RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62] (256 letters) >d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 254 Score = 188 bits (479), Expect = 3e-49 Identities = 99/248 (39%), Positives = 141/248 (56%), Gaps = 1/248 (0%) Query: 8 ISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLN 67 + DN+ ++H+ +D + I L+ G LT+I NTHHH DHT NL Sbjct: 6 VPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLE 65 Query: 68 LKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDH 127 LK + + G + +IPGID L DGD + F H + ++ TPGHT GHI +F Sbjct: 66 LKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSR 125 Query: 128 FLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPH 187 + GDT+FSL CG++FE + +M SL+KI S D T IY GHEYT +N+ FALS +P+ Sbjct: 126 AIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFALSLEPN 185 Query: 188 NLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN-LAVFT 246 N LQ Y + V +RS+ L T P+T+ +EK NPFLR NT +R+ L + A++ Sbjct: 186 NEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALG 245 Query: 247 ELRIRKNQ 254 +R K+ Sbjct: 246 IIRKAKDD 253 >d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione hydrolase) {Salmonella typhimurium [TaxId: 90371]} Length = 251 Score = 152 bits (385), Expect = 2e-38 Identities = 90/251 (35%), Positives = 126/251 (50%), Gaps = 6/251 (2%) Query: 6 IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65 +I + DN+ ++ N + R +D + + K + E W IF THHH DH Sbjct: 4 NSIPAFQDNYIWVLTNDEGR-CVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHVGGV 62 Query: 66 LNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN 125 L + F ++ G H + DGDT + ATPGHT+GH+CY Sbjct: 63 KELLQHFPQMTVYG-PAETQDKGATHLVGDGDTIRVLGEKFTLFATPGHTLGHVCYFS-- 119 Query: 126 DHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCD 185 +L GDTLFS GCGR+FE + ++M++SL KI S D T I HEYT N FALS Sbjct: 120 RPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTLICCAHEYTLANIKFALSIL 179 Query: 186 PHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMEN--ASNLA 243 PH+ + +Y KVK +R + T P + E+K+N FLR E+ L +N E A Sbjct: 180 PHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLRTEDIDLINEINKETILQQPEA 239 Query: 244 VFTELRIRKNQ 254 F LR +K+ Sbjct: 240 RFAWLRSKKDT 250 >d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione hydrolase) {Human (Homo sapiens) [TaxId: 9606]} Length = 260 Score = 132 bits (333), Expect = 2e-32 Identities = 74/255 (29%), Positives = 117/255 (45%), Gaps = 10/255 (3%) Query: 8 ISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLN 67 + DN+ L+ + + + A +D + R+ G LT + THHH DH N Sbjct: 6 LPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGGNEK 65 Query: 68 LKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHF---- 123 L K + +I + H ++ T GS +K +ATP HT GHICY Sbjct: 66 LVKLESGLKVYG--GDDRIGALTHKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPG 123 Query: 124 -MNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEK-IKSFSDKTHIYFGHEYTENNAYFA 181 + GDTLF GCG+ +E + EM ++L + + T +Y GHEYT NN FA Sbjct: 124 GSEPPAVFTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFA 183 Query: 182 LSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASN 241 +P N +++ + K S T PST++ E NPF+R+ +++++ Sbjct: 184 RHVEPGNAAIREKLAWAKEKYSIGEPTVPSTLAEEFTYNPFMRVREKTVQQHAGE--TDP 241 Query: 242 LAVFTELRIRKNQSK 256 + +R K+Q K Sbjct: 242 VTTMRAVRREKDQFK 256 >d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas maltophilia [TaxId: 40324]} Length = 266 Score = 84.3 bits (207), Expect = 9e-18 Identities = 21/185 (11%), Positives = 43/185 (23%), Gaps = 27/185 (14%) Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEESSKI------------------PGID 90 L I +H H DH LK+ + E + + D Sbjct: 76 LRLILLSHAHADHAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGDGITYPPANAD 135 Query: 91 HGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI------- 143 + DG+ G GHT G + + + ++ Sbjct: 136 RIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGN 195 Query: 144 --FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSM 201 + + S +++ + + + L + Y + Sbjct: 196 PRYPHLIEDYRRSFATVRALPCDVLLTPHPGASNWDYAAGARAGAKALTCKAYADAAEQK 255 Query: 202 RSQNL 206 L Sbjct: 256 FDGQL 260 >d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, IMP-1 [TaxId: 287]} Length = 220 Score = 73.4 bits (179), Expect = 2e-14 Identities = 28/171 (16%), Positives = 53/171 (30%), Gaps = 5/171 (2%) Query: 28 AAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES---S 84 A DT + E+G+ + ++H H D T L T L Sbjct: 47 TPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYASELTNELLKK 106 Query: 85 KIPGIDHGLSDGDTFDFGSHPIK-IIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRI 143 G + + I+ PGHT ++ L G + G G + Sbjct: 107 DGKVQATNSFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNL 166 Query: 144 FEDSYAEMFESLEKIKS-FSDKTHIYFGHEYTENNAYFALSCDPHNLELQK 193 + + +S + +KS + + H + + L+ + L + Sbjct: 167 GDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVKGLNE 217 >d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase {Bradyrhizobium japonicum [TaxId: 375]} Length = 264 Score = 72.8 bits (177), Expect = 3e-14 Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 33/192 (17%) Query: 30 IDA---PDTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES 83 +D T +I + + G+ + I NTH H+DHT +KK + + Sbjct: 41 MDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKKETGAQLVAGERDK 100 Query: 84 SKIPG------------------IDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMN 125 + G +D + +GD G + ATPGH+ G + Sbjct: 101 PLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAHATPGHSPGCTSWEMTV 160 Query: 126 DH--------FLCVGDTLFSLGCGRI-FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTEN 176 F C G + G+ + + + K K+ + E Sbjct: 161 KDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKAMKIDVLLGPHPEVYGM 220 Query: 177 NAYFALSCDPHN 188 A A D Sbjct: 221 QAKRAEMKDGAP 232 >d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas aeruginosa, VIM-2 [TaxId: 287]} Length = 230 Score = 71.2 bits (173), Expect = 8e-14 Identities = 29/177 (16%), Positives = 59/177 (33%), Gaps = 15/177 (8%) Query: 9 SLYHDNFCILIHNHKYRLTAAIDAPDTY--IISKMLREKGWFLTHIFNTHHHIDHTRANL 66 ++Y N I+ + L +++++ ++ G +T +TH H D Sbjct: 34 AVYPSNGLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVD 93 Query: 67 NLKKFFNCTIFGPLE--------ESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGH 118 L+ T P ++ S GD FG H+ + Sbjct: 94 VLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDAVRFGPV-ELFYPGAAHSTDN 152 Query: 119 ICYHFMNDHFLCVGDTLFSLGCGRI---FEDSYAEMFESLEKIKS-FSDKTHIYFGH 171 + + + L G ++ L + AE S+E+I+ + + + GH Sbjct: 153 LVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGH 209 >d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE {Pseudomonas aeruginosa [TaxId: 287]} Length = 298 Score = 66.1 bits (160), Expect = 3e-12 Identities = 29/193 (15%), Positives = 55/193 (28%), Gaps = 37/193 (19%) Query: 49 LTHIFNTHHHIDHTRAN-LNLKKFFNCTIFGP---------------------------- 79 + + TH H DH + N + Sbjct: 62 VHYWLITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQ 121 Query: 80 --LEESSKIPGIDHGLSDGDTFDFGSHP-IKIIATPGHTIGHICYHFMNDHFLCVGDTLF 136 E + ++DG+ + G +++I