HHsearch alignment for GI: 254780585 and conserved domain: pfam03656
>pfam03656 Pam16 Pam16. The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM). In Saccharomyces cerevisiae, Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane. Pam16 has a degenerate J domain. J-domain proteins play important regulatory roles as co-chaperones, recruiting Hsp70 partners and accelerating the ATP-hydrolysis step of the chaperone cycle. Pam16's J-like domain strongly interacts with Pam18's J domain, leading to a productive interaction of Pam18 with mtHsp70 at the mitochondria import channel. Pam18 stimulates the ATPase activity of mtHsp70.
Probab=92.60 E-value=0.55 Score=27.49 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 888897699861777328899999999999999657889979
Q gi|254780585|r 127 VGSMQFNAFEILGLLSDSSPEEIRGRYKDLVKKHHPDANGGD 168 (191)
Q Consensus 127 ~~~~~~~Al~~Lgl~~~~~~~~ik~~yk~lvk~~HPD~n~g~ 168 (191)
T Consensus 53 ~gmtldEA~qILNV~~~~~~EeI~k~y~~LF~~Ndk~k-GGS 93 (127)
T pfam03656 53 GGISLDESCQILNVEEDLNMEEVNKRYEHLFEVNDKSK-GGS 93 (127)
T ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC-CCC
T ss_conf 78489999988099999999999999999986379888-986