFS---LGCGRIFEDSYAEMFESLEKIKS-FSDKTHIYFGH 171
++ + + L G ++ G + + AE S+E+I+ + + + GH
Sbjct: 150 TDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGH 209
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding,
periplasm,; HET: SDF; 1.41A {Aeromonas hydrophila} PDB:
1x8i_A 3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A*
3f9o_A
Length = 227
Score = 74.4 bits (182), Expect = 2e-14
Identities = 28/169 (16%), Positives = 52/169 (30%), Gaps = 28/169 (16%)
Query: 30 IDAPDTYIISKMLREK-----GWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGP----- 79
+ A T ++ L + + + NT++H D N K +
Sbjct: 37 VGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDL 96
Query: 80 ---------------LEESSKIPGIDHGLSDGDTFDFGSHPIKII-ATPGHTIGHICYHF 123
L E +P + + F ++ A P HT I +F
Sbjct: 97 MKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYF 156
Query: 124 MNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFS-DKTHIYFGH 171
++ L G L G + ++LE++K+ + GH
Sbjct: 157 PDEQVLYGGCILKE-KLGNLSFADVKAYPQTLERLKAMKLPIKTVIGGH 204
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 74.5 bits (182), Expect = 2e-14
Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 14/156 (8%)
Query: 30 IDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF----FNCTIFGPL 80
ID P ++ ++ G + TH H D K ++ + +
Sbjct: 41 IDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSI 100
Query: 81 EESSKIPGIDHGLSDGDTFDFGSHPIKIIAT-PGHTIGHICYHFMNDHFLCVGDTLFSLG 139
P + + +F G ++ GHT ++ F + L G + S
Sbjct: 101 LAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSAD 160
Query: 140 CGRI---FEDSYAEMFESLEKIKS-FSDKTHIYFGH 171
+ E + +S+ I+ FS ++ GH
Sbjct: 161 SKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGH 196
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 68.0 bits (165), Expect = 2e-12
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 14/156 (8%)
Query: 30 IDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES- 83
+D P +++ + +T H H D L++ + +
Sbjct: 51 LDTPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDL 110
Query: 84 ---SKIPGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVGDTLFS-- 137
+P +HG +D T P++ GH +I ++ L G L
Sbjct: 111 AKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQ 170
Query: 138 -LGCGRIFEDSYAEMFESLEKIKS-FSDKTHIYFGH 171
G I + ++L+K+K+ F ++ GH
Sbjct: 171 TTSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGH 206
>2q0i_A Quinolone signal response protein; quorum sensing, pseudomonas
quinolone signal, PQS, metall- beta-lactamase, iron,
phosphodiesterase; 1.57A {Pseudomonas aeruginosa} SCOP:
d.157.1.14 PDB: 2q0j_A 3dh8_A*
Length = 303
Score = 67.3 bits (163), Expect = 3e-12
Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 37/192 (19%)
Query: 49 LTHIFNTHHHIDHTRANL-NLKKFFNCTIFGP---------------------------- 79
+ + TH H DH + N +
Sbjct: 64 VHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQ 123
Query: 80 --LEESSKIPGIDHGLSDGDTFDFGSHP-IKIIATPGHTIGHICYHFMNDHFLCVGDTLF 136
E + ++DG+ + G +++I GH+ H+ ++ + L GD L
Sbjct: 124 RLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALG 183
Query: 137 SLGCGRI-----FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLEL 191
D ESLE+++ + GH A + E
Sbjct: 184 EFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQLIPGHGGLLRGRLAADGAESAYTEC 243
Query: 192 QKYCSKVKSMRS 203
+ C ++ +S
Sbjct: 244 LRLCRRLLWRQS 255
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
2bfz_A 2bg6_A 2bga_A ...