GH+ H+ ++ + L GD L Sbjct: 122 RLPEACAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALG 181 Query: 137 SLGCGRI-----FEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLEL 191 D ESLE+++ + GH A + E Sbjct: 182 EFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQLIPGHGGLLRGRLAADGAESAYTEC 241 Query: 192 QKYCSKVKSMRSQ 204 + C ++ +S Sbjct: 242 LRLCRRLLWRQSM 254 >d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena variabilis [TaxId: 1172]} Length = 200 Score = 65.3 bits (158), Expect = 4e-12 Identities = 24/166 (14%), Positives = 48/166 (28%), Gaps = 14/166 (8%) Query: 13 DNFCILIHNHKYRLTAAID-APDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKF 71 D + + ID + K L G + I T+ H R+ + Sbjct: 22 DFNGFAWIRPEGNI--LIDPVALSNHDWKHLESLGG-VVWIVLTNSD--HVRSAKEIADQ 76 Query: 72 FNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCV 131 I GP+ E P D +K++ G + + L Sbjct: 77 TYTKIAGPVAEKENFPIYCDR--WLSDGDELVPGLKVMELQGSKTPGELALLLEETTLIT 134 Query: 132 GDTLFSLGCGRI------FEDSYAEMFESLEKIKSFSDKTHIYFGH 171 GD + + G + + ++ S+ ++ + + G Sbjct: 135 GDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVEAVLVGD 180 >d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]} Length = 262 Score = 64.2 bits (155), Expect = 9e-12 Identities = 31/197 (15%), Positives = 59/197 (29%), Gaps = 39/197 (19%) Query: 30 IDA---PDTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES 83 I++ + +I +++ G+ + +H H DH + +K+ E+ Sbjct: 38 INSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELIKQQTKAKYMVMDEDV 97 Query: 84 SKI--------------------PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHF 123 S I +D L DG+ + G + TPGHT G + Sbjct: 98 SVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTM 157 Query: 124 MNDHFLCVGDTLFSLGCGRI----------FEDSYAEMFESLEKIKSFSDKTHIYFGH-- 171 + G + + S++ ++S H Sbjct: 158 KLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVLESMRCDI-FLGSHAG 216 Query: 172 EYTENNAYFALSCDPHN 188 + N Y LS +N Sbjct: 217 MFDLKNKYVLLSKGQNN 233 >d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus [TaxId: 1396]} Length = 221 Score = 58.8 bits (141), Expect = 4e-10 Identities = 27/156 (17%), Positives = 53/156 (33%), Gaps = 14/156 (8%) Query: 30 IDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKK----FFNCTIFGPL 80 +D+ +I + ++ +T + TH H D LK+ + + L Sbjct: 49 VDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKERGIKAHSTALTAEL 108 Query: 81 EESSKIPGIDHGLSDGDTFDFGSHPIKIIAT-PGHTIGHICYHFMNDHFLCVGDTLFSLG 139 + + L FG+ ++ GHT +I + L G + S Sbjct: 109 AKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTS 168 Query: 140 ---CGRIFEDSYAEMFESLEKI-KSFSDKTHIYFGH 171 G + + E S+E + K + + + GH Sbjct: 169 AKDLGNVADAYVNEWSTSIENVLKRYRNINAVVPGH 204 >d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas hydrophila, CphA [TaxId: 644]} Length = 228 Score = 56.1 bits (134), Expect = 3e-09 Identities = 26/169 (15%), Positives = 48/169 (28%), Gaps = 28/169 (16%) Query: 30 IDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLEES- 83 + A T + + R + + NT++H D N K + Sbjct: 37 VGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKSIGAKVVSTRQTRDL 96 Query: 84 --------------------SKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHF 123 + + + DGD A P HT I +F Sbjct: 97 MKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKVRAFYAGPAHTPDGIFVYF 156 Query: 124 MNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKS-FSDKTHIYFGH 171 ++ L G + G + ++LE++K+ + GH Sbjct: 157 PDEQVLYGGC-ILKEKLGNLSFADVKAYPQTLERLKAMKLPIKTVIGGH 204 >d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides fragilis [TaxId: 817]} Length = 230 Score = 55.4 bits (132), Expect = 4e-09 Identities = 33/176 (18%), Positives = 63/176 (35%), Gaps = 17/176 (9%) Query: 10 LYHDNFCILIHNHKYRLTAAIDAPDT-----YIISKMLREKGWFLTHIFNTHHHIDHTRA 64 + N I+I+NH+ A +D P +++ + +T H H D Sbjct: 32 MVPSNGMIVINNHQ---AALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGG 88 Query: 65 NLNLKKFFNCTIFGPLE----ESSKIPGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHI 119 L+K + + + +P +HG +D T P++ GH +I Sbjct: 89 LGYLQKKGVQSYANQMTIDLAKEKGLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNI 148 Query: 120 CYHFMNDHFLCVGDTLFSLGCGR---IFEDSYAEMFESLEKIKS-FSDKTHIYFGH 171 ++ L G L I + ++L+K+K+ F ++ GH Sbjct: 149 VVWLPTENILFGGCMLKDNQATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGH 204 >d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal domain {Moorella thermoacetica [TaxId: 1525]} Length = 249 Score = 49.6 bits (117), Expect = 3e-07 Identities = 19/162 (11%), Positives = 43/162 (26%), Gaps = 17/162 (10%) Query: 16 CILIHNHKYRLTAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNLKK 70 LI + K TA +D +++ + L ++ H DH A + + Sbjct: 38 AYLIVDDK---TALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIME 94 Query: 71 FFNCTIFGPLEESSK--------IPGIDHGLSDGDTFDFGSHPIKIIATPGHTI-GHICY 121 + + I + G + G + I P + Sbjct: 95 LCPDAHVLCTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIEAPMLHWPDSMFT 154 Query: 122 HFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSD 163 + + L D + D + +++ + Sbjct: 155 YVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYA 196 >d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 250 Score = 49.1 bits (116), Expect = 4e-07 Identities = 21/143 (14%), Positives = 36/143 (25%), Gaps = 13/143 (9%) Query: 27 TAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLE 81 ID + + +THI H DH+ + K + Sbjct: 51 NVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKTIGHDVEIIAS 110 Query: 82 ESSK-------IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDT 134 K + DG+ + G K + TP +++ D Sbjct: 111 NFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWPDTMVTYLDGILFS-CDV 169 Query: 135 LFSLGCGRIFEDSYAEMFESLEK 157 I +DS + E Sbjct: 170 GGGYLLPEILDDSNESVVERYLP 192 >d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO), N-terminal domain {Desulfovibrio gigas [TaxId: 879]} Length = 249 Score = 48.4 bits (114), Expect = 7e-07 Identities = 20/173 (11%), Positives = 39/173 (22%), Gaps = 21/173 (12%) Query: 27 TAAIDAPDTYIISKMLRE-----KGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGPLE 81 T D ++L + ++ H +DH A L + Sbjct: 44 TTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEACQPEKIFTSS 103 Query: 82 ESSK--------IPGIDHGLSDGDTFDFGSHPIKIIATP-GHTIGHICYHFMNDHFLCVG 132 K + G+T G + T H + F ++ L Sbjct: 104 LGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTFYETRMLHWPDSMVSWFADEKVLISN 163 Query: 133 DTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCD 185 D E F + + Y+ + + + Sbjct: 164 DIFGQNIAAS-------ERFSDQIPVHTLERAMREYYANIVNPYAPQTLKAIE 209 >d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium meningosepticum, carbapenemase BLAB-1 [TaxId: 238]} Length = 219 Score = 47.0 bits (110), Expect = 2e-06 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 14/163 (8%) Query: 30 IDAPDTY-----IISKMLREKGWFLTHIFNTHHHIDHTRANLNLKK----FFNCTIFGPL 80 ID P ++ ++ G + TH H D K ++ + + Sbjct: 41 IDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTYSTKMTDSI 100 Query: 81 EESSKIPGIDHGLSDGDTFDFGSHPIKII-ATPGHTIGHICYHFMNDHFLCVGDTLFSLG 139 P + + +F G ++ GHT ++ F + L G + S Sbjct: 101 LAKENKPRAQYTFDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSAD 160 Query: 140 CGRI---FEDSYAEMFESLEKIKS-FSDKTHIYFGHEYTENNA 178 + E + +S+ I+ FS ++ GH+ ++ Sbjct: 161 SKDLGYIGEAYVNDWTQSVHNIQQKFSGAQYVVAGHDDWKDQR 203 >d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894 {Thermotoga maritima [TaxId: 2336]} Length = 207 Score = 37.4 bits (85), Expect = 0.001 Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 24/181 (13%) Query: 14 NFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWF---LTHIFNTHHHIDHTRANLNLKK 70 L H + + + + + E G +T + TH H+DH ++ + Sbjct: 24 TVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDHIFNSVLFEN 83 Query: 71 FFNCTIFGPLEE-------------SSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIG 117 + S I + + +K+ TP H Sbjct: 84 ATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKVFHTPWHARE 143 Query: 118 HICYHFMND---HFLCVGDTLFSLGCGRIF--EDSYAEMFESLEKIKSFSDKTHIYFGHE 172 H+ + + L GD + ++ L+++ + F H+ Sbjct: 144 HLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRVG---RIDLLVFPHD 200 Query: 173 Y 173 Sbjct: 201 A 201 >d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904 {Enterococcus faecalis [TaxId: 1351]} Length = 183 Score = 34.2 bits (77), Expect = 0.010 Identities = 22/132 (16%), Positives = 33/132 (25%), Gaps = 21/132 (15%) Query: 25 RLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDH------------------TRANL 66 L D P +K + T +F +H H+DH T+ L Sbjct: 7 ELKDLYD-PRLGYEYHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMIL 65 Query: 67 NLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMND 126 N + E GL+ D G ++I+ G Sbjct: 66 NSLNRKGDFLIPSPFEEKNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTP 125 Query: 127 HFLCV--GDTLF 136 GD Sbjct: 126 DHFITYTGDLRL 137 >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Score = 33.3 bits (75), Expect = 0.022 Identities = 12/93 (12%), Positives = 22/93 (23%), Gaps = 6/93 (6%) Query: 84 SKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSL-GCGR 142 S+IPG G++ F P + + I ++ + Sbjct: 1 SQIPGASLGITSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS 60 Query: 143 IFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTE 175 E LE + + E Sbjct: 61 FDSMISTNCTEELEN-----AGVEVLKFSQVKE 88 >d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]} Length = 505 Score = 32.0 bits (72), Expect = 0.050 Identities = 15/141 (10%), Positives = 27/141 (19%), Gaps = 53/141 (37%) Query: 49 LTHIFNTHHHIDHTRANLNLK-------------------------------------KF 71 + + +H H DH L + Sbjct: 143 IRTVIYSHAHADHFGGVRGLVEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATY 202 Query: 72 FNCTIFGPLEESSKIPGIDHGLSDG---------------DTFDFGSHPIKIIATPG-HT 115 T + I GL+ G + P TPG + Sbjct: 203 QYGTQLPKGPQGQVDMAIGKGLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTES 262 Query: 116 IGHICYHFMNDHFLCVGDTLF 136 + L + + + Sbjct: 263 PAEMNIWLPRQKALLMAENVV 283 >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 Score = 31.3 bits (70), Expect = 0.090 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 1/90 (1%) Query: 86 IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFE 145 IPGI+H +S + F P +++ G I N + G I Sbjct: 1 IPGIEHCISSNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR 60 Query: 146 DSYAEMFESLEKIKSFSDKTHIYFGHEYTE 175 + E L K + ++ I + Sbjct: 61 GFDHTLREELTKQLT-ANGIQILTKENPAK 89 >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 Score = 31.3 bits (70), Expect = 0.095 Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 3/73 (4%) Query: 86 IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFE 145 IPG+++G+ F + P ++ G+I T Sbjct: 2 