RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780584|ref|YP_003064997.1| 50S ribosomal protein L28 [Candidatus Liberibacter asiaticus str. psy62] (97 letters) >d2qamz1 d.325.1.1 (Z:2-78) Ribosomal protein L28 (L28p) {Escherichia coli [TaxId: 562]} Length = 77 Score = 76.6 bits (189), Expect = 5e-16 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 2 SRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVER 61 SRVC++T K ++GN SHA N T+RRFLPNL + ++ LR+S +R +++ Sbjct: 1 SRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEKRFVTLRVSAKGMRVIDK 60 Query: 62 QGGLDRFLSNSKKEN 76 G+D L+ + Sbjct: 61 -KGIDTVLAELRARG 74 >d2jz6a1 d.325.1.1 (A:6-75) Ribosomal protein L28 (L28p) {Thermotoga maritima [TaxId: 2336]} Length = 70 Score = 69.7 bits (171), Expect = 7e-14 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 5/74 (6%) Query: 1 MSRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVE 60 M++ CE+ K SGN VSH++ K+ R F PNL ++ ++ ++R+ L+S Sbjct: 1 MAKRCEVCGKAPRSGNTVSHSDKKSERWFRPNLQKVRVVLPD-GTIKRMRVCTSCLKS-- 57 Query: 61 RQGGLDRFLSNSKK 74 G + +++ + Sbjct: 58 --GKVKKYVGQVSE 69 >d2zjru1 d.325.1.1 (U:8-79) Ribosomal protein L28 (L28p) {Deinococcus radiodurans [TaxId: 1299]} Length = 72 Score = 58.9 bits (143), Expect = 1e-10 Identities = 11/63 (17%), Positives = 21/63 (33%), Gaps = 2/63 (3%) Query: 1 MSRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVE 60 + K G T+R NL + + + Q + +S ALR++ Sbjct: 7 VVNSVIRRGKARADGGVGRKTTGITKRVQRANLHKKAIREN--GQVKTVWLSANALRTLS 64 Query: 61 RQG 63 + Sbjct: 65 KGP 67 >d2j0111 d.325.1.1 (1:8-96) Ribosomal protein L28 (L28p) {Thermus thermophilus [TaxId: 274]} Length = 89 Score = 54.0 bits (130), Expect = 3e-09 Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 1 MSRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVE 60 ++ + K G ++RR PNL ++ + Q+ R++ + V Sbjct: 7 VANSIQRRGKAKREGGVGKKTTGISKRRQYPNLQKVRVRVA--GQEITFRVAASHIPKVY 64 Query: 61 RQGGLDRFLSNSKKENLSAR 80 + L K E LS + Sbjct: 65 ELVERAKGL---KLEGLSPK 81 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.128 0.342 Gapped Lambda K H 0.267 0.0691 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 300,212 Number of extensions: 11160 Number of successful extensions: 26 Number of sequences better than 10.0: 1 Number of HSP's gapped: 23 Number of HSP's successfully gapped: 5 Length of query: 97 Length of database: 2,407,596 Length adjustment: 59 Effective length of query: 38 Effective length of database: 1,597,526 Effective search space: 60705988 Effective search space used: 60705988 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.0 bits)