Length = 227
Score = 67.2 bits (163), Expect = 4e-12
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 14/156 (8%)
Query: 30 IDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF----FNCTIFGPL 80
+D+ +I + ++ +T + TH H D LK+ + + L
Sbjct: 55 VDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAEL 114
Query: 81 EESSKIPGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVGDTLFSLG 139
+ + L FG+ ++ GHT +I + L G + S
Sbjct: 115 AKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTS 174
Query: 140 ---CGRIFEDSYAEMFESLEKI-KSFSDKTHIYFGH 171
G + + E S+E + K + + + GH
Sbjct: 175 AKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGH 210
>2yz3_A Metallo-beta-lactamase; enzyme-inhibitor complex, hydrolase; HET:
M5P; 2.30A {Pseudomonas putida} SCOP: d.157.1.1
Length = 266
Score = 65.0 bits (157), Expect = 1e-11
Identities = 18/146 (12%), Positives = 47/146 (32%), Gaps = 13/146 (8%)
Query: 38 ISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGD 97
++++ ++ G +T +TH H D ++ + + + +
Sbjct: 96 LAEIEKQIGLPVTRAVSTHFHDDRVGGV-DVLRAAGVATYASPSTRRLAEVEGNEIPTHS 154
Query: 98 TFDFGSHPIKI--------IATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI---FED 146
S + H+ ++ + + L G ++ L +
Sbjct: 155 LEGLSSSGDAVRFGPVELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADA 214
Query: 147 SYAEMFESLEKIKS-FSDKTHIYFGH 171
AE S+E+I+ + + + GH
Sbjct: 215 DLAEWPTSIERIQQHYPEAQFVIPGH 240
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein structure
initiative, PSI, joint center for structural genomics;
HET: MSE; 1.80A {Thermotoga maritima} SCOP: c.23.5.1
d.157.1.3
Length = 410
Score = 63.2 bits (153), Expect = 5e-11
Identities = 21/143 (14%), Positives = 36/143 (25%), Gaps = 13/143 (9%)
Query: 27 TAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLE 81
ID + + +THI H DH+ + K +
Sbjct: 63 NVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIAS 122
Query: 82 ESSKI-------PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDT 134
K + DG+ + G K + TP +++ D
Sbjct: 123 NFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYLDGILFS-CDV 181
Query: 135 LFSLGCGRIFEDSYAEMFESLEK 157
I +DS + E
Sbjct: 182 GGGYLLPEILDDSNESVVERYLP 204
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 62.9 bits (152), Expect = 7e-11
Identities = 21/151 (13%), Positives = 36/151 (23%), Gaps = 14/151 (9%)
Query: 27 TAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNL-KKFFNCTIFGP- 79
ID+ + L + ++ H DH + + KF N T
Sbjct: 51 PTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHKFTNATFVCTK 110
Query: 80 ------LEESSKIPGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVG 132
+ D T G +K I P H + D L
Sbjct: 111 KCQEHLKILYGMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHWPDSTFTYCPEDKILFSN 170
Query: 133 DTLFSLGCGRIFEDSYAEMFESLEKIKSFSD 163
D ++ + K ++
Sbjct: 171 DGFGQHYATSRRWADECDVSHVMHLFKEYTA 201
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 61.4 bits (148), Expect = 2e-10
Identities = 20/157 (12%), Positives = 37/157 (23%), Gaps = 21/157 (13%)
Query: 27 TAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNL-KKFFNCTIFGP- 79
T D ++L + ++ H +DH A L + IF
Sbjct: 45 TTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSS 104
Query: 80 ------LEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTI-GHICYHFMNDHFLCVG 132
+ G+T G + T + F ++ L
Sbjct: 105 LGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVLISN 164
Query: 133 DTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYF 169
D +E F + + Y+
Sbjct: 165 DIFGQNIAA-------SERFSDQIPVHTLERAMREYY 194
