RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus
Liberibacter asiaticus str. psy62]
(256 letters)
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 254
Score = 188 bits (479), Expect = 3e-49
Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 1/248 (0%)
Query: 8 ISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLN 67
+ DN+ ++H+ +D + I L+ G LT+I NTHHH DHT NL
Sbjct: 6 VPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLE 65
Query: 68 LKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDH 127
LK + + G + +IPGID L DGD + F H + ++ TPGHT GHI +F
Sbjct: 66 LKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSR 125
Query: 128 FLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPH 187
+ GDT+FSL CG++FE + +M SL+KI S D T IY GHEYT +N+ FALS +P+
Sbjct: 126 AIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFALSLEPN 185
Query: 188 NLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN-LAVFT 246
N LQ Y + V +RS+ L T P+T+ +EK NPFLR NT +R+ L + A++
Sbjct: 186 NEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALG 245
Query: 247 ELRIRKNQ 254
+R K+
Sbjct: 246 IIRKAKDD 253
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Length = 251
Score = 152 bits (385), Expect = 2e-38
Identities = 90/251 (35%), Positives = 126/251 (50%), Gaps = 6/251 (2%)
Query: 6 IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65
+I + DN+ ++ N + R +D + + K + E W IF THHH DH
Sbjct: 4 NSIPAFQDNYIWVLTNDEGR-CVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGV 62
Query: 66 LNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN 125
L + F ++ G H + DGDT + ATPGHT+GH+CY
Sbjct: 63 KELLQHFPQMTVYG-PAETQDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYFS-- 119
Query: 126 DHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCD 185
+L GDTLFS GCGR+FE + ++M++SL KI S D T I HEYT N FALS
Sbjct: 120 RPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTLICCAHEYTLANIKFALSIL 179
Query: 186 PHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMEN--ASNLA 243
PH+ + +Y KVK +R + T P + E+K+N FLR E+ L +N E A
Sbjct: 180 PHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEA 239
Query: 244 VFTELRIRKNQ 254
F LR +K+
Sbjct: 240 RFAWLRSKKDT 250
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 132 bits (333), Expect = 2e-32
Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 10/255 (3%)
Query: 8 ISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLN 67
+ DN+ L+ + + + A +D + R+ G LT + THHH DH N
Sbjct: 6 LPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEK 65
Query: 68 LKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHF---- 123
L K + +I + H ++ T GS +K +ATP HT GHICY
Sbjct: 66 LVKLESGLKVYG--GDDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPG 123
Query: 124 -MNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEK-IKSFSDKTHIYFGHEYTENNAYFA 181
+ GDTLF GCG+ +E + EM ++L + + T +Y GHEYT NN FA
Sbjct: 124 GSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFA 183
Query: 182 LSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN 241
+P N +++ + K S T PST++ E NPF+R+ +++++
Sbjct: 184 RHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVREKTVQQHAGE--TDP 241
Query: 242 LAVFTELRIRKNQSK 256
+ +R K+Q K
Sbjct: 242 VTTMRAVRREKDQFK 256
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 84.3 bits (207), Expect = 9e-18
Identities = 21/185 (11%), Positives = 43/185 (23%), Gaps = 27/185 (14%)
Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI------------------PGID 90
L I +H H DH LK+ + E + + D
Sbjct: 76 LRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGDGITYPPANAD 135
Query: 91 HGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI------- 143
+ DG+ G GHT G + + + ++
Sbjct: 136 RIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGN 195
Query: 144 --FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSM 201
+ + S +++ + + + L + Y +
