BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780584|ref|YP_003064997.1| 50S ribosomal protein L28
[Candidatus Liberibacter asiaticus str. psy62]
         (97 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780584|ref|YP_003064997.1| 50S ribosomal protein L28 [Candidatus Liberibacter asiaticus str.
          psy62]
          Length = 97

 Score =  194 bits (493), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/97 (100%), Positives = 97/97 (100%)

Query: 1  MSRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVE 60
          MSRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVE
Sbjct: 1  MSRVCELTKKTVMSGNKVSHANNKTRRRFLPNLCRITLISDIMEQKYQLRISKCALRSVE 60

Query: 61 RQGGLDRFLSNSKKENLSARMRTLRSQILKKMSEKSS 97
          RQGGLDRFLSNSKKENLSARMRTLRSQILKKMSEKSS
Sbjct: 61 RQGGLDRFLSNSKKENLSARMRTLRSQILKKMSEKSS 97


>gi|254780942|ref|YP_003065355.1| UDP-N-acetylglucosamine pyrophosphorylase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 442

 Score = 22.7 bits (47), Expect = 1.5,   Method: Composition-based stats.
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 5   CELTKKTVMSGNKVSH 20
           CE+ K T+  G+K++H
Sbjct: 333 CEVKKATIKEGSKINH 348


>gi|254780156|ref|YP_003064569.1| putative inositol-1-monophosphatase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 256

 Score = 21.9 bits (45), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 13  MSGNKVSHANNKTRRRFLPNLCRI 36
           +S + + +A  K   RFL  LCRI
Sbjct: 149 LSNSIICYATFKRNSRFLMQLCRI 172


>gi|254780163|ref|YP_003064576.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 798

 Score = 21.2 bits (43), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 39  ISDIMEQKYQLRISKCALRS 58
           I    E+ +QLR SK A+R+
Sbjct: 379 IKPYFEEHHQLRYSKEAIRA 398


>gi|254780645|ref|YP_003065058.1| hypothetical protein CLIBASIA_02660 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 91

 Score = 20.4 bits (41), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 78 SARMRTLRSQILKKMSEKSS 97
          + +MR L    L+K+SEK S
Sbjct: 43 AVKMRILVESFLRKLSEKES 62


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.128    0.342 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,434
Number of Sequences: 1233
Number of extensions: 1695
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 97
length of database: 328,796
effective HSP length: 61
effective length of query: 36
effective length of database: 253,583
effective search space:  9128988
effective search space used:  9128988
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)