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching, alternative binding site, product
complex; HET: C6L GOL; 0.95A {Bacillus thuringiensis
serovarkurstaki} PDB: 3dhb_A* 3dhc_A* 2a7m_A* 2br6_A
2btn_A
Length = 254
Score = 59.2 bits (142), Expect = 9e-10
Identities = 26/149 (17%), Positives = 52/149 (34%), Gaps = 20/149 (13%)
Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLE---------ESSKIPGIDHGLSDGDTF 99
L +I ++H H DH N E + +P +++ + +GD
Sbjct: 101 LLYIISSHLHFDHAGGNGAFTNTPIIVQRTEYEAALHREEYMKECILPHLNYKIIEGDYE 160
Query: 100 DFGSHPIKIIATPGHTIGHICYHF---MNDHFLCVGDTLFSLGCGR----IFEDSYAEMF 152
+++ TPGH+ GH + L D ++
Sbjct: 161 VVPGV--QLLYTPGHSPGHQSLFIETEQSGSVLLTIDASYTKENFEDEVPFAGFDPELAL 218
Query: 153 ESLEKIKSF--SDKTHIYFGHEYTENNAY 179
S++++K +K I+FGH+ + +
Sbjct: 219 SSIKRLKEVVKKEKPIIFFGHDIEQEKSC 247
>2p97_A Hypothetical protein; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PSI-2; HET: MSE; 1.65A {Anabaena variabilis atcc 29413}
SCOP: d.157.1.12
Length = 201
Score = 59.2 bits (142), Expect = 9e-10
Identities = 21/148 (14%), Positives = 42/148 (28%), Gaps = 10/148 (6%)
Query: 30 IDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGI 89
ID E + I + DH R+ + I GP+ E P
Sbjct: 38 IDPVALSNHDWKHLESLGGVVWIV--LTNSDHVRSAKEIADQTYTKIAGPVAEKENFPIY 95
Query: 90 DHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI------ 143
D +K++ G + + L GD + + G +
Sbjct: 96 CDRW--LSDGDELVPGLKVMELQGSKTPGELALLLEETTLITGDLVRAYRAGGLEILPDE 153
Query: 144 FEDSYAEMFESLEKIKSFSDKTHIYFGH 171
+ ++ S+ ++ + + G
Sbjct: 154 KLMNKQKVVASVRRLAALEKVEAVLVGD 181
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic
resistance, structure, hydrolase, metal binding protein;
1.90A {Pseudomonas aeruginosa}
Length = 246
Score = 58.9 bits (141), Expect = 1e-09
Identities = 27/199 (13%), Positives = 53/199 (26%), Gaps = 40/199 (20%)
Query: 5 NIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKG-WFLTHIFNTHHHIDHTR 63
N+ ++ D +++ ++ + T + + + NTH H+D T
Sbjct: 31 NVLVAKMLDGTVVIV-------SSPFENLGTQTLMDWVAKTMKPKKVVAINTHFHLDGTG 83
Query: 64 ANLNLKKFFNCTIFGP------------------------------LEESSKIPGIDHGL 93
N KK T L L
Sbjct: 84 GNEIYKKMGAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVFDL 143
Query: 94 SDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFL-CVGDTLFSLGCGRIFEDSYAEMF 152
G F F + +++ + L G + G + + +
Sbjct: 144 KQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKELGYLGDANVKAWP 203
Query: 153 ESLEKIKSFSDKTHIYFGH 171
+S ++K F D + GH
Sbjct: 204 DSARRLKKF-DAKIVIPGH 221
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 58.7 bits (141), Expect = 1e-09
Identities = 26/210 (12%), Positives = 56/210 (26%), Gaps = 35/210 (16%)
Query: 16 CILIHNHKYRLTAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNLKK 70
LI + K TA +D +++ + L ++ H DH A + +
Sbjct: 38 AYLIVDDK---TALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIME 94
Query: 71 FF-NCTIFGPLEESSKIPGI-------DHGLSDGDTFDFGSHPIKIIATP-GHTIGHICY 121
+ + + + G + G + I P H +
Sbjct: 95 LCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFT 154
Query: 122 HFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFA 181
+ + L D + D + ++ E Y+A
Sbjct: 155 YVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMD------------------EAAKYYA 196
Query: 182 LSCDPHNLELQKYCSKVKSMRSQNLYTNPS 211
P + + K +++ + PS
Sbjct: 197 NILMPFSNLITKKLDEIQKINLAIKTIAPS 226
>1x8h_A Beta-lactamase; hydrolase; 1.60A {Aeromonas hydrophila} SCOP:
d.157.1.1 PDB: 3fai_A 1x8i_A 2qds_A* 2gkl_A* 1x8g_A*
3f9o_A
Length = 228
Score = 56.5 bits (135), Expect = 6e-09
Identities = 28/169 (16%), Positives = 51/169 (30%), Gaps = 28/169 (16%)