IPGVEYGIDSDGFFALPALPERVAVVGA---GYIGVELGGVINGLGAKTHLFEMFDAPLP 58 Query: 146 DSYAEMFESLEKI 158 + E+L ++ Sbjct: 59 SFDPMISETLVEV 71 >d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga maritima [TaxId: 2336]} Length = 280 Score = 30.5 bits (67), Expect = 0.15 Identities = 24/169 (14%), Positives = 45/169 (26%), Gaps = 15/169 (8%) Query: 42 LREKGWFLTHIFNTHHHIDHT---------RANLNLKKFFNCTIFGP------LEESSKI 86 L K + ++F TH H+DH R N + +F P E + I Sbjct: 34 LGSKVYAFKYVFLTHGHVDHIAGLWGVVNIRNNGMGDREKPLDVFYPEGNRAVEEYTEFI 93 Query: 87 PGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFED 146 + L ++ F H + + R Sbjct: 94 KRANPDLRFSFNVHPLKEGERVFLRNAGGFKRYVQPFRTKHVSSEVSFGYHIFEVRRKLK 153 Query: 147 SYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYC 195 + +S E + +K + EY + + + E + Sbjct: 154 KEFQGLDSKEISRLVKEKGRDFVTEEYHKKVLTISGDSLALDPEEIRGT 202 >d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein TTHA0252 {Thermus thermophilus [TaxId: 274]} Length = 431 Score = 30.3 bits (67), Expect = 0.16 Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 1/32 (3%) Query: 49 LTHIFNTHHHIDHTRANLNL-KKFFNCTIFGP 79 + + TH H+DH L ++ + ++ Sbjct: 52 VDAVLLTHAHLDHVGRLPKLFREGYRGPVYAT 83 >d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein 2, CFT2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 514 Score = 28.6 bits (63), Expect = 0.49 Identities = 18/157 (11%), Positives = 32/157 (20%), Gaps = 52/157 (33%) Query: 10 LYHDNFCILI----HNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRA- 64 + DN +LI + K I +I + + I + I+ A Sbjct: 20 VRFDNVTLLIDPGWNPSKVSYEQCIK-YWEKVIPE--------IDVIILSQPTIECLGAH 70 Query: 65 -----NLNLKKFFNCTIFGP----------LEESSKIPGID------------------- 90 N ++ +S G+ Sbjct: 71 SLLYYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDH 130 Query: 91 -HGLSDGDTFDFGSHPIKIIATP---GHTIGHICYHF 123 L D S + G G + Sbjct: 131 IVPLKYSQLVDLRSRYDGLTLLAYNAGVCPGGSIWCI 167 >d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase NRDD subunit {Bacteriophage T4 [TaxId: 10665]} Length = 561 Score = 28.3 bits (63), Expect = 0.69 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Query: 156 EKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISL 215 +K ++++T F T C + VK + + YTN +S+ Sbjct: 400 AHLKQWTERTGFAFSLYSTPAEN----LCYRFCKLDTEKYGSVKDVTDKGWYTNSFHVSV 455 Query: 216 EKKVNPFLRIE 226 E+ + PF +I Sbjct: 456 EENITPFEKIS 466 >d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine esterase Pce (LytD), N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 305 Score = 28.1 bits (61), Expect = 0.89 Identities = 28/191 (14%), Positives = 51/191 (26%), Gaps = 14/191 (7%) Query: 36 YIISKMLREKG-WFLTHIFNTHHHIDHTRANLN-LKKFFNCTIFGPLEESSKIPGIDHGL 93 + + L+E L I TH H DH L + ++ S+I + Sbjct: 60 DRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLSTYPVDRVYLKKYSDSRITNSERLW 119 Query: 94 SDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFE 153 + +D + GD F G I +Y + Sbjct: 120 DNLYGYDKVLQTATETGVSVI------------QNITQGDAHFQFGDMDIQLYNYENETD 167 Query: 154 SLEKIKSFSDKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTI 213 S ++K D N L D N+ + + + N Sbjct: 168 SSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYGPLIGKVDLMKFNHHHD 227 Query: 214 SLEKKVNPFLR 224 + + F++ Sbjct: 228 TNKSNTKDFIK 238 >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 Score = 27.8 bits (61), Expect = 1.1 Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 5/90 (5%) Query: 86 IPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGRIFE 145 + GI++ +S + F+ KI G+I +N D+ RI Sbjct: 4 VKGIENTISSDEFFNI-KESKKIGIVGS---GYIAVELINVIKRLGIDSYIFARGNRILR 