BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus
Liberibacter asiaticus str. psy62]
(256 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780583|ref|YP_003064996.1| glyoxalase II [Candidatus Liberibacter asiaticus str. psy62]
Length = 256
Score = 531 bits (1367), Expect = e-153, Method: Compositional matrix adjust.
Identities = 256/256 (100%), Positives = 256/256 (100%)
Query: 1 MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHID 60
MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHID
Sbjct: 1 MTSLNIAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHID 60
Query: 61 HTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHIC 120
HTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHIC
Sbjct: 61 HTRANLNLKKFFNCTIFGPLEESSKIPGIDHGLSDGDTFDFGSHPIKIIATPGHTIGHIC 120
Query: 121 YHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYF 180
YHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYF
Sbjct: 121 YHFMNDHFLCVGDTLFSLGCGRIFEDSYAEMFESLEKIKSFSDKTHIYFGHEYTENNAYF 180
Query: 181 ALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENAS 240
ALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENAS
Sbjct: 181 ALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTISLEKKVNPFLRIENTSLRKNLNMENAS 240
Query: 241 NLAVFTELRIRKNQSK 256
NLAVFTELRIRKNQSK
Sbjct: 241 NLAVFTELRIRKNQSK 256
>gi|254780758|ref|YP_003065171.1| hypothetical protein CLIBASIA_03225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 216
Score = 73.6 bits (179), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 22/188 (11%)
Query: 6 IAISLYHDNFCILIHNHKYRLTAAIDAPDTYIISKMLREKGWFLTHIFNTHHHIDHTRAN 65
+ ++ + N L D II +++ + + + I+ TH H+DH
Sbjct: 9 VQVTPFKQNCTFLFDEESLEAVVVDPGGDLDIIKDVIQSRNFHVKQIWITHGHVDHVGGA 68
Query: 66 LNLKKFFNCTIFGP----------LEESSKIPGI---------DHGLSDGDTFDFGSHPI 106
LK+ + TI GP ++E +++ I D L DGDT G+H
Sbjct: 69 AQLKEDLSLTIIGPHKDDAAMMGKVDEQARLLSIRMNARNASSDRWLQDGDTLLLGTHIF 128
Query: 107 KIIATPGHTIGHICYHFMNDHFLCVGDTLFSLGCGR--IFEDSYAEMFESL-EKIKSFSD 163
K+ PGH+ GH+ Y ++F +GDTLF GR I Y ++ S+ KI D
Sbjct: 129 KVFHCPGHSPGHVIYVNFENNFAHLGDTLFRSSIGRTDILHGDYQQLINSINNKILPLGD 188
Query: 164 KTHIYFGH 171
+ GH
Sbjct: 189 EISFVCGH 196
>gi|254780214|ref|YP_003064627.1| metal-dependent hydrolase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 271
Score = 26.6 bits (57), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 27 TAAID-APDTYIISKMLREKGWFLTHIFNTHHHIDHTRANLNLKKFF 72
T +D PD Y+ ++LRE+ + + TH H DH L+ +F
Sbjct: 55 TVIVDTGPDFYM--QVLREQVLSIDAVLYTHPHADHIHGIDGLRGYF 99
Score = 23.9 bits (50), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 19/51 (37%)
Query: 163 DKTHIYFGHEYTENNAYFALSCDPHNLELQKYCSKVKSMRSQNLYTNPSTI 213
D YF + + Y A C H E +YC K R+ NP I
Sbjct: 93 DGLRGYFLKQKRPIDVYAAPDCMKHLFESFRYCFKALDDRTYPPIVNPIVI 143
>gi|254780869|ref|YP_003065282.1| beta-lactamase domain-containing protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 559
Score = 25.4 bits (54), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 15/72 (20%)
Query: 49 LTHIFNTHHHIDHTRANLNLKKFFNCTIF------GPLEE-------SSKIPGIDHGLSD 95
L IF TH H DH A +L F + ++ G LE S KIP I
Sbjct: 68 LMAIFITHAHEDHYGALHDLWSFLHVPVYASPFAIGLLEAKRVYERVSKKIPCIS--FQA 125
Query: 96 GDTFDFGSHPIK 107
GD D G+ I+
Sbjct: 126 GDKVDVGAFSIE 137
>gi|255764495|ref|YP_003065022.2| putative phosphoesterase protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 309
Score = 25.0 bits (53), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 182 LSCDPHNLELQKYCSKVKSMRSQNLY-TNPSTISLEKKVNPFLRIEN 227
+S P N + +K KS+ + Y T+ +T S KK+ P+LRI N
Sbjct: 99 ISIVPGNHDAYISGAKEKSLHAWKDYITSDTTCSTGKKLFPYLRIRN 145
>gi|254781176|ref|YP_003065589.1| cell division protein FtsZ [Candidatus Liberibacter asiaticus str.
psy62]
Length = 502
Score = 22.3 bits (46), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 138 LGCGRIFEDSYAEMFESLEKIKSFSDKTHIYF 169
LG G E A E +++I DKTH+ F
Sbjct: 72 LGAGSHPEVGRAAAEECIDEITEMLDKTHMCF 103
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.323 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 176,502
Number of Sequences: 1233
Number of extensions: 7414
Number of successful extensions: 24
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 11
length of query: 256
length of database: 328,796
effective HSP length: 72
effective length of query: 184
effective length of database: 240,020
effective search space: 44163680
effective search space used: 44163680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 37 (18.9 bits)