Query: 30 IDAPDTYIISKMLREK-----GWFLTHIFNTHHHIDHTRANLNLKKFFNCTI-------- 76
+ A T ++ L + + + NT++H D N K +
Sbjct: 37 VGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDL 96
Query: 77 -------------FGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHF 123
G E + + + DGD A P HT I +F
Sbjct: 97 MKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYF 156
Query: 124 MNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKS-FSDKTHIYFGH 171
++ L G + G + ++LE++K+ + GH
Sbjct: 157 PDEQVLYGGC-ILKEKLGNLSFADVKAYPQTLERLKAMKLPIKTVIGGH 204
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidoreductase; HET: FMN; 1.70A
{Methanothermobacterthermautotrophicus} PDB: 2ohi_A*
2ohj_A*
Length = 404
Score = 53.2 bits (127), Expect = 5e-08
Identities = 24/163 (14%), Positives = 45/163 (27%), Gaps = 28/163 (17%)
Query: 49 LTHIFNTHHHIDHTRANLNL-KKFFNCTIFGPLEESSKI--------PGIDHGLSDGDTF 99
+ +I H DH+ + L ++F I+ + + GD
Sbjct: 76 VDYIIQNHVEKDHSGVLVELHRRFPEAPIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVL 135
Query: 100 DFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI 158
D G + + TP H + D L D C D + ++
Sbjct: 136 DLGGKTLTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMD-- 193
Query: 159 KSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSM 201
++A P + + K +VK +
Sbjct: 194 ----------------AARKFYANLITPLSKLVLKKFDEVKEL 220
>1ztc_A Hypothetical protein TM0894; structural genomics, PSI, protein
structure initiative, joint center for structural
genomics, JCSG; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 49.2 bits (116), Expect = 9e-07
Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 29/186 (15%)
Query: 12 HDNFCILIHNHKYRLTAAIDA---PDTYIISKMLREKGW---FLTHIFNTHHHIDHTRAN 65
H + + + + R+ ID + + E G +T + TH H+DH +
Sbjct: 33 HFSTVVYLEHKDRRI--IIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNS 90
Query: 66 L-------------NLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATP 112
+ K + + S I + + +K+ TP
Sbjct: 91 VLFENATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTP 150
Query: 113 GHTIGHICYHFMND---HFLCVGDTLFSLGCGRIF--EDSYAEMFESLEKIKSFSDKTHI 167
H H+ + + L GD + ++ L+++ +
Sbjct: 151 WHAREHLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVG---RIDLL 207
Query: 168 YFGHEY 173
F H+
Sbjct: 208 VFPHDA 213
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus HB8}
Length = 317
Score = 48.9 bits (115), Expect = 1e-06
Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 6/120 (5%)
Query: 77 FGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLF 136
E P L DG+ + ++++ TPGH GH ++ + L GD L
Sbjct: 134 VEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDALL 193
Query: 137 SLGCGRIF------EDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLE 190
+ E+ + SL+++ + + A H+
Sbjct: 194 EKVSPNVGLWAYTRENPLKDFLRSLDRLADLGARVAYAGHFGPIADVRQRAEELKAHHQA 253
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG, NSR435A, DFA5; 1.80A {Nostoc SP}
Length = 262
Score = 46.7 bits (110), Expect = 5e-06
Identities = 29/180 (16%), Positives = 50/180 (27%), Gaps = 36/180 (20%)
Query: 27 TAAIDAPDTYIISKMLREKGWF-----LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLE 81
TA ID P + L L ++ H + L + F
Sbjct: 53 TAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLELAPQITFVCSL 112
Query: 82 ESSK--------IPGIDHGLSDGDTFDFGS-HPIKIIATP-GHTIGHICYHFMNDHFLCV 131
++ + +T D G H +K + P +C + + L
Sbjct: 113 PAAGDLRAAFPDDNLNILPMRGKETLDLGKGHVLKFLPIPSPRWPAGLCTYDVQTQILYT 172
Query: 132 GDTLFSLGCG-RIFEDSYAEMFE-------------------SLEKIKSFSDKTHIYFGH 171