Sbjct: 196 PRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDYAAGARAGAKALTCKAYADAAEQK 255
Query: 202 RSQNL 206
L
Sbjct: 256 FDGQL 260
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, IMP-1 [TaxId: 287]}
Length = 220
Score = 73.4 bits (179), Expect = 2e-14
Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 5/171 (2%)
Query: 28 AAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES---S 84
A DT + E+G+ + ++H H D T L T L
Sbjct: 47 TPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKK 106
Query: 85 KIPGIDHGLSDGDTFDFGSHPIK-IIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI 143
G + + I+ PGHT ++ L G + G G +
Sbjct: 107 DGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNL 166
Query: 144 FEDSYAEMFESLEKIKS-FSDKTHIYFGHEYTENNAYFALSCDPHNLELQK 193
+ + +S + +KS + + H + + L+ + L +
Sbjct: 167 GDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNE 217
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 72.8 bits (177), Expect = 3e-14
Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 33/192 (17%)
Query: 30 IDA---PDTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES 83
+D T +I + + G+ + I NTH H+DHT +KK + +
Sbjct: 41 MDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDK 100
Query: 84 SKIPG------------------IDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN 125
+ G +D + +GD G + ATPGH+ G +
Sbjct: 101 PLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTV 160
Query: 126 DH--------FLCVGDTLFSLGCGRI-FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTEN 176
F C G + G+ + + + K K+ + E
Sbjct: 161 KDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAMKIDVLLGPHPEVYGM 220
Query: 177 NAYFALSCDPHN 188
A A D
Sbjct: 221 QAKRAEMKDGAP 232
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, VIM-2 [TaxId: 287]}
Length = 230
Score = 71.2 bits (173), Expect = 8e-14
Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 15/177 (8%)
Query: 9 SLYHDNFCILIHNHKYRLTAAIDAPDTY--IISKMLREKGWFLTHIFNTHHHIDHTRANL 66
++Y N I+ + L +++++ ++ G +T +TH H D
Sbjct: 34 AVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVD 93
Query: 67 NLKKFFNCTIFGPLE--------ESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGH 118
L+ T P ++ S GD FG H+ +
Sbjct: 94 VLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPV-ELFYPGAAHSTDN 152
Query: 119 ICYHFMNDHFLCVGDTLFSLGCGRI---FEDSYAEMFESLEKIKS-FSDKTHIYFGH 171
+ + + L G ++ L + AE S+E+I+ + + + GH
Sbjct: 153 LVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGH 209
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 66.1 bits (160), Expect = 3e-12
Identities = 29/193 (15%), Positives = 55/193 (28%), Gaps = 37/193 (19%)
Query: 49 LTHIFNTHHHIDHTRAN-LNLKKFFNCTIFGP---------------------------- 79
+ + TH H DH + N +
Sbjct: 62 VHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQ 121
Query: 80 --LEESSKIPGIDHGLSDGDTFDFGSHP-IKIIATPGHTIGHICYHFMNDHFLCVGDTLF 136
E + ++DG+ + G +++I GH+ H+ ++ + L GD L
Sbjct: 122 RLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALG 181
Query: 137 SLGCGRI-----FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLEL 191
D ESLE+++ + GH A + E
Sbjct: 182 EFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQLIPGHGGLLRGRLAADGAESAYTEC 241
Query: 192 QKYCSKVKSMRSQ 204
+ C ++ +S
Sbjct: 242 LRLCRRLLWRQSM 254
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena
variabilis [TaxId: 1172]}
Length = 200
Score = 65.3 bits (158), Expect = 4e-12
Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 14/166 (8%)
Query: 13 DNFCILIHNHKYRLTAAID-APDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF 71
D + + ID + K L G + I T+ H R+ +
Sbjct: 22 DFNGFAWIRPEGNI--LIDPVALSNHDWKHLESLGG-VVWIVLTNSD--HVRSAKEIADQ 76
Query: 72 FNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCV 131
I GP+ E P D +K++ G + + L
Sbjct: 77 TYTKIAGPVAEKENFPIYCDR--WLSDGDELVPGLKVMELQGSKTPGELALLLEETTLIT 134
Query: 132 GDTLFSLGCGRI------FEDSYAEMFESLEKIKSFSDKTHIYFGH 171
