HHSEARCH alignment of GI: 254780585 and SCOP domain: d1fafa_

Alignment
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=99.33  E-value=1.5e-12  Score=100.18  Aligned_cols=56  Identities=20%  Similarity=0.252  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHCCCCCC--CHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8897699861777328--89999999999999965788997987999999999999999962
Q gi|254780585|r  129 SMQFNAFEILGLLSDS--SPEEIRGRYKDLVKKHHPDANGGDRGSEERFQAVIQAYKILKKS  188 (191)
Q Consensus       129 ~~~~~Al~~Lgl~~~~--~~~~ik~~yk~lvk~~HPD~n~g~~~~ee~~~~I~~Ay~~Lk~S  188 (191)
                      ....++|+||||++++  +..+||++|++||++||||++ |+   +++|++|++||++|++.
T Consensus         8 ~~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~-g~---~e~~~~in~Ay~~L~d~   65 (79)
T d1fafa_           8 ADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKG-GS---HALMQELNSLWGTFKTE   65 (79)
T ss_dssp             HHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGS-CC---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CC---HHHHHHHHHHHHHHCCH
T ss_conf             779999999099978898999999999999998672438-88---99999999999997789


SCOP domain information

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]