+ CG +F+D++ E +LEKI + GH
Sbjct: 173 DKIFGAHICGDDVFDDNWESFKEDQRYYFNCLMAPHAIHVEAALEKISDLQVRL-YAVGH 231
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center, quorum quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 45.4 bits (106), Expect = 1e-05
Identities = 19/172 (11%), Positives = 39/172 (22%), Gaps = 40/172 (23%)
Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLE----------------------ESSKI 86
++ + +H H DH K +
Sbjct: 104 ISTVVLSHLHNDHAGCVEYFGKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLATP 163
Query: 87 PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND---HFLCVGDTLFSLGCGRI 143
D D + + GH G + + FL V D ++
Sbjct: 164 RNWDLVGRDERERELAPGVNLLNFGTGHASGMLGLAVRLEKQPGFLLVSDACYTATNYGP 223
Query: 144 ------FEDSYAEMFESLEKIKSF--SDKTHIYFGHEYT-------ENNAYF 180
++ I+ + S + FGH+ + ++
Sbjct: 224 PARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGHDREQFASLIKSTDGFY 275
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 41.4 bits (96), Expect = 2e-04
Identities = 28/182 (15%), Positives = 53/182 (29%), Gaps = 43/182 (23%)
Query: 33 PDTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKK--FFNCTIFGPLEE----- 82
P ++ L+ G+ + I+ TH H DH + ++ F N + +E
Sbjct: 121 PTLGRLAANLKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFPNAVVRADQKEADFWL 180
Query: 83 -----------------SSKIPGIDHGLSDGDTFDFGSHP-----IKIIATPGHTIGHIC 120
+ ++ + G F + IK +A+ GHT GH
Sbjct: 181 SQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFSGNTDLVPGIKALASHGHTPGHTT 240
Query: 121 YHF--MNDHFLCVGDTLFS--LGCGR-----IFEDSYAEMFESLEKI--KSFSDKTHIYF 169
Y +GD + + + + +K + I
Sbjct: 241 YVVESQGQKLALLGDLILVAAVQFDDPSVTTQLDSDSKSVAVERKKAFADAAKGGYLIAA 300
Query: 170 GH 171
H
Sbjct: 301 SH 302
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 34.9 bits (80), Expect = 0.018
Identities = 34/213 (15%), Positives = 62/213 (29%), Gaps = 80/213 (37%)
Query: 55 THHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGH 114
T ++ L++ FN + P E + +D + + P
Sbjct: 24 TASFFIASQ----LQEQFNKILPEPTEGFA---------ADDEP----TTPA-------- 58
Query: 115 TIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKI-KSFSDKTHIYFGHEY 173
+ F+ + V + + + L F + Y
Sbjct: 59 ---ELVGKFLG--Y--VSS--------LVEPSKVGQFDQVLNLCLTEFEN--------CY 95
Query: 174 TENNAYFALSCDPHNL------ELQKYCSKVKS-MRSQNLYTNPSTISLEKKVNPFLRIE 226
E N D H L E K K +++ Y + K+ PF +
Sbjct: 96 LEGN-------DIHALAAKLLQENDTTLVKTKELIKN---YIT--ARIMAKR--PFDKKS 141
Query: 227 NTSLRKNLNMENASNLAVF----------TELR 249
N++L + + NA +A+F ELR
Sbjct: 142 NSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.00A {Enterococcus faecalis V583} SCOP:
d.157.1.10
Length = 429
Score = 33.4 bits (75), Expect = 0.055
Identities = 23/147 (15%), Positives = 38/147 (25%), Gaps = 18/147 (12%)
Query: 3 SLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDH- 61
+ L D+ LI+N + P +K + T +F +H H+DH
Sbjct: 39 EFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGAEDKDYQHTAVFLSHAHLDHS 98
Query: 62 -----------------TRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSH 104
T+ LN + E GL+ D G
Sbjct: 99 RMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEI 158
Query: 105 PIKIIATPGHTIGHICYHFMNDHFLCV 131
++I+ G
Sbjct: 159 SVEIVPVDHDAYGASALLIRTPDHFIT 185
>2zdf_A Metallo-beta-lactamase superfamily protein; metallo beta lactmase
fold, structural genomics, NPPSFA; HET: FLC; 2.50A
{Thermus thermophilus} PDB: 3idz_A* 2dkf_A 2zdd_A*
3ie0_A* 2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 33.0 bits (74), Expect = 0.069
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 28/113 (24%)