59 Query: 146 DSYAEMFESLEKIKSFSDKTHIYFGHEYTE 175 + LE + +I + E Sbjct: 60 KFDESVINVLENDMKK-NNINIVTFADVVE 88 >d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation specificity factor subunit 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 451 Score = 27.4 bits (59), Expect = 1.4 Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 2/33 (6%) Query: 49 LTHIFNTHHHIDHTRA--NLNLKKFFNCTIFGP 79 + + +H H+DH A K F F Sbjct: 56 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMT 88 >d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]} Length = 90 Score = 26.3 bits (58), Expect = 2.5 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 15/63 (23%) Query: 187 HNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENASNLAVFT 246 LEL+ Y + ++R+Q ++ EKK L L K L++ + A Sbjct: 11 RKLELEAYAGVISALRAQ------GDLTKEKKD--LL----GELSKVLSISTERHRA--- 55 Query: 247 ELR 249 E+R Sbjct: 56 EVR 58 >d1e6yb1 a.89.1.1 (B:2186-2433) Beta chain {Archaeon Methanosarcina barkeri [TaxId: 2208]} Length = 248 Score = 25.5 bits (56), Expect = 4.0 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Query: 80 LEESSKIPGIDHGLSDGDT--FDFGSHPI 106 LE+ + +PG D+G +G F F SH I Sbjct: 151 LEKETGLPGCDYGKVEGTAVGFSFFSHSI 179 >d1hbnb1 a.89.1.1 (B:189-443) Beta chain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 255 Score = 25.6 bits (56), Expect = 4.4 Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Query: 80 LEESSKIPGIDHGLSDGDT--FDFGSHPI 106 +E + +P +D G +G F F SH I Sbjct: 150 IEFETGLPSVDFGKVEGTAVGFSFFSHSI 178 >d3pvia_ c.52.1.6 (A:) Restriction endonuclease PvuII {Proteus vulgaris [TaxId: 585]} Length = 156 Score = 25.7 bits (56), Expect = 4.5 Identities = 7/14 (50%), Positives = 10/14 (71%) Query: 49 LTHIFNTHHHIDHT 62 LT F+THHH++ Sbjct: 75 LTKGFSTHHHMNPV 88 >d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp. WBC-3 [TaxId: 165468]} Length = 294 Score = 25.3 bits (54), Expect = 4.6 Identities = 6/26 (23%), Positives = 11/26 (42%) Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNC 74 + I+ TH H DH + ++ Sbjct: 105 VDEIYITHMHPDHVGGLMVGEQLAFP 130 >d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB {Pseudomonas putida [TaxId: 303]} Length = 304 Score = 25.5 bits (54), Expect = 4.8 Identities = 7/37 (18%), Positives = 14/37 (37%) Query: 43 REKGWFLTHIFNTHHHIDHTRANLNLKKFFNCTIFGP 79 + + I IDHT L+L++ ++ Sbjct: 75 ALRDTGINAIVLLDSQIDHTTGLLSLREGCPHQVWCT 111 >d1vjna_ d.157.1.4 (A:) Hypothetical protein TM0207 {Thermotoga maritima [TaxId: 2336]} Length = 209 Score = 24.8 bits (53), Expect = 8.0 Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 5/114 (4%) Query: 52 IFNTHHHIDHTRANLNLKKFFNCTIFGPL-EESSKIPGIDHGLSDGDTFDFGSHPIKIIA 110 + +H H DH +L F G KI G++ + G + + + Sbjct: 42 VTESHQHFDHNAHHLVKGNFRVIDRPGAYTVNGVKIKGVETFHDPSHGRERGKNIVFVFE 101 Query: 111 TPGHTIGHICYHFMNDHFLCVGD----TLFSLGCGRIFEDSYAEMFESLEKIKS 160 G + H+ V + + + G + E E + + + Sbjct: 102 GEGIKVCHLGDLGHVLTPAQVEEIGEIDVLLVPVGGTYTIGPKEAKEVADLLNA 155 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.323 0.137 0.422 Gapped Lambda K H 0.267 0.0584 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 989,567 Number of extensions: 45844 Number of successful extensions: 198 Number of sequences better than 10.0: 1 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 49 Length of query: 256 Length of database: 2,407,596 Length adjustment: 83 Effective length of query: 173 Effective length of database: 1,268,006 Effective search space: 219365038 Effective search space used: 219365038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 52 (24.1 bits)