GD + + G + + ++ S+ ++ + + G
Sbjct: 135 GDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVEAVLVGD 180
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 64.2 bits (155), Expect = 9e-12
Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 39/197 (19%)
Query: 30 IDA---PDTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES 83
I++ + +I +++ G+ + +H H DH + +K+ E+
Sbjct: 38 INSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDV 97
Query: 84 SKI--------------------PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHF 123
S I +D L DG+ + G + TPGHT G +
Sbjct: 98 SVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTM 157
Query: 124 MNDHFLCVGDTLFSLGCGRI----------FEDSYAEMFESLEKIKSFSDKTHIYFGH-- 171
+ G + + S++ ++S H
Sbjct: 158 KLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVLESMRCDI-FLGSHAG 216
Query: 172 EYTENNAYFALSCDPHN 188
+ N Y LS +N
Sbjct: 217 MFDLKNKYVLLSKGQNN 233
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
[TaxId: 1396]}
Length = 221
Score = 58.8 bits (141), Expect = 4e-10
Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 14/156 (8%)
Query: 30 IDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKK----FFNCTIFGPL 80
+D+ +I + ++ +T + TH H D LK+ + + L
Sbjct: 49 VDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAEL 108
Query: 81 EESSKIPGIDHGLSDGDTFDFGSHPIKIIAT-PGHTIGHICYHFMNDHFLCVGDTLFSLG 139
+ + L FG+ ++ GHT +I + L G + S
Sbjct: 109 AKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTS 168
Query: 140 ---CGRIFEDSYAEMFESLEKI-KSFSDKTHIYFGH 171
G + + E S+E + K + + + GH
Sbjct: 169 AKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGH 204
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas
hydrophila, CphA [TaxId: 644]}
Length = 228
Score = 56.1 bits (134), Expect = 3e-09
Identities = 26/169 (15%), Positives = 48/169 (28%), Gaps = 28/169 (16%)
Query: 30 IDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES- 83
+ A T + + R + + NT++H D N K +
Sbjct: 37 VGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDL 96
Query: 84 --------------------SKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHF 123
+ + + DGD A P HT I +F
Sbjct: 97 MKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYF 156
Query: 124 MNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKS-FSDKTHIYFGH 171
++ L G + G + ++LE++K+ + GH
Sbjct: 157 PDEQVLYGGC-ILKEKLGNLSFADVKAYPQTLERLKAMKLPIKTVIGGH 204
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 55.4 bits (132), Expect = 4e-09
Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 17/176 (9%)
Query: 10 LYHDNFCILIHNHKYRLTAAIDAPDT-----YIISKMLREKGWFLTHIFNTHHHIDHTRA 64
+ N I+I+NH+ A +D P +++ + +T H H D
Sbjct: 32 MVPSNGMIVINNHQ---AALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGG 88
Query: 65 NLNLKKFFNCTIFGPLE----ESSKIPGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHI 119
L+K + + + +P +HG +D T P++ GH +I
Sbjct: 89 LGYLQKKGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNI 148
Query: 120 CYHFMNDHFLCVGDTLFSLGCGR---IFEDSYAEMFESLEKIKS-FSDKTHIYFGH 171
++ L G L I + ++L+K+K+ F ++ GH
Sbjct: 149 VVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGH 204
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 249
Score = 49.6 bits (117), Expect = 3e-07
Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 17/162 (10%)
Query: 16 CILIHNHKYRLTAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNLKK 70
LI + K TA +D +++ + L ++ H DH A + +
Sbjct: 38 AYLIVDDK---TALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIME 94
Query: 71 FFNCTIFGPLEESSK--------IPGIDHGLSDGDTFDFGSHPIKIIATPGHTI-GHICY 121
+ + I + G + G + I P +
Sbjct: 95 LCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFT 154
Query: 122 HFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSD 163
+ + L D + D + +++ +
Sbjct: 155 YVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYA 196