Query: 49 LTHIFNTHHHIDHTRANLNL-KKFFNCTIFGP------------------------LEES 83
+ + TH H+DH L ++ + ++ E+
Sbjct: 52 VDAVLLTHAHLDHVGRLPKLFREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDV 111
Query: 84 SKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHF--MNDHFLCVGDT 134
+ G L G+ G+ + GH G + GD
Sbjct: 112 EEALGHLRPLEYGEWLRLGALSLAFGQA-GHLPGSAFVVAQGEGRTLVYSGDL 163
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 31.3 bits (70), Expect = 0.21
Identities = 10/93 (10%), Positives = 23/93 (24%), Gaps = 7/93 (7%)
Query: 86 IPGIDHGLSDGDTFDFGSHPIKIIATPG-HTIGHICYHFMNDHFLCVGDTLF------SL 138
+ +G+ P TPG + + L + + +
Sbjct: 251 LAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENVVGTLHNLYT 310
Query: 139 GCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGH 171
G D+ + + F + + F
Sbjct: 311 LRGAEVRDALGWSKYINQALHRFGRQAEVMFAV 343
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 29.7 bits (66), Expect = 0.61
Identities = 19/128 (14%), Positives = 34/128 (26%), Gaps = 35/128 (27%)
Query: 30 IDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRA--NLNLKKFFNCTIFGP-------- 79
DAP+ + + +TH H+DH L F+ I+
Sbjct: 235 FDAPEFQYVLREGLLDAIIITH-----AHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMV 289
Query: 80 --LEESSKIPGID------------------HGLSDGDTFDFGSHPIKIIATPGHTIGHI 119
++ +I + L G+ D + GH +G
Sbjct: 290 LLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSA 349
Query: 120 CYHFMNDH 127
H +
Sbjct: 350 IVHLHIGN 357
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily
TM0207; structural genomics, JCSG, PSI, protein
structure initiative; 2.00A {Thermotoga maritima} SCOP:
d.157.1.4
Length = 220
Score = 29.8 bits (66), Expect = 0.61
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 5/114 (4%)
Query: 52 IFNTHHHIDHTRANLNLKKFFNCTIFGPL-EESSKIPGIDHGLSDGDTFDFGSHPIKIIA 110
+ +H H DH +L F G KI G++ + G + + +
Sbjct: 53 VTESHQHFDHNAHHLVKGNFRVIDRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFE 112
Query: 111 TPGHTIGHICYHFMNDHFLCVGD----TLFSLGCGRIFEDSYAEMFESLEKIKS 160
G + H+ V + + + G + E E + + +
Sbjct: 113 GEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVGGTYTIGPKEAKEVADLLNA 166
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP:
a.129.1.1 c.8.5.1 d.56.1.1
Length = 545
Score = 29.8 bits (67), Expect = 0.71
Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 105 PIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDK 164
I + PG G + D + G + S G E+ +M +K+ D
Sbjct: 272 KIAAVKAPG--FGDRRKAMLQDIAILTGGQVISEDLGMKLENVTIDMLGRAKKVSINKDN 329
Query: 165 THI 167
T I
Sbjct: 330 TTI 332
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 29.4 bits (65), Expect = 0.87
Identities = 10/81 (12%), Positives = 14/81 (17%), Gaps = 4/81 (4%)
Query: 52 IFNTHHHIDH----TRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIK 107
+ TH H DH A + + GP G G
Sbjct: 113 VLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKERCIVVKPGDVVKV 172
Query: 108 IIATPGHTIGHICYHFMNDHF 128
+
Sbjct: 173 KDIEIHALDAFDRTALITLPA 193
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 29.2 bits (64), Expect = 1.0
Identities = 22/151 (14%), Positives = 40/151 (26%), Gaps = 28/151 (18%)
Query: 49 LTHIFNTHHHIDHTRA---NLNLKKFFNCTIFGPLEE----------------SSKIPGI 89
+ ++ TH H DH F N +E
Sbjct: 101 IDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDY 160
Query: 90 DHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFM--NDHFLCVGDTLFSLGCGR----- 142
+ L + IK+ + GH+ GH D + +GD +
Sbjct: 161 SNKLILFEKHFEPVPGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTTAHKNPLWVT 220
