HHSEARCH alignment of GI: 254780584 and SCOP domain: d2j0111

Alignment

Probab=99.78  E-value=1.8e-21  Score=146.50  Aligned_cols=81  Identities=19%  Similarity=0.259  Sum_probs=70.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHCCCCCEECCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCHHHHHHHCCHHHHHHH
Q ss_conf             98541011785536772233230237425552489999855778689999972453023641887799972984455399
Q gi|254780584|r    1 MSRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVERQGGLDRFLSNSKKENLSAR   80 (97)
Q Consensus         1 Msr~C~itGk~~~~Gn~vshs~~kTkR~~~PNlq~~~~~s~~l~~~v~l~vst~~lrtI~K~GGlD~yLl~~~~~~Ls~~   80 (97)
                      |...|...|+.+++||++|||+++|+|+|.||||.+++|++  +++++++|||+|||||+|.||+|+||   +...|++.
T Consensus         7 ~Gn~v~~~Gk~~~~G~~vshs~~kTkRrf~PNLq~vr~~v~--g~~~~lrVst~alRti~k~~g~~~~l---k~~~l~~~   81 (89)
T d2j0111           7 VANSIQRRGKAKREGGVGKKTTGISKRRQYPNLQKVRVRVA--GQEITFRVAASHIPKVYELVERAKGL---KLEGLSPK   81 (89)
T ss_dssp             CCCCCCCCCEECSCCSSSSCCCEEECCCCCCCCCCCCEEET--TTTEEECCCSSSHHHHHHHHSCCCCC---CCCSCCHH
T ss_pred             CCCEEEECCCCCCCCCCEEECCCCCCCEECCCCEEEEEEEC--CEEEEEEEEHHHHHHHHHHHHHHHHH---HHCCCCHH
T ss_conf             27648734853203873420266225056477368999989--99999999979977688640077899---87379988


Q ss_pred             HHHHHHHH
Q ss_conf             99999999
Q gi|254780584|r   81 MRTLRSQI   88 (97)
Q Consensus        81 ~~klk~~i   88 (97)
                        .+++.+
T Consensus        82 --~~k~~~   87 (89)
T d2j0111          82 --EIKKEL   87 (89)
T ss_dssp             --HHHHHC
T ss_pred             --HHHHHH
T ss_conf             --998886

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L28
domain: Ribosomal protein L28 (L28p)
species: Thermus thermophilus [TaxId: 274]