HHsearch alignment of GI: 254780585 and MMDB domain: 1faf_A_
>1faf_A (A:) Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus}
Probab=99.04 E-value=5e-10 Score=86.23 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 88897699861777328--89999999999999965788997987999999999999999962
Q gi|254780585|r 128 GSMQFNAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS 188 (191)
Q Consensus 128 ~~~~~~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S 188 (191)
.......|+||||+++| |.++||++|++|++++|||+++. .+.|+.|++||++|.+.
T Consensus 7 ~~~~~d~Y~iLgv~~~A~~s~~eIk~ayr~l~~~~hPdk~~~----~~~f~~i~~Ay~vLsd~ 65 (79)
T 1faf_A 7 RADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS----HALMQELNSLWGTFKTE 65 (79)
T ss_dssp HHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----HHHHHHHHHHHHHHCCH
T ss_conf 657899999948999989899999999999999879888998----99999999999998789