Query: 143 IFEDSYAEMFESLEKI--KSFSDKTHIYFGH 171
++D + E++ + F H
Sbjct: 221 AYDDYPMQSIREKERMIPYFIQQQYWFLFYH 251
>3kl7_A Putative metal-dependent hydrolase; structural genomics, joint
center for structural genomics, JCSG; 2.30A
{Parabacteroides distasonis atcc 8503}
Length = 235
Score = 28.6 bits (63), Expect = 1.3
Identities = 22/106 (20%), Positives = 29/106 (27%), Gaps = 12/106 (11%)
Query: 52 IFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFD----------- 100
I TH H DH + T E S K G L +GDT
Sbjct: 69 ILITHEHGDHLDPKAIQAVEKSDTEIIANENSQKKLGKGKVLKNGDTDTSISYMKIEAVP 128
Query: 101 -FGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFE 145
+ + P + P H F GDT + +
Sbjct: 129 AYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDTEDIPEMKDLKD 174
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline binding
protein; PCE, hydrolase; HET: PC BTB; 1.92A
{Streptococcus pneumoniae} SCOP: b.109.1.1 d.157.1.8
PDB: 1wra_A*
Length = 547
Score = 28.3 bits (62), Expect = 1.9
Identities = 26/152 (17%), Positives = 45/152 (29%), Gaps = 14/152 (9%)
Query: 36 YIISKMLREKGWF-LTHIFNTHHHIDHTRANLNL-KKFFNCTIFGPLEESSKIPGIDHGL 93
+ + L+E L I TH H DH L + ++ S+I +
Sbjct: 64 DRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLW 123
Query: 94 SDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFE 153
+ +D ++ G ++ + GD F G I +Y +
Sbjct: 124 DNLYGYD---KVLQTATETGVSVIQN---------ITQGDAHFQFGDMDIQLYNYENETD 171
Query: 154 SLEKIKSFSDKTHIYFGHEYTENNAYFALSCD 185
S ++K D N L D
Sbjct: 172 SSGELKKIWDDNSNSLISVVKVNGKKIYLGGD 203
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein,
heterochromatin protein 1, transcription; 1.80A {Homo
sapiens} SCOP: a.283.1.1
Length = 133
Score = 27.9 bits (62), Expect = 2.0
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 19/78 (24%)
Query: 172 EYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLR 231
+ + + L LEL+ Y + ++R+Q ++ EKK L L
Sbjct: 4 DLSRDECKRIL----RKLELEAYAGVISALRAQ------GDLTKEKK--DLL----GELS 47
Query: 232 KNLNMENASNLAVFTELR 249
K L++ + A E+R
Sbjct: 48 KVLSISTERHRA---EVR 62
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida KT2440} PDB: 1xto_A
Length = 321
Score = 27.9 bits (61), Expect = 2.6
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIFGP 79
+ I IDHT L+L++ ++
Sbjct: 83 INAIVLLDSQIDHTTGLLSLREGCPHQVWCT 113
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 1.97A {Thermotoga
maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 27.8 bits (60), Expect = 2.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 42 LREKGWFLTHIFNTHHHIDHT 62
L K + ++F TH H+DH
Sbjct: 34 LGSKVYAFKYVFLTHGHVDHI 54
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 27.8 bits (61), Expect = 2.8
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 52 IFNTHHHIDHTRA-NLNLKKFFNCTIFG 78
+ TH H+DH L K + ++
Sbjct: 241 VIVTHAHLDHQGLVPLLFKYGYEGPVYC 268
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal
phosphate; HET: LLP; 2.00A {Symbiobacterium
thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Length = 514
Score = 27.7 bits (61), Expect = 3.1
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 26 LTAAIDAPDTYIISKMLREKGWFL 49
+ A D + Y + + + +GW L
Sbjct: 409 IAVASDELNIYQVMEEMAGRGWRL 432
>1hko_A Cytochrome B5; electron transfer protein, heme, electron
transport; HET: HEM; NMR {Bos taurus} SCOP: d.120.1.1
PDB: 2i96_A*
Length = 104
Score = 27.2 bits (60), Expect = 3.7
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 13 DNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF 72
+ +++H Y LT ++ + + G T F H R K F