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 49.1 bits (116), Expect = 4e-07
Identities = 21/143 (14%), Positives = 36/143 (25%), Gaps = 13/143 (9%)
Query: 27 TAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLE 81
ID + + +THI H DH+ + K +
Sbjct: 51 NVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIAS 110
Query: 82 ESSK-------IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDT 134
K + DG+ + G K + TP +++ D
Sbjct: 111 NFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYLDGILFS-CDV 169
Query: 135 LFSLGCGRIFEDSYAEMFESLEK 157
I +DS + E
Sbjct: 170 GGGYLLPEILDDSNESVVERYLP 192
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO),
N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Length = 249
Score = 48.4 bits (114), Expect = 7e-07
Identities = 20/173 (11%), Positives = 39/173 (22%), Gaps = 21/173 (12%)
Query: 27 TAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLE 81
T D ++L + ++ H +DH A L +
Sbjct: 44 TTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSS 103
Query: 82 ESSK--------IPGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVG 132
K + G+T G + T H + F ++ L
Sbjct: 104 LGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVLISN 163
Query: 133 DTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCD 185
D E F + + Y+ + + +
Sbjct: 164 DIFGQNIAAS-------ERFSDQIPVHTLERAMREYYANIVNPYAPQTLKAIE 209
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium
meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Length = 219
Score = 47.0 bits (110), Expect = 2e-06
Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 14/163 (8%)
Query: 30 IDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKK----FFNCTIFGPL 80
ID P ++ ++ G + TH H D K ++ + +
Sbjct: 41 IDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSI 100
Query: 81 EESSKIPGIDHGLSDGDTFDFGSHPIKII-ATPGHTIGHICYHFMNDHFLCVGDTLFSLG 139
P + + +F G ++ GHT ++ F + L G + S
Sbjct: 101 LAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSAD 160
Query: 140 CGRI---FEDSYAEMFESLEKIKS-FSDKTHIYFGHEYTENNA 178
+ E + +S+ I+ FS ++ GH+ ++
Sbjct: 161 SKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWKDQR 203
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 37.4 bits (85), Expect = 0.001
Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 24/181 (13%)
Query: 14 NFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKK 70
L H + + + + + E G +T + TH H+DH ++ +
Sbjct: 24 TVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFEN 83
Query: 71 FFNCTIFGPLEE-------------SSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIG 117
+ S I + + +K+ TP H
Sbjct: 84 ATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTPWHARE 143
Query: 118 HICYHFMND---HFLCVGDTLFSLGCGRIF--EDSYAEMFESLEKIKSFSDKTHIYFGHE 172
H+ + + L GD + ++ L+++ + F H+
Sbjct: 144 HLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVG---RIDLLVFPHD 200
Query: 173 Y 173
Sbjct: 201 A 201
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 34.2 bits (77), Expect = 0.010
Identities = 22/132 (16%), Positives = 33/132 (25%), Gaps = 21/132 (15%)
Query: 25 RLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDH------------------TRANL 66
L D P +K + T +F +H H+DH T+ L
Sbjct: 7 ELKDLYD-PRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMIL 65
Query: 67 NLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND 126
N + E GL+ D G ++I+ G
Sbjct: 66 NSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTP 125
Query: 127 HFLCV--GDTLF 136
GD
Sbjct: 126 DHFITYTGDLRL 137
>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 125
Score = 33.3 bits (75), Expect = 0.022
Identities = 12/93 (12%), Positives = 22/93 (23%), Gaps = 6/93 (6%)
Query: 84 SKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSL-GCGR 142
S+IPG G++ F P + + I ++ +
Sbjct: 1 SQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS 60
Query: 143 IFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTE 175
