HHsearch alignment of GI: 254780584 and MMDB domain: 3bbo_Y_

>3bbo_Y (Y:) Ribosomal protein L28; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Nicotiana tabacum}

Probab=99.91  E-value=7.1e-27  Score=181.20  Aligned_cols=76  Identities=29%  Similarity=0.404  Sum_probs=73.4

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHCCCCCEECCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCHHHHHHHCCHHHH
Q ss_conf             98541011785536772233230237425552489999855778689999972453023641887799972984455
Q gi|254780584|r    1 MSRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVERQGGLDRFLSNSKKENL   77 (97)
Q Consensus         1 Msr~C~itGk~~~~Gn~vshs~~kTkR~~~PNlq~~~~~s~~l~~~v~l~vst~~lrtI~K~GGlD~yLl~~~~~~L   77 (97)
                      ||++|++||+++++||+||||+++|+|.|+||||++++|||+||++|+++||++|||+|||.| ||+||+++++..+
T Consensus        74 ~s~~~~~~Gk~~~~G~~vs~s~~kt~R~w~PNl~~~~l~se~l~~~v~v~vt~r~LrtI~k~G-ld~yllk~~~~~~  149 (151)
T 3bbo_Y           74 ARRICPFTGKKSNRANKVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNG-LDAVAKKAGIDLS  149 (151)
T ss_dssp             --CCCCCSCCTTCCCCCCEECCSSSCCEECCCCCCCCBCCCTTSSCCCBCCCSSSTTTTTTST-TTCSCCSSSSCSS
T ss_pred             HCEEEECCCCCCCCCCEEECCCCCCCCEECCCCEEEEEEECCCCEEEEEEEECHHEEEEECCC-HHHHHHHCCCCCC
T ss_conf             210621368744568604204653342244675889999756897999999843103640318-9999997374436