Sbjct: 23 KSTWLILHYKVYDLTKFLEEHPG-GEEVLREQAGGDATENFEDVGHSTDARE--LSKTFI 79
Query: 73 NCTIFGPLEESSK 85
G L +
Sbjct: 80 ----IGELHPDDR 88
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl
phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Length = 497
Score = 27.0 bits (59), Expect = 3.7
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 12 HDNFCILIHNHKYRLTA-AIDAPDTYIISKMLREKGWFL 49
+ ++ N +Y + + + + + +S L +KGW
Sbjct: 364 NIPDLDIMGNPRYSVISFSSKTLNIHELSDRLSKKGWHF 402
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal
family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB:
1utu_A
Length = 102
Score = 26.7 bits (59), Expect = 5.2
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 15/63 (23%)
Query: 187 HNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFT 246
LEL+ Y + ++R+Q ++ EKK L L K L++ + A
Sbjct: 23 RKLELEAYAGVISALRAQ------GDLTKEKK--DLL----GELSKVLSISTERHRA--- 67
Query: 247 ELR 249
E+R
Sbjct: 68 EVR 70
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 26.6 bits (57), Expect = 5.8
Identities = 15/127 (11%), Positives = 33/127 (25%), Gaps = 3/127 (2%)
Query: 49 LTHIFNTHHHIDHTRA--NLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPI 106
+ + +H H+DH A K F F + I + +
Sbjct: 64 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMT-HATKAIYRWLLSDYVKVSNISADDML 122
Query: 107 KIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTH 166
++ I ++ G + G + + + + K+ D +
Sbjct: 123 YTETDLEESMDKIETINFHEVKEVAGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSR 182
Query: 167 IYFGHEY 173
H
Sbjct: 183 QEDRHLM 189
>1p1m_A Hypothetical protein TM0936; putative metal dependent hydrolase,
PSI, protein structure initiative; 1.50A {Thermotoga
maritima} SCOP: b.92.1.4 c.1.9.9 PDB: 2plm_A* 1j6p_A
Length = 406
Score = 26.6 bits (57), Expect = 5.8
Identities = 23/157 (14%), Positives = 46/157 (29%), Gaps = 15/157 (9%)
Query: 54 NTHHHIDHTRA-----NLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKI 108
NTH H T +L+ +++ + P+E+ L++ +
Sbjct: 53 NTHTHAPMTLLRGVAEDLSFEEWLFSKVL-PIEDR---------LTEKMAYYGTILAQME 102
Query: 109 IATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIY 168
+A G Y V D R DS + LE+ ++ + +
Sbjct: 103 MARHGIAGFVDMYFHEEWIAKAVRDFGMRALLTRGLVDSNGDDGGRLEENLKLYNEWNGF 162
Query: 169 FGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQN 205
G + + C L+ +K +
Sbjct: 163 EGRIFVGFGPHSPYLCSEEYLKRVFDTAKSLNAPVTI 199
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 25.9 bits (56), Expect = 9.0
Identities = 18/161 (11%), Positives = 31/161 (19%), Gaps = 52/161 (32%)
Query: 10 LYHDNFCILI----HNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRA- 64
+ DN +LI + K I + I + I + I+ A
Sbjct: 20 VRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPE---------IDVIILSQPTIECLGAH 70
Query: 65 -----NLNLKKFFNCTIFGP----------LEESSKIPGID------------------- 90
N ++ +S G+
Sbjct: 71 SLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDH 130
Query: 91 -HGLSDGDTFDFGSHPIKIIATP---GHTIGHICYHFMNDH 127
L D S + G G +
Sbjct: 131 IVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCISTYS 171
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,267,886
Number of extensions: 103088
Number of successful extensions: 456
Number of sequences better than 10.0: 1
Number of HSP's gapped: 408
Number of HSP's successfully gapped: 82
Length of query: 256
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 166
Effective length of database: 3,511,270
Effective search space: 582870820
Effective search space used: 582870820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.7 bits)