E LE + + E
Sbjct: 61 FDSMISTNCTEELEN-----AGVEVLKFSQVKE 88
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 32.0 bits (72), Expect = 0.050
Identities = 15/141 (10%), Positives = 27/141 (19%), Gaps = 53/141 (37%)
Query: 49 LTHIFNTHHHIDHTRANLNLK-------------------------------------KF 71
+ + +H H DH L +
Sbjct: 143 IRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATY 202
Query: 72 FNCTIFGPLEESSKIPGIDHGLSDG---------------DTFDFGSHPIKIIATPG-HT 115
T + I GL+ G + P TPG +
Sbjct: 203 QYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTES 262
Query: 116 IGHICYHFMNDHFLCVGDTLF 136
+ L + + +
Sbjct: 263 PAEMNIWLPRQKALLMAENVV 283
>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma
cruzi [TaxId: 5693]}
Length = 117
Score = 31.3 bits (70), Expect = 0.090
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%)
Query: 86 IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFE 145
IPGI+H +S + F P +++ G I N + G I
Sbjct: 1 IPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR 60
Query: 146 DSYAEMFESLEKIKSFSDKTHIYFGHEYTE 175
+ E L K + ++ I +
Sbjct: 61 GFDHTLREELTKQLT-ANGIQILTKENPAK 89
>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli
[TaxId: 562]}
Length = 116
Score = 31.3 bits (70), Expect = 0.095
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 3/73 (4%)
Query: 86 IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFE 145
IPG+++G+ F + P ++ G+I T
Sbjct: 2 IPGVEYGIDSDGFFALPALPERVAVVGA---GYIGVELGGVINGLGAKTHLFEMFDAPLP 58
Query: 146 DSYAEMFESLEKI 158
+ E+L ++
Sbjct: 59 SFDPMISETLVEV 71
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 30.5 bits (67), Expect = 0.15
Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 15/169 (8%)
Query: 42 LREKGWFLTHIFNTHHHIDHT---------RANLNLKKFFNCTIFGP------LEESSKI 86
L K + ++F TH H+DH R N + +F P E + I
Sbjct: 34 LGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFI 93
Query: 87 PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFED 146
+ L ++ F H + + R
Sbjct: 94 KRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLK 153
Query: 147 SYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYC 195
+ +S E + +K + EY + + + E +
Sbjct: 154 KEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLALDPEEIRGT 202
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 30.3 bits (67), Expect = 0.16
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 49 LTHIFNTHHHIDHTRANLNL-KKFFNCTIFGP 79
+ + TH H+DH L ++ + ++
Sbjct: 52 VDAVLLTHAHLDHVGRLPKLFREGYRGPVYAT 83
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 28.6 bits (63), Expect = 0.49
Identities = 18/157 (11%), Positives = 32/157 (20%), Gaps = 52/157 (33%)
Query: 10 LYHDNFCILI----HNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRA- 64
+ DN +LI + K I +I + + I + I+ A
Sbjct: 20 VRFDNVTLLIDPGWNPSKVSYEQCIK-YWEKVIPE--------IDVIILSQPTIECLGAH 70
Query: 65 -----NLNLKKFFNCTIFGP----------LEESSKIPGID------------------- 90
N ++ +S G+
Sbjct: 71 SLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDH 130
Query: 91 -HGLSDGDTFDFGSHPIKIIATP---GHTIGHICYHF 123
L D S + G G +
Sbjct: 131 IVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCI 167
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 28.3 bits (63), Expect = 0.69
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 156 EKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISL 215
+K ++++T F T C + VK + + YTN +S+
Sbjct: 400 AHLKQWTERTGFAFSLYSTPAEN----LCYRFCKLDTEKYGSVKDVTDKGWYTNSFHVSV 455
Query: 216 EKKVNPFLRIE 226
E+ + PF +I
Sbjct: 456 EENITPFEKIS 466
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 28.1 bits (61), Expect = 0.89
Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 14/191 (7%)
Query: 36 YIISKMLREKG-WFLTHIFNTHHHIDHTRANLN-LKKFFNCTIFGPLEESSKIPGIDHGL 93
+ + L+E L I TH H DH L + ++ S+I +
Sbjct: 60 DRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLW 119
Query: 94 SDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFE 153
