HHSEARCH alignment of GI: 254780584 and SCOP domain: d2jz6a1

Alignment

Probab=99.91  E-value=3.2e-26  Score=174.98  Aligned_cols=69  Identities=29%  Similarity=0.559  Sum_probs=66.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCHHHCCCCCEECCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHCCCHHHHHHHCCH
Q ss_conf             98541011785536772233230237425552489999855778689999972453023641887799972984
Q gi|254780584|r    1 MSRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVERQGGLDRFLSNSKK   74 (97)
Q Consensus         1 Msr~C~itGk~~~~Gn~vshs~~kTkR~~~PNlq~~~~~s~~l~~~v~l~vst~~lrtI~K~GGlD~yLl~~~~   74 (97)
                      |||+||||||+|++||+||||+++|+|+|+||||++++|+|+ |++++++|||+||||    ||||.|++++++
T Consensus         1 Mar~C~itGK~~~~Gn~vShs~~kTkR~f~PNlq~~r~~~~~-g~~v~~kvst~~lrt----g~v~k~~~~~~~   69 (70)
T d2jz6a1           1 MAKRCEVCGKAPRSGNTVSHSDKKSERWFRPNLQKVRVVLPD-GTIKRMRVCTSCLKS----GKVKKYVGQVSE   69 (70)
T ss_dssp             CCCCCTTTCCCCCCCCCCCCSCCCCSSSCBTTEEEEEEEETT-TEEEEEEEEHHHHHH----CCSCCCCCCCCS
T ss_pred             CCCEEEECCCCCCCCCEEEECCCCCCCEECCCEEEEEEEECC-CCEEEEEEEHHHHHH----CCHHHHHHHHCC
T ss_conf             986700068856658717765862475264770899999239-988999999799544----478787675545

SCOP domain information

class: Alpha and beta proteins (a+b)
fold: L28p-like
superfamily: L28p-like
family: Ribosomal protein L28
domain: Ribosomal protein L28 (L28p)
species: Thermotoga maritima [TaxId: 2336]