+ +D + GD F G I +Y +
Sbjct: 120 DNLYGYDKVLQTATETGVSVI------------QNITQGDAHFQFGDMDIQLYNYENETD 167
Query: 154 SLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTI 213
S ++K D N L D N+ + + + N
Sbjct: 168 SSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYGPLIGKVDLMKFNHHHD 227
Query: 214 SLEKKVNPFLR 224
+ + F++
Sbjct: 228 TNKSNTKDFIK 238
>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium
falciparum [TaxId: 5833]}
Length = 117
Score = 27.8 bits (61), Expect = 1.1
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 5/90 (5%)
Query: 86 IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFE 145
+ GI++ +S + F+ KI G+I +N D+ RI
Sbjct: 4 VKGIENTISSDEFFNI-KESKKIGIVGS---GYIAVELINVIKRLGIDSYIFARGNRILR 59
Query: 146 DSYAEMFESLEKIKSFSDKTHIYFGHEYTE 175
+ LE + +I + E
Sbjct: 60 KFDESVINVLENDMKK-NNINIVTFADVVE 88
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 27.4 bits (59), Expect = 1.4
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 49 LTHIFNTHHHIDHTRA--NLNLKKFFNCTIFGP 79
+ + +H H+DH A K F F
Sbjct: 56 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMT 88
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId:
9606]}
Length = 90
Score = 26.3 bits (58), Expect = 2.5
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 15/63 (23%)
Query: 187 HNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFT 246
LEL+ Y + ++R+Q ++ EKK L L K L++ + A
Sbjct: 11 RKLELEAYAGVISALRAQ------GDLTKEKKD--LL----GELSKVLSISTERHRA--- 55
Query: 247 ELR 249
E+R
Sbjct: 56 EVR 58
>d1e6yb1 a.89.1.1 (B:2186-2433) Beta chain {Archaeon Methanosarcina
barkeri [TaxId: 2208]}
Length = 248
Score = 25.5 bits (56), Expect = 4.0
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 80 LEESSKIPGIDHGLSDGDT--FDFGSHPI 106
LE+ + +PG D+G +G F F SH I
Sbjct: 151 LEKETGLPGCDYGKVEGTAVGFSFFSHSI 179
>d1hbnb1 a.89.1.1 (B:189-443) Beta chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 255
Score = 25.6 bits (56), Expect = 4.4
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 80 LEESSKIPGIDHGLSDGDT--FDFGSHPI 106
+E + +P +D G +G F F SH I
Sbjct: 150 IEFETGLPSVDFGKVEGTAVGFSFFSHSI 178
>d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus
vulgaris [TaxId: 585]}
Length = 156
Score = 25.7 bits (56), Expect = 4.5
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 49 LTHIFNTHHHIDHT 62
LT F+THHH++
Sbjct: 75 LTKGFSTHHHMNPV 88
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 25.3 bits (54), Expect = 4.6
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNC 74
+ I+ TH H DH + ++
Sbjct: 105 VDEIYITHMHPDHVGGLMVGEQLAFP 130
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
{Pseudomonas putida [TaxId: 303]}
Length = 304
Score = 25.5 bits (54), Expect = 4.8
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 43 REKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGP 79
+ + I IDHT L+L++ ++
Sbjct: 75 ALRDTGINAIVLLDSQIDHTTGLLSLREGCPHQVWCT 111
>d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga
maritima [TaxId: 2336]}
Length = 209
Score = 24.8 bits (53), Expect = 8.0
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 5/114 (4%)
Query: 52 IFNTHHHIDHTRANLNLKKFFNCTIFGPL-EESSKIPGIDHGLSDGDTFDFGSHPIKIIA 110
+ +H H DH +L F G KI G++ + G + + +
Sbjct: 42 VTESHQHFDHNAHHLVKGNFRVIDRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFE 101
Query: 111 TPGHTIGHICYHFMNDHFLCVGD----TLFSLGCGRIFEDSYAEMFESLEKIKS 160
G + H+ V + + + G + E E + + +
Sbjct: 102 GEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVGGTYTIGPKEAKEVADLLNA 155
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.422
Gapped
Lambda K H
0.267 0.0584 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 989,567
Number of extensions: 45844
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 174
Number of HSP's successfully gapped: 49
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.1 bits)